Multiple sequence alignment - TraesCS2A01G029000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G029000 chr2A 100.000 3579 0 0 1 3579 13040390 13036812 0.000000e+00 6610.0
1 TraesCS2A01G029000 chr2A 82.201 1590 228 30 992 2569 13013237 13014783 0.000000e+00 1317.0
2 TraesCS2A01G029000 chr2B 92.746 2688 148 12 73 2744 19076031 19073375 0.000000e+00 3840.0
3 TraesCS2A01G029000 chr2B 92.990 1341 86 2 1278 2610 18922416 18923756 0.000000e+00 1949.0
4 TraesCS2A01G029000 chr2B 81.345 1576 227 31 1014 2569 18950299 18948771 0.000000e+00 1219.0
5 TraesCS2A01G029000 chr2B 81.268 1057 167 15 1635 2685 19077491 19076460 0.000000e+00 826.0
6 TraesCS2A01G029000 chr2B 89.189 666 32 15 654 1282 18915067 18915729 0.000000e+00 795.0
7 TraesCS2A01G029000 chr2B 92.958 71 3 1 2674 2744 18923774 18923842 6.320000e-18 102.0
8 TraesCS2A01G029000 chr2B 96.364 55 2 0 589 643 18914966 18915020 1.370000e-14 91.6
9 TraesCS2A01G029000 chr2B 100.000 38 0 0 612 649 18914926 18914963 1.780000e-08 71.3
10 TraesCS2A01G029000 chr2D 92.730 1458 88 5 73 1525 12582424 12580980 0.000000e+00 2089.0
11 TraesCS2A01G029000 chr2D 87.819 1174 127 8 1582 2745 12580955 12579788 0.000000e+00 1362.0
12 TraesCS2A01G029000 chr2D 84.855 964 132 10 1607 2569 12557189 12558139 0.000000e+00 959.0
13 TraesCS2A01G029000 chr2D 81.939 526 75 12 1014 1523 12556610 12557131 9.180000e-116 427.0
14 TraesCS2A01G029000 chr2D 89.030 237 21 3 3347 3579 12579267 12579032 4.520000e-74 289.0
15 TraesCS2A01G029000 chr2D 82.822 326 22 15 2877 3195 12579562 12579264 9.860000e-66 261.0
16 TraesCS2A01G029000 chr5B 87.629 291 33 2 3278 3566 485906090 485906379 5.730000e-88 335.0
17 TraesCS2A01G029000 chr5A 83.754 357 50 7 3228 3578 509654714 509654360 7.410000e-87 331.0
18 TraesCS2A01G029000 chr5A 80.696 316 40 7 3253 3566 599799909 599799613 3.600000e-55 226.0
19 TraesCS2A01G029000 chr7D 77.075 506 101 10 1023 1518 8454235 8453735 9.790000e-71 278.0
20 TraesCS2A01G029000 chr5D 84.912 285 32 4 3286 3566 404495860 404496137 9.790000e-71 278.0
21 TraesCS2A01G029000 chr6A 80.287 279 48 6 1024 1297 563484792 563485068 1.680000e-48 204.0
22 TraesCS2A01G029000 chr6A 79.211 279 51 6 1024 1297 553913268 553912992 1.700000e-43 187.0
23 TraesCS2A01G029000 chr6B 78.495 279 55 4 1023 1297 633730707 633730984 1.020000e-40 178.0
24 TraesCS2A01G029000 chr6B 97.561 41 1 0 1 41 38225442 38225482 1.780000e-08 71.3
25 TraesCS2A01G029000 chr4B 77.682 233 48 4 1028 1258 604139343 604139573 4.820000e-29 139.0
26 TraesCS2A01G029000 chr1B 95.652 46 2 0 1 46 24568947 24568992 1.380000e-09 75.0
27 TraesCS2A01G029000 chrUn 97.368 38 1 0 1 38 87234830 87234793 8.290000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G029000 chr2A 13036812 13040390 3578 True 6610.00 6610 100.000000 1 3579 1 chr2A.!!$R1 3578
1 TraesCS2A01G029000 chr2A 13013237 13014783 1546 False 1317.00 1317 82.201000 992 2569 1 chr2A.!!$F1 1577
2 TraesCS2A01G029000 chr2B 19073375 19077491 4116 True 2333.00 3840 87.007000 73 2744 2 chr2B.!!$R2 2671
3 TraesCS2A01G029000 chr2B 18948771 18950299 1528 True 1219.00 1219 81.345000 1014 2569 1 chr2B.!!$R1 1555
4 TraesCS2A01G029000 chr2B 18922416 18923842 1426 False 1025.50 1949 92.974000 1278 2744 2 chr2B.!!$F2 1466
5 TraesCS2A01G029000 chr2B 18914926 18915729 803 False 319.30 795 95.184333 589 1282 3 chr2B.!!$F1 693
6 TraesCS2A01G029000 chr2D 12579032 12582424 3392 True 1000.25 2089 88.100250 73 3579 4 chr2D.!!$R1 3506
7 TraesCS2A01G029000 chr2D 12556610 12558139 1529 False 693.00 959 83.397000 1014 2569 2 chr2D.!!$F1 1555
8 TraesCS2A01G029000 chr7D 8453735 8454235 500 True 278.00 278 77.075000 1023 1518 1 chr7D.!!$R1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.386113 CGGCTAGGTCCAGAGCTAAC 59.614 60.0 13.79 3.78 40.42 2.34 F
1833 3347 0.528017 ATTGACGAGCTCGAGCAGAA 59.472 50.0 40.58 22.62 45.16 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 3409 0.610687 ACCAGCTGCTCAGTAAGGAC 59.389 55.0 8.66 0.0 0.0 3.85 R
3299 4926 0.037303 CCACTGTGTTGGCTCCTGAT 59.963 55.0 7.08 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.282885 GGCAGAAATCTAGGGTTCTTGG 58.717 50.000 6.20 0.01 31.66 3.61
22 23 3.282885 GCAGAAATCTAGGGTTCTTGGG 58.717 50.000 6.20 0.00 31.66 4.12
24 25 4.775236 CAGAAATCTAGGGTTCTTGGGAG 58.225 47.826 6.20 0.00 31.66 4.30
25 26 3.783082 AGAAATCTAGGGTTCTTGGGAGG 59.217 47.826 3.71 0.00 29.67 4.30
27 28 0.976073 TCTAGGGTTCTTGGGAGGCG 60.976 60.000 0.00 0.00 0.00 5.52
43 44 3.905678 CGGCGGCTAGGTCCAGAG 61.906 72.222 7.61 0.00 0.00 3.35
44 45 4.228567 GGCGGCTAGGTCCAGAGC 62.229 72.222 0.00 7.17 38.00 4.09
45 46 3.151022 GCGGCTAGGTCCAGAGCT 61.151 66.667 13.79 4.58 42.47 4.09
46 47 1.828660 GCGGCTAGGTCCAGAGCTA 60.829 63.158 13.79 6.43 40.09 3.32
48 49 0.386113 CGGCTAGGTCCAGAGCTAAC 59.614 60.000 13.79 3.78 40.42 2.34
49 50 1.486211 GGCTAGGTCCAGAGCTAACA 58.514 55.000 13.79 0.00 40.42 2.41
50 51 2.043227 GGCTAGGTCCAGAGCTAACAT 58.957 52.381 13.79 0.00 40.42 2.71
51 52 2.436173 GGCTAGGTCCAGAGCTAACATT 59.564 50.000 13.79 0.00 40.42 2.71
52 53 3.462021 GCTAGGTCCAGAGCTAACATTG 58.538 50.000 7.88 0.00 40.42 2.82
53 54 3.742640 GCTAGGTCCAGAGCTAACATTGG 60.743 52.174 7.88 0.00 40.42 3.16
55 56 3.118531 AGGTCCAGAGCTAACATTGGAT 58.881 45.455 0.00 0.00 41.41 3.41
56 57 3.525199 AGGTCCAGAGCTAACATTGGATT 59.475 43.478 0.00 0.00 41.41 3.01
57 58 4.018050 AGGTCCAGAGCTAACATTGGATTT 60.018 41.667 0.00 0.00 41.41 2.17
58 59 4.706962 GGTCCAGAGCTAACATTGGATTTT 59.293 41.667 6.65 0.00 41.41 1.82
59 60 5.163612 GGTCCAGAGCTAACATTGGATTTTC 60.164 44.000 6.65 0.00 41.41 2.29
