Multiple sequence alignment - TraesCS2A01G028700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G028700 chr2A 100.000 3545 0 0 1 3545 13012246 13015790 0.000000e+00 6547.0
1 TraesCS2A01G028700 chr2A 82.436 1560 225 25 1016 2538 13039369 13037822 0.000000e+00 1317.0
2 TraesCS2A01G028700 chr2A 80.221 1537 269 22 1021 2538 13069000 13067480 0.000000e+00 1122.0
3 TraesCS2A01G028700 chr2A 83.193 952 151 9 1592 2537 12990992 12991940 0.000000e+00 863.0
4 TraesCS2A01G028700 chr2A 80.675 533 83 12 992 1520 12990390 12990906 2.560000e-106 396.0
5 TraesCS2A01G028700 chr2A 100.000 71 0 0 2981 3051 13015155 13015225 7.990000e-27 132.0
6 TraesCS2A01G028700 chr2A 100.000 71 0 0 2910 2980 13015226 13015296 7.990000e-27 132.0
7 TraesCS2A01G028700 chr2B 90.947 2154 150 24 838 2978 18950456 18948335 0.000000e+00 2856.0
8 TraesCS2A01G028700 chr2B 81.910 1581 234 29 1012 2558 19075093 19073531 0.000000e+00 1288.0
9 TraesCS2A01G028700 chr2B 80.583 1545 261 23 1017 2538 19102540 19101012 0.000000e+00 1155.0
10 TraesCS2A01G028700 chr2B 82.283 920 159 3 1623 2538 19084242 19083323 0.000000e+00 793.0
11 TraesCS2A01G028700 chr2B 78.002 1141 214 24 1036 2157 18913724 18914846 0.000000e+00 682.0
12 TraesCS2A01G028700 chr2B 86.667 450 48 7 1 440 18977993 18977546 4.110000e-134 488.0
13 TraesCS2A01G028700 chr2B 81.964 499 75 10 1025 1520 18955473 18954987 3.290000e-110 409.0
14 TraesCS2A01G028700 chr2B 81.640 561 35 30 2981 3485 18948399 18947851 1.530000e-108 403.0
15 TraesCS2A01G028700 chr2B 94.643 56 3 0 3490 3545 18947822 18947767 1.750000e-13 87.9
16 TraesCS2A01G028700 chr2B 85.915 71 8 2 2602 2671 244086790 244086721 1.360000e-09 75.0
17 TraesCS2A01G028700 chr2B 89.655 58 3 3 2605 2660 45729774 45729718 1.770000e-08 71.3
18 TraesCS2A01G028700 chr2D 88.747 2195 159 46 838 2969 12556446 12558615 0.000000e+00 2604.0
19 TraesCS2A01G028700 chr2D 83.073 1536 230 21 1016 2538 12581483 12579965 0.000000e+00 1369.0
20 TraesCS2A01G028700 chr2D 83.067 939 150 9 1598 2530 12551275 12552210 0.000000e+00 845.0
21 TraesCS2A01G028700 chr2D 92.820 571 28 6 2981 3545 12558556 12559119 0.000000e+00 815.0
22 TraesCS2A01G028700 chr2D 87.251 502 45 9 152 641 12555859 12556353 4.000000e-154 555.0
23 TraesCS2A01G028700 chr2D 80.705 539 78 12 992 1520 12550655 12551177 2.560000e-106 396.0
24 TraesCS2A01G028700 chr5A 84.958 472 50 13 1017 1482 529080997 529080541 3.220000e-125 459.0
25 TraesCS2A01G028700 chr5D 83.475 472 57 14 1017 1482 416259144 416258688 1.520000e-113 420.0
26 TraesCS2A01G028700 chr5B 83.475 472 57 12 1017 1482 503116620 503116164 1.520000e-113 420.0
27 TraesCS2A01G028700 chrUn 81.818 506 74 12 1015 1520 108385235 108384748 3.290000e-110 409.0
28 TraesCS2A01G028700 chr7A 80.426 470 72 14 1017 1482 8890846 8890393 1.220000e-89 340.0
29 TraesCS2A01G028700 chr7A 95.349 43 0 1 2621 2661 730828942 730828900 2.280000e-07 67.6
30 TraesCS2A01G028700 chr6B 82.591 247 37 5 1018 1259 612745121 612744876 2.770000e-51 213.0
31 TraesCS2A01G028700 chr6B 83.929 168 20 5 294 458 257239919 257239756 1.700000e-33 154.0
32 TraesCS2A01G028700 chr6A 75.052 477 103 11 1018 1489 563484792 563485257 1.290000e-49 207.0
33 TraesCS2A01G028700 chr6D 83.562 219 34 2 1018 1235 408157055 408156838 1.670000e-48 204.0
34 TraesCS2A01G028700 chr4B 80.385 260 49 2 21 278 649697520 649697779 2.790000e-46 196.0
35 TraesCS2A01G028700 chr3A 91.045 67 4 2 2601 2666 738056570 738056635 4.870000e-14 89.8
36 TraesCS2A01G028700 chr3A 95.652 46 1 1 2615 2660 587393361 587393405 4.910000e-09 73.1
37 TraesCS2A01G028700 chr3A 87.500 64 5 3 177 238 129491155 129491093 1.770000e-08 71.3
38 TraesCS2A01G028700 chr3A 84.722 72 8 3 2602 2671 137994371 137994301 6.350000e-08 69.4
39 TraesCS2A01G028700 chr7B 87.302 63 4 4 2601 2660 460566225 460566164 6.350000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G028700 chr2A 13012246 13015790 3544 False 2270.333333 6547 100.000000 1 3545 3 chr2A.!!$F2 3544
1 TraesCS2A01G028700 chr2A 13037822 13039369 1547 True 1317.000000 1317 82.436000 1016 2538 1 chr2A.!!$R1 1522
2 TraesCS2A01G028700 chr2A 13067480 13069000 1520 True 1122.000000 1122 80.221000 1021 2538 1 chr2A.!!$R2 1517
3 TraesCS2A01G028700 chr2A 12990390 12991940 1550 False 629.500000 863 81.934000 992 2537 2 chr2A.!!$F1 1545
4 TraesCS2A01G028700 chr2B 19073531 19075093 1562 True 1288.000000 1288 81.910000 1012 2558 1 chr2B.!!$R3 1546
5 TraesCS2A01G028700 chr2B 19101012 19102540 1528 True 1155.000000 1155 80.583000 1017 2538 1 chr2B.!!$R5 1521
6 TraesCS2A01G028700 chr2B 18947767 18950456 2689 True 1115.633333 2856 89.076667 838 3545 3 chr2B.!!$R8 2707
7 TraesCS2A01G028700 chr2B 19083323 19084242 919 True 793.000000 793 82.283000 1623 2538 1 chr2B.!!$R4 915
8 TraesCS2A01G028700 chr2B 18913724 18914846 1122 False 682.000000 682 78.002000 1036 2157 1 chr2B.!!$F1 1121
9 TraesCS2A01G028700 chr2D 12579965 12581483 1518 True 1369.000000 1369 83.073000 1016 2538 1 chr2D.!!$R1 1522
10 TraesCS2A01G028700 chr2D 12550655 12559119 8464 False 1043.000000 2604 86.518000 152 3545 5 chr2D.!!$F1 3393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
667 5732 0.030638 AAGTCAAAAATGCACGCGCT 59.969 45.0 5.73 0.0 39.64 5.92 F
958 6023 0.034767 CTGCAAGCAGGAAGATCCCA 60.035 55.0 14.10 0.0 37.19 4.37 F
1524 6598 0.105039 CCCCTCTCGAAGGTATGCAC 59.895 60.0 11.21 0.0 44.56 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 6608 0.179084 GCTGCTAGGCACGTATTCCA 60.179 55.0 0.0 0.0 33.79 3.53 R
2452 7603 0.321996 GAAGCGACCTCCTTCCACTT 59.678 55.0 0.0 0.0 34.12 3.16 R
3166 8386 0.036388 AATGACTCGCACCGTTCCAT 60.036 50.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.998667 GCTACGCGCTTACAGCAG 59.001 61.111 5.73 0.00 42.58 4.24
31 32 2.998667 CTACGCGCTTACAGCAGC 59.001 61.111 5.73 0.15 42.58 5.25
33 34 2.890847 CTACGCGCTTACAGCAGCCT 62.891 60.000 5.73 0.00 42.58 4.58
34 35 3.857854 CGCGCTTACAGCAGCCTG 61.858 66.667 5.56 0.00 42.58 4.85
36 37 2.046892 CGCTTACAGCAGCCTGGT 60.047 61.111 0.00 0.00 42.58 4.00
43 44 3.811702 AGCAGCCTGGTGAGCTTA 58.188 55.556 0.00 0.00 38.95 3.09
45 46 1.197430 AGCAGCCTGGTGAGCTTACT 61.197 55.000 8.70 0.00 38.95 2.24
46 47 1.023513 GCAGCCTGGTGAGCTTACTG 61.024 60.000 8.70 0.00 38.95 2.74
