Multiple sequence alignment - TraesCS2A01G030900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G030900 chr2A 100.000 5933 0 0 1 5933 14284876 14290808 0.000000e+00 10957.0
1 TraesCS2A01G030900 chr2A 93.102 2653 99 28 3310 5933 13915182 13912585 0.000000e+00 3808.0
2 TraesCS2A01G030900 chr2A 93.758 785 39 6 786 1562 13917332 13916550 0.000000e+00 1170.0
3 TraesCS2A01G030900 chr2A 95.292 616 27 2 2080 2694 13915820 13915206 0.000000e+00 976.0
4 TraesCS2A01G030900 chr2A 98.913 184 2 0 1890 2073 13916275 13916092 4.430000e-86 329.0
5 TraesCS2A01G030900 chr2A 98.571 70 1 0 1826 1895 346210398 346210467 2.250000e-24 124.0
6 TraesCS2A01G030900 chr2A 97.015 67 2 0 1826 1892 244314743 244314809 4.860000e-21 113.0
7 TraesCS2A01G030900 chr2A 97.778 45 1 0 1 45 13918227 13918183 1.770000e-10 78.7
8 TraesCS2A01G030900 chr2A 100.000 30 0 0 3265 3294 13915214 13915185 8.310000e-04 56.5
9 TraesCS2A01G030900 chr2B 91.441 1659 80 26 3746 5346 21853003 21854657 0.000000e+00 2220.0
10 TraesCS2A01G030900 chr2B 95.143 1297 58 3 3809 5101 19846072 19847367 0.000000e+00 2041.0
11 TraesCS2A01G030900 chr2B 88.066 972 65 18 880 1807 19843410 19844374 0.000000e+00 1105.0
12 TraesCS2A01G030900 chr2B 87.975 790 56 15 786 1562 21531940 21531177 0.000000e+00 896.0
13 TraesCS2A01G030900 chr2B 91.774 620 38 6 943 1559 21850486 21851095 0.000000e+00 850.0
14 TraesCS2A01G030900 chr2B 93.052 403 21 7 5537 5933 19847826 19848227 3.080000e-162 582.0
15 TraesCS2A01G030900 chr2B 77.250 1011 196 30 3805 4797 23015311 23016305 4.010000e-156 562.0
16 TraesCS2A01G030900 chr2B 93.684 285 17 1 2373 2656 19845260 19845544 5.500000e-115 425.0
17 TraesCS2A01G030900 chr2B 92.982 285 19 1 2373 2656 21852271 21852555 1.190000e-111 414.0
18 TraesCS2A01G030900 chr2B 95.219 251 10 2 2123 2371 19844849 19845099 4.310000e-106 396.0
19 TraesCS2A01G030900 chr2B 94.024 251 13 2 2123 2371 21851860 21852110 4.340000e-101 379.0
20 TraesCS2A01G030900 chr2B 89.726 292 26 4 2230 2521 21530177 21529890 2.610000e-98 370.0
21 TraesCS2A01G030900 chr2B 89.575 259 12 4 1564 1807 21851127 21851385 1.240000e-81 315.0
22 TraesCS2A01G030900 chr2B 85.806 310 24 12 173 477 21533961 21534255 1.610000e-80 311.0
23 TraesCS2A01G030900 chr2B 92.593 189 9 1 1890 2073 19844373 19844561 3.520000e-67 267.0
24 TraesCS2A01G030900 chr2B 91.534 189 11 1 1890 2073 21851384 21851572 7.630000e-64 255.0
25 TraesCS2A01G030900 chr2B 88.462 208 17 3 3265 3472 21852616 21852816 1.650000e-60 244.0
26 TraesCS2A01G030900 chr2B 89.119 193 16 1 3265 3457 19845603 19845790 9.940000e-58 235.0
27 TraesCS2A01G030900 chr2B 83.094 278 21 10 3492 3743 19845794 19846071 4.620000e-56 230.0
28 TraesCS2A01G030900 chr2B 91.791 134 7 2 357 486 19841954 19842087 3.650000e-42 183.0
29 TraesCS2A01G030900 chr2B 85.484 186 12 3 3492 3662 21852807 21852992 4.720000e-41 180.0
30 TraesCS2A01G030900 chr2B 84.239 184 8 3 1890 2073 21530931 21530769 6.150000e-35 159.0
31 TraesCS2A01G030900 chr2B 87.931 116 10 3 5168 5279 19847384 19847499 3.730000e-27 134.0
32 TraesCS2A01G030900 chr2B 93.750 80 5 0 471 550 21532588 21532509 2.900000e-23 121.0
33 TraesCS2A01G030900 chr2B 90.667 75 7 0 688 762 21532083 21532009 3.780000e-17 100.0
34 TraesCS2A01G030900 chr2B 92.424 66 5 0 5432 5497 19847580 19847645 1.760000e-15 95.3
35 TraesCS2A01G030900 chr2B 95.745 47 2 0 2 48 19839600 19839646 6.380000e-10 76.8
36 TraesCS2A01G030900 chr2B 100.000 36 0 0 2080 2115 19844827 19844862 3.840000e-07 67.6
37 TraesCS2A01G030900 chr3D 97.548 571 14 0 2694 3264 274258998 274259568 0.000000e+00 977.0
38 TraesCS2A01G030900 chr3D 97.208 573 15 1 2694 3266 602474843 602475414 0.000000e+00 968.0
39 TraesCS2A01G030900 chr3D 93.103 87 6 0 1807 1893 136773959 136774045 1.740000e-25 128.0
40 TraesCS2A01G030900 chr3D 100.000 29 0 0 559 587 519603333 519603305 3.000000e-03 54.7
41 TraesCS2A01G030900 chr2D 97.023 571 17 0 2694 3264 358937106 358936536 0.000000e+00 961.0
42 TraesCS2A01G030900 chr2D 98.571 70 1 0 1826 1895 270480319 270480388 2.250000e-24 124.0
43 TraesCS2A01G030900 chr2D 100.000 30 0 0 1802 1831 631962948 631962919 8.310000e-04 56.5
44 TraesCS2A01G030900 chr7A 96.696 575 18 1 2694 3267 78128045 78128619 0.000000e+00 955.0
45 TraesCS2A01G030900 chr7A 96.007 576 23 0 2689 3264 214373361 214372786 0.000000e+00 937.0
46 TraesCS2A01G030900 chr7A 100.000 29 0 0 1802 1830 49392926 49392954 3.000000e-03 54.7
47 TraesCS2A01G030900 chr4D 96.194 578 18 4 2694 3270 471930171 471929597 0.000000e+00 942.0
48 TraesCS2A01G030900 chr4D 97.015 67 2 0 1826 1892 367720821 367720887 4.860000e-21 113.0
49 TraesCS2A01G030900 chr3A 96.329 572 21 0 2694 3265 65507886 65507315 0.000000e+00 941.0
50 TraesCS2A01G030900 chr3A 96.154 572 22 0 2694 3265 394992416 394992987 0.000000e+00 935.0
51 TraesCS2A01G030900 chr6A 95.563 586 25 1 2689 3274 109156490 109157074 0.000000e+00 937.0
52 TraesCS2A01G030900 chr6D 95.556 90 4 0 1808 1897 389702387 389702298 1.720000e-30 145.0
53 TraesCS2A01G030900 chr4A 91.209 91 5 1 1807 1894 2980652 2980562 2.900000e-23 121.0
54 TraesCS2A01G030900 chr5D 97.015 67 2 0 1826 1892 450858559 450858625 4.860000e-21 113.0
55 TraesCS2A01G030900 chr5B 90.361 83 7 1 1812 1893 591784715 591784797 2.260000e-19 108.0
56 TraesCS2A01G030900 chr7D 97.500 40 1 0 1802 1841 30842128 30842167 1.070000e-07 69.4
57 TraesCS2A01G030900 chr1A 96.970 33 1 0 1799 1831 6470340 6470372 8.310000e-04 56.5
