Multiple sequence alignment - TraesCS2A01G029700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G029700 chr2A 100.000 4769 0 0 1 4769 13255605 13250837 0.000000e+00 8807.0
1 TraesCS2A01G029700 chr2A 82.061 262 32 6 5 251 767383256 767383517 4.840000e-50 209.0
2 TraesCS2A01G029700 chr2B 93.852 2082 76 17 356 2417 19412877 19414926 0.000000e+00 3088.0
3 TraesCS2A01G029700 chr2B 94.898 1568 51 11 2418 3975 19414960 19416508 0.000000e+00 2425.0
4 TraesCS2A01G029700 chr2B 85.947 491 63 5 3975 4461 19416565 19417053 1.970000e-143 520.0
5 TraesCS2A01G029700 chr2B 86.667 315 32 4 4465 4769 19417327 19417641 1.640000e-89 340.0
6 TraesCS2A01G029700 chr2B 80.524 267 36 10 3 253 746719776 746719510 1.750000e-44 191.0
7 TraesCS2A01G029700 chr2B 74.812 266 61 6 1645 1907 20274896 20274634 1.080000e-21 115.0
8 TraesCS2A01G029700 chr2B 71.986 282 73 6 1629 1907 22725179 22725457 1.420000e-10 78.7
9 TraesCS2A01G029700 chr7B 78.652 267 39 8 3 251 18315488 18315222 1.370000e-35 161.0
10 TraesCS2A01G029700 chr7B 75.397 252 45 11 4469 4707 181215324 181215571 6.530000e-19 106.0
11 TraesCS2A01G029700 chr7B 93.333 60 4 0 3 62 229480168 229480227 6.570000e-14 89.8
12 TraesCS2A01G029700 chr3A 79.399 233 37 6 4014 4236 537734761 537734530 2.300000e-33 154.0
13 TraesCS2A01G029700 chr3A 75.904 249 49 8 11 251 516295871 516295626 3.020000e-22 117.0
14 TraesCS2A01G029700 chr3A 95.122 41 2 0 4079 4119 453930014 453929974 1.110000e-06 65.8
15 TraesCS2A01G029700 chr3A 84.058 69 8 3 187 253 505014714 505014647 3.980000e-06 63.9
16 TraesCS2A01G029700 chr6D 81.218 197 29 5 4038 4227 148175333 148175138 8.270000e-33 152.0
17 TraesCS2A01G029700 chr6D 76.285 253 47 8 4469 4709 234417997 234418248 6.480000e-24 122.0
18 TraesCS2A01G029700 chr6D 76.289 194 26 13 13 188 25674723 25674532 8.500000e-13 86.1
19 TraesCS2A01G029700 chr1B 80.282 213 31 7 4038 4241 26268753 26268963 2.970000e-32 150.0
20 TraesCS2A01G029700 chr1B 75.556 225 40 10 4463 4676 666561658 666561438 3.930000e-16 97.1
21 TraesCS2A01G029700 chr1B 90.476 42 4 0 4368 4409 401339232 401339273 6.670000e-04 56.5
22 TraesCS2A01G029700 chr5B 77.907 258 40 9 9 251 359303011 359303266 1.380000e-30 145.0
23 TraesCS2A01G029700 chr5D 79.426 209 25 8 3 195 380856300 380856094 1.080000e-26 132.0
24 TraesCS2A01G029700 chr5D 76.923 260 41 12 4463 4707 474222051 474221796 3.870000e-26 130.0
25 TraesCS2A01G029700 chr5D 89.796 49 5 0 4022 4070 484295576 484295624 3.980000e-06 63.9
26 TraesCS2A01G029700 chr4B 77.551 245 38 11 4469 4707 281023654 281023421 1.080000e-26 132.0
27 TraesCS2A01G029700 chr4B 74.627 201 38 8 4485 4674 656119415 656119217 5.120000e-10 76.8
28 TraesCS2A01G029700 chrUn 78.095 210 34 9 4021 4228 95448237 95448436 6.480000e-24 122.0
29 TraesCS2A01G029700 chr6B 84.553 123 17 2 4480 4602 39174983 39175103 2.330000e-23 121.0
30 TraesCS2A01G029700 chr6B 96.226 53 1 1 5 56 14870427 14870479 8.500000e-13 86.1
31 TraesCS2A01G029700 chr1D 76.667 240 43 8 4480 4708 255485032 255484795 2.330000e-23 121.0
32 TraesCS2A01G029700 chr1D 92.857 42 3 0 4368 4409 298344494 298344535 1.430000e-05 62.1
33 TraesCS2A01G029700 chr6A 77.103 214 35 9 4472 4673 169888415 169888204 1.400000e-20 111.0
34 TraesCS2A01G029700 chr6A 90.385 52 3 2 4357 4408 168086921 168086872 3.080000e-07 67.6
35 TraesCS2A01G029700 chr6A 97.222 36 1 0 4638 4673 79415397 79415432 1.430000e-05 62.1
36 TraesCS2A01G029700 chr2D 89.024 82 9 0 4072 4153 640583797 640583716 8.440000e-18 102.0
37 TraesCS2A01G029700 chr2D 79.200 125 24 2 4474 4597 249273226 249273349 8.500000e-13 86.1
38 TraesCS2A01G029700 chr2D 88.525 61 7 0 4069 4129 509751378 509751438 1.840000e-09 75.0
39 TraesCS2A01G029700 chr2D 100.000 31 0 0 4022 4052 569347164 569347134 1.850000e-04 58.4
40 TraesCS2A01G029700 chr4D 80.488 123 22 2 4480 4602 96154940 96155060 5.080000e-15 93.5
41 TraesCS2A01G029700 chr4D 78.788 132 26 2 4470 4600 197983559 197983689 2.360000e-13 87.9
42 TraesCS2A01G029700 chr7D 83.654 104 10 7 4481 4582 511279376 511279278 1.830000e-14 91.6
43 TraesCS2A01G029700 chr7D 89.474 57 6 0 4713 4769 216007491 216007547 6.620000e-09 73.1
44 TraesCS2A01G029700 chr3B 91.837 49 4 0 4628 4676 790544124 790544076 8.560000e-08 69.4
45 TraesCS2A01G029700 chr3B 93.478 46 2 1 269 313 603373346 603373301 3.080000e-07 67.6
46 TraesCS2A01G029700 chr3D 97.297 37 1 0 4637 4673 173485759 173485795 3.980000e-06 63.9
47 TraesCS2A01G029700 chr3D 87.037 54 7 0 4242 4295 270462720 270462773 1.430000e-05 62.1
48 TraesCS2A01G029700 chr3D 100.000 32 0 0 4022 4053 170772195 170772226 5.150000e-05 60.2
49 TraesCS2A01G029700 chr4A 100.000 29 0 0 4735 4763 482871702 482871674 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G029700 chr2A 13250837 13255605 4768 True 8807.00 8807 100.000 1 4769 1 chr2A.!!$R1 4768
1 TraesCS2A01G029700 chr2B 19412877 19417641 4764 False 1593.25 3088 90.341 356 4769 4 chr2B.!!$F2 4413

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.040781 CCGTTTGAAAATGCGGACGT 60.041 50.0 0.00 0.00 44.06 4.34 F
237 238 0.107848 ACATCCCTTTTAGTCGCCCG 60.108 55.0 0.00 0.00 0.00 6.13 F
238 239 0.107848 CATCCCTTTTAGTCGCCCGT 60.108 55.0 0.00 0.00 0.00 5.28 F
1586 1604 0.108756 AAGCTCTTCTTCGGGTACGC 60.109 55.0 0.00 0.00 40.69 4.42 F
2868 2935 0.031414 TGAGGTACCTAGGCCTTCCC 60.031 60.0 16.29 3.98 34.81 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1941 0.805614 TCCTTCTCTCGCTCTCGTTG 59.194 55.0 0.00 0.00 36.96 4.10 R
2104 2122 1.758440 ATGGTACCATCGGCGCTGAT 61.758 55.0 26.02 26.02 29.42 2.90 R
2105 2123 2.363711 GATGGTACCATCGGCGCTGA 62.364 60.0 33.48 23.40 42.55 4.26 R
3038 3108 0.179070 GTGCCCTTCCTTCTCCGATC 60.179 60.0 0.00 0.00 0.00 3.69 R
4688 5105 0.107508 CAGCCTCACCCATGGTACTG 60.108 60.0 11.73 2.94 32.11 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.520451 AATTAGGTTTAAGTGGACTTTGACC 57.480 36.000 12.63 12.63 38.70 4.02
59 60 3.473625 AGGTTTAAGTGGACTTTGACCG 58.526 45.455 13.82 0.00 41.03 4.79
60 61 2.551032 GGTTTAAGTGGACTTTGACCGG 59.449 50.000 0.00 0.00 37.40 5.28
61 62 1.886886 TTAAGTGGACTTTGACCGGC 58.113 50.000 0.00 0.00 37.40 6.13
62 63 1.053424 TAAGTGGACTTTGACCGGCT 58.947 50.000 0.00 0.00 37.40 5.52
63 64 1.053424 AAGTGGACTTTGACCGGCTA 58.947 50.000 0.00 0.00 30.82 3.93
64 65 0.320697 AGTGGACTTTGACCGGCTAC 59.679 55.000 0.00 0.00 0.00 3.58
65 66 0.320697 GTGGACTTTGACCGGCTACT 59.679 55.000 0.00 0.00 0.00 2.57
66 67 1.053424 TGGACTTTGACCGGCTACTT 58.947 50.000 0.00 0.00 0.00 2.24
67 68 2.028748 GTGGACTTTGACCGGCTACTTA 60.029 50.000 0.00 0.00 0.00 2.24
68 69 2.835764 TGGACTTTGACCGGCTACTTAT 59.164 45.455 0.00 0.00 0.00 1.73
69 70 4.025360 TGGACTTTGACCGGCTACTTATA 58.975 43.478 0.00 0.00 0.00 0.98
70 71 4.652421 TGGACTTTGACCGGCTACTTATAT 59.348 41.667 0.00 0.00 0.00 0.86
71 72 5.129815 TGGACTTTGACCGGCTACTTATATT 59.870 40.000 0.00 0.00 0.00 1.28
72 73 6.053650 GGACTTTGACCGGCTACTTATATTT 58.946 40.000 0.00 0.00 0.00 1.40
73 74 7.147689 TGGACTTTGACCGGCTACTTATATTTA 60.148 37.037 0.00 0.00 0.00 1.40
74 75 7.712205 GGACTTTGACCGGCTACTTATATTTAA 59.288 37.037 0.00 0.00 0.00 1.52
75 76 9.269453 GACTTTGACCGGCTACTTATATTTAAT 57.731 33.333 0.00 0.00 0.00 1.40
76 77 9.623000 ACTTTGACCGGCTACTTATATTTAATT 57.377 29.630 0.00 0.00 0.00 1.40
121 122 2.753989 TTCATGCCGACATATTTGCG 57.246 45.000 0.00 0.00 33.67 4.85
122 123 1.662517 TCATGCCGACATATTTGCGT 58.337 45.000 0.00 0.00 33.67 5.24
123 124 1.597195 TCATGCCGACATATTTGCGTC 59.403 47.619 0.00 0.00 33.67 5.19
124 125 1.330213 CATGCCGACATATTTGCGTCA 59.670 47.619 0.00 0.00 33.67 4.35
125 126 1.006086 TGCCGACATATTTGCGTCAG 58.994 50.000 0.00 0.00 32.24 3.51
126 127 0.316196 GCCGACATATTTGCGTCAGC 60.316 55.000 0.00 0.00 45.41 4.26
127 128 0.304705 CCGACATATTTGCGTCAGCC 59.695 55.000 0.00 0.00 44.33 4.85
128 129 1.290203 CGACATATTTGCGTCAGCCT 58.710 50.000 0.00 0.00 44.33 4.58
129 130 1.665679 CGACATATTTGCGTCAGCCTT 59.334 47.619 0.00 0.00 44.33 4.35
130 131 2.285834 CGACATATTTGCGTCAGCCTTC 60.286 50.000 0.00 0.00 44.33 3.46