47 48 1.023513 CAGCCTGGTGAGCTTACTGC 61.024 60.000 8.70 9.03 38.95 4.40
48 49 1.746991 GCCTGGTGAGCTTACTGCC 60.747 63.158 8.70 0.00 44.23 4.85
49 50 1.448540 CCTGGTGAGCTTACTGCCG 60.449 63.158 8.70 0.00 44.23 5.69
50 51 1.448540 CTGGTGAGCTTACTGCCGG 60.449 63.158 8.70 0.00 44.23 6.13
51 52 1.888436 CTGGTGAGCTTACTGCCGGA 61.888 60.000 5.05 0.00 44.23 5.14
53 54 1.292223 GTGAGCTTACTGCCGGACA 59.708 57.895 5.05 1.09 44.23 4.02
54 55 0.108138 GTGAGCTTACTGCCGGACAT 60.108 55.000 5.05 0.00 44.23 3.06
55 56 0.108186 TGAGCTTACTGCCGGACATG 60.108 55.000 5.05 0.00 44.23 3.21
57 58 1.819632 GCTTACTGCCGGACATGGG 60.820 63.158 5.05 0.00 35.15 4.00
61 62 3.083349 CTGCCGGACATGGGAGGA 61.083 66.667 5.05 0.00 43.22 3.71
63 64 3.399181 GCCGGACATGGGAGGACA 61.399 66.667 5.05 0.00 0.00 4.02
64 65 2.746375 GCCGGACATGGGAGGACAT 61.746 63.158 5.05 0.00 0.00 3.06
71 72 1.977056 CATGGGAGGACATGTCATGG 58.023 55.000 26.47 5.49 42.48 3.66
72 73 0.848735 ATGGGAGGACATGTCATGGG 59.151 55.000 26.47 0.00 33.60 4.00
73 74 0.253113 TGGGAGGACATGTCATGGGA 60.253 55.000 26.47 5.18 33.60 4.37
74 75 0.918983 GGGAGGACATGTCATGGGAA 59.081 55.000 26.47 0.00 33.60 3.97
76 77 2.369394 GGAGGACATGTCATGGGAAAC 58.631 52.381 26.47 7.10 33.60 2.78
78 79 1.094785 GGACATGTCATGGGAAACGG 58.905 55.000 26.47 0.00 33.60 4.44
79 80 1.094785 GACATGTCATGGGAAACGGG 58.905 55.000 21.07 0.00 33.60 5.28
80 81 0.965363 ACATGTCATGGGAAACGGGC 60.965 55.000 17.08 0.00 33.60 6.13
81 82 0.680921 CATGTCATGGGAAACGGGCT 60.681 55.000 4.78 0.00 0.00 5.19
82 83 0.394352 ATGTCATGGGAAACGGGCTC 60.394 55.000 0.00 0.00 0.00 4.70
83 84 1.749258 GTCATGGGAAACGGGCTCC 60.749 63.158 0.00 0.00 0.00 4.70
104 105 2.279650 GCGGCCGGCGATAAACTA 60.280 61.111 29.38 0.00 0.00 2.24
105 106 2.308039 GCGGCCGGCGATAAACTAG 61.308 63.158 29.38 3.85 0.00 2.57
107 108 1.444672 GGCCGGCGATAAACTAGGT 59.555 57.895 22.54 0.00 0.00 3.08
109 110 0.103572 GCCGGCGATAAACTAGGTGA 59.896 55.000 12.58 0.00 0.00 4.02
110 111 1.868519 GCCGGCGATAAACTAGGTGAG 60.869 57.143 12.58 0.00 0.00 3.51
111 112 1.679680 CCGGCGATAAACTAGGTGAGA 59.320 52.381 9.30 0.00 0.00 3.27
112 113 2.100252 CCGGCGATAAACTAGGTGAGAA 59.900 50.000 9.30 0.00 0.00 2.87
114 115 3.428452 CGGCGATAAACTAGGTGAGAACA 60.428 47.826 0.00 0.00 0.00 3.18
115 116 4.113354 GGCGATAAACTAGGTGAGAACAG 58.887 47.826 0.00 0.00 0.00 3.16
117 118 4.113354 CGATAAACTAGGTGAGAACAGCC 58.887 47.826 0.00 0.00 44.43 4.85
119 120 5.067413 CGATAAACTAGGTGAGAACAGCCTA 59.933 44.000 0.00 0.00 44.43 3.93
120 121 4.810191 AAACTAGGTGAGAACAGCCTAG 57.190 45.455 13.47 13.47 44.15 3.02
124 125 1.007238 AGGTGAGAACAGCCTAGCCTA 59.993 52.381 0.00 0.00 44.43 3.93
125 126 1.410882 GGTGAGAACAGCCTAGCCTAG 59.589 57.143 0.00 0.00 38.41 3.02
126 127 2.104170 GTGAGAACAGCCTAGCCTAGT 58.896 52.381 0.00 0.00 0.00 2.57
127 128 2.100087 GTGAGAACAGCCTAGCCTAGTC 59.900 54.545 0.00 0.00 0.00 2.59
128 129 2.024846 TGAGAACAGCCTAGCCTAGTCT 60.025 50.000 0.00 0.00 0.00 3.24
129 130 2.360801 GAGAACAGCCTAGCCTAGTCTG 59.639 54.545 8.20 8.20 0.00 3.51
130 131 0.827368 AACAGCCTAGCCTAGTCTGC 59.173 55.000 9.61 0.27 0.00 4.26
131 132 0.032615 ACAGCCTAGCCTAGTCTGCT 60.033 55.000 9.61 2.66 42.81 4.24
133 134 2.158385 ACAGCCTAGCCTAGTCTGCTAT 60.158 50.000 9.61 0.00 40.34 2.97
134 135 3.074687 ACAGCCTAGCCTAGTCTGCTATA 59.925 47.826 9.61 0.00 40.34 1.31
136 137 3.332485 AGCCTAGCCTAGTCTGCTATAGT 59.668 47.826 0.84 0.00 40.34 2.12
137 138 4.083565 GCCTAGCCTAGTCTGCTATAGTT 58.916 47.826 0.84 0.00 40.34 2.24
138 139 4.525100 GCCTAGCCTAGTCTGCTATAGTTT 59.475 45.833 0.84 0.00 40.34 2.66
140 141 6.127842 GCCTAGCCTAGTCTGCTATAGTTTAG 60.128 46.154 0.84 0.00 40.34 1.85
141 142 5.715434 AGCCTAGTCTGCTATAGTTTAGC 57.285 43.478 5.71 5.71 37.28 3.09
142 143 5.390387 AGCCTAGTCTGCTATAGTTTAGCT 58.610 41.667 12.92 0.00 40.95 3.32
143 144 5.242838 AGCCTAGTCTGCTATAGTTTAGCTG 59.757 44.000 12.92 12.21 40.95 4.24
144 145 5.241949 GCCTAGTCTGCTATAGTTTAGCTGA 59.758 44.000 15.04 15.04 43.15 4.26
146 147 7.684670 GCCTAGTCTGCTATAGTTTAGCTGAAA 60.685 40.741 18.87 11.89 45.49 2.69
147 148 8.364142 CCTAGTCTGCTATAGTTTAGCTGAAAT 58.636 37.037 18.87 14.38 45.49 2.17
150 151 9.703892 AGTCTGCTATAGTTTAGCTGAAATATG 57.296 33.333 18.24 10.84 45.49 1.78
151 152 9.482627 GTCTGCTATAGTTTAGCTGAAATATGT 57.517 33.333 18.24 0.24 45.49 2.29
154 155 8.978539 TGCTATAGTTTAGCTGAAATATGTTCG 58.021 33.333 18.24 7.66 40.95 3.95
155 156 9.193133 GCTATAGTTTAGCTGAAATATGTTCGA 57.807 33.333 18.24 0.94 37.56 3.71
165 5219 9.507280 AGCTGAAATATGTTCGAAATGTAAATG 57.493 29.630 0.00 0.00 0.00 2.32
166 5220 8.745837 GCTGAAATATGTTCGAAATGTAAATGG 58.254 33.333 0.00 0.00 0.00 3.16
171 5225 8.835467 ATATGTTCGAAATGTAAATGGTTTCG 57.165 30.769 0.00 11.83 43.84 3.46
175 5229 7.171167 TGTTCGAAATGTAAATGGTTTCGTCTA 59.829 33.333 15.99 4.63 43.23 2.59
217 5271 4.141756 TGGTTTGCATGAATTCTGTTTGGT 60.142 37.500 7.05 0.00 0.00 3.67
229 5283 9.883142 TGAATTCTGTTTGGTTTGTTAAAATCT 57.117 25.926 7.05 0.00 0.00 2.40
237 5291 6.707440 TGGTTTGTTAAAATCTGCTCTGAA 57.293 33.333 0.00 0.00 0.00 3.02
247 5301 4.778534 ATCTGCTCTGAAATGTTTGTGG 57.221 40.909 0.00 0.00 0.00 4.17
248 5302 2.886523 TCTGCTCTGAAATGTTTGTGGG 59.113 45.455 0.00 0.00 0.00 4.61
264 5318 4.740822 GGCACGGTTGGATGGCCT 62.741 66.667 3.32 0.00 41.39 5.19
283 5345 0.035725 TGCTCCTGCATCAAGACTGG 60.036 55.000 0.00 0.00 45.31 4.00
293 5355 1.073199 CAAGACTGGTCCCCACCAC 59.927 63.158 0.00 0.00 46.63 4.16
297 5359 2.397413 GACTGGTCCCCACCACAGTG 62.397 65.000 0.40 0.00 46.63 3.66
299 5361 2.397413 CTGGTCCCCACCACAGTGAC 62.397 65.000 0.62 0.00 46.63 3.67
348 5411 5.588648 GGCCTGATAGTAAAACAATGCTACA 59.411 40.000 0.00 0.00 0.00 2.74
426 5491 2.033141 CCAGAGCGGGCCATATGG 59.967 66.667 18.07 18.07 38.53 2.74
427 5492 2.822637 CCAGAGCGGGCCATATGGT 61.823 63.158 22.79 2.27 37.57 3.55
453 5518 2.477845 CCTTGCTGAAGCTTCGCG 59.522 61.111 26.51 19.48 42.66 5.87
482 5547 2.416260 GGTCAGCGGACGGATACC 59.584 66.667 10.95 0.00 45.28 2.73
496 5561 0.935196 GATACCGTGTCCGATTTGGC 59.065 55.000 0.00 0.00 37.80 4.52
497 5562 0.250793 ATACCGTGTCCGATTTGGCA 59.749 50.000 0.00 0.00 37.80 4.92
500 5565 0.098728 CCGTGTCCGATTTGGCAATC 59.901 55.000 0.00 0.14 37.80 2.67
520 5585 3.889815 TCAACATTGGAGATGCCCTTAG 58.110 45.455 0.00 0.00 34.97 2.18