58 TraesCS2A01G030900 chr4B 100.000 28 0 0 1804 1831 7050533 7050506 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G030900 chr2A 14284876 14290808 5932 False 10957.000000 10957 100.000000 1 5933 1 chr2A.!!$F1 5932
1 TraesCS2A01G030900 chr2A 13912585 13918227 5642 True 1069.700000 3808 96.473833 1 5933 6 chr2A.!!$R1 5932
2 TraesCS2A01G030900 chr2B 21850486 21854657 4171 False 607.125000 2220 90.659500 943 5346 8 chr2B.!!$F4 4403
3 TraesCS2A01G030900 chr2B 23015311 23016305 994 False 562.000000 562 77.250000 3805 4797 1 chr2B.!!$F2 992
4 TraesCS2A01G030900 chr2B 19839600 19848227 8627 False 449.053846 2041 92.143154 2 5933 13 chr2B.!!$F3 5931
5 TraesCS2A01G030900 chr2B 21529890 21532588 2698 True 329.200000 896 89.271400 471 2521 5 chr2B.!!$R1 2050
6 TraesCS2A01G030900 chr3D 274258998 274259568 570 False 977.000000 977 97.548000 2694 3264 1 chr3D.!!$F2 570
7 TraesCS2A01G030900 chr3D 602474843 602475414 571 False 968.000000 968 97.208000 2694 3266 1 chr3D.!!$F3 572
8 TraesCS2A01G030900 chr2D 358936536 358937106 570 True 961.000000 961 97.023000 2694 3264 1 chr2D.!!$R1 570
9 TraesCS2A01G030900 chr7A 78128045 78128619 574 False 955.000000 955 96.696000 2694 3267 1 chr7A.!!$F2 573
10 TraesCS2A01G030900 chr7A 214372786 214373361 575 True 937.000000 937 96.007000 2689 3264 1 chr7A.!!$R1 575
11 TraesCS2A01G030900 chr4D 471929597 471930171 574 True 942.000000 942 96.194000 2694 3270 1 chr4D.!!$R1 576
12 TraesCS2A01G030900 chr3A 65507315 65507886 571 True 941.000000 941 96.329000 2694 3265 1 chr3A.!!$R1 571
13 TraesCS2A01G030900 chr3A 394992416 394992987 571 False 935.000000 935 96.154000 2694 3265 1 chr3A.!!$F1 571
14 TraesCS2A01G030900 chr6A 109156490 109157074 584 False 937.000000 937 95.563000 2689 3274 1 chr6A.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 2233 0.871722 CAACCGGAACAGCGAAATCA 59.128 50.0 9.46 0.0 0.00 2.57 F
1819 5427 0.257039 TACAGGTACTCCCTCCGTCC 59.743 60.0 0.00 0.0 43.86 4.79 F
1867 5475 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.0 29.18 18.9 34.20 4.46 F
1889 5497 0.320697 ACTTTTTCGGACGGAGGGAG 59.679 55.0 0.00 0.0 0.00 4.30 F
3266 7528 0.552848 ACCCATTGCCATCCCTACTG 59.447 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 5456 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.0 34.61 3.02 R
3342 7604 1.421646 GGTGCCTGCAATAGTATCCCT 59.578 52.381 0.00 0.0 0.00 4.20 R
3791 8080 4.457257 GTGCATAGAAACTTCCAGAAAGCT 59.543 41.667 0.00 0.0 38.67 3.74 R
3969 8279 5.335426 CCCATTCAATTCTCGCCATATGAAG 60.335 44.000 3.65 0.0 31.14 3.02 R
5355 9709 1.470632 GGCTCGTCAGGAGATTGACTG 60.471 57.143 0.00 0.0 46.23 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 1842 2.607499 TCCATGGGTGAATGCAAACTT 58.393 42.857 13.02 0.00 0.00 2.66
73 1862 6.412362 ACTTATCTGCACTAGATTCCGAAT 57.588 37.500 0.00 0.00 43.68 3.34
74 1863 7.526142 ACTTATCTGCACTAGATTCCGAATA 57.474 36.000 0.00 0.00 43.68 1.75
98 1887 2.896044 ACAACTCAGATGCTCTCAGACA 59.104 45.455 0.00 0.00 0.00 3.41
101 1890 2.230992 ACTCAGATGCTCTCAGACACAC 59.769 50.000 0.00 0.00 0.00 3.82
111 1900 3.991051 AGACACACTCGCACCCGG 61.991 66.667 0.00 0.00 34.56 5.73
130 1919 1.656652 GCGGCACATAGAACAGACAT 58.343 50.000 0.00 0.00 0.00 3.06
140 1929 6.745907 CACATAGAACAGACATGCAATCTTTG 59.254 38.462 1.17 0.00 0.00 2.77
172 1963 3.756963 GAGTTGGGTTCGGAAGCTTAATT 59.243 43.478 18.29 11.14 0.00 1.40
181 1972 6.038936 GGTTCGGAAGCTTAATTTGCCTATTA 59.961 38.462 12.42 0.00 0.00 0.98
183 1974 6.354130 TCGGAAGCTTAATTTGCCTATTAGT 58.646 36.000 0.00 0.00 0.00 2.24
237 2028 2.534298 CTGCAATCTCACGTCACCTAG 58.466 52.381 0.00 0.00 0.00 3.02
242 2033 5.109903 GCAATCTCACGTCACCTAGTTTAT 58.890 41.667 0.00 0.00 0.00 1.40
244 2035 4.713824 TCTCACGTCACCTAGTTTATGG 57.286 45.455 0.00 0.00 0.00 2.74
245 2036 4.338012 TCTCACGTCACCTAGTTTATGGA 58.662 43.478 0.00 0.00 0.00 3.41
246 2037 4.398358 TCTCACGTCACCTAGTTTATGGAG 59.602 45.833 0.00 0.00 0.00 3.86
247 2038 3.119245 TCACGTCACCTAGTTTATGGAGC 60.119 47.826 0.00 0.00 0.00 4.70
248 2039 2.167900 ACGTCACCTAGTTTATGGAGCC 59.832 50.000 0.00 0.00 0.00 4.70
249 2040 2.167693 CGTCACCTAGTTTATGGAGCCA 59.832 50.000 0.00 0.00 0.00 4.75
251 2042 4.038763 CGTCACCTAGTTTATGGAGCCATA 59.961 45.833 5.13 5.13 37.82 2.74
252 2043 5.279506 CGTCACCTAGTTTATGGAGCCATAT 60.280 44.000 9.87 0.00 38.52 1.78
253 2044 6.534634 GTCACCTAGTTTATGGAGCCATATT 58.465 40.000 9.87 2.89 38.52 1.28
254 2045 6.651225 GTCACCTAGTTTATGGAGCCATATTC 59.349 42.308 9.87 6.69 38.52 1.75
256 2047 6.652481 CACCTAGTTTATGGAGCCATATTCTG 59.348 42.308 9.87 4.51 38.52 3.02
257 2048 6.330250 ACCTAGTTTATGGAGCCATATTCTGT 59.670 38.462 9.87 4.99 38.52 3.41
258 2049 6.876257 CCTAGTTTATGGAGCCATATTCTGTC 59.124 42.308 9.87 0.00 38.52 3.51
260 2051 5.370880 AGTTTATGGAGCCATATTCTGTCCT 59.629 40.000 9.87 0.00 38.52 3.85
261 2052 5.912149 TTATGGAGCCATATTCTGTCCTT 57.088 39.130 9.87 0.00 38.52 3.36
263 2054 4.591321 TGGAGCCATATTCTGTCCTTTT 57.409 40.909 0.00 0.00 0.00 2.27
264 2055 4.272489 TGGAGCCATATTCTGTCCTTTTG 58.728 43.478 0.00 0.00 0.00 2.44
267 2058 3.698040 AGCCATATTCTGTCCTTTTGCTG 59.302 43.478 0.00 0.00 0.00 4.41
269 2060 4.201990 GCCATATTCTGTCCTTTTGCTGAG 60.202 45.833 0.00 0.00 0.00 3.35
271 2062 1.609208 TTCTGTCCTTTTGCTGAGGC 58.391 50.000 0.00 0.00 34.17 4.70
273 2064 2.192608 CTGTCCTTTTGCTGAGGCGC 62.193 60.000 0.00 0.00 42.25 6.53
274 2065 3.049674 TCCTTTTGCTGAGGCGCG 61.050 61.111 0.00 0.00 42.25 6.86
275 2066 3.049674 CCTTTTGCTGAGGCGCGA 61.050 61.111 12.10 0.00 42.25 5.87
276 2067 2.477845 CTTTTGCTGAGGCGCGAG 59.522 61.111 12.10 0.00 42.25 5.03
277 2068 2.029288 CTTTTGCTGAGGCGCGAGA 61.029 57.895 12.10 0.00 42.25 4.04