61 62 6.823689 GTCCAGAGCTAACATTGGATTTTCTA 59.176 38.462 6.65 0.00 41.41 2.10
62 63 7.336931 GTCCAGAGCTAACATTGGATTTTCTAA 59.663 37.037 6.65 0.00 41.41 2.10
63 64 8.055181 TCCAGAGCTAACATTGGATTTTCTAAT 58.945 33.333 0.00 0.00 34.90 1.73
65 66 8.896744 CAGAGCTAACATTGGATTTTCTAATCA 58.103 33.333 0.00 0.00 41.62 2.57
66 67 9.466497 AGAGCTAACATTGGATTTTCTAATCAA 57.534 29.630 0.00 0.00 41.62 2.57
69 70 9.173939 GCTAACATTGGATTTTCTAATCAATCG 57.826 33.333 0.00 0.00 41.62 3.34
176 1565 2.433868 TGTCCTACGTTCAAGAGCAC 57.566 50.000 0.00 0.00 0.00 4.40
394 1787 8.972458 TTAGGTTGTATATCAGCATTTTAGCA 57.028 30.769 0.00 0.00 36.85 3.49
776 2216 2.747446 GGCAAACGACATGACCACTTAT 59.253 45.455 0.00 0.00 0.00 1.73
827 2267 2.021793 CATCGTGCATTCGTGCCG 59.978 61.111 0.00 2.05 0.00 5.69
986 2451 3.338249 TCTTGAGCTGCATTTCTACCAC 58.662 45.455 1.02 0.00 0.00 4.16
1230 2708 0.609131 CCATTCCTGACGGTTTGCCT 60.609 55.000 0.00 0.00 0.00 4.75
1231 2709 1.247567 CATTCCTGACGGTTTGCCTT 58.752 50.000 0.00 0.00 0.00 4.35
1235 2713 0.744281 CCTGACGGTTTGCCTTTGTT 59.256 50.000 0.00 0.00 0.00 2.83
1299 2801 0.842030 TCATGACCACCTGCCTCCTT 60.842 55.000 0.00 0.00 0.00 3.36
1369 2871 1.714899 GCCAGTGAGTTGCGTTGTGT 61.715 55.000 0.00 0.00 0.00 3.72
1377 2879 1.518792 TTGCGTTGTGTCGGACGAA 60.519 52.632 3.34 0.00 41.53 3.85
1588 3102 2.224079 CCCGAAGATATGTTGCATTCCG 59.776 50.000 0.00 0.00 0.00 4.30
1600 3114 1.670295 TGCATTCCGTATGTGTGATGC 59.330 47.619 0.00 0.00 36.57 3.91
1833 3347 0.528017 ATTGACGAGCTCGAGCAGAA 59.472 50.000 40.58 22.62 45.16 3.02
1865 3379 2.126882 CCATGTGTTCCATCCTCCCTA 58.873 52.381 0.00 0.00 0.00 3.53
1867 3381 3.909995 CCATGTGTTCCATCCTCCCTATA 59.090 47.826 0.00 0.00 0.00 1.31
1895 3409 3.269347 CCATCGGCCCGCTTAACG 61.269 66.667 0.00 0.00 43.15 3.18
2120 3640 1.478510 GCTTCGACTTCCTCTGGATCA 59.521 52.381 0.00 0.00 0.00 2.92
2173 3693 1.644509 TGCTGCCTTCTGAGTTCCTA 58.355 50.000 0.00 0.00 0.00 2.94
2176 3696 2.433970 GCTGCCTTCTGAGTTCCTAGAT 59.566 50.000 0.00 0.00 0.00 1.98
2179 3699 2.169352 GCCTTCTGAGTTCCTAGATGCA 59.831 50.000 0.00 0.00 0.00 3.96
2194 3714 2.521708 GCAACCAAGGGCAGGTGT 60.522 61.111 0.00 0.00 39.86 4.16
2278 3798 2.358737 CACTGCGGGTGGAACTCC 60.359 66.667 0.00 0.00 41.90 3.85
2344 3864 2.280797 TTCGCCGAGCAGCAAACT 60.281 55.556 0.00 0.00 0.00 2.66
2422 3942 3.636231 CGGGAGGTGGTTGAGGCA 61.636 66.667 0.00 0.00 0.00 4.75
2588 4113 4.353777 ACTACTCCACTAAGAATGCTGGA 58.646 43.478 0.00 0.00 0.00 3.86
2614 4139 5.359009 AGAATTCGGAATTTGAGATGCATGT 59.641 36.000 16.49 0.00 0.00 3.21
2627 4152 0.255604 TGCATGTGGATCCAACCGAT 59.744 50.000 18.20 3.45 0.00 4.18
2664 4189 4.083110 CGAATTTGAGTTTCTGCATGGACT 60.083 41.667 0.00 0.00 0.00 3.85
2665 4190 4.778534 ATTTGAGTTTCTGCATGGACTG 57.221 40.909 0.00 0.00 0.00 3.51
2666 4191 2.936919 TGAGTTTCTGCATGGACTGT 57.063 45.000 0.00 0.00 0.00 3.55
2667 4192 3.213206 TGAGTTTCTGCATGGACTGTT 57.787 42.857 0.00 0.00 0.00 3.16
2708 4235 3.772572 TGTACTTGGCTATGAGGTTAGCA 59.227 43.478 5.89 0.00 45.21 3.49
2709 4236 4.408921 TGTACTTGGCTATGAGGTTAGCAT 59.591 41.667 5.89 0.00 45.21 3.79
2745 4272 0.947180 GTGGCCGTGCGAGAAGTTAA 60.947 55.000 0.00 0.00 0.00 2.01
2746 4273 0.036765 TGGCCGTGCGAGAAGTTAAT 60.037 50.000 0.00 0.00 0.00 1.40
2747 4274 0.373716 GGCCGTGCGAGAAGTTAATG 59.626 55.000 0.00 0.00 0.00 1.90
2748 4275 0.247695 GCCGTGCGAGAAGTTAATGC 60.248 55.000 0.00 0.00 0.00 3.56
2749 4276 1.075542 CCGTGCGAGAAGTTAATGCA 58.924 50.000 0.00 0.00 0.00 3.96
2750 4277 1.463056 CCGTGCGAGAAGTTAATGCAA 59.537 47.619 0.00 0.00 37.30 4.08
2751 4278 2.095853 CCGTGCGAGAAGTTAATGCAAT 59.904 45.455 0.00 0.00 37.30 3.56
2752 4279 3.093574 CGTGCGAGAAGTTAATGCAATG 58.906 45.455 0.00 0.00 37.30 2.82
2753 4280 2.848302 GTGCGAGAAGTTAATGCAATGC 59.152 45.455 0.00 0.00 37.30 3.56
2754 4281 2.487372 TGCGAGAAGTTAATGCAATGCA 59.513 40.909 11.44 11.44 44.86 3.96
2755 4282 3.057666 TGCGAGAAGTTAATGCAATGCAA 60.058 39.130 13.45 0.00 43.62 4.08
2756 4283 4.107622 GCGAGAAGTTAATGCAATGCAAT 58.892 39.130 13.45 6.50 43.62 3.56
2758 4285 5.097529 CGAGAAGTTAATGCAATGCAATGT 58.902 37.500 13.45 3.16 43.62 2.71
2760 4287 5.786311 AGAAGTTAATGCAATGCAATGTGT 58.214 33.333 13.45 0.00 43.62 3.72
2761 4288 6.225318 AGAAGTTAATGCAATGCAATGTGTT 58.775 32.000 13.45 3.92 43.62 3.32
2762 4289 6.707161 AGAAGTTAATGCAATGCAATGTGTTT 59.293 30.769 13.45 3.11 43.62 2.83
2763 4290 6.864360 AGTTAATGCAATGCAATGTGTTTT 57.136 29.167 13.45 2.31 43.62 2.43
2764 4291 6.660722 AGTTAATGCAATGCAATGTGTTTTG 58.339 32.000 13.45 0.00 43.62 2.44
2772 4345 7.172703 TGCAATGCAATGTGTTTTGAATTATGA 59.827 29.630 5.01 0.00 33.41 2.15
2784 4357 9.681692 TGTTTTGAATTATGATTGTGAGACTTG 57.318 29.630 0.00 0.00 0.00 3.16
2797 4370 9.950680 GATTGTGAGACTTGATACTTTGAAAAA 57.049 29.630 0.00 0.00 0.00 1.94
2834 4433 5.751586 AGTGTACCTTCTTTCAGGAAAACA 58.248 37.500 0.00 0.00 37.39 2.83
2835 4434 5.589050 AGTGTACCTTCTTTCAGGAAAACAC 59.411 40.000 13.34 13.34 41.19 3.32
2842 4441 6.238648 CCTTCTTTCAGGAAAACACGTAATGT 60.239 38.462 0.00 0.00 38.76 2.71
2843 4442 8.201703 CCTTCTTTCAGGAAAACACGTAATGTG 61.202 40.741 0.00 0.00 44.86 3.21
2901 4522 4.684485 CGATCTCACCTAAAGGGCAGATTT 60.684 45.833 11.37 0.00 37.64 2.17
2908 4529 7.867921 TCACCTAAAGGGCAGATTTTATTCTA 58.132 34.615 0.20 0.00 40.27 2.10
2912 4533 8.214364 CCTAAAGGGCAGATTTTATTCTAGTCT 58.786 37.037 0.00 0.00 0.00 3.24
2913 4534 9.267084 CTAAAGGGCAGATTTTATTCTAGTCTC 57.733 37.037 0.00 0.00 0.00 3.36
2916 4537 5.163195 GGGCAGATTTTATTCTAGTCTCCCA 60.163 44.000 0.00 0.00 31.88 4.37
2917 4538 5.760743 GGCAGATTTTATTCTAGTCTCCCAC 59.239 44.000 0.00 0.00 0.00 4.61