532 5597 7.092623 TGGAGATGCCCTTAGTCAGTTATAAAA 60.093 37.037 0.00 0.00 34.97 1.52
547 5612 7.673926 TCAGTTATAAAATGAAGCTTCCCCTTT 59.326 33.333 23.42 19.44 0.00 3.11
550 5615 2.999185 AATGAAGCTTCCCCTTTCCA 57.001 45.000 23.42 3.26 0.00 3.53
553 5618 0.251341 GAAGCTTCCCCTTTCCAGCA 60.251 55.000 15.97 0.00 34.49 4.41
554 5619 0.188342 AAGCTTCCCCTTTCCAGCAA 59.812 50.000 0.00 0.00 34.49 3.91
555 5620 0.188342 AGCTTCCCCTTTCCAGCAAA 59.812 50.000 0.00 0.00 34.49 3.68
584 5649 5.300539 AGAAAGAGAAAAAGTGAAGCTTCCC 59.699 40.000 23.42 12.71 36.17 3.97
641 5706 3.055819 TGAAGCTACTAGGAAGCCAGTTG 60.056 47.826 13.91 0.00 41.02 3.16
642 5707 1.208293 AGCTACTAGGAAGCCAGTTGC 59.792 52.381 13.91 0.00 41.76 4.17
643 5708 4.362206 AGCTACTAGGAAGCCAGTTGCG 62.362 54.545 13.91 0.00 44.68 4.85
651 5716 0.396811 AAGCCAGTTGCGTAGGAAGT 59.603 50.000 0.00 0.00 43.99 3.01
652 5717 0.037232 AGCCAGTTGCGTAGGAAGTC 60.037 55.000 0.00 0.00 40.25 3.01
653 5718 0.320421 GCCAGTTGCGTAGGAAGTCA 60.320 55.000 0.00 0.00 40.25 3.41
654 5719 1.876416 GCCAGTTGCGTAGGAAGTCAA 60.876 52.381 0.00 0.00 40.25 3.18
655 5720 2.489971 CCAGTTGCGTAGGAAGTCAAA 58.510 47.619 0.00 0.00 40.25 2.69
656 5721 2.875933 CCAGTTGCGTAGGAAGTCAAAA 59.124 45.455 0.00 0.00 40.25 2.44
657 5722 3.314080 CCAGTTGCGTAGGAAGTCAAAAA 59.686 43.478 0.00 0.00 40.25 1.94
658 5723 4.023193 CCAGTTGCGTAGGAAGTCAAAAAT 60.023 41.667 0.00 0.00 40.25 1.82
659 5724 4.911610 CAGTTGCGTAGGAAGTCAAAAATG 59.088 41.667 0.00 0.00 40.25 2.32
660 5725 3.552604 TGCGTAGGAAGTCAAAAATGC 57.447 42.857 0.00 0.00 0.00 3.56
661 5726 2.881513 TGCGTAGGAAGTCAAAAATGCA 59.118 40.909 0.00 0.00 0.00 3.96
662 5727 3.234386 GCGTAGGAAGTCAAAAATGCAC 58.766 45.455 0.00 0.00 0.00 4.57
663 5728 3.479006 CGTAGGAAGTCAAAAATGCACG 58.521 45.455 0.00 0.00 0.00 5.34
664 5729 2.422276 AGGAAGTCAAAAATGCACGC 57.578 45.000 0.00 0.00 0.00 5.34
665 5730 1.052287 GGAAGTCAAAAATGCACGCG 58.948 50.000 3.53 3.53 0.00 6.01
666 5731 0.430858 GAAGTCAAAAATGCACGCGC 59.569 50.000 5.73 0.00 39.24 6.86
667 5732 0.030638 AAGTCAAAAATGCACGCGCT 59.969 45.000 5.73 0.00 39.64 5.92
668 5733 0.030638 AGTCAAAAATGCACGCGCTT 59.969 45.000 5.73 0.00 39.64 4.68
669 5734 1.265635 AGTCAAAAATGCACGCGCTTA 59.734 42.857 5.73 0.00 39.64 3.09
670 5735 2.095263 AGTCAAAAATGCACGCGCTTAT 60.095 40.909 5.73 0.00 39.64 1.73
671 5736 2.276282 GTCAAAAATGCACGCGCTTATC 59.724 45.455 5.73 0.00 39.64 1.75
672 5737 1.583404 CAAAAATGCACGCGCTTATCC 59.417 47.619 5.73 0.00 39.64 2.59
673 5738 0.248054 AAAATGCACGCGCTTATCCG 60.248 50.000 5.73 0.00 39.64 4.18
682 5747 2.062779 CGCTTATCCGCTATCACGC 58.937 57.895 0.00 0.00 0.00 5.34
683 5748 0.387367 CGCTTATCCGCTATCACGCT 60.387 55.000 0.00 0.00 0.00 5.07
684 5749 1.135774 CGCTTATCCGCTATCACGCTA 60.136 52.381 0.00 0.00 0.00 4.26
685 5750 2.478031 CGCTTATCCGCTATCACGCTAT 60.478 50.000 0.00 0.00 0.00 2.97
686 5751 2.854777 GCTTATCCGCTATCACGCTATG 59.145 50.000 0.00 0.00 0.00 2.23
687 5752 3.427638 GCTTATCCGCTATCACGCTATGA 60.428 47.826 0.00 0.00 43.13 2.15
688 5753 2.929531 ATCCGCTATCACGCTATGAG 57.070 50.000 0.00 0.00 41.91 2.90
689 5754 1.605753 TCCGCTATCACGCTATGAGT 58.394 50.000 0.00 0.00 41.91 3.41
690 5755 1.954382 TCCGCTATCACGCTATGAGTT 59.046 47.619 0.00 0.00 41.91 3.01
691 5756 2.054363 CCGCTATCACGCTATGAGTTG 58.946 52.381 0.00 0.00 41.91 3.16
692 5757 2.543861 CCGCTATCACGCTATGAGTTGT 60.544 50.000 0.00 0.00 41.91 3.32
693 5758 2.469147 CGCTATCACGCTATGAGTTGTG 59.531 50.000 0.00 0.00 41.91 3.33
694 5759 3.448686 GCTATCACGCTATGAGTTGTGT 58.551 45.455 0.00 0.00 41.91 3.72
695 5760 3.243877 GCTATCACGCTATGAGTTGTGTG 59.756 47.826 0.00 0.00 41.91 3.82
696 5761 2.078849 TCACGCTATGAGTTGTGTGG 57.921 50.000 0.00 0.00 42.75 4.17
697 5762 1.078709 CACGCTATGAGTTGTGTGGG 58.921 55.000 0.00 0.00 39.97 4.61
698 5763 0.973632 ACGCTATGAGTTGTGTGGGA 59.026 50.000 0.00 0.00 0.00 4.37
699 5764 1.346395 ACGCTATGAGTTGTGTGGGAA 59.654 47.619 0.00 0.00 0.00 3.97
700 5765 2.002586 CGCTATGAGTTGTGTGGGAAG 58.997 52.381 0.00 0.00 0.00 3.46
701 5766 2.612972 CGCTATGAGTTGTGTGGGAAGT 60.613 50.000 0.00 0.00 0.00 3.01
702 5767 3.003480 GCTATGAGTTGTGTGGGAAGTC 58.997 50.000 0.00 0.00 0.00 3.01
703 5768 3.557054 GCTATGAGTTGTGTGGGAAGTCA 60.557 47.826 0.00 0.00 37.22 3.41
704 5769 2.620251 TGAGTTGTGTGGGAAGTCAG 57.380 50.000 0.00 0.00 30.80 3.51
705 5770 1.837439 TGAGTTGTGTGGGAAGTCAGT 59.163 47.619 0.00 0.00 30.80 3.41
706 5771 2.158957 TGAGTTGTGTGGGAAGTCAGTC 60.159 50.000 0.00 0.00 30.80 3.51
707 5772 1.202533 AGTTGTGTGGGAAGTCAGTCG 60.203 52.381 0.00 0.00 0.00 4.18
708 5773 0.828022 TTGTGTGGGAAGTCAGTCGT 59.172 50.000 0.00 0.00 0.00 4.34
709 5774 0.387929 TGTGTGGGAAGTCAGTCGTC 59.612 55.000 0.00 0.00 0.00 4.20
710 5775 0.674534 GTGTGGGAAGTCAGTCGTCT 59.325 55.000 0.00 0.00 0.00 4.18
711 5776 0.959553 TGTGGGAAGTCAGTCGTCTC 59.040 55.000 0.00 0.00 0.00 3.36
734 5799 8.957466 TCTCTACGATTAGTCTTCTCAAATGAA 58.043 33.333 0.00 0.00 0.00 2.57
735 5800 9.232082 CTCTACGATTAGTCTTCTCAAATGAAG 57.768 37.037 0.00 0.00 43.36 3.02
736 5801 6.654793 ACGATTAGTCTTCTCAAATGAAGC 57.345 37.500 0.00 0.00 42.15 3.86
737 5802 6.402222 ACGATTAGTCTTCTCAAATGAAGCT 58.598 36.000 0.00 0.00 42.15 3.74
738 5803 7.548097 ACGATTAGTCTTCTCAAATGAAGCTA 58.452 34.615 0.00 0.00 42.15 3.32
740 5805 7.305705 CGATTAGTCTTCTCAAATGAAGCTACG 60.306 40.741 0.00 0.00 42.15 3.51
741 5806 5.140747 AGTCTTCTCAAATGAAGCTACGT 57.859 39.130 0.00 0.00 42.15 3.57
743 5808 6.094061 AGTCTTCTCAAATGAAGCTACGTAC 58.906 40.000 0.00 0.00 42.15 3.67
744 5809 5.003590 GTCTTCTCAAATGAAGCTACGTACG 59.996 44.000 15.01 15.01 42.15 3.67
745 5810 4.430137 TCTCAAATGAAGCTACGTACGT 57.570 40.909 25.98 25.98 0.00 3.57
746 5811 5.550232 TCTCAAATGAAGCTACGTACGTA 57.450 39.130 25.41 25.41 0.00 3.57
747 5812 5.327091 TCTCAAATGAAGCTACGTACGTAC 58.673 41.667 23.60 18.90 0.00 3.67
748 5813 4.414852 TCAAATGAAGCTACGTACGTACC 58.585 43.478 23.60 17.46 0.00 3.34
749 5814 3.427161 AATGAAGCTACGTACGTACCC 57.573 47.619 23.60 16.67 0.00 3.69
750 5815 1.819928 TGAAGCTACGTACGTACCCA 58.180 50.000 23.60 14.98 0.00 4.51
751 5816 2.368439 TGAAGCTACGTACGTACCCAT 58.632 47.619 23.60 10.80 0.00 4.00
752 5817 2.097954 TGAAGCTACGTACGTACCCATG 59.902 50.000 23.60 14.59 0.00 3.66
753 5818 0.383231 AGCTACGTACGTACCCATGC 59.617 55.000 23.60 22.70 0.00 4.06