131 132 2.017049 ACATATTTGCGTCAGCCTTCC 58.983 47.619 0.00 0.00 44.33 3.46
132 133 2.016318 CATATTTGCGTCAGCCTTCCA 58.984 47.619 0.00 0.00 44.33 3.53
133 134 2.418368 TATTTGCGTCAGCCTTCCAT 57.582 45.000 0.00 0.00 44.33 3.41
134 135 1.549203 ATTTGCGTCAGCCTTCCATT 58.451 45.000 0.00 0.00 44.33 3.16
135 136 0.597568 TTTGCGTCAGCCTTCCATTG 59.402 50.000 0.00 0.00 44.33 2.82
136 137 1.243342 TTGCGTCAGCCTTCCATTGG 61.243 55.000 0.00 0.00 44.33 3.16
137 138 1.377202 GCGTCAGCCTTCCATTGGA 60.377 57.895 0.00 0.00 37.42 3.53
138 139 0.749454 GCGTCAGCCTTCCATTGGAT 60.749 55.000 6.15 0.00 37.42 3.41
139 140 1.019673 CGTCAGCCTTCCATTGGATG 58.980 55.000 6.15 8.91 41.85 3.51
149 150 2.133281 CCATTGGATGGTCAAGCTGA 57.867 50.000 0.00 0.00 45.54 4.26
150 151 2.662866 CCATTGGATGGTCAAGCTGAT 58.337 47.619 0.00 0.00 45.54 2.90
151 152 2.621998 CCATTGGATGGTCAAGCTGATC 59.378 50.000 0.00 0.00 45.54 2.92
152 153 2.425143 TTGGATGGTCAAGCTGATCC 57.575 50.000 0.00 0.00 0.00 3.36
153 154 0.178767 TGGATGGTCAAGCTGATCCG 59.821 55.000 0.00 0.00 28.16 4.18
154 155 0.179000 GGATGGTCAAGCTGATCCGT 59.821 55.000 0.00 0.00 0.00 4.69
155 156 1.407437 GGATGGTCAAGCTGATCCGTT 60.407 52.381 0.00 0.00 0.00 4.44
156 157 2.359900 GATGGTCAAGCTGATCCGTTT 58.640 47.619 0.00 0.00 0.00 3.60
157 158 1.522668 TGGTCAAGCTGATCCGTTTG 58.477 50.000 7.28 7.28 0.00 2.93
158 159 1.071542 TGGTCAAGCTGATCCGTTTGA 59.928 47.619 11.42 11.42 32.76 2.69
159 160 2.151202 GGTCAAGCTGATCCGTTTGAA 58.849 47.619 15.92 1.26 36.19 2.69
160 161 2.552315 GGTCAAGCTGATCCGTTTGAAA 59.448 45.455 15.92 0.00 36.19 2.69
161 162 3.004315 GGTCAAGCTGATCCGTTTGAAAA 59.996 43.478 15.92 0.00 36.19 2.29
162 163 4.321230 GGTCAAGCTGATCCGTTTGAAAAT 60.321 41.667 15.92 0.00 36.19 1.82
163 164 4.618489 GTCAAGCTGATCCGTTTGAAAATG 59.382 41.667 15.92 0.00 36.19 2.32
164 165 3.221964 AGCTGATCCGTTTGAAAATGC 57.778 42.857 0.00 0.00 0.00 3.56
165 166 1.913403 GCTGATCCGTTTGAAAATGCG 59.087 47.619 0.00 0.00 0.00 4.73
166 167 2.518949 CTGATCCGTTTGAAAATGCGG 58.481 47.619 0.00 0.00 43.15 5.69
169 170 0.236187 TCCGTTTGAAAATGCGGACG 59.764 50.000 4.32 0.00 44.64 4.79
170 171 0.040781 CCGTTTGAAAATGCGGACGT 60.041 50.000 0.00 0.00 44.06 4.34
171 172 1.194997 CCGTTTGAAAATGCGGACGTA 59.805 47.619 0.00 0.00 44.06 3.57
172 173 2.227556 CGTTTGAAAATGCGGACGTAC 58.772 47.619 0.00 0.00 0.00 3.67
173 174 2.348685 CGTTTGAAAATGCGGACGTACA 60.349 45.455 0.00 0.00 0.00 2.90
174 175 2.953640 TTGAAAATGCGGACGTACAC 57.046 45.000 0.00 0.00 0.00 2.90
175 176 0.785378 TGAAAATGCGGACGTACACG 59.215 50.000 0.00 0.00 46.33 4.49
185 186 2.848310 CGTACACGTCCGTTTGGC 59.152 61.111 0.00 0.00 34.14 4.52
186 187 2.660612 CGTACACGTCCGTTTGGCC 61.661 63.158 0.00 0.00 34.14 5.36
187 188 2.356075 TACACGTCCGTTTGGCCG 60.356 61.111 0.00 0.00 34.14 6.13
188 189 2.854401 TACACGTCCGTTTGGCCGA 61.854 57.895 0.00 0.00 34.14 5.54
189 190 3.708734 CACGTCCGTTTGGCCGAC 61.709 66.667 0.00 0.00 34.14 4.79
190 191 4.974989 ACGTCCGTTTGGCCGACC 62.975 66.667 0.00 0.00 34.14 4.79
192 193 4.629523 GTCCGTTTGGCCGACCCA 62.630 66.667 0.00 0.00 43.51 4.51
204 205 5.740290 TGGCCGACCCAAATAAATAAAAA 57.260 34.783 0.00 0.00 41.82 1.94
205 206 5.725362 TGGCCGACCCAAATAAATAAAAAG 58.275 37.500 0.00 0.00 41.82 2.27
206 207 4.569162 GGCCGACCCAAATAAATAAAAAGC 59.431 41.667 0.00 0.00 0.00 3.51
207 208 4.266739 GCCGACCCAAATAAATAAAAAGCG 59.733 41.667 0.00 0.00 0.00 4.68
208 209 4.801516 CCGACCCAAATAAATAAAAAGCGG 59.198 41.667 0.00 0.00 0.00 5.52
209 210 5.393243 CCGACCCAAATAAATAAAAAGCGGA 60.393 40.000 0.00 0.00 34.88 5.54
210 211 5.513849 CGACCCAAATAAATAAAAAGCGGAC 59.486 40.000 0.00 0.00 0.00 4.79
211 212 6.347859 ACCCAAATAAATAAAAAGCGGACA 57.652 33.333 0.00 0.00 0.00 4.02
212 213 6.760291 ACCCAAATAAATAAAAAGCGGACAA 58.240 32.000 0.00 0.00 0.00 3.18
213 214 7.217906 ACCCAAATAAATAAAAAGCGGACAAA 58.782 30.769 0.00 0.00 0.00 2.83
214 215 7.715686 ACCCAAATAAATAAAAAGCGGACAAAA 59.284 29.630 0.00 0.00 0.00 2.44
215 216 8.012809 CCCAAATAAATAAAAAGCGGACAAAAC 58.987 33.333 0.00 0.00 0.00 2.43
216 217 7.738176 CCAAATAAATAAAAAGCGGACAAAACG 59.262 33.333 0.00 0.00 0.00 3.60
223 224 4.838959 CGGACAAAACGCACATCC 57.161 55.556 0.00 0.00 0.00 3.51
224 225 1.209127 CGGACAAAACGCACATCCC 59.791 57.895 0.00 0.00 0.00 3.85
225 226 1.234615 CGGACAAAACGCACATCCCT 61.235 55.000 0.00 0.00 0.00 4.20
226 227 0.958822 GGACAAAACGCACATCCCTT 59.041 50.000 0.00 0.00 0.00 3.95
227 228 1.339929 GGACAAAACGCACATCCCTTT 59.660 47.619 0.00 0.00 0.00 3.11
228 229 2.223947 GGACAAAACGCACATCCCTTTT 60.224 45.455 0.00 0.00 0.00 2.27
229 230 3.004944 GGACAAAACGCACATCCCTTTTA 59.995 43.478 0.00 0.00 0.00 1.52
230 231 4.226761 GACAAAACGCACATCCCTTTTAG 58.773 43.478 0.00 0.00 0.00 1.85
231 232 3.634910 ACAAAACGCACATCCCTTTTAGT 59.365 39.130 0.00 0.00 0.00 2.24
232 233 4.226761 CAAAACGCACATCCCTTTTAGTC 58.773 43.478 0.00 0.00 0.00 2.59
233 234 1.722011 ACGCACATCCCTTTTAGTCG 58.278 50.000 0.00 0.00 0.00 4.18
234 235 0.373716 CGCACATCCCTTTTAGTCGC 59.626 55.000 0.00 0.00 0.00 5.19
235 236 0.733150 GCACATCCCTTTTAGTCGCC 59.267 55.000 0.00 0.00 0.00 5.54
236 237 1.379527 CACATCCCTTTTAGTCGCCC 58.620 55.000 0.00 0.00 0.00 6.13
237 238 0.107848 ACATCCCTTTTAGTCGCCCG 60.108 55.000 0.00 0.00 0.00 6.13
238 239 0.107848 CATCCCTTTTAGTCGCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
239 240 0.616891 ATCCCTTTTAGTCGCCCGTT 59.383 50.000 0.00 0.00 0.00 4.44
240 241 0.320946 TCCCTTTTAGTCGCCCGTTG 60.321 55.000 0.00 0.00 0.00 4.10
241 242 1.303091 CCCTTTTAGTCGCCCGTTGG 61.303 60.000 0.00 0.00 0.00 3.77
242 243 0.320946 CCTTTTAGTCGCCCGTTGGA 60.321 55.000 0.00 0.00 0.00 3.53
243 244 1.076332 CTTTTAGTCGCCCGTTGGAG 58.924 55.000 0.00 0.00 0.00 3.86
244 245 0.393820 TTTTAGTCGCCCGTTGGAGT 59.606 50.000 0.00 0.00 32.47 3.85
245 246 0.393820 TTTAGTCGCCCGTTGGAGTT 59.606 50.000 0.00 0.00 32.47 3.01
246 247 0.320073 TTAGTCGCCCGTTGGAGTTG 60.320 55.000 0.00 0.00 32.47 3.16
247 248 2.775032 TAGTCGCCCGTTGGAGTTGC 62.775 60.000 0.00 0.00 32.47 4.17
248 249 3.936203 TCGCCCGTTGGAGTTGCT 61.936 61.111 0.00 0.00 32.47 3.91
249 250 3.423154 CGCCCGTTGGAGTTGCTC 61.423 66.667 0.00 0.00 0.00 4.26
250 251 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
251 252 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
252 253 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
253 254 1.439679 CCCGTTGGAGTTGCTCTTAC 58.560 55.000 0.00 0.00 0.00 2.34
254 255 1.439679 CCGTTGGAGTTGCTCTTACC 58.560 55.000 0.00 0.00 0.00 2.85
255 256 1.270625 CCGTTGGAGTTGCTCTTACCA 60.271 52.381 0.00 0.00 0.00 3.25
256 257 2.489971 CGTTGGAGTTGCTCTTACCAA 58.510 47.619 0.00 0.00 38.12 3.67
257 258 2.875933 CGTTGGAGTTGCTCTTACCAAA 59.124 45.455 0.00 0.00 41.29 3.28
258 259 3.502211 CGTTGGAGTTGCTCTTACCAAAT 59.498 43.478 0.00 0.00 41.29 2.32
259 260 4.023193 CGTTGGAGTTGCTCTTACCAAATT 60.023 41.667 0.00 0.00 41.29 1.82
260 261 5.180492 CGTTGGAGTTGCTCTTACCAAATTA 59.820 40.000 0.00 0.00 41.29 1.40
261 262 6.379386 GTTGGAGTTGCTCTTACCAAATTAC 58.621 40.000 0.00 0.00 41.29 1.89
262 263 4.693566 TGGAGTTGCTCTTACCAAATTACG 59.306 41.667 0.00 0.00 0.00 3.18
263 264 4.694037 GGAGTTGCTCTTACCAAATTACGT 59.306 41.667 0.00 0.00 0.00 3.57
264 265 5.870978 GGAGTTGCTCTTACCAAATTACGTA 59.129 40.000 0.00 0.00 0.00 3.57
265 266 6.035758 GGAGTTGCTCTTACCAAATTACGTAG 59.964 42.308 0.00 0.00 0.00 3.51
267 268 7.605449 AGTTGCTCTTACCAAATTACGTAGTA 58.395 34.615 0.00 0.00 45.11 1.82
283 284 6.603940 ACGTAGTAATGTACCCCTTTGTAA 57.396 37.500 0.00 0.00 41.94 2.41
284 285 7.003402 ACGTAGTAATGTACCCCTTTGTAAA 57.997 36.000 0.00 0.00 41.94 2.01
285 286 7.623630 ACGTAGTAATGTACCCCTTTGTAAAT 58.376 34.615 0.00 0.00 41.94 1.40
286 287 8.102676 ACGTAGTAATGTACCCCTTTGTAAATT 58.897 33.333 0.00 0.00 41.94 1.82
287 288 9.598517 CGTAGTAATGTACCCCTTTGTAAATTA 57.401 33.333 0.00 0.00 32.29 1.40
318 319 8.502161 AAAGTGTTTTGATCATTACTAAACGC 57.498 30.769 19.02 19.02 40.62 4.84
319 320 7.435068 AGTGTTTTGATCATTACTAAACGCT 57.565 32.000 21.79 21.79 43.12 5.07