2918 4539 6.349300 GCAGATTTTATTCTAGTCTCCCACA 58.651 40.000 0.00 0.00 0.00 4.17
2920 4541 7.011857 GCAGATTTTATTCTAGTCTCCCACAAG 59.988 40.741 0.00 0.00 0.00 3.16
2931 4553 2.894126 TCTCCCACAAGTCTCTTCTCAC 59.106 50.000 0.00 0.00 0.00 3.51
2963 4585 2.123640 GCGGACTAGCCTCCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
2964 4586 2.197605 GCGGACTAGCCTCCTCCTC 61.198 68.421 0.00 0.00 0.00 3.71
2965 4587 1.894756 CGGACTAGCCTCCTCCTCG 60.895 68.421 0.00 0.00 0.00 4.63
2966 4588 1.227946 GGACTAGCCTCCTCCTCGT 59.772 63.158 0.00 0.00 0.00 4.18
2967 4589 0.820482 GGACTAGCCTCCTCCTCGTC 60.820 65.000 0.00 0.00 0.00 4.20
2968 4590 0.820482 GACTAGCCTCCTCCTCGTCC 60.820 65.000 0.00 0.00 0.00 4.79
2969 4591 1.283381 ACTAGCCTCCTCCTCGTCCT 61.283 60.000 0.00 0.00 0.00 3.85
2970 4592 0.536460 CTAGCCTCCTCCTCGTCCTC 60.536 65.000 0.00 0.00 0.00 3.71
2971 4593 1.997256 TAGCCTCCTCCTCGTCCTCC 61.997 65.000 0.00 0.00 0.00 4.30
2972 4594 3.011885 CCTCCTCCTCGTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
2973 4595 1.152839 CCTCCTCCTCGTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
2974 4596 1.641552 CCTCCTCCTCGTCCTCCTCT 61.642 65.000 0.00 0.00 0.00 3.69
2975 4597 1.133363 CTCCTCCTCGTCCTCCTCTA 58.867 60.000 0.00 0.00 0.00 2.43
2976 4598 0.838608 TCCTCCTCGTCCTCCTCTAC 59.161 60.000 0.00 0.00 0.00 2.59
2977 4599 0.179012 CCTCCTCGTCCTCCTCTACC 60.179 65.000 0.00 0.00 0.00 3.18
2978 4600 0.533308 CTCCTCGTCCTCCTCTACCG 60.533 65.000 0.00 0.00 0.00 4.02
2979 4601 1.526455 CCTCGTCCTCCTCTACCGG 60.526 68.421 0.00 0.00 0.00 5.28
2980 4602 2.124403 TCGTCCTCCTCTACCGGC 60.124 66.667 0.00 0.00 0.00 6.13
2981 4603 3.584052 CGTCCTCCTCTACCGGCG 61.584 72.222 0.00 0.00 0.00 6.46
3030 4653 2.105466 GCAGCAGCAGCAGTAGGAC 61.105 63.158 4.63 0.00 45.49 3.85
3031 4654 1.449246 CAGCAGCAGCAGTAGGACC 60.449 63.158 3.17 0.00 45.49 4.46
3032 4655 1.915266 AGCAGCAGCAGTAGGACCA 60.915 57.895 3.17 0.00 45.49 4.02
3033 4656 1.003355 GCAGCAGCAGTAGGACCAA 60.003 57.895 0.00 0.00 41.58 3.67
3034 4657 1.301677 GCAGCAGCAGTAGGACCAAC 61.302 60.000 0.00 0.00 41.58 3.77
3035 4658 0.322975 CAGCAGCAGTAGGACCAACT 59.677 55.000 0.00 0.00 0.00 3.16
3036 4659 0.322975 AGCAGCAGTAGGACCAACTG 59.677 55.000 0.00 0.00 45.80 3.16
3037 4660 0.035458 GCAGCAGTAGGACCAACTGT 59.965 55.000 5.25 0.00 45.01 3.55
3038 4661 1.800805 CAGCAGTAGGACCAACTGTG 58.199 55.000 5.25 0.00 45.01 3.66
3043 4666 3.679083 GCAGTAGGACCAACTGTGTATCC 60.679 52.174 5.25 0.00 45.01 2.59
3044 4667 3.513912 CAGTAGGACCAACTGTGTATCCA 59.486 47.826 0.00 0.00 39.61 3.41
3046 4669 2.902608 AGGACCAACTGTGTATCCAGA 58.097 47.619 0.00 0.00 36.30 3.86
3047 4670 2.567615 AGGACCAACTGTGTATCCAGAC 59.432 50.000 0.00 0.00 36.30 3.51
3067 4690 1.548719 CGGTCTGACTATTGGTGGTCA 59.451 52.381 7.85 0.00 42.66 4.02
3073 4696 6.408092 GGTCTGACTATTGGTGGTCATAATCA 60.408 42.308 7.85 0.00 43.67 2.57
3078 4701 7.339212 TGACTATTGGTGGTCATAATCAAAAGG 59.661 37.037 0.00 0.00 40.41 3.11
3079 4702 4.799564 TTGGTGGTCATAATCAAAAGGC 57.200 40.909 0.00 0.00 0.00 4.35
3080 4703 3.772387 TGGTGGTCATAATCAAAAGGCA 58.228 40.909 0.00 0.00 0.00 4.75
3082 4705 4.220382 TGGTGGTCATAATCAAAAGGCAAG 59.780 41.667 0.00 0.00 0.00 4.01
3085 4708 6.038356 GTGGTCATAATCAAAAGGCAAGATG 58.962 40.000 0.00 0.00 0.00 2.90
3098 4725 9.941325 CAAAAGGCAAGATGTCTATATCTATCT 57.059 33.333 0.00 0.00 36.42 1.98
3102 4729 9.184523 AGGCAAGATGTCTATATCTATCTACAC 57.815 37.037 0.00 0.00 36.42 2.90
3124 4751 7.364970 ACACAGGTTCAAATTTTTATCCGTAC 58.635 34.615 0.00 0.00 0.00 3.67
3156 4783 3.097614 GCAAGAGGGTCTACTGGTAAGA 58.902 50.000 0.00 0.00 0.00 2.10
3181 4808 5.172205 GCAAAAATAAATTTACCGCTCCCA 58.828 37.500 0.00 0.00 0.00 4.37
3195 4822 3.447229 CCGCTCCCATACCAAAAGAAAAT 59.553 43.478 0.00 0.00 0.00 1.82
3197 4824 4.082245 CGCTCCCATACCAAAAGAAAATGT 60.082 41.667 0.00 0.00 0.00 2.71
3198 4825 5.124776 CGCTCCCATACCAAAAGAAAATGTA 59.875 40.000 0.00 0.00 0.00 2.29
3199 4826 6.183360 CGCTCCCATACCAAAAGAAAATGTAT 60.183 38.462 0.00 0.00 0.00 2.29
3200 4827 6.980397 GCTCCCATACCAAAAGAAAATGTATG 59.020 38.462 0.00 0.00 38.83 2.39
3201 4828 7.363793 GCTCCCATACCAAAAGAAAATGTATGT 60.364 37.037 0.00 0.00 37.92 2.29
3202 4829 8.429237 TCCCATACCAAAAGAAAATGTATGTT 57.571 30.769 0.00 0.00 37.92 2.71
3203 4830 8.875168 TCCCATACCAAAAGAAAATGTATGTTT 58.125 29.630 0.00 0.00 37.92 2.83
3204 4831 8.934825 CCCATACCAAAAGAAAATGTATGTTTG 58.065 33.333 0.00 0.00 37.92 2.93
3205 4832 8.934825 CCATACCAAAAGAAAATGTATGTTTGG 58.065 33.333 10.60 10.60 46.71 3.28
3206 4833 8.934825 CATACCAAAAGAAAATGTATGTTTGGG 58.065 33.333 15.31 2.24 45.97 4.12
3207 4834 7.130681 ACCAAAAGAAAATGTATGTTTGGGA 57.869 32.000 15.31 0.00 45.97 4.37
3208 4835 7.569240 ACCAAAAGAAAATGTATGTTTGGGAA 58.431 30.769 15.31 0.00 45.97 3.97
3209 4836 7.714813 ACCAAAAGAAAATGTATGTTTGGGAAG 59.285 33.333 15.31 0.00 45.97 3.46
3210 4837 7.930865 CCAAAAGAAAATGTATGTTTGGGAAGA 59.069 33.333 5.29 0.00 40.73 2.87
3211 4838 9.323985 CAAAAGAAAATGTATGTTTGGGAAGAA 57.676 29.630 0.00 0.00 0.00 2.52
3213 4840 9.710900 AAAGAAAATGTATGTTTGGGAAGAATC 57.289 29.630 0.00 0.00 0.00 2.52
3214 4841 8.421249 AGAAAATGTATGTTTGGGAAGAATCA 57.579 30.769 0.00 0.00 0.00 2.57
3215 4842 8.869109 AGAAAATGTATGTTTGGGAAGAATCAA 58.131 29.630 0.00 0.00 0.00 2.57
3216 4843 9.143631 GAAAATGTATGTTTGGGAAGAATCAAG 57.856 33.333 0.00 0.00 0.00 3.02
3217 4844 8.421249 AAATGTATGTTTGGGAAGAATCAAGA 57.579 30.769 0.00 0.00 0.00 3.02
3218 4845 8.421249 AATGTATGTTTGGGAAGAATCAAGAA 57.579 30.769 0.00 0.00 0.00 2.52
3219 4846 7.452880 TGTATGTTTGGGAAGAATCAAGAAG 57.547 36.000 0.00 0.00 0.00 2.85
3220 4847 7.230747 TGTATGTTTGGGAAGAATCAAGAAGA 58.769 34.615 0.00 0.00 0.00 2.87