754 5819 0.101040 GCTACGTACGTACCCATGCA 59.899 55.000 23.60 3.50 0.00 3.96
755 5820 1.862815 GCTACGTACGTACCCATGCAG 60.863 57.143 23.60 14.27 0.00 4.41
756 5821 0.101040 TACGTACGTACCCATGCAGC 59.899 55.000 23.60 0.00 0.00 5.25
773 5838 2.095059 GCAGCATGTCCGTTTCAGAAAT 60.095 45.455 0.00 0.00 39.31 2.17
777 5842 4.520492 AGCATGTCCGTTTCAGAAATTTCT 59.480 37.500 15.11 15.11 38.25 2.52
781 5846 7.542130 GCATGTCCGTTTCAGAAATTTCTAAAT 59.458 33.333 20.07 1.38 35.34 1.40
805 5870 3.243877 GCACATGCGTACAAGAGACTATG 59.756 47.826 0.00 0.00 0.00 2.23
807 5872 3.181475 ACATGCGTACAAGAGACTATGGG 60.181 47.826 0.00 0.00 0.00 4.00
808 5873 2.730382 TGCGTACAAGAGACTATGGGA 58.270 47.619 0.00 0.00 0.00 4.37
809 5874 2.426024 TGCGTACAAGAGACTATGGGAC 59.574 50.000 0.00 0.00 0.00 4.46
810 5875 2.541178 GCGTACAAGAGACTATGGGACG 60.541 54.545 4.78 4.78 34.86 4.79
811 5876 2.941064 CGTACAAGAGACTATGGGACGA 59.059 50.000 2.89 0.00 34.12 4.20
812 5877 3.376234 CGTACAAGAGACTATGGGACGAA 59.624 47.826 2.89 0.00 34.12 3.85
813 5878 3.870633 ACAAGAGACTATGGGACGAAC 57.129 47.619 0.00 0.00 0.00 3.95
815 5880 3.833070 ACAAGAGACTATGGGACGAACTT 59.167 43.478 0.00 0.00 0.00 2.66
816 5881 4.283722 ACAAGAGACTATGGGACGAACTTT 59.716 41.667 0.00 0.00 0.00 2.66
817 5882 4.457834 AGAGACTATGGGACGAACTTTG 57.542 45.455 0.00 0.00 0.00 2.77
818 5883 2.930682 GAGACTATGGGACGAACTTTGC 59.069 50.000 0.00 0.00 0.00 3.68
819 5884 2.301870 AGACTATGGGACGAACTTTGCA 59.698 45.455 0.00 0.00 0.00 4.08
820 5885 2.415512 GACTATGGGACGAACTTTGCAC 59.584 50.000 0.00 0.00 0.00 4.57
821 5886 1.737793 CTATGGGACGAACTTTGCACC 59.262 52.381 0.00 0.00 0.00 5.01
822 5887 1.234615 ATGGGACGAACTTTGCACCG 61.235 55.000 0.00 0.00 0.00 4.94
823 5888 1.595929 GGGACGAACTTTGCACCGA 60.596 57.895 0.00 0.00 0.00 4.69
824 5889 0.953960 GGGACGAACTTTGCACCGAT 60.954 55.000 0.00 0.00 0.00 4.18
825 5890 0.872388 GGACGAACTTTGCACCGATT 59.128 50.000 0.00 0.00 0.00 3.34
826 5891 2.070783 GGACGAACTTTGCACCGATTA 58.929 47.619 0.00 0.00 0.00 1.75
827 5892 2.093783 GGACGAACTTTGCACCGATTAG 59.906 50.000 0.00 0.00 0.00 1.73
828 5893 2.735134 GACGAACTTTGCACCGATTAGT 59.265 45.455 0.00 0.00 0.00 2.24
829 5894 2.735134 ACGAACTTTGCACCGATTAGTC 59.265 45.455 0.00 0.00 0.00 2.59
830 5895 2.993899 CGAACTTTGCACCGATTAGTCT 59.006 45.455 0.00 0.00 0.00 3.24
831 5896 3.432252 CGAACTTTGCACCGATTAGTCTT 59.568 43.478 0.00 0.00 0.00 3.01
832 5897 4.434330 CGAACTTTGCACCGATTAGTCTTC 60.434 45.833 0.00 0.00 0.00 2.87
833 5898 3.335579 ACTTTGCACCGATTAGTCTTCC 58.664 45.455 0.00 0.00 0.00 3.46
834 5899 2.004583 TTGCACCGATTAGTCTTCCG 57.995 50.000 0.00 0.00 0.00 4.30
835 5900 0.459585 TGCACCGATTAGTCTTCCGC 60.460 55.000 0.00 0.00 0.00 5.54
836 5901 0.459585 GCACCGATTAGTCTTCCGCA 60.460 55.000 0.00 0.00 0.00 5.69
853 5918 1.660052 CGCATGTGACTTTGAACGGTG 60.660 52.381 0.00 0.00 0.00 4.94
915 5980 6.148645 ACTCACTCTCATCTGCTATATGTACG 59.851 42.308 0.00 0.00 0.00 3.67
916 5981 6.231211 TCACTCTCATCTGCTATATGTACGA 58.769 40.000 0.00 0.00 0.00 3.43
917 5982 6.147985 TCACTCTCATCTGCTATATGTACGAC 59.852 42.308 0.00 0.00 0.00 4.34
958 6023 0.034767 CTGCAAGCAGGAAGATCCCA 60.035 55.000 14.10 0.00 37.19 4.37
979 6044 2.050691 CATTTTCTCCCACAAAACGCG 58.949 47.619 3.53 3.53 0.00 6.01
1010 6075 3.179265 CGACGACATGGCCACGAC 61.179 66.667 19.89 12.99 0.00 4.34
1022 6087 1.587054 CCACGACCGAGAAGAAGCT 59.413 57.895 0.00 0.00 0.00 3.74
1113 6178 1.898574 CTGCAAGGGCTTCCACGTT 60.899 57.895 0.00 0.00 41.91 3.99
1227 6292 2.189521 CCAGACGGCATACCCACC 59.810 66.667 0.00 0.00 0.00 4.61
1233 6298 2.504519 GGCATACCCACCTCCGAC 59.495 66.667 0.00 0.00 0.00 4.79
1492 6566 1.002773 GCAACTTCCGGTTCCTCCTAA 59.997 52.381 0.00 0.00 35.74 2.69
1524 6598 0.105039 CCCCTCTCGAAGGTATGCAC 59.895 60.000 11.21 0.00 44.56 4.57
1527 6601 1.550065 CTCTCGAAGGTATGCACGTG 58.450 55.000 12.28 12.28 0.00 4.49
1528 6602 0.457853 TCTCGAAGGTATGCACGTGC 60.458 55.000 33.11 33.11 42.50 5.34
1542 6616 2.570169 CACGTGCAAGTTTGGAATACG 58.430 47.619 0.82 0.00 0.00 3.06
1544 6648 2.032377 ACGTGCAAGTTTGGAATACGTG 60.032 45.455 0.00 0.00 30.24 4.49
1552 6664 2.309528 TTGGAATACGTGCCTAGCAG 57.690 50.000 0.00 0.00 40.08 4.24
1582 6720 6.147328 GTCCTGAAGGTATAACTTGTGTTGAC 59.853 42.308 8.02 3.99 35.72 3.18
1589 6727 8.362464 AGGTATAACTTGTGTTGACTGATCTA 57.638 34.615 0.00 0.00 37.59 1.98
1590 6728 8.982723 AGGTATAACTTGTGTTGACTGATCTAT 58.017 33.333 0.00 0.00 37.59 1.98
1657 6795 4.457496 AGGCACACGGGATGAGCG 62.457 66.667 0.00 0.00 45.11 5.03
1683 6821 2.802106 CGCCTCCGAGACTTCTCC 59.198 66.667 0.00 0.00 39.79 3.71
1797 6938 0.317160 ACACCATTGACGAGCTCGAA 59.683 50.000 40.58 26.00 43.02 3.71
1887 7031 2.601666 ACCGAGCAGCTGGTCTCA 60.602 61.111 35.49 0.00 40.17 3.27
2156 7307 3.003173 CCTCGAGGCCACCAAGGA 61.003 66.667 20.67 0.00 41.22 3.36
2265 7416 1.838846 GATGATGGAGGGGCTCGGA 60.839 63.158 0.00 0.00 0.00 4.55
2394 7545 1.596934 GGAGGTGGTTGATGCGAGA 59.403 57.895 0.00 0.00 0.00 4.04
2421 7572 2.472029 GAGGTGATGGGAGGAGAAGAA 58.528 52.381 0.00 0.00 0.00 2.52
2699 7864 5.705400 CCTTCTACCATTTACCCATGGAAT 58.295 41.667 15.22 1.75 46.18 3.01
2835 8028 6.715280 AGTTGATGGAATCTAGAGAAAGCAA 58.285 36.000 0.00 0.00 45.81 3.91
2895 8095 3.007074 TGAATGCAATGCACAACCTGAAT 59.993 39.130 11.23 0.00 43.04 2.57
2904 8104 4.650734 TGCACAACCTGAATATCAACAGA 58.349 39.130 0.00 0.00 36.38 3.41
2962 8162 5.264395 TCAGTGTTGAGAGATATCTGGTGA 58.736 41.667 10.74 0.00 0.00 4.02
2968 8168 3.230134 GAGAGATATCTGGTGACTGGCT 58.770 50.000 10.74 0.00 0.00 4.75
2969 8169 4.141158 TGAGAGATATCTGGTGACTGGCTA 60.141 45.833 10.74 0.00 0.00 3.93
2970 8170 4.406456 AGAGATATCTGGTGACTGGCTAG 58.594 47.826 10.74 0.00 0.00 3.42
2971 8171 2.896685 AGATATCTGGTGACTGGCTAGC 59.103 50.000 6.04 6.04 0.00 3.42
2972 8172 2.461300 TATCTGGTGACTGGCTAGCT 57.539 50.000 15.72 0.00 0.00 3.32
2973 8173 0.829333 ATCTGGTGACTGGCTAGCTG 59.171 55.000 15.72 10.51 0.00 4.24
2974 8174 1.449246 CTGGTGACTGGCTAGCTGC 60.449 63.158 15.72 0.00 41.94 5.25
2975 8175 2.176314 CTGGTGACTGGCTAGCTGCA 62.176 60.000 15.72 3.94 45.15 4.41
2976 8176 1.743252 GGTGACTGGCTAGCTGCAC 60.743 63.158 15.72 15.95 45.15 4.57
2977 8177 1.004560 GTGACTGGCTAGCTGCACA 60.005 57.895 15.72 7.79 45.15 4.57
2978 8178 1.004560 TGACTGGCTAGCTGCACAC 60.005 57.895 15.72 0.00 45.15 3.82