320 321 7.871853 AGTGTTTTGATCATTACTAAACGCTT 58.128 30.769 21.79 11.78 44.30 4.68
321 322 8.349983 AGTGTTTTGATCATTACTAAACGCTTT 58.650 29.630 21.79 8.78 44.30 3.51
322 323 8.964150 GTGTTTTGATCATTACTAAACGCTTTT 58.036 29.630 19.23 0.00 38.91 2.27
336 337 9.740239 ACTAAACGCTTTTATATTAGTCATCGA 57.260 29.630 0.00 0.00 32.84 3.59
337 338 9.990888 CTAAACGCTTTTATATTAGTCATCGAC 57.009 33.333 0.00 0.00 0.00 4.20
338 339 8.644318 AAACGCTTTTATATTAGTCATCGACT 57.356 30.769 1.75 1.75 45.54 4.18
339 340 7.854934 ACGCTTTTATATTAGTCATCGACTC 57.145 36.000 0.00 0.00 42.40 3.36
340 341 7.649973 ACGCTTTTATATTAGTCATCGACTCT 58.350 34.615 0.00 0.00 42.40 3.24
341 342 8.136165 ACGCTTTTATATTAGTCATCGACTCTT 58.864 33.333 0.00 0.00 42.40 2.85
342 343 8.631695 CGCTTTTATATTAGTCATCGACTCTTC 58.368 37.037 0.00 0.00 42.40 2.87
343 344 8.917655 GCTTTTATATTAGTCATCGACTCTTCC 58.082 37.037 0.00 0.00 42.40 3.46
345 346 9.967346 TTTTATATTAGTCATCGACTCTTCCTG 57.033 33.333 0.00 0.00 42.40 3.86
346 347 8.919777 TTATATTAGTCATCGACTCTTCCTGA 57.080 34.615 0.00 0.00 42.40 3.86
347 348 9.521841 TTATATTAGTCATCGACTCTTCCTGAT 57.478 33.333 0.00 0.00 42.40 2.90
349 350 7.825331 ATTAGTCATCGACTCTTCCTGATAA 57.175 36.000 0.00 0.00 42.40 1.75
350 351 7.825331 TTAGTCATCGACTCTTCCTGATAAT 57.175 36.000 0.00 0.00 42.40 1.28
351 352 8.919777 TTAGTCATCGACTCTTCCTGATAATA 57.080 34.615 0.00 0.00 42.40 0.98
352 353 9.521841 TTAGTCATCGACTCTTCCTGATAATAT 57.478 33.333 0.00 0.00 42.40 1.28
353 354 8.415950 AGTCATCGACTCTTCCTGATAATATT 57.584 34.615 0.00 0.00 38.71 1.28
354 355 8.303156 AGTCATCGACTCTTCCTGATAATATTG 58.697 37.037 0.00 0.00 38.71 1.90
395 396 3.392228 CTGGTACCAGCCTGCTCA 58.608 61.111 28.48 0.00 37.24 4.26
416 417 5.065914 TCATTGAGTTTTGTCTCTTCTGGG 58.934 41.667 0.00 0.00 35.68 4.45
451 452 1.153745 GCGTCTCCTACAGCCACTG 60.154 63.158 0.00 0.00 37.52 3.66
452 453 1.153745 CGTCTCCTACAGCCACTGC 60.154 63.158 0.00 0.00 34.37 4.40
552 568 1.003003 TGCATTCCATCCGTTCTCACA 59.997 47.619 0.00 0.00 0.00 3.58
553 569 2.083774 GCATTCCATCCGTTCTCACAA 58.916 47.619 0.00 0.00 0.00 3.33
555 571 3.488047 GCATTCCATCCGTTCTCACAATG 60.488 47.826 0.00 0.00 0.00 2.82
556 572 3.417069 TTCCATCCGTTCTCACAATGT 57.583 42.857 0.00 0.00 0.00 2.71
557 573 2.972625 TCCATCCGTTCTCACAATGTC 58.027 47.619 0.00 0.00 0.00 3.06
558 574 2.567169 TCCATCCGTTCTCACAATGTCT 59.433 45.455 0.00 0.00 0.00 3.41
559 575 2.674852 CCATCCGTTCTCACAATGTCTG 59.325 50.000 0.00 0.00 0.00 3.51
560 576 3.329386 CATCCGTTCTCACAATGTCTGT 58.671 45.455 0.00 0.00 39.56 3.41
561 577 3.026630 TCCGTTCTCACAATGTCTGTC 57.973 47.619 0.00 0.00 35.47 3.51
562 578 2.069273 CCGTTCTCACAATGTCTGTCC 58.931 52.381 0.00 0.00 35.47 4.02
563 579 2.289072 CCGTTCTCACAATGTCTGTCCT 60.289 50.000 0.00 0.00 35.47 3.85
564 580 2.989840 CGTTCTCACAATGTCTGTCCTC 59.010 50.000 0.00 0.00 35.47 3.71
565 581 3.305676 CGTTCTCACAATGTCTGTCCTCT 60.306 47.826 0.00 0.00 35.47 3.69
566 582 4.241681 GTTCTCACAATGTCTGTCCTCTC 58.758 47.826 0.00 0.00 35.47 3.20
567 583 3.772387 TCTCACAATGTCTGTCCTCTCT 58.228 45.455 0.00 0.00 35.47 3.10
568 584 4.155709 TCTCACAATGTCTGTCCTCTCTT 58.844 43.478 0.00 0.00 35.47 2.85
569 585 4.219507 TCTCACAATGTCTGTCCTCTCTTC 59.780 45.833 0.00 0.00 35.47 2.87
570 586 3.259374 TCACAATGTCTGTCCTCTCTTCC 59.741 47.826 0.00 0.00 35.47 3.46
571 587 3.260380 CACAATGTCTGTCCTCTCTTCCT 59.740 47.826 0.00 0.00 35.47 3.36
572 588 3.260380 ACAATGTCTGTCCTCTCTTCCTG 59.740 47.826 0.00 0.00 29.87 3.86
573 589 1.261480 TGTCTGTCCTCTCTTCCTGC 58.739 55.000 0.00 0.00 0.00 4.85
574 590 0.534873 GTCTGTCCTCTCTTCCTGCC 59.465 60.000 0.00 0.00 0.00 4.85
589 605 2.023015 TCCTGCCCTCTCTCTCCATTAA 60.023 50.000 0.00 0.00 0.00 1.40
592 608 4.219115 CTGCCCTCTCTCTCCATTAAGTA 58.781 47.826 0.00 0.00 0.00 2.24
596 612 5.542251 GCCCTCTCTCTCCATTAAGTAGAAT 59.458 44.000 0.00 0.00 0.00 2.40
597 613 6.518200 GCCCTCTCTCTCCATTAAGTAGAATG 60.518 46.154 0.00 0.00 36.70 2.67
617 633 2.636403 TGGGATGAGATCTCGATTGCAT 59.364 45.455 17.76 5.18 30.32 3.96
618 634 3.001414 GGGATGAGATCTCGATTGCATG 58.999 50.000 17.76 0.00 0.00 4.06
619 635 3.306571 GGGATGAGATCTCGATTGCATGA 60.307 47.826 17.76 0.00 0.00 3.07
620 636 3.927758 GGATGAGATCTCGATTGCATGAG 59.072 47.826 17.76 5.10 0.00 2.90
621 637 2.752121 TGAGATCTCGATTGCATGAGC 58.248 47.619 17.76 0.00 42.57 4.26
622 638 2.067766 GAGATCTCGATTGCATGAGCC 58.932 52.381 7.04 2.35 41.13 4.70
623 639 1.155042 GATCTCGATTGCATGAGCCC 58.845 55.000 0.00 0.00 41.13 5.19
624 640 0.250640 ATCTCGATTGCATGAGCCCC 60.251 55.000 0.00 0.00 41.13 5.80
625 641 1.153107 CTCGATTGCATGAGCCCCA 60.153 57.895 0.00 0.00 41.13 4.96
626 642 0.749091 CTCGATTGCATGAGCCCCAA 60.749 55.000 0.00 0.00 41.13 4.12
627 643 0.749091 TCGATTGCATGAGCCCCAAG 60.749 55.000 0.00 0.00 41.13 3.61
628 644 0.749091 CGATTGCATGAGCCCCAAGA 60.749 55.000 0.00 0.00 41.13 3.02
629 645 1.030457 GATTGCATGAGCCCCAAGAG 58.970 55.000 0.00 0.00 41.13 2.85
630 646 0.627451 ATTGCATGAGCCCCAAGAGA 59.373 50.000 0.00 0.00 41.13 3.10
631 647 0.627451 TTGCATGAGCCCCAAGAGAT 59.373 50.000 0.00 0.00 41.13 2.75
637 653 2.415624 TGAGCCCCAAGAGATCATCAT 58.584 47.619 0.00 0.00 0.00 2.45
641 657 3.462579 AGCCCCAAGAGATCATCATCTTT 59.537 43.478 0.00 0.00 39.71 2.52
652 668 8.200120 AGAGATCATCATCTTTCATTGAACGTA 58.800 33.333 0.00 0.00 39.71 3.57
694 710 0.250727 CTGGGTTGTGGTGATCGGTT 60.251 55.000 0.00 0.00 0.00 4.44
734 750 1.522580 GGCTGGCTTCGTCAGATCC 60.523 63.158 0.00 0.00 37.47 3.36
752 768 3.111853 TCCTCATCCATTGATACGTGC 57.888 47.619 0.00 0.00 32.72 5.34
754 770 3.895041 TCCTCATCCATTGATACGTGCTA 59.105 43.478 0.00 0.00 32.72 3.49
755 771 4.021981 TCCTCATCCATTGATACGTGCTAG 60.022 45.833 0.00 0.00 32.72 3.42
756 772 4.240888 CTCATCCATTGATACGTGCTAGG 58.759 47.826 0.00 0.00 32.72 3.02
778 794 0.924090 GAGTGGCTAGCATCGTTTCG 59.076 55.000 18.24 0.00 0.00 3.46
792 808 1.333524 CGTTTCGGATCTGCATCATGC 60.334 52.381 1.35 1.35 45.29 4.06
836 852 6.904011 CCACTACTAGTAACTTGTATCGTTCG 59.096 42.308 3.76 0.00 0.00 3.95
843 859 6.384224 AGTAACTTGTATCGTTCGTTCATCA 58.616 36.000 0.00 0.00 0.00 3.07
903 921 2.296752 TCGTAGATGTTGTCGTTTCCCA 59.703 45.455 0.00 0.00 0.00 4.37
968 986 2.263741 GGTGAGGTGCCAACTGCTG 61.264 63.158 0.00 0.00 42.00 4.41
1083 1101 2.202797 CTCATGGAGGTCGCACGG 60.203 66.667 0.00 0.00 0.00 4.94
1147 1165 2.192608 GAAGCTGCTGAAACTGGCGG 62.193 60.000 1.35 0.00 37.83 6.13
1289 1307 2.494073 AGATCCTGGACTTGTTCGAGTC 59.506 50.000 0.00 10.73 44.20 3.36
1299 1317 2.776312 TGTTCGAGTCGCATATCCTC 57.224 50.000 7.92 0.00 0.00 3.71
1419 1437 3.425014 ACCAACACCAGTGGCCCA 61.425 61.111 9.78 0.00 34.19 5.36
1498 1516 2.226330 GAGAGCTCTGCGAGAATCCTA 58.774 52.381 23.91 0.00 0.00 2.94
1507 1525 1.676746 CGAGAATCCTACCACTCGGA 58.323 55.000 0.00 0.00 45.22 4.55
1563 1581 1.993391 CCCGGAGCCAGTAAGGGAA 60.993 63.158 0.73 0.00 44.70 3.97
1586 1604 0.108756 AAGCTCTTCTTCGGGTACGC 60.109 55.000 0.00 0.00 40.69 4.42
1644 1662 1.000938 GGCAACTGCAAGGACAAGAAG 60.001 52.381 3.76 0.00 44.36 2.85
1665 1683 2.303311 GGTTATCTCCCTCATAGGCCAC 59.697 54.545 5.01 0.00 32.73 5.01
1856 1874 0.324285 AGCCTTCAGGACAAGCTCAG 59.676 55.000 0.00 0.00 37.39 3.35
1908 1926 2.105306 TGTGCTGGATGATGTATGGAGG 59.895 50.000 0.00 0.00 0.00 4.30
1923 1941 1.278127 TGGAGGGACGAAAAGGACATC 59.722 52.381 0.00 0.00 0.00 3.06
1943 1961 1.200252 CAACGAGAGCGAGAGAAGGAA 59.800 52.381 0.00 0.00 41.64 3.36
2035 2053 4.072088 CGACGAAACTGGGCGCAC 62.072 66.667 10.83 6.04 0.00 5.34
2055 2073 4.557496 GCACAAGAAACCATCTTCCTGAAC 60.557 45.833 0.00 0.00 45.42 3.18
2104 2122 0.793861 GCTCAACGACACCGCAAATA 59.206 50.000 0.00 0.00 39.95 1.40
2105 2123 1.396996 GCTCAACGACACCGCAAATAT 59.603 47.619 0.00 0.00 39.95 1.28
2123 2141 1.758440 ATCAGCGCCGATGGTACCAT 61.758 55.000 27.70 27.70 39.69 3.55
2201 2234 1.457303 CGAGAAGTTGAAGGCACGAAG 59.543 52.381 0.00 0.00 0.00 3.79
2202 2235 1.801178 GAGAAGTTGAAGGCACGAAGG 59.199 52.381 0.00 0.00 0.00 3.46
2206 2239 1.600636 TTGAAGGCACGAAGGGCAG 60.601 57.895 0.00 0.00 35.46 4.85
2247 2280 1.469767 GGCGGCATCTTGGAAAACATC 60.470 52.381 3.07 0.00 0.00 3.06