3221 4848 7.723616 TGTATGTTTGGGAAGAATCAAGAAGAA 59.276 33.333 0.00 0.00 0.00 2.52
3222 4849 7.787623 ATGTTTGGGAAGAATCAAGAAGAAT 57.212 32.000 0.00 0.00 0.00 2.40
3223 4850 8.884124 ATGTTTGGGAAGAATCAAGAAGAATA 57.116 30.769 0.00 0.00 0.00 1.75
3224 4851 8.704849 TGTTTGGGAAGAATCAAGAAGAATAA 57.295 30.769 0.00 0.00 0.00 1.40
3225 4852 8.576442 TGTTTGGGAAGAATCAAGAAGAATAAC 58.424 33.333 0.00 0.00 0.00 1.89
3226 4853 8.576442 GTTTGGGAAGAATCAAGAAGAATAACA 58.424 33.333 0.00 0.00 0.00 2.41
3227 4854 7.928307 TGGGAAGAATCAAGAAGAATAACAG 57.072 36.000 0.00 0.00 0.00 3.16
3228 4855 7.689299 TGGGAAGAATCAAGAAGAATAACAGA 58.311 34.615 0.00 0.00 0.00 3.41
3229 4856 7.607991 TGGGAAGAATCAAGAAGAATAACAGAC 59.392 37.037 0.00 0.00 0.00 3.51
3230 4857 7.826744 GGGAAGAATCAAGAAGAATAACAGACT 59.173 37.037 0.00 0.00 0.00 3.24
3231 4858 8.878769 GGAAGAATCAAGAAGAATAACAGACTC 58.121 37.037 0.00 0.00 0.00 3.36
3232 4859 9.429359 GAAGAATCAAGAAGAATAACAGACTCA 57.571 33.333 0.00 0.00 0.00 3.41
3233 4860 9.956640 AAGAATCAAGAAGAATAACAGACTCAT 57.043 29.630 0.00 0.00 0.00 2.90
3234 4861 9.381033 AGAATCAAGAAGAATAACAGACTCATG 57.619 33.333 0.00 0.00 0.00 3.07
3235 4862 9.160496 GAATCAAGAAGAATAACAGACTCATGT 57.840 33.333 0.00 0.00 33.96 3.21
3236 4863 7.895975 TCAAGAAGAATAACAGACTCATGTG 57.104 36.000 0.00 0.00 32.52 3.21
3237 4864 7.670364 TCAAGAAGAATAACAGACTCATGTGA 58.330 34.615 0.94 0.00 32.52 3.58
3238 4865 8.150296 TCAAGAAGAATAACAGACTCATGTGAA 58.850 33.333 0.94 0.00 32.52 3.18
3239 4866 8.777413 CAAGAAGAATAACAGACTCATGTGAAA 58.223 33.333 0.94 0.00 32.52 2.69
3240 4867 8.316640 AGAAGAATAACAGACTCATGTGAAAC 57.683 34.615 0.94 0.00 32.52 2.78
3241 4868 8.153550 AGAAGAATAACAGACTCATGTGAAACT 58.846 33.333 0.94 0.00 38.04 2.66
3242 4869 7.664082 AGAATAACAGACTCATGTGAAACTG 57.336 36.000 0.94 9.89 38.04 3.16
3243 4870 6.652481 AGAATAACAGACTCATGTGAAACTGG 59.348 38.462 17.58 7.27 38.04 4.00
3244 4871 4.422073 AACAGACTCATGTGAAACTGGA 57.578 40.909 17.58 0.00 38.04 3.86
3245 4872 4.630644 ACAGACTCATGTGAAACTGGAT 57.369 40.909 17.58 4.14 38.04 3.41
3246 4873 4.573900 ACAGACTCATGTGAAACTGGATC 58.426 43.478 17.58 0.00 38.04 3.36
3247 4874 4.040829 ACAGACTCATGTGAAACTGGATCA 59.959 41.667 17.58 0.00 38.04 2.92
3248 4875 4.999311 CAGACTCATGTGAAACTGGATCAA 59.001 41.667 0.94 0.00 38.04 2.57
3249 4876 5.471116 CAGACTCATGTGAAACTGGATCAAA 59.529 40.000 0.94 0.00 38.04 2.69
3250 4877 5.471456 AGACTCATGTGAAACTGGATCAAAC 59.529 40.000 0.94 0.00 38.04 2.93
3251 4878 5.380043 ACTCATGTGAAACTGGATCAAACT 58.620 37.500 0.94 0.00 38.04 2.66
3252 4879 5.471456 ACTCATGTGAAACTGGATCAAACTC 59.529 40.000 0.94 0.00 38.04 3.01
3253 4880 5.375773 TCATGTGAAACTGGATCAAACTCA 58.624 37.500 0.00 0.00 38.04 3.41
3254 4881 6.005823 TCATGTGAAACTGGATCAAACTCAT 58.994 36.000 0.00 0.00 38.04 2.90
3255 4882 6.491062 TCATGTGAAACTGGATCAAACTCATT 59.509 34.615 0.00 0.00 38.04 2.57
3256 4883 6.075762 TGTGAAACTGGATCAAACTCATTG 57.924 37.500 0.00 0.00 37.90 2.82
3257 4884 5.827267 TGTGAAACTGGATCAAACTCATTGA 59.173 36.000 0.00 0.00 45.14 2.57
3258 4885 6.320926 TGTGAAACTGGATCAAACTCATTGAA 59.679 34.615 0.00 0.00 44.58 2.69
3259 4886 7.681782 TGTGAAACTGGATCAAACTCATTGAAC 60.682 37.037 0.00 0.00 44.58 3.18
3269 4896 7.509141 TCAAACTCATTGAACTATTGCTGAA 57.491 32.000 0.00 0.00 44.94 3.02
3270 4897 7.362662 TCAAACTCATTGAACTATTGCTGAAC 58.637 34.615 0.00 0.00 44.94 3.18
3271 4898 5.886960 ACTCATTGAACTATTGCTGAACC 57.113 39.130 0.00 0.00 0.00 3.62
3272 4899 5.564550 ACTCATTGAACTATTGCTGAACCT 58.435 37.500 0.00 0.00 0.00 3.50
3273 4900 5.413833 ACTCATTGAACTATTGCTGAACCTG 59.586 40.000 0.00 0.00 0.00 4.00
3274 4901 5.316167 TCATTGAACTATTGCTGAACCTGT 58.684 37.500 0.00 0.00 0.00 4.00
3275 4902 5.412594 TCATTGAACTATTGCTGAACCTGTC 59.587 40.000 0.00 0.00 0.00 3.51
3276 4903 3.325870 TGAACTATTGCTGAACCTGTCG 58.674 45.455 0.00 0.00 0.00 4.35
3277 4904 3.006430 TGAACTATTGCTGAACCTGTCGA 59.994 43.478 0.00 0.00 0.00 4.20
3278 4905 3.895232 ACTATTGCTGAACCTGTCGAT 57.105 42.857 0.00 0.00 0.00 3.59
3279 4906 4.207891 ACTATTGCTGAACCTGTCGATT 57.792 40.909 0.00 0.00 0.00 3.34
3280 4907 4.579869 ACTATTGCTGAACCTGTCGATTT 58.420 39.130 0.00 0.00 0.00 2.17
3281 4908 5.003804 ACTATTGCTGAACCTGTCGATTTT 58.996 37.500 0.00 0.00 0.00 1.82
3282 4909 4.853924 ATTGCTGAACCTGTCGATTTTT 57.146 36.364 0.00 0.00 0.00 1.94
3299 4926 3.464720 TTTTTGCAGGTGGGGATATCA 57.535 42.857 4.83 0.00 0.00 2.15
3300 4927 3.686227 TTTTGCAGGTGGGGATATCAT 57.314 42.857 4.83 0.00 0.00 2.45
3301 4928 2.957402 TTGCAGGTGGGGATATCATC 57.043 50.000 4.83 0.00 0.00 2.92
3302 4929 1.818419 TGCAGGTGGGGATATCATCA 58.182 50.000 4.83 0.00 0.00 3.07
3303 4930 1.701292 TGCAGGTGGGGATATCATCAG 59.299 52.381 4.83 0.00 0.00 2.90
3304 4931 1.004044 GCAGGTGGGGATATCATCAGG 59.996 57.143 4.83 0.00 0.00 3.86
3305 4932 2.624495 CAGGTGGGGATATCATCAGGA 58.376 52.381 4.83 0.00 0.00 3.86
3306 4933 2.570752 CAGGTGGGGATATCATCAGGAG 59.429 54.545 4.83 0.00 0.00 3.69
3307 4934 1.280421 GGTGGGGATATCATCAGGAGC 59.720 57.143 4.83 0.00 0.00 4.70
3308 4935 1.280421 GTGGGGATATCATCAGGAGCC 59.720 57.143 4.83 0.00 0.00 4.70
3309 4936 1.132430 TGGGGATATCATCAGGAGCCA 60.132 52.381 4.83 0.00 0.00 4.75
3310 4937 1.988107 GGGGATATCATCAGGAGCCAA 59.012 52.381 4.83 0.00 0.00 4.52
3311 4938 2.290577 GGGGATATCATCAGGAGCCAAC 60.291 54.545 4.83 0.00 0.00 3.77
3312 4939 2.373169 GGGATATCATCAGGAGCCAACA 59.627 50.000 4.83 0.00 0.00 3.33
3313 4940 3.406764 GGATATCATCAGGAGCCAACAC 58.593 50.000 4.83 0.00 0.00 3.32
3314 4941 3.181451 GGATATCATCAGGAGCCAACACA 60.181 47.826 4.83 0.00 0.00 3.72
3315 4942 2.414994 ATCATCAGGAGCCAACACAG 57.585 50.000 0.00 0.00 0.00 3.66