279 2070 3.939837 TTTGCTGAGGCGCGAGAGG 62.940 63.158 12.10 0.00 42.25 3.69
287 2078 4.266070 GCGCGAGAGGCCACGATA 62.266 66.667 12.10 0.00 38.94 2.92
315 2218 2.409870 CCAGGCTTCGGCATCAACC 61.410 63.158 0.00 0.00 43.96 3.77
330 2233 0.871722 CAACCGGAACAGCGAAATCA 59.128 50.000 9.46 0.00 0.00 2.57
341 2244 6.292114 GGAACAGCGAAATCAAACGAAATTTT 60.292 34.615 0.00 0.00 0.00 1.82
357 2260 5.503376 CGAAATTTTGATCGGTTCAACGTAG 59.497 40.000 0.00 0.00 43.99 3.51
358 2261 3.799137 TTTTGATCGGTTCAACGTAGC 57.201 42.857 1.10 0.00 43.99 3.58
374 2386 8.405418 TCAACGTAGCAGTAGGAAAGATATAT 57.595 34.615 0.00 0.00 0.00 0.86
376 2388 9.776158 CAACGTAGCAGTAGGAAAGATATATAG 57.224 37.037 0.00 0.00 0.00 1.31
444 2457 9.502091 GCCAGTAATAACATGGATAACAGATTA 57.498 33.333 0.00 0.00 36.09 1.75
520 2536 4.497473 AAAAATCAGGAAAATCGACGCA 57.503 36.364 0.00 0.00 0.00 5.24
543 2559 5.772393 TTCTCTCTCCTAGTCTCTGTTCT 57.228 43.478 0.00 0.00 0.00 3.01
547 2563 7.127405 TCTCTCTCCTAGTCTCTGTTCTACTA 58.873 42.308 0.00 0.00 0.00 1.82
548 2564 7.787904 TCTCTCTCCTAGTCTCTGTTCTACTAT 59.212 40.741 0.00 0.00 0.00 2.12
549 2565 9.085645 CTCTCTCCTAGTCTCTGTTCTACTATA 57.914 40.741 0.00 0.00 0.00 1.31
550 2566 8.863086 TCTCTCCTAGTCTCTGTTCTACTATAC 58.137 40.741 0.00 0.00 0.00 1.47
551 2567 8.786710 TCTCCTAGTCTCTGTTCTACTATACT 57.213 38.462 0.00 0.00 0.00 2.12
552 2568 9.880254 TCTCCTAGTCTCTGTTCTACTATACTA 57.120 37.037 0.00 0.00 0.00 1.82
553 2569 9.918630 CTCCTAGTCTCTGTTCTACTATACTAC 57.081 40.741 0.00 0.00 0.00 2.73
555 2571 8.359642 CCTAGTCTCTGTTCTACTATACTACGT 58.640 40.741 0.00 0.00 0.00 3.57
556 2572 9.748708 CTAGTCTCTGTTCTACTATACTACGTT 57.251 37.037 0.00 0.00 0.00 3.99
557 2573 8.647143 AGTCTCTGTTCTACTATACTACGTTC 57.353 38.462 0.00 0.00 0.00 3.95
558 2574 8.477256 AGTCTCTGTTCTACTATACTACGTTCT 58.523 37.037 0.00 0.00 0.00 3.01
560 2576 9.664332 TCTCTGTTCTACTATACTACGTTCTTT 57.336 33.333 0.00 0.00 0.00 2.52
578 2594 9.245962 ACGTTCTTTTATATTATGAGACGAAGG 57.754 33.333 0.00 0.00 0.00 3.46
579 2595 8.700644 CGTTCTTTTATATTATGAGACGAAGGG 58.299 37.037 0.00 0.00 0.00 3.95
598 2680 9.151177 ACGAAGGGAGTATTTAATACCTAATCA 57.849 33.333 11.07 0.00 36.40 2.57
619 2701 5.065914 TCAAATGCTCCTTGCTCATATACC 58.934 41.667 0.00 0.00 43.37 2.73
624 2729 3.326297 GCTCCTTGCTCATATACCCTCTT 59.674 47.826 0.00 0.00 38.95 2.85
625 2730 4.562552 GCTCCTTGCTCATATACCCTCTTC 60.563 50.000 0.00 0.00 38.95 2.87
629 2734 3.157881 TGCTCATATACCCTCTTCCTCG 58.842 50.000 0.00 0.00 0.00 4.63
640 2745 0.898326 TCTTCCTCGCTGCCAGTACA 60.898 55.000 0.00 0.00 0.00 2.90
649 2754 2.806244 CGCTGCCAGTACAACTAGTTTT 59.194 45.455 5.07 1.84 0.00 2.43
660 2765 9.924650 CAGTACAACTAGTTTTAGTACTCCAAT 57.075 33.333 24.03 9.48 42.33 3.16
778 4260 9.970243 AAAAATAAAAACGTTTTTAAACCTCGG 57.030 25.926 36.39 0.00 43.43 4.63
779 4261 8.923609 AAATAAAAACGTTTTTAAACCTCGGA 57.076 26.923 36.39 20.98 43.43 4.55
780 4262 8.564648 AATAAAAACGTTTTTAAACCTCGGAG 57.435 30.769 36.39 0.00 43.43 4.63
781 4263 4.556942 AAACGTTTTTAAACCTCGGAGG 57.443 40.909 22.40 22.40 42.49 4.30
782 4264 3.473923 ACGTTTTTAAACCTCGGAGGA 57.526 42.857 30.13 5.36 37.67 3.71
783 4265 3.396560 ACGTTTTTAAACCTCGGAGGAG 58.603 45.455 30.13 5.36 37.67 3.69
789 4287 7.095102 CGTTTTTAAACCTCGGAGGAGATTTTA 60.095 37.037 30.13 19.39 37.24 1.52
793 4291 8.502105 TTAAACCTCGGAGGAGATTTTAATTC 57.498 34.615 30.13 0.00 43.27 2.17
819 4317 4.306600 GAGCAGCTAGAAAGAAGATAGGC 58.693 47.826 0.00 0.00 0.00 3.93
828 4326 5.916318 AGAAAGAAGATAGGCTCACATCAG 58.084 41.667 0.00 0.00 0.00 2.90
829 4327 5.424895 AGAAAGAAGATAGGCTCACATCAGT 59.575 40.000 0.00 0.00 0.00 3.41
831 4329 5.021033 AGAAGATAGGCTCACATCAGTTG 57.979 43.478 0.00 0.00 0.00 3.16
832 4330 4.469227 AGAAGATAGGCTCACATCAGTTGT 59.531 41.667 0.00 0.00 39.91 3.32
833 4331 4.833478 AGATAGGCTCACATCAGTTGTT 57.167 40.909 0.00 0.00 36.00 2.83
852 4358 1.008309 GCTCTCATCGCTACCGTCC 60.008 63.158 0.00 0.00 35.54 4.79
861 4367 2.613691 TCGCTACCGTCCTCAAATTTC 58.386 47.619 0.00 0.00 35.54 2.17
878 4389 2.373335 TTCAGCCAAAAGTAAGCCCA 57.627 45.000 0.00 0.00 0.00 5.36
971 4489 0.984995 CTTTCCCCGGAACTTCTCCT 59.015 55.000 0.73 0.00 42.85 3.69
1404 4928 0.696501 ACCCGCAAATCCACTACCTT 59.303 50.000 0.00 0.00 0.00 3.50
1411 4935 3.366374 GCAAATCCACTACCTTGAAGCAC 60.366 47.826 0.00 0.00 0.00 4.40
1420 4944 3.297134 ACCTTGAAGCACTTCCTCAAA 57.703 42.857 7.88 0.00 38.77 2.69
1431 4955 1.945394 CTTCCTCAAATCCGCCTCATG 59.055 52.381 0.00 0.00 0.00 3.07
1461 4985 1.735973 CATGGAGGAGATGACGCGA 59.264 57.895 15.93 0.00 0.00 5.87
1523 5047 1.079621 ACTACCACGACCCCATCCA 59.920 57.895 0.00 0.00 0.00 3.41
1562 5089 4.019681 ACCAATTTCTCACCCATCTCGTTA 60.020 41.667 0.00 0.00 0.00 3.18
1606 5166 7.222031 CGGAAATTTCATTCTGTACGATGTCTA 59.778 37.037 19.49 0.00 32.20 2.59
1629 5191 2.101582 GTCAGAACACACTGTCTGTCCT 59.898 50.000 0.00 0.00 38.79 3.85
1630 5192 2.362397 TCAGAACACACTGTCTGTCCTC 59.638 50.000 0.00 0.00 38.79 3.71
1631 5193 2.363680 CAGAACACACTGTCTGTCCTCT 59.636 50.000 0.00 0.00 33.73 3.69
1632 5194 2.363680 AGAACACACTGTCTGTCCTCTG 59.636 50.000 0.00 0.00 0.00 3.35
1634 5196 1.683917 ACACACTGTCTGTCCTCTGTC 59.316 52.381 0.00 0.00 0.00 3.51
1635 5197 1.683385 CACACTGTCTGTCCTCTGTCA 59.317 52.381 0.00 0.00 0.00 3.58
1636 5198 1.959985 ACACTGTCTGTCCTCTGTCAG 59.040 52.381 0.00 0.00 35.88 3.51
1681 5286 4.280677 TCTTCAAATTTTCATTGCGAGGGT 59.719 37.500 0.00 0.00 0.00 4.34
1811 5419 9.853177 TTTAAGGTAGTAGTATACAGGTACTCC 57.147 37.037 5.50 7.94 46.26 3.85
1812 5420 6.446909 AGGTAGTAGTATACAGGTACTCCC 57.553 45.833 5.50 5.15 46.26 4.30