2273 2306 2.729862 CATCGCCGGCGTAGTAGC 60.730 66.667 44.16 7.41 40.74 3.58
2347 2380 1.236628 GCTCTGCAGCATATTCCCAG 58.763 55.000 9.47 0.00 46.06 4.45
2364 2397 1.476110 CCAGACGGTTGGAGGTTTGAA 60.476 52.381 1.49 0.00 40.87 2.69
2378 2411 2.810852 GGTTTGAACCTGAGAAGCTGAG 59.189 50.000 5.66 0.00 45.75 3.35
2493 2559 2.289694 TGAGTTAGAACAGAGCAAGGGC 60.290 50.000 0.00 0.00 41.61 5.19
2514 2580 3.782046 CGGAGGAGACAAACATAATCGT 58.218 45.455 0.00 0.00 0.00 3.73
2559 2626 1.670087 CGGATGATACGTGATGCCTCC 60.670 57.143 0.00 0.00 0.00 4.30
2728 2795 3.819564 TCCTAAAGGATGACGGTGATG 57.180 47.619 0.00 0.00 39.78 3.07
2729 2796 3.371034 TCCTAAAGGATGACGGTGATGA 58.629 45.455 0.00 0.00 39.78 2.92
2730 2797 3.967326 TCCTAAAGGATGACGGTGATGAT 59.033 43.478 0.00 0.00 39.78 2.45
2731 2798 4.060900 CCTAAAGGATGACGGTGATGATG 58.939 47.826 0.00 0.00 37.39 3.07
2732 2799 3.912496 AAAGGATGACGGTGATGATGA 57.088 42.857 0.00 0.00 0.00 2.92
2733 2800 4.428294 AAAGGATGACGGTGATGATGAT 57.572 40.909 0.00 0.00 0.00 2.45
2734 2801 3.397849 AGGATGACGGTGATGATGATG 57.602 47.619 0.00 0.00 0.00 3.07
2735 2802 2.038164 AGGATGACGGTGATGATGATGG 59.962 50.000 0.00 0.00 0.00 3.51
2736 2803 2.224378 GGATGACGGTGATGATGATGGT 60.224 50.000 0.00 0.00 0.00 3.55
2737 2804 3.006859 GGATGACGGTGATGATGATGGTA 59.993 47.826 0.00 0.00 0.00 3.25
2741 2808 1.995484 CGGTGATGATGATGGTATCGC 59.005 52.381 0.00 0.00 0.00 4.58
2769 2836 7.467811 GCCATTGACAAAGATATACTCCAACAG 60.468 40.741 0.00 0.00 0.00 3.16
2807 2874 1.824230 ACTGGATCTGACAGAGACAGC 59.176 52.381 26.71 9.90 36.17 4.40
2815 2882 3.194329 TCTGACAGAGACAGCCATAACTG 59.806 47.826 0.00 0.00 43.59 3.16
2816 2883 2.234661 TGACAGAGACAGCCATAACTGG 59.765 50.000 0.00 0.00 46.17 4.00
2848 2915 4.666237 GAGTATTGGCAAGCTGAAACATC 58.334 43.478 5.96 0.00 0.00 3.06
2868 2935 0.031414 TGAGGTACCTAGGCCTTCCC 60.031 60.000 16.29 3.98 34.81 3.97
2953 3023 2.231380 GGCCAGGAGGACAAAGGGA 61.231 63.158 0.00 0.00 45.05 4.20
2955 3025 0.322906 GCCAGGAGGACAAAGGGAAG 60.323 60.000 0.00 0.00 36.89 3.46
3009 3079 1.810755 GGAAGGCTGGTTAAACTTCGG 59.189 52.381 0.00 0.00 40.06 4.30
3038 3108 0.543749 GAGTTCCAGGTGATGAGGGG 59.456 60.000 0.00 0.00 0.00 4.79
3058 3128 1.961180 ATCGGAGAAGGAAGGGCACG 61.961 60.000 0.00 0.00 43.58 5.34
3120 3190 0.548031 TGAGCATAAAGGGCCTGGAG 59.452 55.000 6.92 0.00 0.00 3.86
3201 3271 0.332632 TCCTGAAGCTTCAATGGGGG 59.667 55.000 28.16 23.91 36.64 5.40
3243 3313 4.821589 CCTGTCGCCCGAAGCTCC 62.822 72.222 0.00 0.00 40.39 4.70
3323 3393 2.128035 CCTCCATGAACTTCGTATCGC 58.872 52.381 0.00 0.00 0.00 4.58
3585 3655 2.101783 TGGAATGACAATGACATGCCC 58.898 47.619 17.82 13.11 41.46 5.36
3600 3670 3.047735 CCCAAAGTTGCGTTCCCC 58.952 61.111 0.00 0.00 0.00 4.81
3653 3723 2.432628 GCTGTCGTCCTTGTCGGG 60.433 66.667 0.00 0.00 0.00 5.14
3679 3749 2.401766 CGCTGCACAGGTCCCATTC 61.402 63.158 0.00 0.00 0.00 2.67
3714 3787 2.034879 GTGCCCTCACATCACACCG 61.035 63.158 0.00 0.00 42.66 4.94
3769 3842 3.420893 TCAACCTGCAAATTCCACTAGG 58.579 45.455 0.00 0.00 0.00 3.02
3771 3844 1.005924 ACCTGCAAATTCCACTAGGGG 59.994 52.381 3.94 3.94 37.22 4.79
3778 3851 1.198759 ATTCCACTAGGGGTGTGCGT 61.199 55.000 11.80 0.00 43.94 5.24
3779 3852 1.823169 TTCCACTAGGGGTGTGCGTC 61.823 60.000 11.80 0.00 43.94 5.19
3780 3853 2.264794 CACTAGGGGTGTGCGTCC 59.735 66.667 0.00 0.00 40.79 4.79
3781 3854 3.001406 ACTAGGGGTGTGCGTCCC 61.001 66.667 0.00 2.54 43.90 4.46
3800 3873 0.757188 CTCTCCCTCCCTACGTGCAT 60.757 60.000 0.00 0.00 0.00 3.96
3858 3934 5.992217 GTCACTGGGCCTGTAATAAGATTAG 59.008 44.000 16.24 0.01 0.00 1.73
3864 3940 8.288689 TGGGCCTGTAATAAGATTAGAAAAAC 57.711 34.615 4.53 0.00 0.00 2.43
3866 3942 7.201884 GGGCCTGTAATAAGATTAGAAAAACCC 60.202 40.741 0.84 0.00 0.00 4.11
3894 3970 1.404391 GATCTGGATGTTGCCTTGCTG 59.596 52.381 0.00 0.00 0.00 4.41
3907 3983 1.661341 CTTGCTGGCTTACTGGCTAG 58.339 55.000 0.00 0.00 42.47 3.42
3946 4022 2.411547 CGGCGTTGTGATCTCTGTTTTC 60.412 50.000 0.00 0.00 0.00 2.29
3954 4030 6.618287 TGTGATCTCTGTTTTCGTTTCAAT 57.382 33.333 0.00 0.00 0.00 2.57
3955 4031 6.658831 TGTGATCTCTGTTTTCGTTTCAATC 58.341 36.000 0.00 0.00 0.00 2.67
3962 4038 5.172951 TCTGTTTTCGTTTCAATCAATTGCG 59.827 36.000 0.00 0.00 37.68 4.85
3996 4129 6.301861 GGATAAAAACCTTTTCGTAGACGTG 58.698 40.000 0.00 0.00 40.80 4.49
4016 4149 4.519350 CGTGGCACCACTCTATTATCTAGA 59.481 45.833 17.34 0.00 44.16 2.43
4019 4152 6.041069 GTGGCACCACTCTATTATCTAGAACT 59.959 42.308 12.66 0.00 43.12 3.01
4036 4169 9.634021 ATCTAGAACTCTGATAAGTGTCATACA 57.366 33.333 0.00 0.00 0.00 2.29
4038 4171 9.676195 CTAGAACTCTGATAAGTGTCATACATG 57.324 37.037 0.00 0.00 0.00 3.21
4041 4174 6.577103 ACTCTGATAAGTGTCATACATGTGG 58.423 40.000 9.11 0.25 0.00 4.17
4062 4195 1.098050 ACGAAGCAATTCCATCCTGC 58.902 50.000 0.00 0.00 36.29 4.85
4065 4198 1.407979 GAAGCAATTCCATCCTGCTGG 59.592 52.381 2.58 2.58 45.50 4.85
4070 4203 3.853475 CAATTCCATCCTGCTGGTTTTC 58.147 45.455 9.73 0.00 37.57 2.29
4077 4210 0.734889 CCTGCTGGTTTTCTATGGCG 59.265 55.000 0.51 0.00 0.00 5.69
4094 4227 2.100252 TGGCGAGTTTAGTTATCCGAGG 59.900 50.000 0.00 0.00 0.00 4.63
4104 4237 4.170468 AGTTATCCGAGGATGGCAATTT 57.830 40.909 14.50 0.00 36.17 1.82
4124 4257 7.095523 GCAATTTTAGTTGTGAAGCATGACAAT 60.096 33.333 0.00 0.00 34.69 2.71
4125 4258 8.430063 CAATTTTAGTTGTGAAGCATGACAATC 58.570 33.333 0.00 0.00 34.69 2.67
4147 4280 4.405358 TCTTCTGTTTGGATGGCAAGTTTT 59.595 37.500 0.00 0.00 0.00 2.43
4149 4282 5.860941 TCTGTTTGGATGGCAAGTTTTAA 57.139 34.783 0.00 0.00 0.00 1.52
4154 4287 8.964476 TGTTTGGATGGCAAGTTTTAATTTAA 57.036 26.923 0.00 0.00 0.00 1.52
4204 4340 2.780595 CCAGGGTGGTGCTATTTCG 58.219 57.895 0.00 0.00 31.35 3.46
4214 4350 1.468520 GTGCTATTTCGTGCCACATGT 59.531 47.619 0.00 0.00 0.00 3.21
4218 4354 0.039256 ATTTCGTGCCACATGTGTGC 60.039 50.000 23.79 23.98 44.34 4.57
4226 4362 1.133025 GCCACATGTGTGCCAGTTATC 59.867 52.381 23.79 0.00 44.34 1.75
4227 4363 2.435422 CCACATGTGTGCCAGTTATCA 58.565 47.619 23.79 0.00 44.34 2.15
4232 4368 3.574284 TGTGTGCCAGTTATCATTTGC 57.426 42.857 0.00 0.00 0.00 3.68
4234 4370 1.472082 TGTGCCAGTTATCATTTGCGG 59.528 47.619 0.00 0.00 0.00 5.69
4264 4400 5.435686 TTAGGACATCTACAATGCCAACT 57.564 39.130 0.00 0.00 0.00 3.16
4274 4410 1.273327 CAATGCCAACTCTCAAACCCC 59.727 52.381 0.00 0.00 0.00 4.95
4292 4428 2.103538 CCACATACGTCCGGACCG 59.896 66.667 28.52 23.77 0.00 4.79
4307 4443 4.405762 CCGCGCGGTCTAAACATA 57.594 55.556 39.71 0.00 0.00 2.29
4315 4451 3.000925 CGCGGTCTAAACATATTGTGTCC 59.999 47.826 0.00 0.00 41.14 4.02
4322 4458 7.012421 GGTCTAAACATATTGTGTCCTCCAATC 59.988 40.741 0.00 0.00 41.14 2.67
4339 4476 3.059884 CAATCTGGGTTGTATCGATCCG 58.940 50.000 0.00 0.00 0.00 4.18
4362 4499 2.946752 GCGGTCCGGACGTGTTTTC 61.947 63.158 27.68 11.35 0.00 2.29
4364 4501 1.070275 GGTCCGGACGTGTTTTCCT 59.930 57.895 27.68 0.00 0.00 3.36
4366 4503 0.947660 GTCCGGACGTGTTTTCCTCC 60.948 60.000 20.85 0.00 0.00 4.30
4377 4514 1.065851 GTTTTCCTCCGCAAACCGAAA 59.934 47.619 0.00 0.00 40.02 3.46
4388 4525 3.377439 GCAAACCGAAAACAAACTAGGG 58.623 45.455 0.00 0.00 0.00 3.53
4395 4532 3.822167 CGAAAACAAACTAGGGGGCTTTA 59.178 43.478 0.00 0.00 0.00 1.85
4396 4533 4.461431 CGAAAACAAACTAGGGGGCTTTAT 59.539 41.667 0.00 0.00 0.00 1.40
4400 4537 2.243736 CAAACTAGGGGGCTTTATGGGA 59.756 50.000 0.00 0.00 0.00 4.37
4402 4539 1.010917 ACTAGGGGGCTTTATGGGAGT 59.989 52.381 0.00 0.00 0.00 3.85
4403 4540 1.700186 CTAGGGGGCTTTATGGGAGTC 59.300 57.143 0.00 0.00 0.00 3.36
4409 4546 1.664873 GCTTTATGGGAGTCCGAACC 58.335 55.000 2.26 0.00 35.24 3.62
4436 4573 4.410400 CCCGTTCCTGACTGCCCC 62.410 72.222 0.00 0.00 0.00 5.80
4438 4575 3.691342 CGTTCCTGACTGCCCCGA 61.691 66.667 0.00 0.00 0.00 5.14
4457 4594 1.151908 CCCACGGAAAAACCCCTCA 59.848 57.895 0.00 0.00 34.64 3.86
4461 4598 1.137697 ACGGAAAAACCCCTCACTCT 58.862 50.000 0.00 0.00 34.64 3.24
4462 4599 1.071857 ACGGAAAAACCCCTCACTCTC 59.928 52.381 0.00 0.00 34.64 3.20
4464 4601 1.157585 GAAAAACCCCTCACTCTCGC 58.842 55.000 0.00 0.00 0.00 5.03