3316 4943 1.059098 TCATCAGGAGCCAACACAGT 58.941 50.000 0.00 0.00 0.00 3.55
3317 4944 1.162698 CATCAGGAGCCAACACAGTG 58.837 55.000 0.00 0.00 0.00 3.66
3318 4945 0.037303 ATCAGGAGCCAACACAGTGG 59.963 55.000 5.31 0.00 42.05 4.00
3324 4951 2.203139 CCAACACAGTGGCCACGA 60.203 61.111 29.68 0.00 36.20 4.35
3325 4952 1.600636 CCAACACAGTGGCCACGAT 60.601 57.895 29.68 19.14 36.20 3.73
3326 4953 1.172180 CCAACACAGTGGCCACGATT 61.172 55.000 29.68 18.76 36.20 3.34
3327 4954 0.040157 CAACACAGTGGCCACGATTG 60.040 55.000 29.68 26.67 36.20 2.67
3328 4955 0.179032 AACACAGTGGCCACGATTGA 60.179 50.000 29.88 0.00 36.20 2.57
3329 4956 0.603707 ACACAGTGGCCACGATTGAG 60.604 55.000 29.88 23.37 36.20 3.02
3330 4957 1.672356 ACAGTGGCCACGATTGAGC 60.672 57.895 29.68 3.65 36.20 4.26
3331 4958 1.376424 CAGTGGCCACGATTGAGCT 60.376 57.895 29.68 7.25 36.20 4.09
3332 4959 1.078848 AGTGGCCACGATTGAGCTC 60.079 57.895 29.68 6.82 36.20 4.09
3333 4960 1.375908 GTGGCCACGATTGAGCTCA 60.376 57.895 22.49 13.74 0.00 4.26
3334 4961 1.375908 TGGCCACGATTGAGCTCAC 60.376 57.895 18.03 4.92 0.00 3.51
3335 4962 1.375908 GGCCACGATTGAGCTCACA 60.376 57.895 18.03 8.50 0.00 3.58
3336 4963 0.955428 GGCCACGATTGAGCTCACAA 60.955 55.000 18.03 2.52 0.00 3.33
3337 4964 0.874390 GCCACGATTGAGCTCACAAA 59.126 50.000 18.03 1.61 33.44 2.83
3338 4965 1.135859 GCCACGATTGAGCTCACAAAG 60.136 52.381 18.03 10.80 33.44 2.77
3339 4966 2.146342 CCACGATTGAGCTCACAAAGT 58.854 47.619 18.03 11.47 33.44 2.66
3340 4967 2.096069 CCACGATTGAGCTCACAAAGTG 60.096 50.000 18.03 21.46 39.58 3.16
3341 4968 2.096069 CACGATTGAGCTCACAAAGTGG 60.096 50.000 18.03 4.33 38.03 4.00
3342 4969 1.135859 CGATTGAGCTCACAAAGTGGC 60.136 52.381 18.03 0.00 33.87 5.01
3343 4970 1.200948 GATTGAGCTCACAAAGTGGCC 59.799 52.381 18.03 0.00 32.82 5.36
3344 4971 0.106769 TTGAGCTCACAAAGTGGCCA 60.107 50.000 18.03 0.00 32.82 5.36
3345 4972 0.106769 TGAGCTCACAAAGTGGCCAA 60.107 50.000 13.74 0.00 32.82 4.52
3346 4973 1.032014 GAGCTCACAAAGTGGCCAAA 58.968 50.000 7.24 0.00 32.82 3.28
3347 4974 1.408702 GAGCTCACAAAGTGGCCAAAA 59.591 47.619 7.24 0.00 32.82 2.44
3348 4975 1.830477 AGCTCACAAAGTGGCCAAAAA 59.170 42.857 7.24 0.00 32.82 1.94
3390 5017 5.265989 TGGTACGCCATACATATCCATCTA 58.734 41.667 0.00 0.00 40.46 1.98
3444 5074 8.494347 CATGAAGAAGTTTCAGAAGAGTAACTG 58.506 37.037 0.00 0.00 31.64 3.16
3446 5076 8.258007 TGAAGAAGTTTCAGAAGAGTAACTGAA 58.742 33.333 0.00 0.00 46.70 3.02
3455 5085 4.757149 AGAAGAGTAACTGAACAATGCACC 59.243 41.667 0.00 0.00 0.00 5.01
3468 5098 3.181487 ACAATGCACCTGTTGTTTCAGAC 60.181 43.478 0.00 0.00 35.13 3.51
3508 5138 2.550101 GCGGTACCTATCGTCGGCT 61.550 63.158 10.90 0.00 31.21 5.52
3513 5143 3.080319 GGTACCTATCGTCGGCTCTATT 58.920 50.000 4.06 0.00 0.00 1.73
3517 5147 2.162608 CCTATCGTCGGCTCTATTGGAG 59.837 54.545 0.00 0.00 44.49 3.86
3519 5149 1.107538 TCGTCGGCTCTATTGGAGGG 61.108 60.000 0.00 0.00 42.08 4.30
3521 5151 0.831307 GTCGGCTCTATTGGAGGGTT 59.169 55.000 0.00 0.00 42.08 4.11
3530 5160 2.907458 ATTGGAGGGTTTGAGGAAGG 57.093 50.000 0.00 0.00 0.00 3.46
3533 5163 1.705186 TGGAGGGTTTGAGGAAGGAAG 59.295 52.381 0.00 0.00 0.00 3.46
3547 5177 0.251474 AGGAAGCTGAGGCAATGCAA 60.251 50.000 7.79 0.00 41.70 4.08
3562 5192 4.828409 CAACCAGTGCCAGTGGAT 57.172 55.556 25.20 10.80 41.28 3.41
3569 5199 3.329520 ACCAGTGCCAGTGGATTAACTTA 59.670 43.478 25.20 0.00 41.28 2.24
3573 5203 5.122396 CAGTGCCAGTGGATTAACTTAGAAC 59.878 44.000 15.20 0.00 0.00 3.01
3574 5204 4.395231 GTGCCAGTGGATTAACTTAGAACC 59.605 45.833 15.20 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.054361 TCCCAAGAACCCTAGATTTCTGC 60.054 47.826 6.58 0.00 32.26 4.26
2 3 4.384647 CCTCCCAAGAACCCTAGATTTCTG 60.385 50.000 6.58 2.89 32.26 3.02
3 4 3.783082 CCTCCCAAGAACCCTAGATTTCT 59.217 47.826 0.00 0.00 33.32 2.52
6 7 1.847088 GCCTCCCAAGAACCCTAGATT 59.153 52.381 0.00 0.00 0.00 2.40
7 8 1.512735 GCCTCCCAAGAACCCTAGAT 58.487 55.000 0.00 0.00 0.00 1.98
9 10 1.522569 CGCCTCCCAAGAACCCTAG 59.477 63.158 0.00 0.00 0.00 3.02
10 11 1.993391 CCGCCTCCCAAGAACCCTA 60.993 63.158 0.00 0.00 0.00 3.53
11 12 3.330720 CCGCCTCCCAAGAACCCT 61.331 66.667 0.00 0.00 0.00 4.34
27 28 4.228567 GCTCTGGACCTAGCCGCC 62.229 72.222 7.89 0.00 32.40 6.13
30 31 1.486211 TGTTAGCTCTGGACCTAGCC 58.514 55.000 13.79 2.70 39.64 3.93
31 32 3.462021 CAATGTTAGCTCTGGACCTAGC 58.538 50.000 10.47 10.47 39.08 3.42
35 36 3.567478 ATCCAATGTTAGCTCTGGACC 57.433 47.619 0.00 0.00 40.69 4.46
38 39 7.630242 TTAGAAAATCCAATGTTAGCTCTGG 57.370 36.000 0.00 0.00 0.00 3.86
43 44 9.173939 CGATTGATTAGAAAATCCAATGTTAGC 57.826 33.333 0.00 0.00 40.78 3.09
46 47 9.927668 AAACGATTGATTAGAAAATCCAATGTT 57.072 25.926 0.00 0.00 40.78 2.71
145 1534 9.529325 CTTGAACGTAGGACATATTTTCTATGA 57.471 33.333 3.78 0.00 0.00 2.15
158 1547 2.726832 AGTGCTCTTGAACGTAGGAC 57.273 50.000 0.00 0.00 32.33 3.85
176 1565 4.010349 GGTGAGAGGGACCATGTTAAAAG 58.990 47.826 0.00 0.00 33.25 2.27
394 1787 4.524328 GTCTTCCATTCTTTTGTCCACCAT 59.476 41.667 0.00 0.00 0.00 3.55
536 1935 8.954950 AATTTATTGGATGTGTGTTTGTTTGA 57.045 26.923 0.00 0.00 0.00 2.69
776 2216 9.740239 GAGAACGTGTATGTATTGGATTAAGTA 57.260 33.333 0.00 0.00 0.00 2.24
797 2237 1.869767 GCACGATGGATGGATGAGAAC 59.130 52.381 0.00 0.00 0.00 3.01
843 2299 7.537991 GCGCGTATAGAGTTCAATATTAGTCTT 59.462 37.037 8.43 0.00 0.00 3.01
856 2315 2.225068 ATTGCTGCGCGTATAGAGTT 57.775 45.000 8.43 0.00 0.00 3.01
986 2451 4.873129 CCATGTCGTCGCCCGGAG 62.873 72.222 0.73 0.00 37.11 4.63
1299 2801 3.374984 GGAGTAGGTTCCTTAGATGGGGA 60.375 52.174 0.00 0.00 34.27 4.81
1369 2871 0.888619 AAGCTCATGACTTCGTCCGA 59.111 50.000 0.00 0.00 0.00 4.55