1813 5421 6.156812 AGGTAGTAGTATACAGGTACTCCCT 58.843 44.000 5.50 7.27 46.26 4.20
1814 5422 6.272090 AGGTAGTAGTATACAGGTACTCCCTC 59.728 46.154 5.50 0.00 46.26 4.30
1815 5423 5.581350 AGTAGTATACAGGTACTCCCTCC 57.419 47.826 5.50 0.00 46.26 4.30
1816 5424 3.505480 AGTATACAGGTACTCCCTCCG 57.495 52.381 5.50 0.00 43.86 4.63
1817 5425 2.782341 AGTATACAGGTACTCCCTCCGT 59.218 50.000 5.50 0.00 43.86 4.69
1818 5426 2.361643 ATACAGGTACTCCCTCCGTC 57.638 55.000 0.00 0.00 43.86 4.79
1819 5427 0.257039 TACAGGTACTCCCTCCGTCC 59.743 60.000 0.00 0.00 43.86 4.79
1820 5428 2.119655 CAGGTACTCCCTCCGTCCG 61.120 68.421 0.00 0.00 43.86 4.79
1821 5429 2.273449 GGTACTCCCTCCGTCCGA 59.727 66.667 0.00 0.00 0.00 4.55
1822 5430 1.379044 GGTACTCCCTCCGTCCGAA 60.379 63.158 0.00 0.00 0.00 4.30
1823 5431 0.967380 GGTACTCCCTCCGTCCGAAA 60.967 60.000 0.00 0.00 0.00 3.46
1824 5432 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
1825 5433 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
1845 5453 6.759497 AAAAACTTGGTGCTAGATACATCC 57.241 37.500 0.00 0.00 0.00 3.51
1846 5454 5.435686 AAACTTGGTGCTAGATACATCCA 57.564 39.130 0.00 0.00 0.00 3.41
1847 5455 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
1848 5456 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
1849 5457 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
1850 5458 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
1851 5459 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
1852 5460 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
1853 5461 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
1854 5462 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
1855 5463 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
1856 5464 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
1857 5465 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
1858 5466 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
1859 5467 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
1860 5468 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
1861 5469 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
1862 5470 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
1863 5471 2.517959 TCCATTTGAGGGACAAGCTTG 58.482 47.619 24.84 24.84 39.77 4.01
1864 5472 1.547372 CCATTTGAGGGACAAGCTTGG 59.453 52.381 29.18 12.28 39.77 3.61
1865 5473 1.547372 CATTTGAGGGACAAGCTTGGG 59.453 52.381 29.18 6.83 39.77 4.12
1866 5474 0.850100 TTTGAGGGACAAGCTTGGGA 59.150 50.000 29.18 4.51 39.77 4.37
1867 5475 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.000 29.18 18.90 34.20 4.46
1868 5476 1.059584 TGAGGGACAAGCTTGGGACA 61.060 55.000 29.18 17.71 0.00 4.02
1869 5477 4.092026 TTGAGGGACAAGCTTGGGACAA 62.092 50.000 29.18 21.59 37.48 3.18
1870 5478 5.540513 TTGAGGGACAAGCTTGGGACAAA 62.541 47.826 29.18 13.65 37.48 2.83
1882 5490 1.671845 TGGGACAAACTTTTTCGGACG 59.328 47.619 0.00 0.00 31.92 4.79
1883 5491 1.002142 GGGACAAACTTTTTCGGACGG 60.002 52.381 0.00 0.00 0.00 4.79
1884 5492 1.941975 GGACAAACTTTTTCGGACGGA 59.058 47.619 0.00 0.00 0.00 4.69
1885 5493 2.032290 GGACAAACTTTTTCGGACGGAG 60.032 50.000 0.00 0.00 0.00 4.63
1886 5494 1.944709 ACAAACTTTTTCGGACGGAGG 59.055 47.619 0.00 0.00 0.00 4.30
1887 5495 1.265905 CAAACTTTTTCGGACGGAGGG 59.734 52.381 0.00 0.00 0.00 4.30
1888 5496 0.760572 AACTTTTTCGGACGGAGGGA 59.239 50.000 0.00 0.00 0.00 4.20
1889 5497 0.320697 ACTTTTTCGGACGGAGGGAG 59.679 55.000 0.00 0.00 0.00 4.30
1890 5498 0.320697 CTTTTTCGGACGGAGGGAGT 59.679 55.000 0.00 0.00 0.00 3.85
1891 5499 1.547372 CTTTTTCGGACGGAGGGAGTA 59.453 52.381 0.00 0.00 0.00 2.59
2073 5686 6.248433 TGGGTTTCTGCTCTTCATTTTCTAT 58.752 36.000 0.00 0.00 0.00 1.98
2074 5687 6.151648 TGGGTTTCTGCTCTTCATTTTCTATG 59.848 38.462 0.00 0.00 0.00 2.23
2075 5688 6.151817 GGGTTTCTGCTCTTCATTTTCTATGT 59.848 38.462 0.00 0.00 0.00 2.29
2076 5689 7.309438 GGGTTTCTGCTCTTCATTTTCTATGTT 60.309 37.037 0.00 0.00 0.00 2.71
2077 5690 7.540055 GGTTTCTGCTCTTCATTTTCTATGTTG 59.460 37.037 0.00 0.00 0.00 3.33
2078 5691 7.750229 TTCTGCTCTTCATTTTCTATGTTGT 57.250 32.000 0.00 0.00 0.00 3.32
2255 6325 9.878599 TTTTCTTTAAAGACTATTTTCTCTGCG 57.121 29.630 17.51 0.00 34.13 5.18
2321 6392 8.357402 GGAGCAGTTTGGTATTTTCTTTTCTAA 58.643 33.333 0.00 0.00 0.00 2.10
2428 6658 2.114638 TGTGCAACAGTTCTTGCCC 58.885 52.632 0.00 0.00 45.67 5.36
2568 6799 2.632996 CCTCCTCACCACACACTTTCTA 59.367 50.000 0.00 0.00 0.00 2.10
2590 6821 4.247267 TGTTAGACCCAGTTACAGAACG 57.753 45.455 0.00 0.00 40.76 3.95
2633 6864 2.167662 TCGGAATCTTGGCTTTTTCCC 58.832 47.619 0.00 0.00 35.28 3.97
2666 6928 2.571653 ACACATACACCTGCCATGTAGT 59.428 45.455 0.00 0.00 36.04 2.73
2880 7142 1.750332 CGTATGACATGTGGGGCCATT 60.750 52.381 1.15 0.00 0.00 3.16
2996 7258 6.127310 GGTATGTCACACTTAAGGACTCATCT 60.127 42.308 7.53 0.00 32.84 2.90
3052 7314 5.185668 TGTTGACATTTGTGAGTGAATGG 57.814 39.130 0.00 0.00 37.53 3.16
3224 7486 2.557452 GGTCATGGGTTGGATTTGGACT 60.557 50.000 0.00 0.00 0.00 3.85
3266 7528 0.552848 ACCCATTGCCATCCCTACTG 59.447 55.000 0.00 0.00 0.00 2.74
3272 7534 0.630673 TGCCATCCCTACTGCCAATT 59.369 50.000 0.00 0.00 0.00 2.32
3273 7535 1.035139 GCCATCCCTACTGCCAATTG 58.965 55.000 0.00 0.00 0.00 2.32
3274 7536 1.035139 CCATCCCTACTGCCAATTGC 58.965 55.000 0.00 0.00 41.77 3.56
3275 7537 1.410648 CCATCCCTACTGCCAATTGCT 60.411 52.381 0.00 0.00 42.00 3.91
3276 7538 2.158623 CCATCCCTACTGCCAATTGCTA 60.159 50.000 0.00 0.00 42.00 3.49
3277 7539 2.710096 TCCCTACTGCCAATTGCTAC 57.290 50.000 0.00 0.00 42.00 3.58
3278 7540 1.912731 TCCCTACTGCCAATTGCTACA 59.087 47.619 0.00 0.00 42.00 2.74