4481 4888 4.379243 CCGCTTGGCTCCTCACGT 62.379 66.667 0.00 0.00 0.00 4.49
4484 4891 2.125912 CTTGGCTCCTCACGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
4488 4895 4.803426 GCTCCTCACGTCCGCCTG 62.803 72.222 0.00 0.00 0.00 4.85
4496 4903 1.205179 TCACGTCCGCCTGCTATTTAA 59.795 47.619 0.00 0.00 0.00 1.52
4502 4909 3.687698 GTCCGCCTGCTATTTAAACAAGA 59.312 43.478 4.04 0.00 0.00 3.02
4508 4915 5.358160 GCCTGCTATTTAAACAAGACCAGAT 59.642 40.000 4.04 0.00 0.00 2.90
4509 4916 6.678900 GCCTGCTATTTAAACAAGACCAGATG 60.679 42.308 4.04 0.00 0.00 2.90
4511 4918 7.094205 CCTGCTATTTAAACAAGACCAGATGTT 60.094 37.037 4.04 0.00 41.31 2.71
4534 4941 0.535102 CAAGAACCGCTCCACACCTT 60.535 55.000 0.00 0.00 0.00 3.50
4585 4992 0.179100 CCACAATCTCGATGGCGTCT 60.179 55.000 5.00 0.00 38.98 4.18
4588 4995 1.066858 ACAATCTCGATGGCGTCTGTT 60.067 47.619 5.00 0.00 38.98 3.16
4600 5007 2.416162 GGCGTCTGTTGAGTAGGAAGAG 60.416 54.545 0.00 0.00 0.00 2.85
4602 5009 2.416162 CGTCTGTTGAGTAGGAAGAGGC 60.416 54.545 0.00 0.00 0.00 4.70
4603 5010 2.563179 GTCTGTTGAGTAGGAAGAGGCA 59.437 50.000 0.00 0.00 0.00 4.75
4604 5011 3.006967 GTCTGTTGAGTAGGAAGAGGCAA 59.993 47.826 0.00 0.00 0.00 4.52
4609 5016 2.690497 TGAGTAGGAAGAGGCAATCTCG 59.310 50.000 0.00 0.00 46.82 4.04
4614 5031 1.224965 GAAGAGGCAATCTCGATGGC 58.775 55.000 3.02 3.02 46.82 4.40
4622 5039 0.982852 AATCTCGATGGCTGGGTGGA 60.983 55.000 0.00 0.00 0.00 4.02
4626 5043 1.227764 CGATGGCTGGGTGGATCTG 60.228 63.158 0.00 0.00 0.00 2.90
4635 5052 1.078143 GGTGGATCTGCGAGCCTTT 60.078 57.895 12.72 0.00 39.11 3.11
4674 5091 1.302832 CGCTGCTCCACCTTCCTTT 60.303 57.895 0.00 0.00 0.00 3.11
4680 5097 1.068121 CTCCACCTTCCTTTCACCCT 58.932 55.000 0.00 0.00 0.00 4.34
4686 5103 0.107654 CTTCCTTTCACCCTAGGCCG 60.108 60.000 2.05 0.00 0.00 6.13
4687 5104 2.124695 CCTTTCACCCTAGGCCGC 60.125 66.667 2.05 0.00 0.00 6.53
4688 5105 2.124695 CTTTCACCCTAGGCCGCC 60.125 66.667 2.05 0.00 0.00 6.13
4705 5122 1.224592 CCAGTACCATGGGTGAGGC 59.775 63.158 18.09 0.00 36.19 4.70
4728 5145 4.394712 CCGCTCAAAGGTCGCCCT 62.395 66.667 0.00 0.00 45.63 5.19
4736 5153 4.335647 AGGTCGCCCTTGGTGCAG 62.336 66.667 0.00 0.00 38.13 4.41
4752 5169 4.314440 AGCAACTCGCCGCTCCAA 62.314 61.111 0.00 0.00 44.04 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.070179 GGTCAAAGTCCACTTAAACCTAATTAA 57.930 33.333 12.71 0.00 37.53 1.40
33 34 7.388500 CGGTCAAAGTCCACTTAAACCTAATTA 59.612 37.037 15.83 0.00 37.97 1.40
34 35 6.206048 CGGTCAAAGTCCACTTAAACCTAATT 59.794 38.462 15.83 0.00 37.97 1.40
35 36 5.704053 CGGTCAAAGTCCACTTAAACCTAAT 59.296 40.000 15.83 0.00 37.97 1.73
36 37 5.058490 CGGTCAAAGTCCACTTAAACCTAA 58.942 41.667 15.83 0.00 37.97 2.69
37 38 4.503643 CCGGTCAAAGTCCACTTAAACCTA 60.504 45.833 15.83 0.00 37.97 3.08
38 39 3.473625 CGGTCAAAGTCCACTTAAACCT 58.526 45.455 15.83 0.00 37.97 3.50
39 40 2.551032 CCGGTCAAAGTCCACTTAAACC 59.449 50.000 10.94 10.94 37.33 3.27
40 41 2.031420 GCCGGTCAAAGTCCACTTAAAC 60.031 50.000 1.90 0.00 34.61 2.01
41 42 2.158726 AGCCGGTCAAAGTCCACTTAAA 60.159 45.455 1.90 0.00 34.61 1.52
42 43 1.418637 AGCCGGTCAAAGTCCACTTAA 59.581 47.619 1.90 0.00 34.61 1.85
43 44 1.053424 AGCCGGTCAAAGTCCACTTA 58.947 50.000 1.90 0.00 34.61 2.24
44 45 1.053424 TAGCCGGTCAAAGTCCACTT 58.947 50.000 1.90 0.00 37.91 3.16
45 46 0.320697 GTAGCCGGTCAAAGTCCACT 59.679 55.000 1.90 0.00 0.00 4.00
46 47 0.320697 AGTAGCCGGTCAAAGTCCAC 59.679 55.000 1.90 0.00 0.00 4.02
47 48 1.053424 AAGTAGCCGGTCAAAGTCCA 58.947 50.000 1.90 0.00 0.00 4.02
48 49 3.538634 ATAAGTAGCCGGTCAAAGTCC 57.461 47.619 1.90 0.00 0.00 3.85
49 50 8.652810 TTAAATATAAGTAGCCGGTCAAAGTC 57.347 34.615 1.90 0.00 0.00 3.01
50 51 9.623000 AATTAAATATAAGTAGCCGGTCAAAGT 57.377 29.630 1.90 0.00 0.00 2.66
99 100 3.856521 CGCAAATATGTCGGCATGAAAAA 59.143 39.130 13.98 0.00 36.58 1.94
100 101 3.119673 ACGCAAATATGTCGGCATGAAAA 60.120 39.130 13.98 0.00 36.58 2.29
101 102 2.421775 ACGCAAATATGTCGGCATGAAA 59.578 40.909 13.98 0.00 36.58 2.69
102 103 2.013400 ACGCAAATATGTCGGCATGAA 58.987 42.857 13.98 0.00 36.58 2.57
103 104 1.597195 GACGCAAATATGTCGGCATGA 59.403 47.619 13.98 0.00 35.21 3.07
104 105 1.330213 TGACGCAAATATGTCGGCATG 59.670 47.619 13.98 0.00 38.54 4.06
105 106 1.599071 CTGACGCAAATATGTCGGCAT 59.401 47.619 8.02 8.02 41.14 4.40
106 107 1.006086 CTGACGCAAATATGTCGGCA 58.994 50.000 0.00 0.00 40.24 5.69
107 108 3.806257 CTGACGCAAATATGTCGGC 57.194 52.632 0.00 0.00 37.94 5.54
108 109 0.304705 GGCTGACGCAAATATGTCGG 59.695 55.000 0.00 0.00 42.97 4.79
109 110 1.290203 AGGCTGACGCAAATATGTCG 58.710 50.000 0.00 0.00 37.94 4.35
110 111 2.032178 GGAAGGCTGACGCAAATATGTC 59.968 50.000 0.00 0.00 38.10 3.06
111 112 2.017049 GGAAGGCTGACGCAAATATGT 58.983 47.619 0.00 0.00 38.10 2.29
112 113 2.016318 TGGAAGGCTGACGCAAATATG 58.984 47.619 0.00 0.00 38.10 1.78
113 114 2.418368 TGGAAGGCTGACGCAAATAT 57.582 45.000 0.00 0.00 38.10 1.28
114 115 2.418368 ATGGAAGGCTGACGCAAATA 57.582 45.000 0.00 0.00 38.10 1.40
115 116 1.203052 CAATGGAAGGCTGACGCAAAT 59.797 47.619 0.00 0.00 38.10 2.32
116 117 0.597568 CAATGGAAGGCTGACGCAAA 59.402 50.000 0.00 0.00 38.10 3.68
117 118 1.243342 CCAATGGAAGGCTGACGCAA 61.243 55.000 0.00 0.00 38.10 4.85
118 119 1.675310 CCAATGGAAGGCTGACGCA 60.675 57.895 0.00 0.00 38.10 5.24
119 120 0.749454 ATCCAATGGAAGGCTGACGC 60.749 55.000 5.89 0.00 34.34 5.19
120 121 1.019673 CATCCAATGGAAGGCTGACG 58.980 55.000 5.89 0.00 34.34 4.35
131 132 2.621998 GGATCAGCTTGACCATCCAATG 59.378 50.000 0.00 0.00 0.00 2.82
132 133 2.747467 CGGATCAGCTTGACCATCCAAT 60.747 50.000 0.00 0.00 0.00 3.16
133 134 1.407299 CGGATCAGCTTGACCATCCAA 60.407 52.381 0.00 0.00 0.00 3.53
134 135 0.178767 CGGATCAGCTTGACCATCCA 59.821 55.000 0.00 0.00 0.00 3.41
135 136 0.179000 ACGGATCAGCTTGACCATCC 59.821 55.000 0.00 0.00 0.00 3.51
136 137 2.029838 AACGGATCAGCTTGACCATC 57.970 50.000 0.00 0.00 0.00 3.51
137 138 2.086869 CAAACGGATCAGCTTGACCAT 58.913 47.619 3.22 0.00 0.00 3.55
138 139 1.071542 TCAAACGGATCAGCTTGACCA 59.928 47.619 7.48 0.00 0.00 4.02
139 140 1.808411 TCAAACGGATCAGCTTGACC 58.192 50.000 7.48 0.00 0.00 4.02
140 141 3.896648 TTTCAAACGGATCAGCTTGAC 57.103 42.857 10.63 0.00 0.00 3.18
141 142 4.797471 CATTTTCAAACGGATCAGCTTGA 58.203 39.130 7.48 7.48 0.00 3.02
142 143 3.365820 GCATTTTCAAACGGATCAGCTTG 59.634 43.478 2.95 2.95 0.00 4.01
143 144 3.578688 GCATTTTCAAACGGATCAGCTT 58.421 40.909 0.00 0.00 0.00 3.74
144 145 2.414559 CGCATTTTCAAACGGATCAGCT 60.415 45.455 0.00 0.00 0.00 4.24
145 146 1.913403 CGCATTTTCAAACGGATCAGC 59.087 47.619 0.00 0.00 0.00 4.26
151 152 0.040781 ACGTCCGCATTTTCAAACGG 60.041 50.000 0.00 0.00 46.97 4.44
152 153 2.227556 GTACGTCCGCATTTTCAAACG 58.772 47.619 0.00 0.00 36.29 3.60
153 154 2.968655 GTGTACGTCCGCATTTTCAAAC 59.031 45.455 0.00 0.00 0.00 2.93
154 155 2.348685 CGTGTACGTCCGCATTTTCAAA 60.349 45.455 0.00 0.00 34.11 2.69
155 156 1.192757 CGTGTACGTCCGCATTTTCAA 59.807 47.619 0.00 0.00 34.11 2.69
156 157 0.785378 CGTGTACGTCCGCATTTTCA 59.215 50.000 0.00 0.00 34.11 2.69
157 158 3.555817 CGTGTACGTCCGCATTTTC 57.444 52.632 0.00 0.00 34.11 2.29
168 169 2.660612 GGCCAAACGGACGTGTACG 61.661 63.158 2.48 2.48 43.89 3.67
169 170 3.247046 GGCCAAACGGACGTGTAC 58.753 61.111 0.00 0.00 0.00 2.90
175 176 4.629523 TGGGTCGGCCAAACGGAC 62.630 66.667 9.07 0.56 45.38 4.79
176 177 2.700407 ATTTGGGTCGGCCAAACGGA 62.700 55.000 9.07 0.00 39.49 4.69
177 178 0.961358 TATTTGGGTCGGCCAAACGG 60.961 55.000 9.07 0.00 39.49 4.44
178 179 0.882474 TTATTTGGGTCGGCCAAACG 59.118 50.000 9.07 0.00 39.49 3.60
179 180 3.603158 ATTTATTTGGGTCGGCCAAAC 57.397 42.857 9.07 0.00 39.49 2.93
180 181 5.740290 TTTATTTATTTGGGTCGGCCAAA 57.260 34.783 9.07 0.00 40.66 3.28
181 182 5.740290 TTTTATTTATTTGGGTCGGCCAA 57.260 34.783 9.07 0.00 36.17 4.52
182 183 5.725362 CTTTTTATTTATTTGGGTCGGCCA 58.275 37.500 9.07 0.00 36.17 5.36
183 184 4.569162 GCTTTTTATTTATTTGGGTCGGCC 59.431 41.667 0.00 0.00 0.00 6.13
184 185 4.266739 CGCTTTTTATTTATTTGGGTCGGC 59.733 41.667 0.00 0.00 0.00 5.54
185 186 4.801516 CCGCTTTTTATTTATTTGGGTCGG 59.198 41.667 0.00 0.00 0.00 4.79