1377 2879 3.920231 TCCATGCTAAAGCTCATGACT 57.080 42.857 13.26 0.00 41.82 3.41
1422 2924 1.888215 CAGTCCAGAACAGCACACAT 58.112 50.000 0.00 0.00 0.00 3.21
1509 3011 3.407698 CATGGCGCCATACATACCTTTA 58.592 45.455 39.94 9.43 34.91 1.85
1588 3102 0.744414 ACGCCCAGCATCACACATAC 60.744 55.000 0.00 0.00 0.00 2.39
1600 3114 2.749076 TCAGATCAATGAAAACGCCCAG 59.251 45.455 0.00 0.00 0.00 4.45
1865 3379 1.325355 CCGATGGTGTAGACGGGTAT 58.675 55.000 0.00 0.00 41.41 2.73
1867 3381 2.718073 GCCGATGGTGTAGACGGGT 61.718 63.158 0.00 0.00 44.61 5.28
1895 3409 0.610687 ACCAGCTGCTCAGTAAGGAC 59.389 55.000 8.66 0.00 0.00 3.85
2103 3623 2.954989 CTCATGATCCAGAGGAAGTCGA 59.045 50.000 0.00 0.00 34.34 4.20
2120 3640 2.236395 CCTTTACCAGGTCGTTCCTCAT 59.764 50.000 0.00 0.00 46.24 2.90
2173 3693 1.304713 CCTGCCCTTGGTTGCATCT 60.305 57.895 0.00 0.00 36.79 2.90
2176 3696 2.521465 CACCTGCCCTTGGTTGCA 60.521 61.111 0.00 0.00 35.28 4.08
2179 3699 1.456287 GAGACACCTGCCCTTGGTT 59.544 57.895 0.00 0.00 35.28 3.67
2194 3714 2.659016 CACCAGCTCGCAAGGAGA 59.341 61.111 7.30 0.00 46.23 3.71
2278 3798 0.179073 CACTAAGGCCCTCCATCGTG 60.179 60.000 0.00 0.00 33.74 4.35
2280 3800 1.227674 GCACTAAGGCCCTCCATCG 60.228 63.158 0.00 0.00 33.74 3.84
2422 3942 1.424638 CCATCACCTCCCGTATCCTT 58.575 55.000 0.00 0.00 0.00 3.36
2533 4053 1.729586 TACTCTCAAGGTTGGCCAGT 58.270 50.000 5.11 0.00 37.19 4.00
2534 4054 2.026822 ACATACTCTCAAGGTTGGCCAG 60.027 50.000 5.11 0.00 37.19 4.85
2588 4113 7.230108 ACATGCATCTCAAATTCCGAATTCTAT 59.770 33.333 6.82 0.00 0.00 1.98
2627 4152 4.082845 TCAAATTCGCATTTCCCAACCTA 58.917 39.130 0.00 0.00 29.41 3.08
2664 4189 3.823873 ACGCCTTATTGGATCAACAAACA 59.176 39.130 0.00 0.00 38.35 2.83
2665 4190 4.165779 CACGCCTTATTGGATCAACAAAC 58.834 43.478 0.00 0.00 38.35 2.93
2666 4191 3.823873 ACACGCCTTATTGGATCAACAAA 59.176 39.130 0.00 0.00 38.35 2.83
2667 4192 3.417101 ACACGCCTTATTGGATCAACAA 58.583 40.909 0.00 0.00 38.35 2.83
2708 4235 3.244387 GCCACAACCCAACCAAACAATAT 60.244 43.478 0.00 0.00 0.00 1.28
2709 4236 2.103263 GCCACAACCCAACCAAACAATA 59.897 45.455 0.00 0.00 0.00 1.90
2745 4272 5.950758 ATTCAAAACACATTGCATTGCAT 57.049 30.435 12.95 0.00 38.76 3.96
2746 4273 5.752892 AATTCAAAACACATTGCATTGCA 57.247 30.435 7.38 7.38 36.47 4.08
2747 4274 7.519843 TCATAATTCAAAACACATTGCATTGC 58.480 30.769 8.48 0.46 30.60 3.56
2750 4277 9.221933 ACAATCATAATTCAAAACACATTGCAT 57.778 25.926 0.00 0.00 0.00 3.96
2751 4278 8.496751 CACAATCATAATTCAAAACACATTGCA 58.503 29.630 0.00 0.00 0.00 4.08
2752 4279 8.710551 TCACAATCATAATTCAAAACACATTGC 58.289 29.630 0.00 0.00 0.00 3.56
2755 4282 9.630098 GTCTCACAATCATAATTCAAAACACAT 57.370 29.630 0.00 0.00 0.00 3.21
2756 4283 8.849168 AGTCTCACAATCATAATTCAAAACACA 58.151 29.630 0.00 0.00 0.00 3.72
2758 4285 9.681692 CAAGTCTCACAATCATAATTCAAAACA 57.318 29.630 0.00 0.00 0.00 2.83
2808 4381 5.479124 TTCCTGAAAGAAGGTACACTACC 57.521 43.478 0.00 0.00 43.22 3.18
2811 4384 5.589050 GTGTTTTCCTGAAAGAAGGTACACT 59.411 40.000 12.41 0.00 39.42 3.55
2834 4433 1.202710 TGCCACCAGAACACATTACGT 60.203 47.619 0.00 0.00 0.00 3.57
2835 4434 1.464608 CTGCCACCAGAACACATTACG 59.535 52.381 0.00 0.00 41.77 3.18
2870 4469 6.239232 GCCCTTTAGGTGAGATCGTATTTAGA 60.239 42.308 0.00 0.00 38.26 2.10
2871 4470 5.927115 GCCCTTTAGGTGAGATCGTATTTAG 59.073 44.000 0.00 0.00 38.26 1.85
2872 4471 5.364446 TGCCCTTTAGGTGAGATCGTATTTA 59.636 40.000 0.00 0.00 38.26 1.40
2873 4472 4.163458 TGCCCTTTAGGTGAGATCGTATTT 59.837 41.667 0.00 0.00 38.26 1.40
2888 4509 8.211629 GGAGACTAGAATAAAATCTGCCCTTTA 58.788 37.037 0.00 0.00 0.00 1.85
2901 4522 6.494952 AGAGACTTGTGGGAGACTAGAATAA 58.505 40.000 0.00 0.00 32.32 1.40
2908 4529 3.161866 GAGAAGAGACTTGTGGGAGACT 58.838 50.000 0.00 0.00 0.00 3.24
2912 4533 1.613925 CGTGAGAAGAGACTTGTGGGA 59.386 52.381 0.00 0.00 0.00 4.37
2913 4534 1.337260 CCGTGAGAAGAGACTTGTGGG 60.337 57.143 0.00 0.00 0.00 4.61
2916 4537 1.889829 CTCCCGTGAGAAGAGACTTGT 59.110 52.381 0.00 0.00 41.42 3.16
2917 4538 1.403514 GCTCCCGTGAGAAGAGACTTG 60.404 57.143 0.00 0.00 41.42 3.16
2918 4539 0.892063 GCTCCCGTGAGAAGAGACTT 59.108 55.000 0.00 0.00 41.42 3.01
2920 4541 1.251527 TGGCTCCCGTGAGAAGAGAC 61.252 60.000 0.00 0.00 41.42 3.36
2963 4585 2.124403 GCCGGTAGAGGAGGACGA 60.124 66.667 1.90 0.00 0.00 4.20
2964 4586 3.584052 CGCCGGTAGAGGAGGACG 61.584 72.222 1.90 0.00 0.00 4.79
2965 4587 3.902086 GCGCCGGTAGAGGAGGAC 61.902 72.222 1.90 0.00 0.00 3.85
2987 4609 1.596895 GAGAAGGAAGAGACGCCGGT 61.597 60.000 1.90 0.00 0.00 5.28
2991 4613 1.518302 GGGGAGAAGGAAGAGACGC 59.482 63.158 0.00 0.00 0.00 5.19
3025 4648 3.767673 GTCTGGATACACAGTTGGTCCTA 59.232 47.826 0.00 0.00 46.17 2.94
3027 4650 2.674177 CGTCTGGATACACAGTTGGTCC 60.674 54.545 0.00 0.00 46.17 4.46
3028 4651 2.607187 CGTCTGGATACACAGTTGGTC 58.393 52.381 0.00 0.00 46.17 4.02
3030 4653 1.275291 ACCGTCTGGATACACAGTTGG 59.725 52.381 0.00 0.00 46.17 3.77
3031 4654 2.231478 AGACCGTCTGGATACACAGTTG 59.769 50.000 0.00 0.00 46.17 3.16
3032 4655 2.231478 CAGACCGTCTGGATACACAGTT 59.769 50.000 19.29 0.00 46.17 3.16
3033 4656 1.819288 CAGACCGTCTGGATACACAGT 59.181 52.381 19.29 0.00 46.17 3.55
3034 4657 2.092323 TCAGACCGTCTGGATACACAG 58.908 52.381 25.03 0.08 44.39 3.66
3035 4658 1.816835 GTCAGACCGTCTGGATACACA 59.183 52.381 25.03 4.44 44.39 3.72
3036 4659 2.093106 AGTCAGACCGTCTGGATACAC 58.907 52.381 25.03 16.37 44.39 2.90
3037 4660 2.509166 AGTCAGACCGTCTGGATACA 57.491 50.000 25.03 5.81 44.39 2.29
3038 4661 4.261656 CCAATAGTCAGACCGTCTGGATAC 60.262 50.000 25.03 17.00 44.39 2.24
3043 4666 2.417379 CCACCAATAGTCAGACCGTCTG 60.417 54.545 20.73 20.73 45.59 3.51