2979 8179 1.004560 GACTGGCTAGCTGCACACA 60.005 57.895 15.72 1.56 45.15 3.72
2980 8180 0.392193 GACTGGCTAGCTGCACACAT 60.392 55.000 15.72 0.00 45.15 3.21
2981 8181 0.392193 ACTGGCTAGCTGCACACATC 60.392 55.000 15.72 0.00 45.15 3.06
2982 8182 0.392060 CTGGCTAGCTGCACACATCA 60.392 55.000 15.72 0.00 45.15 3.07
2983 8183 0.392060 TGGCTAGCTGCACACATCAG 60.392 55.000 15.72 0.00 45.15 2.90
2984 8184 0.392193 GGCTAGCTGCACACATCAGT 60.392 55.000 15.72 0.00 45.15 3.41
2985 8185 2.603726 GGCTAGCTGCACACATCAGTG 61.604 57.143 15.72 0.00 45.15 3.66
2999 8199 6.161911 CACATCAGTGTTCAGACTATTGTG 57.838 41.667 0.00 0.00 40.92 3.33
3000 8200 5.698089 CACATCAGTGTTCAGACTATTGTGT 59.302 40.000 9.02 0.00 40.92 3.72
3001 8201 5.698089 ACATCAGTGTTCAGACTATTGTGTG 59.302 40.000 0.00 0.00 38.63 3.82
3002 8202 4.631131 TCAGTGTTCAGACTATTGTGTGG 58.369 43.478 4.70 0.00 37.94 4.17
3003 8203 4.100963 TCAGTGTTCAGACTATTGTGTGGT 59.899 41.667 4.70 0.00 37.94 4.16
3004 8204 4.212004 CAGTGTTCAGACTATTGTGTGGTG 59.788 45.833 4.70 0.00 37.94 4.17
3005 8205 4.127171 GTGTTCAGACTATTGTGTGGTGT 58.873 43.478 4.70 0.00 37.94 4.16
3006 8206 4.024893 GTGTTCAGACTATTGTGTGGTGTG 60.025 45.833 4.70 0.00 37.94 3.82
3007 8207 3.401033 TCAGACTATTGTGTGGTGTGG 57.599 47.619 4.70 0.00 37.94 4.17
3008 8208 2.703536 TCAGACTATTGTGTGGTGTGGT 59.296 45.455 4.70 0.00 37.94 4.16
3009 8209 3.135712 TCAGACTATTGTGTGGTGTGGTT 59.864 43.478 4.70 0.00 37.94 3.67
3010 8210 3.882888 CAGACTATTGTGTGGTGTGGTTT 59.117 43.478 0.00 0.00 34.29 3.27
3011 8211 4.024048 CAGACTATTGTGTGGTGTGGTTTC 60.024 45.833 0.00 0.00 34.29 2.78
3012 8212 3.880490 GACTATTGTGTGGTGTGGTTTCA 59.120 43.478 0.00 0.00 0.00 2.69
3013 8213 3.882888 ACTATTGTGTGGTGTGGTTTCAG 59.117 43.478 0.00 0.00 0.00 3.02
3014 8214 2.208132 TTGTGTGGTGTGGTTTCAGT 57.792 45.000 0.00 0.00 0.00 3.41
3015 8215 1.458398 TGTGTGGTGTGGTTTCAGTG 58.542 50.000 0.00 0.00 0.00 3.66
3016 8216 1.271652 TGTGTGGTGTGGTTTCAGTGT 60.272 47.619 0.00 0.00 0.00 3.55
3017 8217 1.816224 GTGTGGTGTGGTTTCAGTGTT 59.184 47.619 0.00 0.00 0.00 3.32
3018 8218 1.815613 TGTGGTGTGGTTTCAGTGTTG 59.184 47.619 0.00 0.00 0.00 3.33
3019 8219 2.088423 GTGGTGTGGTTTCAGTGTTGA 58.912 47.619 0.00 0.00 0.00 3.18
3020 8220 2.097466 GTGGTGTGGTTTCAGTGTTGAG 59.903 50.000 0.00 0.00 34.15 3.02
3021 8221 2.026729 TGGTGTGGTTTCAGTGTTGAGA 60.027 45.455 0.00 0.00 34.15 3.27
3022 8222 2.614057 GGTGTGGTTTCAGTGTTGAGAG 59.386 50.000 0.00 0.00 34.15 3.20
3023 8223 3.531538 GTGTGGTTTCAGTGTTGAGAGA 58.468 45.455 0.00 0.00 34.15 3.10
3024 8224 4.130118 GTGTGGTTTCAGTGTTGAGAGAT 58.870 43.478 0.00 0.00 34.15 2.75
3025 8225 5.297547 GTGTGGTTTCAGTGTTGAGAGATA 58.702 41.667 0.00 0.00 34.15 1.98
3026 8226 5.934625 GTGTGGTTTCAGTGTTGAGAGATAT 59.065 40.000 0.00 0.00 34.15 1.63
3027 8227 6.091441 GTGTGGTTTCAGTGTTGAGAGATATC 59.909 42.308 0.00 0.00 34.15 1.63
3028 8228 6.014242 TGTGGTTTCAGTGTTGAGAGATATCT 60.014 38.462 4.47 4.47 34.15 1.98
3029 8229 6.312426 GTGGTTTCAGTGTTGAGAGATATCTG 59.688 42.308 10.74 0.00 34.15 2.90
3030 8230 5.814705 GGTTTCAGTGTTGAGAGATATCTGG 59.185 44.000 10.74 0.00 34.15 3.86
3031 8231 6.402222 GTTTCAGTGTTGAGAGATATCTGGT 58.598 40.000 10.74 0.00 34.15 4.00
3032 8232 5.588958 TCAGTGTTGAGAGATATCTGGTG 57.411 43.478 10.74 0.00 0.00 4.17
3033 8233 5.264395 TCAGTGTTGAGAGATATCTGGTGA 58.736 41.667 10.74 0.00 0.00 4.02
3034 8234 5.126222 TCAGTGTTGAGAGATATCTGGTGAC 59.874 44.000 10.74 4.65 0.00 3.67
3035 8235 5.126869 CAGTGTTGAGAGATATCTGGTGACT 59.873 44.000 10.74 0.00 0.00 3.41
3036 8236 5.126869 AGTGTTGAGAGATATCTGGTGACTG 59.873 44.000 10.74 0.00 0.00 3.51
3037 8237 4.403752 TGTTGAGAGATATCTGGTGACTGG 59.596 45.833 10.74 0.00 0.00 4.00
3038 8238 2.961741 TGAGAGATATCTGGTGACTGGC 59.038 50.000 10.74 0.00 0.00 4.85
3039 8239 3.230134 GAGAGATATCTGGTGACTGGCT 58.770 50.000 10.74 0.00 0.00 4.75
3040 8240 4.141158 TGAGAGATATCTGGTGACTGGCTA 60.141 45.833 10.74 0.00 0.00 3.93
3041 8241 4.406456 AGAGATATCTGGTGACTGGCTAG 58.594 47.826 10.74 0.00 0.00 3.42
3042 8242 2.896685 AGATATCTGGTGACTGGCTAGC 59.103 50.000 6.04 6.04 0.00 3.42
3076 8276 5.506151 CGCCAATATTCATGCAGCTTAAGAA 60.506 40.000 6.67 0.00 0.00 2.52
3086 8286 7.656412 TCATGCAGCTTAAGAAACAACATAAA 58.344 30.769 6.67 0.00 0.00 1.40
3088 8288 7.692908 TGCAGCTTAAGAAACAACATAAAAC 57.307 32.000 6.67 0.00 0.00 2.43
3142 8342 3.201045 TGCATTTACCTACTGCCATACCA 59.799 43.478 0.00 0.00 35.02 3.25
3161 8381 0.242825 AGCGATTGACGAAGGACGAA 59.757 50.000 0.00 0.00 45.77 3.85
3162 8382 1.135083 AGCGATTGACGAAGGACGAAT 60.135 47.619 0.00 0.00 45.77 3.34
3166 8386 4.348656 CGATTGACGAAGGACGAATCTTA 58.651 43.478 0.00 0.00 45.77 2.10
3178 8398 1.257936 CGAATCTTATGGAACGGTGCG 59.742 52.381 0.00 0.00 0.00 5.34
3179 8399 2.546778 GAATCTTATGGAACGGTGCGA 58.453 47.619 0.00 0.00 0.00 5.10
3180 8400 2.225068 ATCTTATGGAACGGTGCGAG 57.775 50.000 0.00 0.00 0.00 5.03
3312 8537 8.272889 ACAGTAGATCAGACAGGTATGTAACTA 58.727 37.037 0.00 0.00 40.68 2.24
3353 8589 7.772332 AGTATGTTACTACATTAAGCTGCAC 57.228 36.000 1.02 0.00 42.29 4.57
3359 8618 4.253685 ACTACATTAAGCTGCACACGAAT 58.746 39.130 1.02 0.00 0.00 3.34
3455 8714 6.213600 TCTGTACAGGAAAATTTAGCCTCTCT 59.786 38.462 22.48 0.34 0.00 3.10
3456 8715 6.407202 TGTACAGGAAAATTTAGCCTCTCTC 58.593 40.000 9.03 3.32 0.00 3.20
3478 8737 5.360591 TCGGCTCTCTAAAATGGAGAATTC 58.639 41.667 0.00 0.00 39.04 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.023513 GCTCACCAGGCTGCTGTAAG 61.024 60.000 9.56 1.55 0.00 2.34
22 23 1.003355 GCTCACCAGGCTGCTGTAA 60.003 57.895 9.56 0.00 0.00 2.41
23 24 1.483595 AAGCTCACCAGGCTGCTGTA 61.484 55.000 9.56 0.00 40.19 2.74
25 26 1.023513 GTAAGCTCACCAGGCTGCTG 61.024 60.000 9.56 6.17 40.19 4.41
26 27 1.197430 AGTAAGCTCACCAGGCTGCT 61.197 55.000 9.56 0.00 40.19 4.24
27 28 1.023513 CAGTAAGCTCACCAGGCTGC 61.024 60.000 9.56 0.00 40.19 5.25
29 30 1.298014 GCAGTAAGCTCACCAGGCT 59.702 57.895 0.00 0.00 42.31 4.58
30 31 1.746991 GGCAGTAAGCTCACCAGGC 60.747 63.158 0.00 0.00 44.79 4.85
31 32 1.448540 CGGCAGTAAGCTCACCAGG 60.449 63.158 0.00 0.00 44.79 4.45
33 34 1.911269 TCCGGCAGTAAGCTCACCA 60.911 57.895 0.00 0.00 44.79 4.17
34 35 1.448013 GTCCGGCAGTAAGCTCACC 60.448 63.158 0.00 0.00 44.79 4.02
36 37 0.108186 CATGTCCGGCAGTAAGCTCA 60.108 55.000 0.00 0.00 44.79 4.26