186 187 5.513849 GTCCGCTTTTTATTTATTTGGGTCG 59.486 40.000 0.00 0.00 0.00 4.79
187 188 6.391537 TGTCCGCTTTTTATTTATTTGGGTC 58.608 36.000 0.00 0.00 0.00 4.46
188 189 6.347859 TGTCCGCTTTTTATTTATTTGGGT 57.652 33.333 0.00 0.00 0.00 4.51
189 190 7.659652 TTTGTCCGCTTTTTATTTATTTGGG 57.340 32.000 0.00 0.00 0.00 4.12
190 191 7.738176 CGTTTTGTCCGCTTTTTATTTATTTGG 59.262 33.333 0.00 0.00 0.00 3.28
191 192 8.620934 CGTTTTGTCCGCTTTTTATTTATTTG 57.379 30.769 0.00 0.00 0.00 2.32
206 207 1.209127 GGGATGTGCGTTTTGTCCG 59.791 57.895 0.00 0.00 0.00 4.79
207 208 0.958822 AAGGGATGTGCGTTTTGTCC 59.041 50.000 0.00 0.00 0.00 4.02
208 209 2.793278 AAAGGGATGTGCGTTTTGTC 57.207 45.000 0.00 0.00 0.00 3.18
209 210 3.634910 ACTAAAAGGGATGTGCGTTTTGT 59.365 39.130 12.94 7.82 0.00 2.83
210 211 4.226761 GACTAAAAGGGATGTGCGTTTTG 58.773 43.478 12.94 7.37 0.00 2.44
211 212 3.058501 CGACTAAAAGGGATGTGCGTTTT 60.059 43.478 9.29 9.29 0.00 2.43
212 213 2.482721 CGACTAAAAGGGATGTGCGTTT 59.517 45.455 0.00 0.00 0.00 3.60
213 214 2.073816 CGACTAAAAGGGATGTGCGTT 58.926 47.619 0.00 0.00 0.00 4.84
214 215 1.722011 CGACTAAAAGGGATGTGCGT 58.278 50.000 0.00 0.00 0.00 5.24
215 216 0.373716 GCGACTAAAAGGGATGTGCG 59.626 55.000 0.00 0.00 0.00 5.34
216 217 0.733150 GGCGACTAAAAGGGATGTGC 59.267 55.000 0.00 0.00 0.00 4.57
217 218 1.379527 GGGCGACTAAAAGGGATGTG 58.620 55.000 0.00 0.00 0.00 3.21
218 219 0.107848 CGGGCGACTAAAAGGGATGT 60.108 55.000 0.00 0.00 0.00 3.06
219 220 0.107848 ACGGGCGACTAAAAGGGATG 60.108 55.000 0.00 0.00 0.00 3.51
220 221 0.616891 AACGGGCGACTAAAAGGGAT 59.383 50.000 0.00 0.00 0.00 3.85
221 222 0.320946 CAACGGGCGACTAAAAGGGA 60.321 55.000 0.00 0.00 0.00 4.20
222 223 1.303091 CCAACGGGCGACTAAAAGGG 61.303 60.000 0.00 0.00 0.00 3.95
223 224 0.320946 TCCAACGGGCGACTAAAAGG 60.321 55.000 0.00 0.00 0.00 3.11
224 225 1.076332 CTCCAACGGGCGACTAAAAG 58.924 55.000 0.00 0.00 0.00 2.27
225 226 0.393820 ACTCCAACGGGCGACTAAAA 59.606 50.000 0.00 0.00 0.00 1.52
226 227 0.393820 AACTCCAACGGGCGACTAAA 59.606 50.000 0.00 0.00 0.00 1.85
227 228 0.320073 CAACTCCAACGGGCGACTAA 60.320 55.000 0.00 0.00 0.00 2.24
228 229 1.290955 CAACTCCAACGGGCGACTA 59.709 57.895 0.00 0.00 0.00 2.59
229 230 2.030562 CAACTCCAACGGGCGACT 59.969 61.111 0.00 0.00 0.00 4.18
230 231 3.723348 GCAACTCCAACGGGCGAC 61.723 66.667 0.00 0.00 0.00 5.19
231 232 3.876589 GAGCAACTCCAACGGGCGA 62.877 63.158 0.00 0.00 0.00 5.54
232 233 3.423154 GAGCAACTCCAACGGGCG 61.423 66.667 0.00 0.00 0.00 6.13
233 234 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
234 235 1.439679 GTAAGAGCAACTCCAACGGG 58.560 55.000 0.00 0.00 0.00 5.28
235 236 1.270625 TGGTAAGAGCAACTCCAACGG 60.271 52.381 0.00 0.00 0.00 4.44
236 237 2.163818 TGGTAAGAGCAACTCCAACG 57.836 50.000 0.00 0.00 0.00 4.10
237 238 5.453567 AATTTGGTAAGAGCAACTCCAAC 57.546 39.130 0.00 0.00 37.80 3.77
238 239 5.180492 CGTAATTTGGTAAGAGCAACTCCAA 59.820 40.000 0.00 0.00 35.07 3.53
239 240 4.693566 CGTAATTTGGTAAGAGCAACTCCA 59.306 41.667 0.00 0.00 35.07 3.86
240 241 4.694037 ACGTAATTTGGTAAGAGCAACTCC 59.306 41.667 0.00 0.00 35.07 3.85
241 242 5.857822 ACGTAATTTGGTAAGAGCAACTC 57.142 39.130 0.00 0.00 35.07 3.01
242 243 6.461640 ACTACGTAATTTGGTAAGAGCAACT 58.538 36.000 0.00 0.00 35.07 3.16
243 244 6.716898 ACTACGTAATTTGGTAAGAGCAAC 57.283 37.500 0.00 0.00 35.07 4.17
244 245 8.875803 CATTACTACGTAATTTGGTAAGAGCAA 58.124 33.333 9.38 0.00 36.70 3.91
245 246 8.036575 ACATTACTACGTAATTTGGTAAGAGCA 58.963 33.333 9.38 0.00 36.70 4.26
246 247 8.416485 ACATTACTACGTAATTTGGTAAGAGC 57.584 34.615 9.38 0.00 36.70 4.09
248 249 9.801873 GGTACATTACTACGTAATTTGGTAAGA 57.198 33.333 9.38 0.00 36.70 2.10
249 250 9.034544 GGGTACATTACTACGTAATTTGGTAAG 57.965 37.037 9.38 5.61 36.70 2.34
250 251 7.984617 GGGGTACATTACTACGTAATTTGGTAA 59.015 37.037 6.78 6.78 36.70 2.85
251 252 7.344352 AGGGGTACATTACTACGTAATTTGGTA 59.656 37.037 0.00 0.00 36.70 3.25
252 253 6.156775 AGGGGTACATTACTACGTAATTTGGT 59.843 38.462 0.00 0.00 36.70 3.67
253 254 6.585416 AGGGGTACATTACTACGTAATTTGG 58.415 40.000 0.00 0.00 36.70 3.28
254 255 8.392612 CAAAGGGGTACATTACTACGTAATTTG 58.607 37.037 0.00 0.00 36.70 2.32
255 256 8.102676 ACAAAGGGGTACATTACTACGTAATTT 58.897 33.333 0.00 0.00 36.70 1.82
256 257 7.623630 ACAAAGGGGTACATTACTACGTAATT 58.376 34.615 0.00 0.00 36.70 1.40
257 258 7.186570 ACAAAGGGGTACATTACTACGTAAT 57.813 36.000 0.00 0.00 39.01 1.89
258 259 6.603940 ACAAAGGGGTACATTACTACGTAA 57.396 37.500 0.00 0.00 32.36 3.18
259 260 7.710676 TTACAAAGGGGTACATTACTACGTA 57.289 36.000 0.00 0.00 0.00 3.57
260 261 6.603940 TTACAAAGGGGTACATTACTACGT 57.396 37.500 0.00 0.00 0.00 3.57
261 262 8.496707 AATTTACAAAGGGGTACATTACTACG 57.503 34.615 0.00 0.00 0.00 3.51
292 293 8.964150 GCGTTTAGTAATGATCAAAACACTTTT 58.036 29.630 16.30 1.11 31.85 2.27
293 294 8.349983 AGCGTTTAGTAATGATCAAAACACTTT 58.650 29.630 16.30 1.74 31.85 2.66
294 295 7.871853 AGCGTTTAGTAATGATCAAAACACTT 58.128 30.769 16.30 2.36 31.85 3.16
295 296 7.435068 AGCGTTTAGTAATGATCAAAACACT 57.565 32.000 16.30 10.95 31.85 3.55
296 297 8.502161 AAAGCGTTTAGTAATGATCAAAACAC 57.498 30.769 16.30 9.28 31.85 3.32
310 311 9.740239 TCGATGACTAATATAAAAGCGTTTAGT 57.260 29.630 10.55 4.35 36.19 2.24
311 312 9.990888 GTCGATGACTAATATAAAAGCGTTTAG 57.009 33.333 10.55 1.25 32.76 1.85
312 313 9.740239 AGTCGATGACTAATATAAAAGCGTTTA 57.260 29.630 7.30 7.30 41.51 2.01
313 314 8.644318 AGTCGATGACTAATATAAAAGCGTTT 57.356 30.769 2.53 2.53 41.51 3.60
314 315 8.136165 AGAGTCGATGACTAATATAAAAGCGTT 58.864 33.333 0.00 0.00 43.53 4.84
315 316 7.649973 AGAGTCGATGACTAATATAAAAGCGT 58.350 34.615 0.00 0.00 43.53 5.07
316 317 8.508800 AAGAGTCGATGACTAATATAAAAGCG 57.491 34.615 0.00 0.00 43.53 4.68
317 318 8.917655 GGAAGAGTCGATGACTAATATAAAAGC 58.082 37.037 0.00 0.00 43.53 3.51
319 320 9.967346 CAGGAAGAGTCGATGACTAATATAAAA 57.033 33.333 0.00 0.00 43.53 1.52
320 321 9.350951 TCAGGAAGAGTCGATGACTAATATAAA 57.649 33.333 0.00 0.00 43.53 1.40
321 322 8.919777 TCAGGAAGAGTCGATGACTAATATAA 57.080 34.615 0.00 0.00 43.53 0.98
323 324 9.521841 TTATCAGGAAGAGTCGATGACTAATAT 57.478 33.333 0.00 0.00 43.53 1.28
324 325 8.919777 TTATCAGGAAGAGTCGATGACTAATA 57.080 34.615 0.00 0.00 43.53 0.98
325 326 7.825331 TTATCAGGAAGAGTCGATGACTAAT 57.175 36.000 0.00 0.00 43.53 1.73
326 327 7.825331 ATTATCAGGAAGAGTCGATGACTAA 57.175 36.000 0.00 0.00 43.53 2.24
327 328 9.521841 AATATTATCAGGAAGAGTCGATGACTA 57.478 33.333 0.00 0.00 43.53 2.59
328 329 8.303156 CAATATTATCAGGAAGAGTCGATGACT 58.697 37.037 0.00 0.00 46.42 3.41
329 330 8.300286 TCAATATTATCAGGAAGAGTCGATGAC 58.700 37.037 0.00 0.00 0.00 3.06
330 331 8.300286 GTCAATATTATCAGGAAGAGTCGATGA 58.700 37.037 0.00 0.00 0.00 2.92
331 332 8.303156 AGTCAATATTATCAGGAAGAGTCGATG 58.697 37.037 0.00 0.00 0.00 3.84
332 333 8.415950 AGTCAATATTATCAGGAAGAGTCGAT 57.584 34.615 0.00 0.00 0.00 3.59
333 334 7.825331 AGTCAATATTATCAGGAAGAGTCGA 57.175 36.000 0.00 0.00 0.00 4.20
334 335 7.383572 CCAAGTCAATATTATCAGGAAGAGTCG 59.616 40.741 0.00 0.00 0.00 4.18
335 336 7.172361 GCCAAGTCAATATTATCAGGAAGAGTC 59.828 40.741 0.00 0.00 0.00 3.36
336 337 6.995091 GCCAAGTCAATATTATCAGGAAGAGT 59.005 38.462 0.00 0.00 0.00 3.24
337 338 7.222872 AGCCAAGTCAATATTATCAGGAAGAG 58.777 38.462 0.00 0.00 0.00 2.85
338 339 7.141758 AGCCAAGTCAATATTATCAGGAAGA 57.858 36.000 0.00 0.00 0.00 2.87
339 340 8.153550 ACTAGCCAAGTCAATATTATCAGGAAG 58.846 37.037 0.00 0.00 30.33 3.46
340 341 8.034313 ACTAGCCAAGTCAATATTATCAGGAA 57.966 34.615 0.00 0.00 30.33 3.36
341 342 7.618019 ACTAGCCAAGTCAATATTATCAGGA 57.382 36.000 0.00 0.00 30.33 3.86
379 380 0.035152 CAATGAGCAGGCTGGTACCA 60.035 55.000 20.63 15.39 0.00 3.25
383 384 0.403271 AACTCAATGAGCAGGCTGGT 59.597 50.000 20.74 20.74 32.04 4.00
395 396 3.823304 GCCCAGAAGAGACAAAACTCAAT 59.177 43.478 0.00 0.00 39.14 2.57
552 568 2.235898 GCAGGAAGAGAGGACAGACATT 59.764 50.000 0.00 0.00 0.00 2.71
553 569 1.830477 GCAGGAAGAGAGGACAGACAT 59.170 52.381 0.00 0.00 0.00 3.06
555 571 0.534873 GGCAGGAAGAGAGGACAGAC 59.465 60.000 0.00 0.00 0.00 3.51
556 572 0.616111 GGGCAGGAAGAGAGGACAGA 60.616 60.000 0.00 0.00 0.00 3.41