3044 4667 1.825474 CCACCAATAGTCAGACCGTCT 59.175 52.381 0.00 0.00 0.00 4.18
3046 4669 1.549170 GACCACCAATAGTCAGACCGT 59.451 52.381 0.00 0.00 33.08 4.83
3047 4670 1.548719 TGACCACCAATAGTCAGACCG 59.451 52.381 0.00 0.00 38.07 4.79
3055 4678 6.096705 TGCCTTTTGATTATGACCACCAATAG 59.903 38.462 0.00 0.00 0.00 1.73
3059 4682 3.772387 TGCCTTTTGATTATGACCACCA 58.228 40.909 0.00 0.00 0.00 4.17
3098 4725 7.513371 ACGGATAAAAATTTGAACCTGTGTA 57.487 32.000 0.00 0.00 0.00 2.90
3102 4729 7.590279 ACTGTACGGATAAAAATTTGAACCTG 58.410 34.615 9.17 0.00 0.00 4.00
3107 4734 6.016192 TGCCAACTGTACGGATAAAAATTTGA 60.016 34.615 9.17 0.00 0.00 2.69
3156 4783 5.815222 GGGAGCGGTAAATTTATTTTTGCAT 59.185 36.000 0.31 0.00 0.00 3.96
3181 4808 8.875168 TCCCAAACATACATTTTCTTTTGGTAT 58.125 29.630 9.43 0.00 40.86 2.73
3195 4822 7.230747 TCTTCTTGATTCTTCCCAAACATACA 58.769 34.615 0.00 0.00 0.00 2.29
3197 4824 8.884124 ATTCTTCTTGATTCTTCCCAAACATA 57.116 30.769 0.00 0.00 0.00 2.29
3198 4825 7.787623 ATTCTTCTTGATTCTTCCCAAACAT 57.212 32.000 0.00 0.00 0.00 2.71
3199 4826 8.576442 GTTATTCTTCTTGATTCTTCCCAAACA 58.424 33.333 0.00 0.00 0.00 2.83
3200 4827 8.576442 TGTTATTCTTCTTGATTCTTCCCAAAC 58.424 33.333 0.00 0.00 0.00 2.93
3201 4828 8.704849 TGTTATTCTTCTTGATTCTTCCCAAA 57.295 30.769 0.00 0.00 0.00 3.28
3202 4829 8.163408 TCTGTTATTCTTCTTGATTCTTCCCAA 58.837 33.333 0.00 0.00 0.00 4.12
3203 4830 7.607991 GTCTGTTATTCTTCTTGATTCTTCCCA 59.392 37.037 0.00 0.00 0.00 4.37
3204 4831 7.826744 AGTCTGTTATTCTTCTTGATTCTTCCC 59.173 37.037 0.00 0.00 0.00 3.97
3205 4832 8.785329 AGTCTGTTATTCTTCTTGATTCTTCC 57.215 34.615 0.00 0.00 0.00 3.46
3206 4833 9.429359 TGAGTCTGTTATTCTTCTTGATTCTTC 57.571 33.333 0.00 0.00 0.00 2.87
3207 4834 9.956640 ATGAGTCTGTTATTCTTCTTGATTCTT 57.043 29.630 0.00 0.00 0.00 2.52
3208 4835 9.381033 CATGAGTCTGTTATTCTTCTTGATTCT 57.619 33.333 0.00 0.00 0.00 2.40
3209 4836 9.160496 ACATGAGTCTGTTATTCTTCTTGATTC 57.840 33.333 0.00 0.00 0.00 2.52
3210 4837 8.944029 CACATGAGTCTGTTATTCTTCTTGATT 58.056 33.333 0.00 0.00 0.00 2.57
3211 4838 8.316946 TCACATGAGTCTGTTATTCTTCTTGAT 58.683 33.333 0.00 0.00 0.00 2.57
3212 4839 7.670364 TCACATGAGTCTGTTATTCTTCTTGA 58.330 34.615 0.00 0.00 0.00 3.02
3213 4840 7.895975 TCACATGAGTCTGTTATTCTTCTTG 57.104 36.000 0.00 0.00 0.00 3.02
3214 4841 8.778358 GTTTCACATGAGTCTGTTATTCTTCTT 58.222 33.333 0.00 0.00 0.00 2.52
3215 4842 8.153550 AGTTTCACATGAGTCTGTTATTCTTCT 58.846 33.333 0.00 0.00 0.00 2.85
3216 4843 8.226448 CAGTTTCACATGAGTCTGTTATTCTTC 58.774 37.037 0.00 0.00 0.00 2.87
3217 4844 7.173907 CCAGTTTCACATGAGTCTGTTATTCTT 59.826 37.037 0.00 0.00 0.00 2.52
3218 4845 6.652481 CCAGTTTCACATGAGTCTGTTATTCT 59.348 38.462 0.00 0.00 0.00 2.40
3219 4846 6.650807 TCCAGTTTCACATGAGTCTGTTATTC 59.349 38.462 0.00 0.00 0.00 1.75
3220 4847 6.533730 TCCAGTTTCACATGAGTCTGTTATT 58.466 36.000 0.00 0.00 0.00 1.40
3221 4848 6.114187 TCCAGTTTCACATGAGTCTGTTAT 57.886 37.500 0.00 0.00 0.00 1.89
3222 4849 5.545063 TCCAGTTTCACATGAGTCTGTTA 57.455 39.130 0.00 0.00 0.00 2.41
3223 4850 4.422073 TCCAGTTTCACATGAGTCTGTT 57.578 40.909 0.00 0.00 0.00 3.16
3224 4851 4.040829 TGATCCAGTTTCACATGAGTCTGT 59.959 41.667 0.00 0.00 0.00 3.41
3225 4852 4.572909 TGATCCAGTTTCACATGAGTCTG 58.427 43.478 0.00 3.09 0.00 3.51
3226 4853 4.897509 TGATCCAGTTTCACATGAGTCT 57.102 40.909 0.00 0.00 0.00 3.24
3227 4854 5.471456 AGTTTGATCCAGTTTCACATGAGTC 59.529 40.000 0.00 0.00 0.00 3.36
3228 4855 5.380043 AGTTTGATCCAGTTTCACATGAGT 58.620 37.500 0.00 0.00 0.00 3.41
3229 4856 5.471116 TGAGTTTGATCCAGTTTCACATGAG 59.529 40.000 0.00 0.00 0.00 2.90
3230 4857 5.375773 TGAGTTTGATCCAGTTTCACATGA 58.624 37.500 0.00 0.00 0.00 3.07
3231 4858 5.694231 TGAGTTTGATCCAGTTTCACATG 57.306 39.130 0.00 0.00 0.00 3.21
3232 4859 6.491062 TCAATGAGTTTGATCCAGTTTCACAT 59.509 34.615 0.00 0.00 39.44 3.21
3233 4860 5.827267 TCAATGAGTTTGATCCAGTTTCACA 59.173 36.000 0.00 0.00 39.44 3.58
3234 4861 6.317789 TCAATGAGTTTGATCCAGTTTCAC 57.682 37.500 0.00 0.00 39.44 3.18
3235 4862 6.547141 AGTTCAATGAGTTTGATCCAGTTTCA 59.453 34.615 0.00 0.00 43.73 2.69
3236 4863 6.974965 AGTTCAATGAGTTTGATCCAGTTTC 58.025 36.000 0.00 0.00 43.73 2.78
3237 4864 6.966534 AGTTCAATGAGTTTGATCCAGTTT 57.033 33.333 0.00 0.00 43.73 2.66
3238 4865 8.517878 CAATAGTTCAATGAGTTTGATCCAGTT 58.482 33.333 0.00 0.00 43.73 3.16
3239 4866 7.362401 GCAATAGTTCAATGAGTTTGATCCAGT 60.362 37.037 0.00 0.00 43.73 4.00
3240 4867 6.971184 GCAATAGTTCAATGAGTTTGATCCAG 59.029 38.462 0.00 0.00 43.73 3.86
3241 4868 6.660521 AGCAATAGTTCAATGAGTTTGATCCA 59.339 34.615 0.00 0.00 43.73 3.41
3242 4869 6.971184 CAGCAATAGTTCAATGAGTTTGATCC 59.029 38.462 0.00 0.00 43.73 3.36
3243 4870 7.755591 TCAGCAATAGTTCAATGAGTTTGATC 58.244 34.615 0.00 0.00 43.73 2.92
3244 4871 7.692460 TCAGCAATAGTTCAATGAGTTTGAT 57.308 32.000 0.00 0.00 43.73 2.57
3245 4872 7.362662 GTTCAGCAATAGTTCAATGAGTTTGA 58.637 34.615 0.00 0.00 42.62 2.69
3246 4873 6.583806 GGTTCAGCAATAGTTCAATGAGTTTG 59.416 38.462 0.00 0.00 36.61 2.93
3247 4874 6.491403 AGGTTCAGCAATAGTTCAATGAGTTT 59.509 34.615 0.00 0.00 0.00 2.66
3248 4875 6.006449 AGGTTCAGCAATAGTTCAATGAGTT 58.994 36.000 0.00 0.00 0.00 3.01
3249 4876 5.413833 CAGGTTCAGCAATAGTTCAATGAGT 59.586 40.000 0.00 0.00 0.00 3.41
3250 4877 5.413833 ACAGGTTCAGCAATAGTTCAATGAG 59.586 40.000 0.00 0.00 0.00 2.90
3251 4878 5.316167 ACAGGTTCAGCAATAGTTCAATGA 58.684 37.500 0.00 0.00 0.00 2.57
3252 4879 5.633830 ACAGGTTCAGCAATAGTTCAATG 57.366 39.130 0.00 0.00 0.00 2.82
3253 4880 4.393062 CGACAGGTTCAGCAATAGTTCAAT 59.607 41.667 0.00 0.00 0.00 2.57
3254 4881 3.745975 CGACAGGTTCAGCAATAGTTCAA 59.254 43.478 0.00 0.00 0.00 2.69