3279 7541 2.017049 CCCTACTGCCAATTGCTACAC 58.983 52.381 0.00 0.00 42.00 2.90
3280 7542 2.617788 CCCTACTGCCAATTGCTACACA 60.618 50.000 0.00 0.00 42.00 3.72
3281 7543 3.282021 CCTACTGCCAATTGCTACACAT 58.718 45.455 0.00 0.00 42.00 3.21
3282 7544 3.696051 CCTACTGCCAATTGCTACACATT 59.304 43.478 0.00 0.00 42.00 2.71
3283 7545 4.158394 CCTACTGCCAATTGCTACACATTT 59.842 41.667 0.00 0.00 42.00 2.32
3297 7559 7.526608 TGCTACACATTTCTACTTTTACATGC 58.473 34.615 0.00 0.00 0.00 4.06
3342 7604 7.503521 TTTCTTGCACAATATATAATCCGCA 57.496 32.000 0.00 0.00 0.00 5.69
3472 7734 8.851145 GGAATTTTTCTCCTCTCAGTTAAAACT 58.149 33.333 0.00 0.00 40.60 2.66
3768 8057 3.118531 AGAGAGAGAGAGAGAGAGCCTT 58.881 50.000 0.00 0.00 0.00 4.35
3800 8089 3.255149 ACAATTTCTGCAGAGCTTTCTGG 59.745 43.478 17.43 5.30 38.14 3.86
3969 8279 2.918571 TGCTACTGCACTTGTCTGC 58.081 52.632 0.00 0.00 45.31 4.26
4137 8447 5.482908 CATGTTAAGGAAGTGCTGACTACT 58.517 41.667 0.00 0.00 0.00 2.57
4394 8707 2.289820 CTGGAGATTGCACCATTGATCG 59.710 50.000 0.00 0.00 34.15 3.69
4404 8717 4.122776 GCACCATTGATCGTTACTCTCAT 58.877 43.478 0.00 0.00 0.00 2.90
4422 8735 2.964464 TCATGTGTTTGATTGCTGGGTT 59.036 40.909 0.00 0.00 0.00 4.11
4669 8985 0.248012 TTATCTGAAGAACCCGCGCA 59.752 50.000 8.75 0.00 0.00 6.09
4911 9233 4.451096 GTCGAGCAGTTGGAAAACAAGATA 59.549 41.667 0.00 0.00 40.38 1.98
4987 9320 4.796110 ACCTGTATATGCATCACCCTTT 57.204 40.909 0.19 0.00 0.00 3.11
5016 9353 7.147897 TGGGTGTTTTTGTTGTTGTGTATATGA 60.148 33.333 0.00 0.00 0.00 2.15
5044 9381 1.522092 CCATAGCGGCACAGGAAGA 59.478 57.895 1.45 0.00 0.00 2.87
5056 9393 5.394224 CGGCACAGGAAGACTATTCTCTAAA 60.394 44.000 0.00 0.00 0.00 1.85
5061 9398 7.491048 CACAGGAAGACTATTCTCTAAAAGAGC 59.509 40.741 0.00 0.00 42.04 4.09
5125 9462 7.633621 ACGAAGTGCACATAATATCTTGATTG 58.366 34.615 21.04 0.00 42.51 2.67
5276 9630 1.073923 ACATCTGACAAACACCCCCTC 59.926 52.381 0.00 0.00 0.00 4.30
5323 9677 6.596309 ATGAATATGATAGCGTCTTCAGGA 57.404 37.500 7.05 0.00 32.03 3.86
5346 9700 4.401925 TCAGTCTCAGTCAGTCAATCTCA 58.598 43.478 0.00 0.00 0.00 3.27
5350 9704 4.458989 GTCTCAGTCAGTCAATCTCAGTCT 59.541 45.833 0.00 0.00 0.00 3.24
5351 9705 4.699735 TCTCAGTCAGTCAATCTCAGTCTC 59.300 45.833 0.00 0.00 0.00 3.36
5352 9706 4.401925 TCAGTCAGTCAATCTCAGTCTCA 58.598 43.478 0.00 0.00 0.00 3.27
5354 9708 4.218200 CAGTCAGTCAATCTCAGTCTCAGT 59.782 45.833 0.00 0.00 0.00 3.41
5355 9709 4.458989 AGTCAGTCAATCTCAGTCTCAGTC 59.541 45.833 0.00 0.00 0.00 3.51
5357 9711 4.458642 TCAGTCAATCTCAGTCTCAGTCAG 59.541 45.833 0.00 0.00 0.00 3.51
5360 9714 4.217334 GTCAATCTCAGTCTCAGTCAGTCA 59.783 45.833 0.00 0.00 0.00 3.41
5361 9715 4.829492 TCAATCTCAGTCTCAGTCAGTCAA 59.171 41.667 0.00 0.00 0.00 3.18
5362 9716 5.479724 TCAATCTCAGTCTCAGTCAGTCAAT 59.520 40.000 0.00 0.00 0.00 2.57
5363 9717 5.581126 ATCTCAGTCTCAGTCAGTCAATC 57.419 43.478 0.00 0.00 0.00 2.67
5364 9718 4.661222 TCTCAGTCTCAGTCAGTCAATCT 58.339 43.478 0.00 0.00 0.00 2.40
5409 9763 2.890371 CCTCCATTTGCTGCAGCC 59.110 61.111 34.64 17.82 41.18 4.85
5588 10084 1.240256 TTTTCGTGGACCATTTCCCG 58.760 50.000 0.00 0.00 45.17 5.14
5596 10092 3.069016 GTGGACCATTTCCCGTTTCTTTT 59.931 43.478 0.00 0.00 45.17 2.27
5649 10147 8.184192 CGTTTTCTGCTCCATCTTTATTTATGT 58.816 33.333 0.00 0.00 0.00 2.29
5673 10198 8.938906 TGTTTTTACTTATTCGGTGAAGATACC 58.061 33.333 0.00 0.00 37.37 2.73
5674 10199 8.393366 GTTTTTACTTATTCGGTGAAGATACCC 58.607 37.037 0.00 0.00 37.44 3.69
5675 10200 7.427989 TTTACTTATTCGGTGAAGATACCCT 57.572 36.000 0.00 0.00 37.44 4.34
5676 10201 8.537728 TTTACTTATTCGGTGAAGATACCCTA 57.462 34.615 0.00 0.00 37.44 3.53
5677 10202 6.651975 ACTTATTCGGTGAAGATACCCTAG 57.348 41.667 0.00 0.00 37.44 3.02
5678 10203 6.371278 ACTTATTCGGTGAAGATACCCTAGA 58.629 40.000 0.00 0.00 37.44 2.43
5679 10204 6.837568 ACTTATTCGGTGAAGATACCCTAGAA 59.162 38.462 0.00 0.00 37.44 2.10
5680 10205 7.343833 ACTTATTCGGTGAAGATACCCTAGAAA 59.656 37.037 0.00 0.00 37.44 2.52
5681 10206 6.555463 ATTCGGTGAAGATACCCTAGAAAA 57.445 37.500 0.00 0.00 37.44 2.29
5682 10207 5.334724 TCGGTGAAGATACCCTAGAAAAC 57.665 43.478 0.00 0.00 37.44 2.43
5683 10208 5.021458 TCGGTGAAGATACCCTAGAAAACT 58.979 41.667 0.00 0.00 37.44 2.66
5684 10209 5.482878 TCGGTGAAGATACCCTAGAAAACTT 59.517 40.000 0.00 0.00 37.44 2.66
5685 10210 6.013984 TCGGTGAAGATACCCTAGAAAACTTT 60.014 38.462 0.00 0.00 37.44 2.66
5686 10211 6.653740 CGGTGAAGATACCCTAGAAAACTTTT 59.346 38.462 0.00 0.00 37.44 2.27
5687 10212 7.148457 CGGTGAAGATACCCTAGAAAACTTTTC 60.148 40.741 6.18 6.18 37.44 2.29
5688 10213 7.148457 GGTGAAGATACCCTAGAAAACTTTTCG 60.148 40.741 8.32 0.00 34.56 3.46
5689 10214 6.877322 TGAAGATACCCTAGAAAACTTTTCGG 59.123 38.462 8.32 6.81 0.00 4.30
5690 10215 6.370186 AGATACCCTAGAAAACTTTTCGGT 57.630 37.500 13.60 13.60 0.00 4.69
5691 10216 6.171213 AGATACCCTAGAAAACTTTTCGGTG 58.829 40.000 16.62 8.73 0.00 4.94
5692 10217 4.426736 ACCCTAGAAAACTTTTCGGTGA 57.573 40.909 10.05 0.00 0.00 4.02
5693 10218 4.784177 ACCCTAGAAAACTTTTCGGTGAA 58.216 39.130 10.05 0.00 0.00 3.18
5694 10219 4.820173 ACCCTAGAAAACTTTTCGGTGAAG 59.180 41.667 10.05 4.95 0.00 3.02
5797 10329 9.804758 ACGGATAACTTTTTCAAACACATAAAA 57.195 25.926 0.00 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 1842 6.151312 GTCCTATTCGGAATCTAGTGCAGATA 59.849 42.308 6.49 0.00 43.56 1.98
111 1900 1.328680 CATGTCTGTTCTATGTGCCGC 59.671 52.381 0.00 0.00 0.00 6.53
156 1947 2.492088 AGGCAAATTAAGCTTCCGAACC 59.508 45.455 0.00 0.00 0.00 3.62
172 1963 6.888105 TCTGATGACATGAACTAATAGGCAA 58.112 36.000 0.00 0.00 0.00 4.52