557 573 0.617249 AGGGCAGGAAGAGAGGACAG 60.617 60.000 0.00 0.00 0.00 3.51
558 574 0.616111 GAGGGCAGGAAGAGAGGACA 60.616 60.000 0.00 0.00 0.00 4.02
559 575 0.325203 AGAGGGCAGGAAGAGAGGAC 60.325 60.000 0.00 0.00 0.00 3.85
560 576 0.032615 GAGAGGGCAGGAAGAGAGGA 60.033 60.000 0.00 0.00 0.00 3.71
561 577 0.032217 AGAGAGGGCAGGAAGAGAGG 60.032 60.000 0.00 0.00 0.00 3.69
562 578 1.063717 AGAGAGAGGGCAGGAAGAGAG 60.064 57.143 0.00 0.00 0.00 3.20
563 579 1.006813 AGAGAGAGGGCAGGAAGAGA 58.993 55.000 0.00 0.00 0.00 3.10
564 580 1.402787 GAGAGAGAGGGCAGGAAGAG 58.597 60.000 0.00 0.00 0.00 2.85
565 581 0.032615 GGAGAGAGAGGGCAGGAAGA 60.033 60.000 0.00 0.00 0.00 2.87
566 582 0.325110 TGGAGAGAGAGGGCAGGAAG 60.325 60.000 0.00 0.00 0.00 3.46
567 583 0.341258 ATGGAGAGAGAGGGCAGGAA 59.659 55.000 0.00 0.00 0.00 3.36
568 584 0.341258 AATGGAGAGAGAGGGCAGGA 59.659 55.000 0.00 0.00 0.00 3.86
569 585 2.094100 TAATGGAGAGAGAGGGCAGG 57.906 55.000 0.00 0.00 0.00 4.85
570 586 3.037549 ACTTAATGGAGAGAGAGGGCAG 58.962 50.000 0.00 0.00 0.00 4.85
571 587 3.121929 ACTTAATGGAGAGAGAGGGCA 57.878 47.619 0.00 0.00 0.00 5.36
572 588 4.475345 TCTACTTAATGGAGAGAGAGGGC 58.525 47.826 0.00 0.00 0.00 5.19
573 589 6.991938 CATTCTACTTAATGGAGAGAGAGGG 58.008 44.000 0.00 0.00 33.95 4.30
589 605 4.991776 TCGAGATCTCATCCCATTCTACT 58.008 43.478 22.31 0.00 0.00 2.57
592 608 4.563168 GCAATCGAGATCTCATCCCATTCT 60.563 45.833 22.31 0.00 0.00 2.40
596 612 2.041701 TGCAATCGAGATCTCATCCCA 58.958 47.619 22.31 9.30 0.00 4.37
597 613 2.827800 TGCAATCGAGATCTCATCCC 57.172 50.000 22.31 6.94 0.00 3.85
617 633 1.883678 TGATGATCTCTTGGGGCTCA 58.116 50.000 0.00 0.00 0.00 4.26
618 634 2.638855 AGATGATGATCTCTTGGGGCTC 59.361 50.000 0.00 0.00 33.20 4.70
619 635 2.703947 AGATGATGATCTCTTGGGGCT 58.296 47.619 0.00 0.00 33.20 5.19
620 636 3.505480 AAGATGATGATCTCTTGGGGC 57.495 47.619 0.00 0.00 38.03 5.80
621 637 5.045012 TGAAAGATGATGATCTCTTGGGG 57.955 43.478 0.00 0.00 38.03 4.96
622 638 6.771267 TCAATGAAAGATGATGATCTCTTGGG 59.229 38.462 0.00 0.00 38.03 4.12
623 639 7.803279 TCAATGAAAGATGATGATCTCTTGG 57.197 36.000 0.00 0.00 38.03 3.61
624 640 7.851472 CGTTCAATGAAAGATGATGATCTCTTG 59.149 37.037 2.77 0.00 38.03 3.02
625 641 7.551974 ACGTTCAATGAAAGATGATGATCTCTT 59.448 33.333 15.34 0.00 38.03 2.85
626 642 7.046652 ACGTTCAATGAAAGATGATGATCTCT 58.953 34.615 15.34 0.00 38.03 3.10
627 643 7.244166 ACGTTCAATGAAAGATGATGATCTC 57.756 36.000 15.34 0.00 38.03 2.75
628 644 8.899427 ATACGTTCAATGAAAGATGATGATCT 57.101 30.769 15.34 0.00 41.00 2.75
630 646 8.715998 GCTATACGTTCAATGAAAGATGATGAT 58.284 33.333 15.34 2.50 0.00 2.45
631 647 7.710475 TGCTATACGTTCAATGAAAGATGATGA 59.290 33.333 15.34 0.00 0.00 2.92
637 653 5.584251 TGCATGCTATACGTTCAATGAAAGA 59.416 36.000 20.33 0.52 0.00 2.52
641 657 4.441792 ACTGCATGCTATACGTTCAATGA 58.558 39.130 20.33 0.00 0.00 2.57
652 668 4.261489 GCAAGCTCAAATACTGCATGCTAT 60.261 41.667 20.33 9.39 44.57 2.97
708 724 2.195956 GAAGCCAGCCATACCCCC 59.804 66.667 0.00 0.00 0.00 5.40
709 725 2.203209 CGAAGCCAGCCATACCCC 60.203 66.667 0.00 0.00 0.00 4.95
710 726 1.523938 GACGAAGCCAGCCATACCC 60.524 63.158 0.00 0.00 0.00 3.69
711 727 0.811616 CTGACGAAGCCAGCCATACC 60.812 60.000 0.00 0.00 0.00 2.73
712 728 0.175760 TCTGACGAAGCCAGCCATAC 59.824 55.000 0.00 0.00 0.00 2.39
734 750 4.021981 TCCTAGCACGTATCAATGGATGAG 60.022 45.833 0.00 0.00 42.53 2.90
752 768 1.892474 GATGCTAGCCACTCCTCCTAG 59.108 57.143 13.29 0.00 33.41 3.02
754 770 1.112315 CGATGCTAGCCACTCCTCCT 61.112 60.000 13.29 0.00 0.00 3.69
755 771 1.365633 CGATGCTAGCCACTCCTCC 59.634 63.158 13.29 0.00 0.00 4.30
756 772 0.461961 AACGATGCTAGCCACTCCTC 59.538 55.000 13.29 0.00 0.00 3.71
836 852 5.043903 TGTAGCGCTAAGAAGATGATGAAC 58.956 41.667 20.73 4.33 0.00 3.18
843 859 2.517650 GCCTGTAGCGCTAAGAAGAT 57.482 50.000 20.73 0.00 0.00 2.40
884 902 5.391629 GGATTTGGGAAACGACAACATCTAC 60.392 44.000 0.00 0.00 0.00 2.59
928 946 4.496341 CCTCTGCCAATTATTGCGTAACTG 60.496 45.833 0.00 0.00 0.00 3.16
930 948 3.377172 ACCTCTGCCAATTATTGCGTAAC 59.623 43.478 0.00 0.00 0.00 2.50
1147 1165 2.158696 CCTTGATGTCCCCCAGATCTTC 60.159 54.545 0.00 0.00 0.00 2.87
1177 1195 4.162040 CCCCCATAATAGCTGGATCATC 57.838 50.000 0.00 0.00 35.70 2.92
1208 1226 1.458777 TTGACCCAGGTCCTGTCGT 60.459 57.895 17.85 12.75 43.97 4.34
1289 1307 2.126307 CGGCCTCGAGGATATGCG 60.126 66.667 35.69 11.12 39.00 4.73
1299 1317 2.852495 TTTTAGCTGCCTCGGCCTCG 62.852 60.000 0.00 0.00 41.09 4.63
1416 1434 2.704464 TGAGCTGATTCAGTGATGGG 57.296 50.000 14.90 0.00 33.43 4.00
1419 1437 4.019501 ACTTCCTTGAGCTGATTCAGTGAT 60.020 41.667 14.90 2.13 33.43 3.06
1507 1525 3.006323 CAGAGTGGAGAAAGTACAGCACT 59.994 47.826 0.00 0.00 40.05 4.40
1586 1604 1.000827 CTAGCTGCTCATACTCCACGG 60.001 57.143 4.91 0.00 0.00 4.94
1644 1662 2.303311 GTGGCCTATGAGGGAGATAACC 59.697 54.545 3.32 0.00 35.37 2.85
1665 1683 4.547367 GTCTTCCCCATCCCGCCG 62.547 72.222 0.00 0.00 0.00 6.46
1770 1788 2.871022 CCAAATCTCTGCCAGAAGATCG 59.129 50.000 0.00 0.00 33.62 3.69
1773 1791 3.328931 ACTTCCAAATCTCTGCCAGAAGA 59.671 43.478 0.00 0.00 33.62 2.87
1856 1874 3.070576 GGGATGCCAGTTGTGCCC 61.071 66.667 0.00 0.00 0.00 5.36
1908 1926 2.409975 TCGTTGATGTCCTTTTCGTCC 58.590 47.619 0.00 0.00 0.00 4.79
1923 1941 0.805614 TCCTTCTCTCGCTCTCGTTG 59.194 55.000 0.00 0.00 36.96 4.10
2035 2053 3.189287 CCGTTCAGGAAGATGGTTTCTTG 59.811 47.826 0.00 0.00 44.88 3.02
2055 2073 3.118629 TCATCTCTTCAGGTTTGATCCCG 60.119 47.826 0.00 0.00 32.27 5.14
2104 2122 1.758440 ATGGTACCATCGGCGCTGAT 61.758 55.000 26.02 26.02 29.42 2.90
2105 2123 2.363711 GATGGTACCATCGGCGCTGA 62.364 60.000 33.48 23.40 42.55 4.26
2236 2269 2.625314 TGTGGCATTCGATGTTTTCCAA 59.375 40.909 0.00 0.00 0.00 3.53
2240 2273 2.731968 GCGATGTGGCATTCGATGTTTT 60.732 45.455 21.94 0.00 37.55 2.43
2247 2280 3.940640 CCGGCGATGTGGCATTCG 61.941 66.667 9.30 15.73 45.16 3.34
2268 2301 4.844420 GCGAGATGGCTTGCTACT 57.156 55.556 0.00 0.00 46.18 2.57
2273 2306 0.250209 ATAGCTGGCGAGATGGCTTG 60.250 55.000 0.00 0.00 45.14 4.01
2329 2362 2.492012 GTCTGGGAATATGCTGCAGAG 58.508 52.381 20.43 2.00 0.00 3.35
2347 2380 0.949397 GGTTCAAACCTCCAACCGTC 59.051 55.000 4.63 0.00 45.75 4.79
2364 2397 1.346062 TCTTGCTCAGCTTCTCAGGT 58.654 50.000 0.00 0.00 0.00 4.00
2378 2411 1.404391 CAAGAGCCATCCACATCTTGC 59.596 52.381 1.28 0.00 41.39 4.01
2448 2514 4.459089 GAGCGGTCCACCAGCTCC 62.459 72.222 21.98 11.02 46.71 4.70
2493 2559 3.782046 ACGATTATGTTTGTCTCCTCCG 58.218 45.455 0.00 0.00 0.00 4.63
2535 2601 1.995484 GCATCACGTATCATCCGATGG 59.005 52.381 8.54 0.00 35.18 3.51
2597 2664 1.686052 GAGGGATGCTAGTCCTGTCTG 59.314 57.143 0.00 0.00 38.38 3.51
2603 2670 0.761802 CCTTGGAGGGATGCTAGTCC 59.238 60.000 0.00 0.00 37.56 3.85
2666 2733 2.879646 CCGAGTCCTATGGAGTACTCAC 59.120 54.545 23.91 12.26 38.60 3.51
2721 2788 1.995484 GCGATACCATCATCATCACCG 59.005 52.381 0.00 0.00 0.00 4.94
2726 2793 1.348696 TGGCAGCGATACCATCATCAT 59.651 47.619 0.00 0.00 0.00 2.45
2727 2794 0.758123 TGGCAGCGATACCATCATCA 59.242 50.000 0.00 0.00 0.00 3.07
2728 2795 2.105006 ATGGCAGCGATACCATCATC 57.895 50.000 0.00 0.00 43.26 2.92
2729 2796 2.156917 CAATGGCAGCGATACCATCAT 58.843 47.619 5.76 0.00 46.04 2.45
2730 2797 1.140652 TCAATGGCAGCGATACCATCA 59.859 47.619 5.76 0.00 46.04 3.07
2731 2798 1.532868 GTCAATGGCAGCGATACCATC 59.467 52.381 5.76 0.00 46.04 3.51
2733 2800 0.251634 TGTCAATGGCAGCGATACCA 59.748 50.000 0.00 0.00 41.06 3.25
2734 2801 1.378531 TTGTCAATGGCAGCGATACC 58.621 50.000 0.00 0.00 0.00 2.73
2735 2802 2.677836 TCTTTGTCAATGGCAGCGATAC 59.322 45.455 0.00 0.00 0.00 2.24
2736 2803 2.984562 TCTTTGTCAATGGCAGCGATA 58.015 42.857 0.00 0.00 0.00 2.92
2737 2804 1.825090 TCTTTGTCAATGGCAGCGAT 58.175 45.000 0.00 0.00 0.00 4.58
2741 2808 6.057533 TGGAGTATATCTTTGTCAATGGCAG 58.942 40.000 0.00 0.00 0.00 4.85
2769 2836 3.555168 CCAGTACTCTCACACCCTTGAAC 60.555 52.174 0.00 0.00 0.00 3.18
2815 2882 1.941325 CCAATACTCGCTGGAAGTCC 58.059 55.000 0.00 0.00 34.35 3.85
2816 2883 1.291132 GCCAATACTCGCTGGAAGTC 58.709 55.000 0.00 0.00 34.35 3.01