3255 4882 3.006430 TCGACAGGTTCAGCAATAGTTCA 59.994 43.478 0.00 0.00 0.00 3.18
3256 4883 3.585862 TCGACAGGTTCAGCAATAGTTC 58.414 45.455 0.00 0.00 0.00 3.01
3257 4884 3.678056 TCGACAGGTTCAGCAATAGTT 57.322 42.857 0.00 0.00 0.00 2.24
3258 4885 3.895232 ATCGACAGGTTCAGCAATAGT 57.105 42.857 0.00 0.00 0.00 2.12
3259 4886 5.551760 AAAATCGACAGGTTCAGCAATAG 57.448 39.130 0.00 0.00 0.00 1.73
3260 4887 5.957842 AAAAATCGACAGGTTCAGCAATA 57.042 34.783 0.00 0.00 0.00 1.90
3261 4888 4.853924 AAAAATCGACAGGTTCAGCAAT 57.146 36.364 0.00 0.00 0.00 3.56
3279 4906 3.464720 TGATATCCCCACCTGCAAAAA 57.535 42.857 0.00 0.00 0.00 1.94
3280 4907 3.053019 TGATGATATCCCCACCTGCAAAA 60.053 43.478 0.00 0.00 0.00 2.44
3281 4908 2.513317 TGATGATATCCCCACCTGCAAA 59.487 45.455 0.00 0.00 0.00 3.68
3282 4909 2.107031 CTGATGATATCCCCACCTGCAA 59.893 50.000 0.00 0.00 0.00 4.08
3283 4910 1.701292 CTGATGATATCCCCACCTGCA 59.299 52.381 0.00 0.00 0.00 4.41
3284 4911 1.004044 CCTGATGATATCCCCACCTGC 59.996 57.143 0.00 0.00 0.00 4.85
3285 4912 2.570752 CTCCTGATGATATCCCCACCTG 59.429 54.545 0.00 0.00 0.00 4.00
3286 4913 2.913203 CTCCTGATGATATCCCCACCT 58.087 52.381 0.00 0.00 0.00 4.00
3287 4914 1.280421 GCTCCTGATGATATCCCCACC 59.720 57.143 0.00 0.00 0.00 4.61
3288 4915 1.280421 GGCTCCTGATGATATCCCCAC 59.720 57.143 0.00 0.00 0.00 4.61
3289 4916 1.132430 TGGCTCCTGATGATATCCCCA 60.132 52.381 0.00 0.00 0.00 4.96
3290 4917 1.661463 TGGCTCCTGATGATATCCCC 58.339 55.000 0.00 0.00 0.00 4.81
3291 4918 2.373169 TGTTGGCTCCTGATGATATCCC 59.627 50.000 0.00 0.00 0.00 3.85
3292 4919 3.181451 TGTGTTGGCTCCTGATGATATCC 60.181 47.826 0.00 0.00 0.00 2.59
3293 4920 4.063689 CTGTGTTGGCTCCTGATGATATC 58.936 47.826 0.00 0.00 0.00 1.63
3294 4921 3.457380 ACTGTGTTGGCTCCTGATGATAT 59.543 43.478 0.00 0.00 0.00 1.63
3295 4922 2.840038 ACTGTGTTGGCTCCTGATGATA 59.160 45.455 0.00 0.00 0.00 2.15
3296 4923 1.632409 ACTGTGTTGGCTCCTGATGAT 59.368 47.619 0.00 0.00 0.00 2.45
3297 4924 1.059098 ACTGTGTTGGCTCCTGATGA 58.941 50.000 0.00 0.00 0.00 2.92
3298 4925 1.162698 CACTGTGTTGGCTCCTGATG 58.837 55.000 0.00 0.00 0.00 3.07
3299 4926 0.037303 CCACTGTGTTGGCTCCTGAT 59.963 55.000 7.08 0.00 0.00 2.90
3300 4927 1.451504 CCACTGTGTTGGCTCCTGA 59.548 57.895 7.08 0.00 0.00 3.86
3301 4928 4.069869 CCACTGTGTTGGCTCCTG 57.930 61.111 7.08 0.00 0.00 3.86
3307 4934 1.172180 AATCGTGGCCACTGTGTTGG 61.172 55.000 32.28 15.74 39.98 3.77
3308 4935 0.040157 CAATCGTGGCCACTGTGTTG 60.040 55.000 32.28 24.12 0.00 3.33
3309 4936 0.179032 TCAATCGTGGCCACTGTGTT 60.179 50.000 32.28 18.05 0.00 3.32
3310 4937 0.603707 CTCAATCGTGGCCACTGTGT 60.604 55.000 32.28 12.92 0.00 3.72
3311 4938 1.915614 GCTCAATCGTGGCCACTGTG 61.916 60.000 32.28 24.85 0.00 3.66
3312 4939 1.672356 GCTCAATCGTGGCCACTGT 60.672 57.895 32.28 18.33 0.00 3.55
3313 4940 1.364626 GAGCTCAATCGTGGCCACTG 61.365 60.000 32.28 23.64 0.00 3.66
3314 4941 1.078848 GAGCTCAATCGTGGCCACT 60.079 57.895 32.28 13.41 0.00 4.00
3315 4942 1.375908 TGAGCTCAATCGTGGCCAC 60.376 57.895 26.78 26.78 0.00 5.01
3316 4943 1.375908 GTGAGCTCAATCGTGGCCA 60.376 57.895 20.19 0.00 0.00 5.36
3317 4944 0.955428 TTGTGAGCTCAATCGTGGCC 60.955 55.000 20.19 3.67 0.00 5.36
3318 4945 0.874390 TTTGTGAGCTCAATCGTGGC 59.126 50.000 20.19 4.49 0.00 5.01
3319 4946 2.096069 CACTTTGTGAGCTCAATCGTGG 60.096 50.000 20.19 9.29 35.23 4.94
3320 4947 2.096069 CCACTTTGTGAGCTCAATCGTG 60.096 50.000 20.19 20.61 35.23 4.35
3321 4948 2.146342 CCACTTTGTGAGCTCAATCGT 58.854 47.619 20.19 10.49 35.23 3.73
3322 4949 1.135859 GCCACTTTGTGAGCTCAATCG 60.136 52.381 20.19 9.83 35.23 3.34
3323 4950 1.200948 GGCCACTTTGTGAGCTCAATC 59.799 52.381 20.19 7.78 35.23 2.67
3324 4951 1.251251 GGCCACTTTGTGAGCTCAAT 58.749 50.000 20.19 0.00 35.23 2.57
3325 4952 0.106769 TGGCCACTTTGTGAGCTCAA 60.107 50.000 20.19 6.23 35.23 3.02
3326 4953 0.106769 TTGGCCACTTTGTGAGCTCA 60.107 50.000 13.74 13.74 35.23 4.26
3327 4954 1.032014 TTTGGCCACTTTGTGAGCTC 58.968 50.000 3.88 6.82 35.23 4.09
3328 4955 1.484038 TTTTGGCCACTTTGTGAGCT 58.516 45.000 3.88 0.00 35.23 4.09
3329 4956 2.307934 TTTTTGGCCACTTTGTGAGC 57.692 45.000 3.88 1.64 35.23 4.26
3345 4972 5.511888 CCATCATGAGCTTCCCTTTGTTTTT 60.512 40.000 0.09 0.00 0.00 1.94
3346 4973 4.020839 CCATCATGAGCTTCCCTTTGTTTT 60.021 41.667 0.09 0.00 0.00 2.43
3347 4974 3.512724 CCATCATGAGCTTCCCTTTGTTT 59.487 43.478 0.09 0.00 0.00 2.83
3348 4975 3.094572 CCATCATGAGCTTCCCTTTGTT 58.905 45.455 0.09 0.00 0.00 2.83
3349 4976 2.042162 ACCATCATGAGCTTCCCTTTGT 59.958 45.455 0.09 0.00 0.00 2.83
3350 4977 2.731572 ACCATCATGAGCTTCCCTTTG 58.268 47.619 0.09 0.00 0.00 2.77
3351 4978 3.682718 CGTACCATCATGAGCTTCCCTTT 60.683 47.826 0.09 0.00 0.00 3.11
3444 5074 3.779759 TGAAACAACAGGTGCATTGTTC 58.220 40.909 14.68 9.90 45.86 3.18
3446 5076 3.023119 TCTGAAACAACAGGTGCATTGT 58.977 40.909 0.00 0.00 40.76 2.71
3447 5077 3.067180 AGTCTGAAACAACAGGTGCATTG 59.933 43.478 0.00 0.00 38.31 2.82
3455 5085 4.319046 CGGATGAACAGTCTGAAACAACAG 60.319 45.833 6.91 0.00 39.02 3.16
3508 5138 3.523564 CCTTCCTCAAACCCTCCAATAGA 59.476 47.826 0.00 0.00 0.00 1.98
3513 5143 1.705186 CTTCCTTCCTCAAACCCTCCA 59.295 52.381 0.00 0.00 0.00 3.86
3517 5147 1.073923 TCAGCTTCCTTCCTCAAACCC 59.926 52.381 0.00 0.00 0.00 4.11
3519 5149 2.431454 CCTCAGCTTCCTTCCTCAAAC 58.569 52.381 0.00 0.00 0.00 2.93
3521 5151 0.326264 GCCTCAGCTTCCTTCCTCAA 59.674 55.000 0.00 0.00 35.50 3.02
3530 5160 0.108945 GGTTGCATTGCCTCAGCTTC 60.109 55.000 6.12 0.00 40.80 3.86
3533 5163 1.214589 CTGGTTGCATTGCCTCAGC 59.785 57.895 6.12 0.74 40.48 4.26
3547 5177 1.705186 AGTTAATCCACTGGCACTGGT 59.295 47.619 12.14 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.