37 38 0.811616 CCATGTCCGGCAGTAAGCTC 60.812 60.000 0.00 0.00 44.79 4.09
38 39 1.221840 CCATGTCCGGCAGTAAGCT 59.778 57.895 0.00 0.00 44.79 3.74
39 40 1.819632 CCCATGTCCGGCAGTAAGC 60.820 63.158 0.00 0.00 44.65 3.09
40 41 0.179073 CTCCCATGTCCGGCAGTAAG 60.179 60.000 0.00 0.00 0.00 2.34
41 42 1.622607 CCTCCCATGTCCGGCAGTAA 61.623 60.000 0.00 0.00 0.00 2.24
42 43 2.063979 CCTCCCATGTCCGGCAGTA 61.064 63.158 0.00 0.00 0.00 2.74
43 44 3.402681 CCTCCCATGTCCGGCAGT 61.403 66.667 0.00 0.00 0.00 4.40
45 46 3.399181 GTCCTCCCATGTCCGGCA 61.399 66.667 0.00 0.00 0.00 5.69
46 47 2.746375 ATGTCCTCCCATGTCCGGC 61.746 63.158 0.00 0.00 0.00 6.13
47 48 1.146930 CATGTCCTCCCATGTCCGG 59.853 63.158 0.00 0.00 37.91 5.14
48 49 4.863707 CATGTCCTCCCATGTCCG 57.136 61.111 0.00 0.00 37.91 4.79
53 54 0.848735 CCCATGACATGTCCTCCCAT 59.151 55.000 22.85 7.26 0.00 4.00
54 55 0.253113 TCCCATGACATGTCCTCCCA 60.253 55.000 22.85 4.96 0.00 4.37
55 56 0.918983 TTCCCATGACATGTCCTCCC 59.081 55.000 22.85 0.00 0.00 4.30
57 58 2.009774 CGTTTCCCATGACATGTCCTC 58.990 52.381 22.85 0.00 0.00 3.71
61 62 0.965363 GCCCGTTTCCCATGACATGT 60.965 55.000 14.26 0.00 0.00 3.21
63 64 0.394352 GAGCCCGTTTCCCATGACAT 60.394 55.000 0.00 0.00 0.00 3.06
64 65 1.002624 GAGCCCGTTTCCCATGACA 60.003 57.895 0.00 0.00 0.00 3.58
65 66 1.749258 GGAGCCCGTTTCCCATGAC 60.749 63.158 0.00 0.00 0.00 3.06
66 67 2.674754 GGAGCCCGTTTCCCATGA 59.325 61.111 0.00 0.00 0.00 3.07
89 90 0.878961 CACCTAGTTTATCGCCGGCC 60.879 60.000 23.46 5.24 0.00 6.13
90 91 0.103572 TCACCTAGTTTATCGCCGGC 59.896 55.000 19.07 19.07 0.00 6.13
91 92 1.679680 TCTCACCTAGTTTATCGCCGG 59.320 52.381 0.00 0.00 0.00 6.13
92 93 3.114065 GTTCTCACCTAGTTTATCGCCG 58.886 50.000 0.00 0.00 0.00 6.46
94 95 3.552294 GCTGTTCTCACCTAGTTTATCGC 59.448 47.826 0.00 0.00 0.00 4.58
96 97 5.346181 AGGCTGTTCTCACCTAGTTTATC 57.654 43.478 0.00 0.00 29.98 1.75
97 98 6.472686 CTAGGCTGTTCTCACCTAGTTTAT 57.527 41.667 0.00 0.00 45.36 1.40
98 99 5.916661 CTAGGCTGTTCTCACCTAGTTTA 57.083 43.478 0.00 0.00 45.36 2.01
99 100 4.810191 CTAGGCTGTTCTCACCTAGTTT 57.190 45.455 0.00 0.00 45.36 2.66
103 104 1.007238 AGGCTAGGCTGTTCTCACCTA 59.993 52.381 19.53 0.00 34.92 3.08
104 105 0.252467 AGGCTAGGCTGTTCTCACCT 60.252 55.000 19.53 0.00 37.61 4.00
105 106 1.410882 CTAGGCTAGGCTGTTCTCACC 59.589 57.143 27.95 0.00 0.00 4.02
107 108 2.024846 AGACTAGGCTAGGCTGTTCTCA 60.025 50.000 28.88 6.55 44.20 3.27
109 110 2.838637 AGACTAGGCTAGGCTGTTCT 57.161 50.000 28.88 23.29 44.20 3.01
115 116 3.692690 ACTATAGCAGACTAGGCTAGGC 58.307 50.000 24.57 22.52 46.10 3.93
117 118 6.657541 AGCTAAACTATAGCAGACTAGGCTAG 59.342 42.308 19.83 19.83 46.10 3.42
119 120 5.242838 CAGCTAAACTATAGCAGACTAGGCT 59.757 44.000 9.85 0.00 45.18 4.58
120 121 5.241949 TCAGCTAAACTATAGCAGACTAGGC 59.758 44.000 9.85 0.00 42.68 3.93
124 125 9.703892 CATATTTCAGCTAAACTATAGCAGACT 57.296 33.333 9.85 1.30 42.68 3.24
125 126 9.482627 ACATATTTCAGCTAAACTATAGCAGAC 57.517 33.333 9.85 0.00 42.68 3.51
128 129 8.978539 CGAACATATTTCAGCTAAACTATAGCA 58.021 33.333 9.85 0.00 42.68 3.49
129 130 9.193133 TCGAACATATTTCAGCTAAACTATAGC 57.807 33.333 0.00 0.00 40.67 2.97
134 135 8.730680 ACATTTCGAACATATTTCAGCTAAACT 58.269 29.630 0.00 0.00 0.00 2.66
140 141 8.745837 CCATTTACATTTCGAACATATTTCAGC 58.254 33.333 0.00 0.00 0.00 4.26
141 142 9.787532 ACCATTTACATTTCGAACATATTTCAG 57.212 29.630 0.00 0.00 0.00 3.02
195 5249 4.379652 ACCAAACAGAATTCATGCAAACC 58.620 39.130 8.44 0.00 0.00 3.27
217 5271 9.598517 AAACATTTCAGAGCAGATTTTAACAAA 57.401 25.926 0.00 0.00 0.00 2.83
229 5283 1.340889 GCCCACAAACATTTCAGAGCA 59.659 47.619 0.00 0.00 0.00 4.26
237 5291 0.103937 CAACCGTGCCCACAAACATT 59.896 50.000 0.00 0.00 0.00 2.71
247 5301 4.740822 AGGCCATCCAACCGTGCC 62.741 66.667 5.01 0.00 42.48 5.01
248 5302 3.443045 CAGGCCATCCAACCGTGC 61.443 66.667 5.01 0.00 33.74 5.34
283 5345 2.030562 CGTCACTGTGGTGGGGAC 59.969 66.667 8.11 0.00 43.17 4.46
293 5355 2.163818 TTTTGGTAGCTCCGTCACTG 57.836 50.000 0.00 0.00 39.52 3.66
319 5382 2.025699 TGTTTTACTATCAGGCCCACCC 60.026 50.000 0.00 0.00 36.11 4.61
412 5477 0.179018 AAAGACCATATGGCCCGCTC 60.179 55.000 22.18 11.19 39.32 5.03
413 5478 0.258774 AAAAGACCATATGGCCCGCT 59.741 50.000 22.18 10.98 39.32 5.52
423 5488 2.299326 AGCAAGGCTGAAAAGACCAT 57.701 45.000 0.00 0.00 37.57 3.55
424 5489 3.827505 AGCAAGGCTGAAAAGACCA 57.172 47.368 0.00 0.00 37.57 4.02
464 5529 2.025727 GTATCCGTCCGCTGACCG 59.974 66.667 2.40 0.00 38.32 4.79
482 5547 0.801872 TGATTGCCAAATCGGACACG 59.198 50.000 0.00 0.00 44.47 4.49
483 5548 2.030363 TGTTGATTGCCAAATCGGACAC 60.030 45.455 0.00 0.00 44.47 3.67
487 5552 2.931325 CCAATGTTGATTGCCAAATCGG 59.069 45.455 0.00 0.00 44.47 4.18
494 5559 2.482490 GGCATCTCCAATGTTGATTGCC 60.482 50.000 0.00 0.00 38.14 4.52
496 5561 3.028850 AGGGCATCTCCAATGTTGATTG 58.971 45.455 0.00 0.00 39.04 2.67
497 5562 3.393426 AGGGCATCTCCAATGTTGATT 57.607 42.857 0.00 0.00 36.21 2.57
500 5565 3.624777 ACTAAGGGCATCTCCAATGTTG 58.375 45.455 0.00 0.00 36.21 3.33
520 5585 6.603599 AGGGGAAGCTTCATTTTATAACTGAC 59.396 38.462 27.02 5.04 0.00 3.51
532 5597 1.618074 GCTGGAAAGGGGAAGCTTCAT 60.618 52.381 27.02 10.27 32.82 2.57
560 5625 5.300539 GGGAAGCTTCACTTTTTCTCTTTCT 59.699 40.000 27.02 0.00 39.29 2.52
561 5626 5.524284 GGGAAGCTTCACTTTTTCTCTTTC 58.476 41.667 27.02 5.04 39.29 2.62
593 5658 7.342026 ACTTGAAGTCTTTTATCAGGGTTTTGT 59.658 33.333 0.00 0.00 0.00 2.83
594 5659 7.649306 CACTTGAAGTCTTTTATCAGGGTTTTG 59.351 37.037 0.00 0.00 0.00 2.44
597 5662 6.601332 TCACTTGAAGTCTTTTATCAGGGTT 58.399 36.000 0.00 0.00 0.00 4.11
598 5663 6.187727 TCACTTGAAGTCTTTTATCAGGGT 57.812 37.500 0.00 0.00 0.00 4.34
628 5693 0.535335 CCTACGCAACTGGCTTCCTA 59.465 55.000 0.00 0.00 41.67 2.94
641 5706 3.234386 GTGCATTTTTGACTTCCTACGC 58.766 45.455 0.00 0.00 0.00 4.42
642 5707 3.479006 CGTGCATTTTTGACTTCCTACG 58.521 45.455 0.00 0.00 0.00 3.51
643 5708 3.234386 GCGTGCATTTTTGACTTCCTAC 58.766 45.455 0.00 0.00 0.00 3.18
644 5709 2.095969 CGCGTGCATTTTTGACTTCCTA 60.096 45.455 0.00 0.00 0.00 2.94
645 5710 1.334960 CGCGTGCATTTTTGACTTCCT 60.335 47.619 0.00 0.00 0.00 3.36
646 5711 1.052287 CGCGTGCATTTTTGACTTCC 58.948 50.000 0.00 0.00 0.00 3.46
647 5712 0.430858 GCGCGTGCATTTTTGACTTC 59.569 50.000 17.66 0.00 42.15 3.01
648 5713 0.030638 AGCGCGTGCATTTTTGACTT 59.969 45.000 24.79 0.00 46.23 3.01