181 1972 4.038522 CCGTATCCTCTGATGACATGAACT 59.961 45.833 0.00 0.00 32.18 3.01
183 1974 3.243873 GCCGTATCCTCTGATGACATGAA 60.244 47.826 0.00 0.00 32.18 2.57
214 2005 0.441533 GTGACGTGAGATTGCAGCAG 59.558 55.000 0.00 0.00 0.00 4.24
215 2006 0.950555 GGTGACGTGAGATTGCAGCA 60.951 55.000 0.00 0.00 0.00 4.41
216 2007 0.671781 AGGTGACGTGAGATTGCAGC 60.672 55.000 0.00 0.00 0.00 5.25
217 2008 2.094494 ACTAGGTGACGTGAGATTGCAG 60.094 50.000 0.00 0.00 0.00 4.41
237 2028 5.625150 AGGACAGAATATGGCTCCATAAAC 58.375 41.667 12.17 9.32 41.53 2.01
242 2033 4.272489 CAAAAGGACAGAATATGGCTCCA 58.728 43.478 0.00 0.00 36.99 3.86
244 2035 3.950395 AGCAAAAGGACAGAATATGGCTC 59.050 43.478 0.00 0.00 36.99 4.70
245 2036 3.698040 CAGCAAAAGGACAGAATATGGCT 59.302 43.478 0.00 0.00 36.99 4.75
246 2037 3.696051 TCAGCAAAAGGACAGAATATGGC 59.304 43.478 0.00 0.00 35.46 4.40
247 2038 4.337555 CCTCAGCAAAAGGACAGAATATGG 59.662 45.833 0.00 0.00 35.83 2.74
248 2039 4.201990 GCCTCAGCAAAAGGACAGAATATG 60.202 45.833 3.44 0.00 39.53 1.78
249 2040 3.950395 GCCTCAGCAAAAGGACAGAATAT 59.050 43.478 3.44 0.00 39.53 1.28
251 2042 2.165998 GCCTCAGCAAAAGGACAGAAT 58.834 47.619 3.44 0.00 39.53 2.40
252 2043 1.609208 GCCTCAGCAAAAGGACAGAA 58.391 50.000 3.44 0.00 39.53 3.02
253 2044 0.603707 CGCCTCAGCAAAAGGACAGA 60.604 55.000 3.44 0.00 39.83 3.41
254 2045 1.871772 CGCCTCAGCAAAAGGACAG 59.128 57.895 3.44 0.00 39.83 3.51
256 2047 2.563427 GCGCCTCAGCAAAAGGAC 59.437 61.111 0.00 0.00 39.83 3.85
257 2048 3.049674 CGCGCCTCAGCAAAAGGA 61.050 61.111 0.00 0.00 39.83 3.36
258 2049 3.031964 CTCGCGCCTCAGCAAAAGG 62.032 63.158 0.00 0.00 39.83 3.11
260 2051 2.029288 CTCTCGCGCCTCAGCAAAA 61.029 57.895 0.00 0.00 39.83 2.44
261 2052 2.433145 CTCTCGCGCCTCAGCAAA 60.433 61.111 0.00 0.00 39.83 3.68
271 2062 2.353607 GTATCGTGGCCTCTCGCG 60.354 66.667 3.32 0.00 41.41 5.87
273 2064 1.655329 GGAGTATCGTGGCCTCTCG 59.345 63.158 3.32 6.77 34.37 4.04
274 2065 1.655329 CGGAGTATCGTGGCCTCTC 59.345 63.158 3.32 2.45 34.37 3.20
275 2066 1.828660 CCGGAGTATCGTGGCCTCT 60.829 63.158 3.32 0.00 34.37 3.69
276 2067 2.728817 CCGGAGTATCGTGGCCTC 59.271 66.667 3.32 0.00 34.37 4.70
280 2071 2.025727 GTCGCCGGAGTATCGTGG 59.974 66.667 5.05 0.00 34.37 4.94
281 2072 2.025727 GGTCGCCGGAGTATCGTG 59.974 66.667 5.05 0.00 34.37 4.35
283 2074 2.331805 CTGGTCGCCGGAGTATCG 59.668 66.667 5.05 0.00 34.37 2.92
284 2075 2.728817 CCTGGTCGCCGGAGTATC 59.271 66.667 5.05 0.00 29.82 2.24
285 2076 3.537874 GCCTGGTCGCCGGAGTAT 61.538 66.667 5.05 0.00 29.82 2.12
306 2209 2.877691 GCTGTTCCGGTTGATGCC 59.122 61.111 0.00 0.00 0.00 4.40
307 2210 1.573829 TTCGCTGTTCCGGTTGATGC 61.574 55.000 0.00 0.00 0.00 3.91
309 2212 1.737793 GATTTCGCTGTTCCGGTTGAT 59.262 47.619 0.00 0.00 0.00 2.57
310 2213 1.153353 GATTTCGCTGTTCCGGTTGA 58.847 50.000 0.00 0.00 0.00 3.18
315 2218 1.193650 TCGTTTGATTTCGCTGTTCCG 59.806 47.619 0.00 0.00 0.00 4.30
316 2219 2.961522 TCGTTTGATTTCGCTGTTCC 57.038 45.000 0.00 0.00 0.00 3.62
317 2220 5.806089 AATTTCGTTTGATTTCGCTGTTC 57.194 34.783 0.00 0.00 0.00 3.18
318 2221 6.254589 TCAAAATTTCGTTTGATTTCGCTGTT 59.745 30.769 0.00 0.00 41.45 3.16
341 2244 1.271379 ACTGCTACGTTGAACCGATCA 59.729 47.619 0.00 0.00 35.85 2.92
385 2397 7.663493 GGCTTTCTGTAGGCATATCTATCTTTT 59.337 37.037 0.00 0.00 40.23 2.27
389 2401 6.042638 TGGCTTTCTGTAGGCATATCTATC 57.957 41.667 0.00 0.00 44.68 2.08
444 2457 2.223711 GCGATTGTCACTGGTTGGTTTT 60.224 45.455 0.00 0.00 0.00 2.43
446 2459 0.951558 GCGATTGTCACTGGTTGGTT 59.048 50.000 0.00 0.00 0.00 3.67
520 2536 6.327386 AGAACAGAGACTAGGAGAGAGAAT 57.673 41.667 0.00 0.00 0.00 2.40
552 2568 9.245962 CCTTCGTCTCATAATATAAAAGAACGT 57.754 33.333 0.00 0.00 0.00 3.99
553 2569 8.700644 CCCTTCGTCTCATAATATAAAAGAACG 58.299 37.037 0.00 0.00 0.00 3.95
555 2571 9.982651 CTCCCTTCGTCTCATAATATAAAAGAA 57.017 33.333 0.00 0.00 0.00 2.52
556 2572 9.144298 ACTCCCTTCGTCTCATAATATAAAAGA 57.856 33.333 0.00 0.00 0.00 2.52
566 2582 8.800332 GGTATTAAATACTCCCTTCGTCTCATA 58.200 37.037 0.00 0.00 36.04 2.15
567 2583 7.509659 AGGTATTAAATACTCCCTTCGTCTCAT 59.490 37.037 0.00 0.00 36.04 2.90
568 2584 6.837568 AGGTATTAAATACTCCCTTCGTCTCA 59.162 38.462 0.00 0.00 36.04 3.27
569 2585 7.287512 AGGTATTAAATACTCCCTTCGTCTC 57.712 40.000 0.00 0.00 36.04 3.36
570 2586 8.773033 TTAGGTATTAAATACTCCCTTCGTCT 57.227 34.615 0.00 0.00 36.04 4.18
571 2587 9.636879 GATTAGGTATTAAATACTCCCTTCGTC 57.363 37.037 0.00 0.00 36.04 4.20
572 2588 9.151177 TGATTAGGTATTAAATACTCCCTTCGT 57.849 33.333 0.00 0.00 36.04 3.85
573 2589 9.991906 TTGATTAGGTATTAAATACTCCCTTCG 57.008 33.333 0.00 0.00 36.04 3.79
619 2701 1.323271 TACTGGCAGCGAGGAAGAGG 61.323 60.000 15.89 0.00 0.00 3.69
624 2729 1.185618 AGTTGTACTGGCAGCGAGGA 61.186 55.000 15.89 0.00 0.00 3.71
625 2730 0.530744 TAGTTGTACTGGCAGCGAGG 59.469 55.000 15.89 0.00 0.00 4.63
629 2734 4.995487 ACTAAAACTAGTTGTACTGGCAGC 59.005 41.667 15.89 0.00 28.76 5.25
757 4239 6.317391 TCCTCCGAGGTTTAAAAACGTTTTTA 59.683 34.615 32.10 32.10 39.77 1.52
778 4260 3.059529 GCTCGCCGAATTAAAATCTCCTC 60.060 47.826 0.00 0.00 0.00 3.71
779 4261 2.872858 GCTCGCCGAATTAAAATCTCCT 59.127 45.455 0.00 0.00 0.00 3.69
780 4262 2.612212 TGCTCGCCGAATTAAAATCTCC 59.388 45.455 0.00 0.00 0.00 3.71
781 4263 3.846383 GCTGCTCGCCGAATTAAAATCTC 60.846 47.826 0.00 0.00 0.00 2.75
782 4264 2.032178 GCTGCTCGCCGAATTAAAATCT 59.968 45.455 0.00 0.00 0.00 2.40
783 4265 2.032178 AGCTGCTCGCCGAATTAAAATC 59.968 45.455 0.00 0.00 40.39 2.17
789 4287 0.175760 TTCTAGCTGCTCGCCGAATT 59.824 50.000 4.91 0.00 40.39 2.17
793 4291 0.458543 TTCTTTCTAGCTGCTCGCCG 60.459 55.000 4.91 0.00 40.39 6.46