2848 2915 1.415200 GGAAGGCCTAGGTACCTCAG 58.585 60.000 20.32 12.33 34.31 3.35
2911 2978 4.033358 CACACTCAGTGTCTGAAGAAACAC 59.967 45.833 7.74 0.00 43.92 3.32
2953 3023 2.902486 TGGTGATGCACTCTCTCTTCTT 59.098 45.455 0.00 0.00 34.40 2.52
2955 3025 2.999355 GTTGGTGATGCACTCTCTCTTC 59.001 50.000 0.00 0.00 34.40 2.87
3009 3079 0.382515 CCTGGAACTCGATCGACTCC 59.617 60.000 25.06 25.06 0.00 3.85
3038 3108 0.179070 GTGCCCTTCCTTCTCCGATC 60.179 60.000 0.00 0.00 0.00 3.69
3087 3157 1.743252 GCTCAGCGTCTTCCCAAGG 60.743 63.158 0.00 0.00 0.00 3.61
3171 3241 0.390472 GCTTCAGGACCTTGACGGAG 60.390 60.000 0.00 0.00 36.31 4.63
3299 3369 2.674796 ACGAAGTTCATGGAGGTAGC 57.325 50.000 3.32 0.00 37.78 3.58
3519 3589 3.308323 CCAGCACGATCTTCTTAAGCTTC 59.692 47.826 0.00 0.00 0.00 3.86
3679 3749 3.197790 CCCCTTGACGCGCAGATG 61.198 66.667 5.73 0.00 0.00 2.90
3771 3844 2.997897 AGGGAGAGGGACGCACAC 60.998 66.667 0.00 0.00 0.00 3.82
3778 3851 1.621822 ACGTAGGGAGGGAGAGGGA 60.622 63.158 0.00 0.00 0.00 4.20
3779 3852 1.455959 CACGTAGGGAGGGAGAGGG 60.456 68.421 0.00 0.00 0.00 4.30
3780 3853 2.128507 GCACGTAGGGAGGGAGAGG 61.129 68.421 0.00 0.00 0.00 3.69
3781 3854 0.757188 ATGCACGTAGGGAGGGAGAG 60.757 60.000 0.00 0.00 0.00 3.20
3782 3855 1.043116 CATGCACGTAGGGAGGGAGA 61.043 60.000 0.00 0.00 0.00 3.71
3783 3856 1.443407 CATGCACGTAGGGAGGGAG 59.557 63.158 0.00 0.00 0.00 4.30
3800 3873 0.463654 AGAAACTGCACCACGAAGCA 60.464 50.000 0.00 0.00 39.25 3.91
3858 3934 8.314021 ACATCCAGATCAAATAAAGGGTTTTTC 58.686 33.333 0.00 0.00 0.00 2.29
3864 3940 5.452356 GGCAACATCCAGATCAAATAAAGGG 60.452 44.000 0.00 0.00 0.00 3.95
3866 3942 6.461110 AGGCAACATCCAGATCAAATAAAG 57.539 37.500 0.00 0.00 41.41 1.85
3894 3970 1.415200 AGGTAGCTAGCCAGTAAGCC 58.585 55.000 19.06 1.20 39.64 4.35
3946 4022 2.927429 TCCACGCAATTGATTGAAACG 58.073 42.857 10.34 3.66 40.14 3.60
3954 4030 1.969064 CCCCGTTCCACGCAATTGA 60.969 57.895 10.34 0.00 40.91 2.57
3955 4031 2.566010 CCCCGTTCCACGCAATTG 59.434 61.111 0.00 0.00 40.91 2.32
3962 4038 1.820519 GGTTTTTATCCCCCGTTCCAC 59.179 52.381 0.00 0.00 0.00 4.02
3996 4129 6.492087 AGAGTTCTAGATAATAGAGTGGTGCC 59.508 42.308 0.00 0.00 0.00 5.01
4016 4149 7.044181 CCACATGTATGACACTTATCAGAGTT 58.956 38.462 0.00 0.00 30.46 3.01
4019 4152 5.104982 TGCCACATGTATGACACTTATCAGA 60.105 40.000 0.00 0.00 30.46 3.27
4030 4163 1.338579 TGCTTCGTGCCACATGTATGA 60.339 47.619 0.00 0.00 42.00 2.15
4035 4168 1.621107 GAATTGCTTCGTGCCACATG 58.379 50.000 0.00 0.00 42.00 3.21
4036 4169 0.527565 GGAATTGCTTCGTGCCACAT 59.472 50.000 0.00 0.00 42.00 3.21
4038 4171 0.527565 ATGGAATTGCTTCGTGCCAC 59.472 50.000 0.00 0.00 42.00 5.01
4041 4174 1.098050 AGGATGGAATTGCTTCGTGC 58.902 50.000 7.15 0.00 43.25 5.34
4054 4187 2.954318 CCATAGAAAACCAGCAGGATGG 59.046 50.000 0.35 1.29 46.47 3.51
4062 4195 4.935808 ACTAAACTCGCCATAGAAAACCAG 59.064 41.667 0.00 0.00 0.00 4.00
4063 4196 4.901868 ACTAAACTCGCCATAGAAAACCA 58.098 39.130 0.00 0.00 0.00 3.67
4065 4198 7.516312 CGGATAACTAAACTCGCCATAGAAAAC 60.516 40.741 0.00 0.00 0.00 2.43
4070 4203 5.117355 TCGGATAACTAAACTCGCCATAG 57.883 43.478 0.00 0.00 0.00 2.23
4077 4210 4.202223 TGCCATCCTCGGATAACTAAACTC 60.202 45.833 0.00 0.00 32.93 3.01
4094 4227 5.229423 TGCTTCACAACTAAAATTGCCATC 58.771 37.500 0.00 0.00 32.47 3.51
4104 4237 6.712095 AGAAGATTGTCATGCTTCACAACTAA 59.288 34.615 14.19 0.00 40.26 2.24
4124 4257 3.228188 ACTTGCCATCCAAACAGAAGA 57.772 42.857 0.00 0.00 31.94 2.87
4125 4258 4.326504 AAACTTGCCATCCAAACAGAAG 57.673 40.909 0.00 0.00 31.94 2.85
4191 4327 0.168128 GTGGCACGAAATAGCACCAC 59.832 55.000 0.00 0.00 40.64 4.16
4197 4333 2.728846 GCACACATGTGGCACGAAATAG 60.729 50.000 28.64 2.94 45.72 1.73
4214 4350 1.472082 CCGCAAATGATAACTGGCACA 59.528 47.619 0.00 0.00 0.00 4.57
4218 4354 7.672983 ATAGATAACCGCAAATGATAACTGG 57.327 36.000 0.00 0.00 0.00 4.00
4226 4362 7.604164 AGATGTCCTAATAGATAACCGCAAATG 59.396 37.037 0.00 0.00 0.00 2.32
4227 4363 7.680730 AGATGTCCTAATAGATAACCGCAAAT 58.319 34.615 0.00 0.00 0.00 2.32
4232 4368 9.574458 CATTGTAGATGTCCTAATAGATAACCG 57.426 37.037 0.00 0.00 0.00 4.44
4234 4370 9.372369 GGCATTGTAGATGTCCTAATAGATAAC 57.628 37.037 0.00 0.00 0.00 1.89
4274 4410 2.497770 GGTCCGGACGTATGTGGG 59.502 66.667 27.68 0.00 0.00 4.61
4277 4413 4.183686 CGCGGTCCGGACGTATGT 62.184 66.667 27.68 0.00 0.00 2.29
4292 4428 2.350498 ACACAATATGTTTAGACCGCGC 59.650 45.455 0.00 0.00 38.98 6.86
4295 4431 4.809426 GGAGGACACAATATGTTTAGACCG 59.191 45.833 0.00 0.00 43.56 4.79
4296 4432 5.741011 TGGAGGACACAATATGTTTAGACC 58.259 41.667 0.00 0.00 43.56 3.85
4304 4440 4.139786 CCCAGATTGGAGGACACAATATG 58.860 47.826 5.96 5.96 43.48 1.78
4307 4443 1.995542 ACCCAGATTGGAGGACACAAT 59.004 47.619 0.00 0.00 40.96 2.71
4315 4451 3.819564 TCGATACAACCCAGATTGGAG 57.180 47.619 0.00 0.00 40.96 3.86
4322 4458 2.135664 GACGGATCGATACAACCCAG 57.864 55.000 8.69 0.21 0.00 4.45
4345 4482 2.312436 GGAAAACACGTCCGGACCG 61.312 63.158 28.52 23.77 0.00 4.79
4362 4499 0.382515 TTGTTTTCGGTTTGCGGAGG 59.617 50.000 0.00 0.00 0.00 4.30
4364 4501 1.473278 AGTTTGTTTTCGGTTTGCGGA 59.527 42.857 0.00 0.00 0.00 5.54
4366 4503 3.040099 CCTAGTTTGTTTTCGGTTTGCG 58.960 45.455 0.00 0.00 0.00 4.85
4377 4514 3.565670 CCCATAAAGCCCCCTAGTTTGTT 60.566 47.826 0.00 0.00 0.00 2.83
4388 4525 0.544697 TTCGGACTCCCATAAAGCCC 59.455 55.000 0.00 0.00 0.00 5.19
4395 4532 2.683933 AGCGGTTCGGACTCCCAT 60.684 61.111 0.00 0.00 0.00 4.00
4396 4533 3.691342 CAGCGGTTCGGACTCCCA 61.691 66.667 0.00 0.00 0.00 4.37
4400 4537 3.706373 ATGGCAGCGGTTCGGACT 61.706 61.111 0.00 0.00 0.00 3.85
4436 4573 2.263021 GGGGTTTTTCCGTGGGTCG 61.263 63.158 0.00 0.00 37.00 4.79
4438 4575 1.152138 GAGGGGTTTTTCCGTGGGT 59.848 57.895 0.00 0.00 37.00 4.51
4445 4582 1.157585 GCGAGAGTGAGGGGTTTTTC 58.842 55.000 0.00 0.00 0.00 2.29
4464 4601 4.379243 ACGTGAGGAGCCAAGCGG 62.379 66.667 0.00 0.00 0.00 5.52
4475 4882 0.460284 AAATAGCAGGCGGACGTGAG 60.460 55.000 0.00 0.00 33.41 3.51
4481 4888 3.687698 GTCTTGTTTAAATAGCAGGCGGA 59.312 43.478 0.00 0.00 0.00 5.54
4484 4891 4.700213 TCTGGTCTTGTTTAAATAGCAGGC 59.300 41.667 15.66 2.46 36.56 4.85
4488 4895 7.538678 CACAACATCTGGTCTTGTTTAAATAGC 59.461 37.037 0.00 0.00 33.93 2.97
4496 4903 2.653726 TGCACAACATCTGGTCTTGTT 58.346 42.857 0.00 0.00 36.53 2.83
4502 4909 1.956477 GGTTCTTGCACAACATCTGGT 59.044 47.619 9.41 0.00 0.00 4.00
4508 4915 1.444119 GGAGCGGTTCTTGCACAACA 61.444 55.000 9.41 0.00 33.85 3.33
4509 4916 1.282875 GGAGCGGTTCTTGCACAAC 59.717 57.895 0.00 0.00 33.85 3.32
4511 4918 1.891919 GTGGAGCGGTTCTTGCACA 60.892 57.895 0.00 0.00 33.85 4.57
4534 4941 1.753649 CAAGGAGGAGATGAAGAGCGA 59.246 52.381 0.00 0.00 0.00 4.93
4585 4992 3.840666 AGATTGCCTCTTCCTACTCAACA 59.159 43.478 0.00 0.00 0.00 3.33
4588 4995 2.690497 CGAGATTGCCTCTTCCTACTCA 59.310 50.000 0.00 0.00 39.78 3.41
4600 5007 1.895707 CCCAGCCATCGAGATTGCC 60.896 63.158 5.66 0.00 30.50 4.52
4602 5009 0.816825 CCACCCAGCCATCGAGATTG 60.817 60.000 0.00 0.00 0.00 2.67
4603 5010 0.982852 TCCACCCAGCCATCGAGATT 60.983 55.000 0.00 0.00 0.00 2.40
4604 5011 0.765903 ATCCACCCAGCCATCGAGAT 60.766 55.000 0.00 0.00 0.00 2.75
4609 5016 1.527844 GCAGATCCACCCAGCCATC 60.528 63.158 0.00 0.00 0.00 3.51
4614 5031 2.202987 GCTCGCAGATCCACCCAG 60.203 66.667 0.00 0.00 33.89 4.45
4635 5052 2.055633 TTGCCTGGCTCGTATCCGA 61.056 57.895 21.03 0.00 41.73 4.55
4674 5091 3.305619 TACTGGCGGCCTAGGGTGA 62.306 63.158 21.46 0.00 0.00 4.02
4680 5097 2.439960 CCATGGTACTGGCGGCCTA 61.440 63.158 21.46 1.72 0.00 3.93
4686 5103 1.224592 CCTCACCCATGGTACTGGC 59.775 63.158 11.73 0.00 32.11 4.85
4687 5104 1.224592 GCCTCACCCATGGTACTGG 59.775 63.158 11.73 8.72 32.11 4.00
4688 5105 0.107508 CAGCCTCACCCATGGTACTG 60.108 60.000 11.73 2.94 32.11 2.74
4705 5122 2.357517 ACCTTTGAGCGGCGACAG 60.358 61.111 12.98 0.93 0.00 3.51
4728 5145 3.286751 GGCGAGTTGCTGCACCAA 61.287 61.111 0.00 0.00 45.43 3.67
4736 5153 3.793144 CTTGGAGCGGCGAGTTGC 61.793 66.667 12.98 0.33 45.38 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.