649 5714 0.030638 AAGCGCGTGCATTTTTGACT 59.969 45.000 24.79 0.00 46.23 3.41
650 5715 1.680668 TAAGCGCGTGCATTTTTGAC 58.319 45.000 24.79 0.00 46.23 3.18
651 5716 2.514902 GATAAGCGCGTGCATTTTTGA 58.485 42.857 24.79 0.00 46.23 2.69
652 5717 1.583404 GGATAAGCGCGTGCATTTTTG 59.417 47.619 24.79 0.00 46.23 2.44
653 5718 1.793714 CGGATAAGCGCGTGCATTTTT 60.794 47.619 24.79 11.07 46.23 1.94
654 5719 0.248054 CGGATAAGCGCGTGCATTTT 60.248 50.000 24.79 11.46 46.23 1.82
655 5720 1.351707 CGGATAAGCGCGTGCATTT 59.648 52.632 24.79 12.23 46.23 2.32
656 5721 3.014036 CGGATAAGCGCGTGCATT 58.986 55.556 24.79 16.09 46.23 3.56
657 5722 2.693250 TAGCGGATAAGCGCGTGCAT 62.693 55.000 24.79 14.65 46.23 3.96
658 5723 2.693250 ATAGCGGATAAGCGCGTGCA 62.693 55.000 24.79 3.03 46.23 4.57
659 5724 1.945776 GATAGCGGATAAGCGCGTGC 61.946 60.000 14.39 14.39 43.00 5.34
660 5725 0.663269 TGATAGCGGATAAGCGCGTG 60.663 55.000 8.43 0.00 43.00 5.34
661 5726 0.663568 GTGATAGCGGATAAGCGCGT 60.664 55.000 8.43 0.00 43.00 6.01
662 5727 1.665544 CGTGATAGCGGATAAGCGCG 61.666 60.000 0.00 0.00 43.00 6.86
663 5728 1.945776 GCGTGATAGCGGATAAGCGC 61.946 60.000 0.00 0.00 43.00 5.92
664 5729 0.387367 AGCGTGATAGCGGATAAGCG 60.387 55.000 0.00 0.00 43.00 4.68
665 5730 2.631418 TAGCGTGATAGCGGATAAGC 57.369 50.000 0.00 0.00 43.00 3.09
666 5731 4.142578 ACTCATAGCGTGATAGCGGATAAG 60.143 45.833 0.00 0.00 43.00 1.73
667 5732 3.756963 ACTCATAGCGTGATAGCGGATAA 59.243 43.478 0.00 0.00 43.00 1.75
668 5733 3.344515 ACTCATAGCGTGATAGCGGATA 58.655 45.455 0.00 0.00 43.00 2.59
669 5734 2.163509 ACTCATAGCGTGATAGCGGAT 58.836 47.619 0.00 0.00 43.00 4.18
670 5735 1.605753 ACTCATAGCGTGATAGCGGA 58.394 50.000 0.00 0.00 43.00 5.54
671 5736 2.054363 CAACTCATAGCGTGATAGCGG 58.946 52.381 0.00 0.00 43.00 5.52
672 5737 2.469147 CACAACTCATAGCGTGATAGCG 59.531 50.000 0.00 0.00 43.00 4.26
673 5738 3.243877 CACACAACTCATAGCGTGATAGC 59.756 47.826 0.00 0.00 35.97 2.97
674 5739 3.798878 CCACACAACTCATAGCGTGATAG 59.201 47.826 0.00 0.00 35.97 2.08
675 5740 3.430236 CCCACACAACTCATAGCGTGATA 60.430 47.826 0.00 0.00 35.97 2.15
676 5741 2.621338 CCACACAACTCATAGCGTGAT 58.379 47.619 0.00 0.00 35.97 3.06
677 5742 1.337728 CCCACACAACTCATAGCGTGA 60.338 52.381 0.00 0.00 33.56 4.35
678 5743 1.078709 CCCACACAACTCATAGCGTG 58.921 55.000 0.00 0.00 35.48 5.34
679 5744 0.973632 TCCCACACAACTCATAGCGT 59.026 50.000 0.00 0.00 0.00 5.07
680 5745 2.002586 CTTCCCACACAACTCATAGCG 58.997 52.381 0.00 0.00 0.00 4.26
681 5746 3.003480 GACTTCCCACACAACTCATAGC 58.997 50.000 0.00 0.00 0.00 2.97
682 5747 4.248859 CTGACTTCCCACACAACTCATAG 58.751 47.826 0.00 0.00 0.00 2.23
683 5748 3.646162 ACTGACTTCCCACACAACTCATA 59.354 43.478 0.00 0.00 0.00 2.15
684 5749 2.439507 ACTGACTTCCCACACAACTCAT 59.560 45.455 0.00 0.00 0.00 2.90
685 5750 1.837439 ACTGACTTCCCACACAACTCA 59.163 47.619 0.00 0.00 0.00 3.41
686 5751 2.484889 GACTGACTTCCCACACAACTC 58.515 52.381 0.00 0.00 0.00 3.01
687 5752 1.202533 CGACTGACTTCCCACACAACT 60.203 52.381 0.00 0.00 0.00 3.16
688 5753 1.217882 CGACTGACTTCCCACACAAC 58.782 55.000 0.00 0.00 0.00 3.32
689 5754 0.828022 ACGACTGACTTCCCACACAA 59.172 50.000 0.00 0.00 0.00 3.33
690 5755 0.387929 GACGACTGACTTCCCACACA 59.612 55.000 0.00 0.00 0.00 3.72
691 5756 0.674534 AGACGACTGACTTCCCACAC 59.325 55.000 0.00 0.00 0.00 3.82
692 5757 0.959553 GAGACGACTGACTTCCCACA 59.040 55.000 0.00 0.00 0.00 4.17
693 5758 1.249407 AGAGACGACTGACTTCCCAC 58.751 55.000 0.00 0.00 0.00 4.61
694 5759 2.434428 GTAGAGACGACTGACTTCCCA 58.566 52.381 0.00 0.00 0.00 4.37
707 5772 8.399425 TCATTTGAGAAGACTAATCGTAGAGAC 58.601 37.037 0.00 0.00 43.63 3.36
708 5773 8.507524 TCATTTGAGAAGACTAATCGTAGAGA 57.492 34.615 0.00 0.00 43.63 3.10
709 5774 9.232082 CTTCATTTGAGAAGACTAATCGTAGAG 57.768 37.037 0.00 0.00 46.18 2.43
710 5775 7.702772 GCTTCATTTGAGAAGACTAATCGTAGA 59.297 37.037 7.81 0.00 46.18 2.59
711 5776 7.704472 AGCTTCATTTGAGAAGACTAATCGTAG 59.296 37.037 7.81 0.00 46.18 3.51
726 5791 4.414852 GGTACGTACGTAGCTTCATTTGA 58.585 43.478 37.20 11.94 43.38 2.69
727 5792 3.549070 GGGTACGTACGTAGCTTCATTTG 59.451 47.826 40.08 5.89 45.28 2.32
729 5794 2.754552 TGGGTACGTACGTAGCTTCATT 59.245 45.455 40.08 14.47 45.28 2.57
731 5796 1.819928 TGGGTACGTACGTAGCTTCA 58.180 50.000 40.08 31.79 45.28 3.02
734 5799 0.383231 GCATGGGTACGTACGTAGCT 59.617 55.000 40.08 27.34 45.28 3.32
735 5800 0.101040 TGCATGGGTACGTACGTAGC 59.899 55.000 37.03 37.03 45.24 3.58
736 5801 1.862815 GCTGCATGGGTACGTACGTAG 60.863 57.143 27.48 16.15 0.00 3.51
737 5802 0.101040 GCTGCATGGGTACGTACGTA 59.899 55.000 23.60 23.60 0.00 3.57
738 5803 1.153706 GCTGCATGGGTACGTACGT 60.154 57.895 25.98 25.98 0.00 3.57
740 5805 0.937304 CATGCTGCATGGGTACGTAC 59.063 55.000 30.12 17.56 38.11 3.67
741 5806 0.539518 ACATGCTGCATGGGTACGTA 59.460 50.000 37.16 0.00 45.16 3.57
743 5808 1.439353 GGACATGCTGCATGGGTACG 61.439 60.000 37.16 18.21 45.16 3.67
744 5809 1.439353 CGGACATGCTGCATGGGTAC 61.439 60.000 37.16 25.93 45.16 3.34
745 5810 1.153188 CGGACATGCTGCATGGGTA 60.153 57.895 37.16 2.39 45.16 3.69
746 5811 2.438975 CGGACATGCTGCATGGGT 60.439 61.111 37.16 23.04 45.16 4.51
747 5812 1.597797 AAACGGACATGCTGCATGGG 61.598 55.000 37.16 28.60 45.16 4.00
748 5813 0.179156 GAAACGGACATGCTGCATGG 60.179 55.000 37.16 25.35 45.16 3.66
749 5814 0.522626 TGAAACGGACATGCTGCATG 59.477 50.000 34.28 34.28 46.18 4.06
750 5815 0.806868 CTGAAACGGACATGCTGCAT 59.193 50.000 9.81 9.81 0.00 3.96
751 5816 0.250252 TCTGAAACGGACATGCTGCA 60.250 50.000 4.13 4.13 0.00 4.41
752 5817 0.874390 TTCTGAAACGGACATGCTGC 59.126 50.000 0.00 0.00 0.00 5.25
753 5818 3.837213 ATTTCTGAAACGGACATGCTG 57.163 42.857 4.73 0.00 0.00 4.41
754 5819 4.520492 AGAAATTTCTGAAACGGACATGCT 59.480 37.500 19.86 0.00 35.89 3.79
755 5820 4.798574 AGAAATTTCTGAAACGGACATGC 58.201 39.130 19.86 0.00 35.89 4.06
756 5821 8.970691 ATTTAGAAATTTCTGAAACGGACATG 57.029 30.769 27.37 0.00 36.55 3.21
797 5862 2.930682 GCAAAGTTCGTCCCATAGTCTC 59.069 50.000 0.00 0.00 0.00 3.36
801 5866 1.737793 GGTGCAAAGTTCGTCCCATAG 59.262 52.381 0.00 0.00 0.00 2.23
805 5870 0.953960 ATCGGTGCAAAGTTCGTCCC 60.954 55.000 0.00 0.00 0.00 4.46
807 5872 2.735134 ACTAATCGGTGCAAAGTTCGTC 59.265 45.455 0.00 0.00 0.00 4.20
808 5873 2.735134 GACTAATCGGTGCAAAGTTCGT 59.265 45.455 0.00 0.00 0.00 3.85