819 4317 3.396560 TGAGAGCAACAACTGATGTGAG 58.603 45.455 0.00 0.00 42.99 3.51
828 4326 1.661112 GGTAGCGATGAGAGCAACAAC 59.339 52.381 0.00 0.00 37.01 3.32
829 4327 1.735700 CGGTAGCGATGAGAGCAACAA 60.736 52.381 9.07 0.00 37.01 2.83
831 4329 0.179134 ACGGTAGCGATGAGAGCAAC 60.179 55.000 22.88 0.00 37.01 4.17
832 4330 0.100682 GACGGTAGCGATGAGAGCAA 59.899 55.000 22.88 0.00 37.01 3.91
833 4331 1.725557 GGACGGTAGCGATGAGAGCA 61.726 60.000 22.88 0.00 37.01 4.26
852 4358 5.406477 GGCTTACTTTTGGCTGAAATTTGAG 59.594 40.000 0.00 0.00 0.00 3.02
861 4367 1.000843 GGTTGGGCTTACTTTTGGCTG 59.999 52.381 0.00 0.00 0.00 4.85
878 4389 2.739379 CGTTTTTGCAAAGGTGTTGGTT 59.261 40.909 12.41 0.00 0.00 3.67
1404 4928 2.426522 CGGATTTGAGGAAGTGCTTCA 58.573 47.619 13.16 0.00 41.20 3.02
1411 4935 1.945394 CATGAGGCGGATTTGAGGAAG 59.055 52.381 0.00 0.00 0.00 3.46
1420 4944 3.171388 GGGGTCCATGAGGCGGAT 61.171 66.667 0.00 0.00 34.32 4.18
1431 4955 1.451936 CTCCATGGATTCGGGGTCC 59.548 63.158 16.63 0.00 36.26 4.46
1523 5047 1.128200 TGGTAGAGTGCAACACCTGT 58.872 50.000 0.00 0.00 41.43 4.00
1606 5166 3.493350 GGACAGACAGTGTGTTCTGACAT 60.493 47.826 15.32 0.00 40.56 3.06
1629 5191 5.468746 CGAAAATGTTTCCTAACCTGACAGA 59.531 40.000 3.32 0.00 33.15 3.41
1630 5192 5.468746 TCGAAAATGTTTCCTAACCTGACAG 59.531 40.000 0.00 0.00 33.15 3.51
1631 5193 5.369833 TCGAAAATGTTTCCTAACCTGACA 58.630 37.500 0.00 0.00 33.15 3.58
1632 5194 5.934935 TCGAAAATGTTTCCTAACCTGAC 57.065 39.130 0.00 0.00 33.15 3.51
1634 5196 7.119846 AGAGAATCGAAAATGTTTCCTAACCTG 59.880 37.037 0.00 0.00 42.67 4.00
1635 5197 7.168905 AGAGAATCGAAAATGTTTCCTAACCT 58.831 34.615 0.00 0.00 42.67 3.50
1636 5198 7.379098 AGAGAATCGAAAATGTTTCCTAACC 57.621 36.000 0.00 0.00 42.67 2.85
1681 5286 4.051237 CGCATCAGCAACAGTATAGCTAA 58.949 43.478 0.00 0.00 42.27 3.09
1822 5430 6.245408 TGGATGTATCTAGCACCAAGTTTTT 58.755 36.000 0.00 0.00 0.00 1.94
1823 5431 5.815581 TGGATGTATCTAGCACCAAGTTTT 58.184 37.500 0.00 0.00 0.00 2.43
1824 5432 5.435686 TGGATGTATCTAGCACCAAGTTT 57.564 39.130 0.00 0.00 0.00 2.66
1825 5433 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
1826 5434 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
1827 5435 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
1828 5436 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
1829 5437 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
1830 5438 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
1831 5439 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
1832 5440 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
1833 5441 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
1834 5442 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
1835 5443 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
1836 5444 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
1837 5445 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
1838 5446 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
1839 5447 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
1840 5448 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
1841 5449 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
1842 5450 3.094572 CAAGCTTGTCCCTCAAATGGAT 58.905 45.455 18.65 0.00 35.48 3.41
1843 5451 2.517959 CAAGCTTGTCCCTCAAATGGA 58.482 47.619 18.65 0.00 35.48 3.41
1844 5452 1.547372 CCAAGCTTGTCCCTCAAATGG 59.453 52.381 24.35 1.81 35.48 3.16
1845 5453 1.547372 CCCAAGCTTGTCCCTCAAATG 59.453 52.381 24.35 5.47 35.48 2.32
1846 5454 1.428912 TCCCAAGCTTGTCCCTCAAAT 59.571 47.619 24.35 0.00 35.48 2.32
1847 5455 0.850100 TCCCAAGCTTGTCCCTCAAA 59.150 50.000 24.35 0.00 35.48 2.69
1848 5456 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.00 34.61 3.02
1849 5457 1.059584 TGTCCCAAGCTTGTCCCTCA 61.060 55.000 24.35 12.85 0.00 3.86
1850 5458 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.000 24.35 10.65 0.00 4.30
1851 5459 0.555769 TTTGTCCCAAGCTTGTCCCT 59.444 50.000 24.35 0.00 0.00 4.20
1852 5460 0.673985 GTTTGTCCCAAGCTTGTCCC 59.326 55.000 24.35 11.81 0.00 4.46
1853 5461 1.692411 AGTTTGTCCCAAGCTTGTCC 58.308 50.000 24.35 12.15 0.00 4.02
1854 5462 3.801114 AAAGTTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
1855 5463 4.503910 GAAAAAGTTTGTCCCAAGCTTGT 58.496 39.130 24.35 1.28 0.00 3.16
1856 5464 3.551485 CGAAAAAGTTTGTCCCAAGCTTG 59.449 43.478 19.93 19.93 0.00 4.01
1857 5465 3.430236 CCGAAAAAGTTTGTCCCAAGCTT 60.430 43.478 0.00 0.00 0.00 3.74
1858 5466 2.100749 CCGAAAAAGTTTGTCCCAAGCT 59.899 45.455 0.00 0.00 0.00 3.74
1859 5467 2.100087 TCCGAAAAAGTTTGTCCCAAGC 59.900 45.455 0.00 0.00 0.00 4.01
1860 5468 3.702330 GTCCGAAAAAGTTTGTCCCAAG 58.298 45.455 0.00 0.00 0.00 3.61
1861 5469 2.097791 CGTCCGAAAAAGTTTGTCCCAA 59.902 45.455 0.00 0.00 0.00 4.12
1862 5470 1.671845 CGTCCGAAAAAGTTTGTCCCA 59.328 47.619 0.00 0.00 0.00 4.37
1863 5471 1.002142 CCGTCCGAAAAAGTTTGTCCC 60.002 52.381 0.00 0.00 0.00 4.46
1864 5472 1.941975 TCCGTCCGAAAAAGTTTGTCC 59.058 47.619 0.00 0.00 0.00 4.02
1865 5473 2.032290 CCTCCGTCCGAAAAAGTTTGTC 60.032 50.000 0.00 0.00 0.00 3.18
1866 5474 1.944709 CCTCCGTCCGAAAAAGTTTGT 59.055 47.619 0.00 0.00 0.00 2.83
1867 5475 1.265905 CCCTCCGTCCGAAAAAGTTTG 59.734 52.381 0.00 0.00 0.00 2.93
1868 5476 1.141455 TCCCTCCGTCCGAAAAAGTTT 59.859 47.619 0.00 0.00 0.00 2.66
1869 5477 0.760572 TCCCTCCGTCCGAAAAAGTT 59.239 50.000 0.00 0.00 0.00 2.66
1870 5478 0.320697 CTCCCTCCGTCCGAAAAAGT 59.679 55.000 0.00 0.00 0.00 2.66
1871 5479 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
1872 5480 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
1873 5481 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1874 5482 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
1875 5483 1.753073 GAAATACTCCCTCCGTCCGAA 59.247 52.381 0.00 0.00 0.00 4.30
1876 5484 1.064166 AGAAATACTCCCTCCGTCCGA 60.064 52.381 0.00 0.00 0.00 4.55
1877 5485 1.337387 GAGAAATACTCCCTCCGTCCG 59.663 57.143 0.00 0.00 39.53 4.79
1887 5495 4.667519 TCTTTAGCCGGGAGAAATACTC 57.332 45.455 2.18 0.00 44.24 2.59
1888 5496 4.743955 GCATCTTTAGCCGGGAGAAATACT 60.744 45.833 2.18 0.00 0.00 2.12
1889 5497 3.498777 GCATCTTTAGCCGGGAGAAATAC 59.501 47.826 2.18 0.00 0.00 1.89
1890 5498 3.135712 TGCATCTTTAGCCGGGAGAAATA 59.864 43.478 2.18 0.00 0.00 1.40
1891 5499 2.092429 TGCATCTTTAGCCGGGAGAAAT 60.092 45.455 2.18 0.00 0.00 2.17
2073 5686 2.026636 GTGCCTAGATGGGGTTACAACA 60.027 50.000 0.00 0.00 36.00 3.33
2074 5687 2.238898 AGTGCCTAGATGGGGTTACAAC 59.761 50.000 0.00 0.00 36.00 3.32
2075 5688 2.504175 GAGTGCCTAGATGGGGTTACAA 59.496 50.000 0.00 0.00 36.00 2.41
2076 5689 2.116238 GAGTGCCTAGATGGGGTTACA 58.884 52.381 0.00 0.00 36.00 2.41
2077 5690 1.416772 GGAGTGCCTAGATGGGGTTAC 59.583 57.143 0.00 0.00 36.00 2.50
2078 5691 1.294068 AGGAGTGCCTAGATGGGGTTA 59.706 52.381 0.00 0.00 44.74 2.85
2254 6324 2.489329 AGTGAGAAAATGTTGCCCATCG 59.511 45.455 0.00 0.00 31.75 3.84
2255 6325 3.841643 CAGTGAGAAAATGTTGCCCATC 58.158 45.455 0.00 0.00 31.75 3.51
2371 6442 7.201776 CCCGATGAAAACACCATATTCACATAA 60.202 37.037 0.00 0.00 36.03 1.90
2374 6445 4.397730 CCCGATGAAAACACCATATTCACA 59.602 41.667 0.00 0.00 36.03 3.58
2428 6658 1.224592 CTCCGGTGATTCCCTTGGG 59.775 63.158 0.00 0.00 0.00 4.12
2555 6786 4.935808 GGGTCTAACATAGAAAGTGTGTGG 59.064 45.833 0.00 0.00 36.40 4.17
2568 6799 4.282703 ACGTTCTGTAACTGGGTCTAACAT 59.717 41.667 0.00 0.00 33.15 2.71
2590 6821 7.380333 CCGAAACTTGGAAGTGGTATTAAAAAC 59.620 37.037 0.00 0.00 39.66 2.43
2633 6864 6.677913 CAGGTGTATGTGTTTCCCTTTTTAG 58.322 40.000 0.00 0.00 0.00 1.85
2666 6928 4.335416 GCAGGAAAGCAGGGCATAATATA 58.665 43.478 0.00 0.00 0.00 0.86
2880 7142 4.632153 GTTCTTTCTACTCTCACTGGCAA 58.368 43.478 0.00 0.00 0.00 4.52
2890 7152 6.106673 TCCCATTGATTCGTTCTTTCTACTC 58.893 40.000 0.00 0.00 0.00 2.59
2996 7258 8.620416 CATGCATAAGTAGGCAACAAGTAATAA 58.380 33.333 0.00 0.00 46.54 1.40
3052 7314 9.921637 TTCCCAAATATCAAATTAACTCAACAC 57.078 29.630 0.00 0.00 0.00 3.32
3266 7528 5.567138 AGTAGAAATGTGTAGCAATTGGC 57.433 39.130 7.72 0.00 45.30 4.52
3272 7534 7.390440 AGCATGTAAAAGTAGAAATGTGTAGCA 59.610 33.333 0.00 0.00 0.00 3.49
3273 7535 7.752695 AGCATGTAAAAGTAGAAATGTGTAGC 58.247 34.615 0.00 0.00 0.00 3.58
3297 7559 9.754382 AAGAAATGCCATTACTGCAATATTTAG 57.246 29.630 0.00 0.00 42.92 1.85
3342 7604 1.421646 GGTGCCTGCAATAGTATCCCT 59.578 52.381 0.00 0.00 0.00 4.20
3403 7665 6.344500 TCTTCTTCCTTGCAGATATCTGTTC 58.656 40.000 28.92 16.60 45.45 3.18
3480 7742 6.605471 ATTGTTTTAAATGAGTTCTCCCCC 57.395 37.500 0.00 0.00 0.00 5.40
3481 7743 7.666623 TCAATTGTTTTAAATGAGTTCTCCCC 58.333 34.615 5.13 0.00 0.00 4.81
3482 7744 8.360390 ACTCAATTGTTTTAAATGAGTTCTCCC 58.640 33.333 13.26 0.00 30.52 4.30
3791 8080 4.457257 GTGCATAGAAACTTCCAGAAAGCT 59.543 41.667 0.00 0.00 38.67 3.74
3969 8279 5.335426 CCCATTCAATTCTCGCCATATGAAG 60.335 44.000 3.65 0.00 31.14 3.02
4269 8582 8.539544 TGAATGGTAGATTCTTCACTGTTATCA 58.460 33.333 0.00 0.00 0.00 2.15
4394 8707 6.082338 CAGCAATCAAACACATGAGAGTAAC 58.918 40.000 0.00 0.00 31.76 2.50
4404 8717 2.102252 GGAAACCCAGCAATCAAACACA 59.898 45.455 0.00 0.00 0.00 3.72
4889 9211 2.912771 TCTTGTTTTCCAACTGCTCGA 58.087 42.857 0.00 0.00 33.58 4.04
4890 9212 3.904136 ATCTTGTTTTCCAACTGCTCG 57.096 42.857 0.00 0.00 33.58 5.03
4987 9320 4.248859 CACAACAACAAAAACACCCATCA 58.751 39.130 0.00 0.00 0.00 3.07
5016 9353 1.761174 CCGCTATGGCCTAATGGGT 59.239 57.895 3.32 0.00 37.43 4.51
5044 9381 7.179338 TCAACAGAGGCTCTTTTAGAGAATAGT 59.821 37.037 15.90 1.87 45.07 2.12
5056 9393 2.965831 TGTACACTCAACAGAGGCTCTT 59.034 45.455 15.90 3.76 33.61 2.85
5276 9630 4.111255 TCATATCAGGAGGGAGTGAGAG 57.889 50.000 0.00 0.00 0.00 3.20
5323 9677 5.015515 TGAGATTGACTGACTGAGACTGAT 58.984 41.667 0.00 0.00 0.00 2.90
5346 9700 3.763360 CAGGAGATTGACTGACTGAGACT 59.237 47.826 0.00 0.00 36.86 3.24
5354 9708 1.474478 GCTCGTCAGGAGATTGACTGA 59.526 52.381 0.00 0.00 46.23 3.41
5355 9709 1.470632 GGCTCGTCAGGAGATTGACTG 60.471 57.143 0.00 0.00 46.23 3.51
5357 9711 0.820871 AGGCTCGTCAGGAGATTGAC 59.179 55.000 0.00 0.00 46.23 3.18
5360 9714 0.820871 GTGAGGCTCGTCAGGAGATT 59.179 55.000 10.42 0.00 46.23 2.40
5361 9715 1.040339 GGTGAGGCTCGTCAGGAGAT 61.040 60.000 10.42 0.00 46.23 2.75
5362 9716 1.679305 GGTGAGGCTCGTCAGGAGA 60.679 63.158 10.42 0.00 46.23 3.71
5363 9717 1.254284 AAGGTGAGGCTCGTCAGGAG 61.254 60.000 10.42 0.00 46.06 3.69
5364 9718 1.228894 AAGGTGAGGCTCGTCAGGA 60.229 57.895 10.42 0.00 0.00 3.86
5409 9763 1.135689 CATTCGGGAAGCAACCTTTCG 60.136 52.381 0.00 0.00 32.86 3.46
5649 10147 8.323567 AGGGTATCTTCACCGAATAAGTAAAAA 58.676 33.333 0.00 0.00 39.69 1.94
5669 10194 6.117975 TCACCGAAAAGTTTTCTAGGGTAT 57.882 37.500 22.57 3.30 0.00 2.73
5670 10195 5.549742 TCACCGAAAAGTTTTCTAGGGTA 57.450 39.130 22.57 9.62 0.00 3.69
5671 10196 4.426736 TCACCGAAAAGTTTTCTAGGGT 57.573 40.909 22.57 19.25 0.00 4.34
5672 10197 4.820173 ACTTCACCGAAAAGTTTTCTAGGG 59.180 41.667 22.57 18.71 33.19 3.53
5673 10198 6.373186 AACTTCACCGAAAAGTTTTCTAGG 57.627 37.500 22.57 19.29 42.74 3.02
5771 10296 9.804758 TTTTATGTGTTTGAAAAAGTTATCCGT 57.195 25.926 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.