809 5874 2.993899 AGACTAATCGGTGCAAAGTTCG 59.006 45.455 0.00 0.00 0.00 3.95
810 5875 4.142881 GGAAGACTAATCGGTGCAAAGTTC 60.143 45.833 0.00 0.00 0.00 3.01
811 5876 3.751698 GGAAGACTAATCGGTGCAAAGTT 59.248 43.478 0.00 0.00 0.00 2.66
812 5877 3.335579 GGAAGACTAATCGGTGCAAAGT 58.664 45.455 0.00 0.00 0.00 2.66
813 5878 2.348666 CGGAAGACTAATCGGTGCAAAG 59.651 50.000 0.00 0.00 0.00 2.77
815 5880 2.004583 CGGAAGACTAATCGGTGCAA 57.995 50.000 0.00 0.00 0.00 4.08
816 5881 0.459585 GCGGAAGACTAATCGGTGCA 60.460 55.000 0.00 0.00 0.00 4.57
817 5882 0.459585 TGCGGAAGACTAATCGGTGC 60.460 55.000 0.00 0.00 0.00 5.01
818 5883 1.860950 CATGCGGAAGACTAATCGGTG 59.139 52.381 0.00 0.00 0.00 4.94
819 5884 1.480954 ACATGCGGAAGACTAATCGGT 59.519 47.619 0.00 0.00 0.00 4.69
820 5885 1.860950 CACATGCGGAAGACTAATCGG 59.139 52.381 0.00 0.00 0.00 4.18
821 5886 2.535984 GTCACATGCGGAAGACTAATCG 59.464 50.000 0.00 0.00 0.00 3.34
822 5887 3.786635 AGTCACATGCGGAAGACTAATC 58.213 45.455 7.98 0.00 39.40 1.75
823 5888 3.895232 AGTCACATGCGGAAGACTAAT 57.105 42.857 7.98 0.00 39.40 1.73
824 5889 3.678056 AAGTCACATGCGGAAGACTAA 57.322 42.857 9.70 0.00 40.22 2.24
825 5890 3.006430 TCAAAGTCACATGCGGAAGACTA 59.994 43.478 9.70 0.00 40.22 2.59
826 5891 2.146342 CAAAGTCACATGCGGAAGACT 58.854 47.619 4.61 4.61 42.72 3.24
827 5892 2.143122 TCAAAGTCACATGCGGAAGAC 58.857 47.619 0.00 0.39 0.00 3.01
828 5893 2.542020 TCAAAGTCACATGCGGAAGA 57.458 45.000 0.00 0.00 0.00 2.87
829 5894 2.662791 CGTTCAAAGTCACATGCGGAAG 60.663 50.000 0.00 0.00 0.00 3.46
830 5895 1.262950 CGTTCAAAGTCACATGCGGAA 59.737 47.619 0.00 0.00 0.00 4.30
831 5896 0.865111 CGTTCAAAGTCACATGCGGA 59.135 50.000 0.00 0.00 0.00 5.54
832 5897 0.110238 CCGTTCAAAGTCACATGCGG 60.110 55.000 0.00 0.00 0.00 5.69
833 5898 0.586319 ACCGTTCAAAGTCACATGCG 59.414 50.000 0.00 0.00 0.00 4.73
834 5899 1.333619 ACACCGTTCAAAGTCACATGC 59.666 47.619 0.00 0.00 0.00 4.06
835 5900 2.611751 TCACACCGTTCAAAGTCACATG 59.388 45.455 0.00 0.00 0.00 3.21
836 5901 2.872245 CTCACACCGTTCAAAGTCACAT 59.128 45.455 0.00 0.00 0.00 3.21
853 5918 0.593128 ATTGTGCGCTTTGGACTCAC 59.407 50.000 9.73 0.00 40.08 3.51
915 5980 2.539547 GCAATGTCACGGTGCATATGTC 60.540 50.000 15.11 0.00 38.19 3.06
916 5981 1.401552 GCAATGTCACGGTGCATATGT 59.598 47.619 15.11 2.06 38.19 2.29
917 5982 1.268692 GGCAATGTCACGGTGCATATG 60.269 52.381 15.11 14.98 40.12 1.78
950 6015 3.075882 TGTGGGAGAAAATGTGGGATCTT 59.924 43.478 0.00 0.00 0.00 2.40
955 6020 3.727726 GTTTTGTGGGAGAAAATGTGGG 58.272 45.455 0.00 0.00 0.00 4.61
958 6023 2.542824 CGCGTTTTGTGGGAGAAAATGT 60.543 45.455 0.00 0.00 33.59 2.71
979 6044 1.320852 GTCGTCGCCTCGAGAAATTTC 59.679 52.381 15.71 10.33 40.52 2.17
1010 6075 2.734673 GCGTGCAGCTTCTTCTCGG 61.735 63.158 0.00 0.00 44.04 4.63
1113 6178 1.321474 ACTCGGTGTTGACGAAGGTA 58.679 50.000 0.00 0.00 40.16 3.08
1524 6598 2.570169 CACGTATTCCAAACTTGCACG 58.430 47.619 0.00 0.00 0.00 5.34
1527 6601 1.539827 AGGCACGTATTCCAAACTTGC 59.460 47.619 0.00 0.00 40.34 4.01
1528 6602 3.181510 GCTAGGCACGTATTCCAAACTTG 60.182 47.826 0.00 0.00 0.00 3.16
1529 6603 3.007635 GCTAGGCACGTATTCCAAACTT 58.992 45.455 0.00 0.00 0.00 2.66
1533 6607 1.742411 GCTGCTAGGCACGTATTCCAA 60.742 52.381 0.00 0.00 33.79 3.53
1534 6608 0.179084 GCTGCTAGGCACGTATTCCA 60.179 55.000 0.00 0.00 33.79 3.53
1535 6609 0.880718 GGCTGCTAGGCACGTATTCC 60.881 60.000 0.00 0.00 40.97 3.01
1537 6611 1.904771 TGGCTGCTAGGCACGTATT 59.095 52.632 8.04 0.00 46.47 1.89
1544 6648 1.525535 CAGGACATGGCTGCTAGGC 60.526 63.158 0.00 3.31 41.77 3.93
1552 6664 4.423625 AGTTATACCTTCAGGACATGGC 57.576 45.455 0.00 0.00 38.94 4.40
1582 6720 2.351641 GCTCCTCGTCTGCATAGATCAG 60.352 54.545 0.00 0.00 34.94 2.90
1589 6727 0.390866 CACTTGCTCCTCGTCTGCAT 60.391 55.000 0.00 0.00 36.55 3.96
1590 6728 1.005748 CACTTGCTCCTCGTCTGCA 60.006 57.895 0.00 0.00 34.69 4.41
1657 6795 4.819761 TCGGAGGCGCATGTGCTC 62.820 66.667 28.86 22.23 39.32 4.26
1887 7031 2.270205 CCGCTGCCATCACCTTCT 59.730 61.111 0.00 0.00 0.00 2.85
1980 7130 3.753272 AGTTGACATACACCACAGATTGC 59.247 43.478 0.00 0.00 0.00 3.56
2124 7275 2.120718 AGGAACTCGGGAGGCAGT 59.879 61.111 0.00 0.00 0.00 4.40
2349 7500 1.351017 ACATCGTCACCAACCTCCATT 59.649 47.619 0.00 0.00 0.00 3.16
2388 7539 1.860641 TCACCTCCCTTATTCTCGCA 58.139 50.000 0.00 0.00 0.00 5.10
2394 7545 2.021042 TCCTCCCATCACCTCCCTTATT 60.021 50.000 0.00 0.00 0.00 1.40
2421 7572 2.360854 CCTCCTCATTTCCCTCCCTACT 60.361 54.545 0.00 0.00 0.00 2.57
2452 7603 0.321996 GAAGCGACCTCCTTCCACTT 59.678 55.000 0.00 0.00 34.12 3.16
2668 7819 7.874252 TGGGTAAATGGTAGAAGGCTAAAATA 58.126 34.615 0.00 0.00 0.00 1.40
2699 7864 8.145767 TCGACCTATTTAAACTTGAAAGACAGA 58.854 33.333 0.00 0.00 0.00 3.41
2811 8004 6.305272 TGCTTTCTCTAGATTCCATCAACT 57.695 37.500 0.00 0.00 0.00 3.16
2895 8095 7.547019 GTCTGAACACTGAATCATCTGTTGATA 59.453 37.037 10.15 0.00 44.51 2.15
2904 8104 7.118825 CACACAATAGTCTGAACACTGAATCAT 59.881 37.037 0.00 0.00 0.00 2.45
2962 8162 0.392193 GATGTGTGCAGCTAGCCAGT 60.392 55.000 12.13 0.00 44.83 4.00
2977 8177 5.698089 CACACAATAGTCTGAACACTGATGT 59.302 40.000 0.00 0.00 42.46 3.06
2978 8178 5.121298 CCACACAATAGTCTGAACACTGATG 59.879 44.000 0.00 0.00 0.00 3.07
2979 8179 5.221722 ACCACACAATAGTCTGAACACTGAT 60.222 40.000 0.00 0.00 0.00 2.90
2980 8180 4.100963 ACCACACAATAGTCTGAACACTGA 59.899 41.667 0.00 0.00 0.00 3.41
2981 8181 4.212004 CACCACACAATAGTCTGAACACTG 59.788 45.833 0.00 0.00 0.00 3.66
2982 8182 4.141711 ACACCACACAATAGTCTGAACACT 60.142 41.667 0.00 0.00 0.00 3.55
2983 8183 4.024893 CACACCACACAATAGTCTGAACAC 60.025 45.833 0.00 0.00 0.00 3.32
2984 8184 4.126437 CACACCACACAATAGTCTGAACA 58.874 43.478 0.00 0.00 0.00 3.18
2985 8185 3.498397 CCACACCACACAATAGTCTGAAC 59.502 47.826 0.00 0.00 0.00 3.18
2986 8186 3.135712 ACCACACCACACAATAGTCTGAA 59.864 43.478 0.00 0.00 0.00 3.02
2987 8187 2.703536 ACCACACCACACAATAGTCTGA 59.296 45.455 0.00 0.00 0.00 3.27
2988 8188 3.126001 ACCACACCACACAATAGTCTG 57.874 47.619 0.00 0.00 0.00 3.51
2989 8189 3.857157 AACCACACCACACAATAGTCT 57.143 42.857 0.00 0.00 0.00 3.24
2990 8190 3.880490 TGAAACCACACCACACAATAGTC 59.120 43.478 0.00 0.00 0.00 2.59
2991 8191 3.882888 CTGAAACCACACCACACAATAGT 59.117 43.478 0.00 0.00 0.00 2.12
2992 8192 3.882888 ACTGAAACCACACCACACAATAG 59.117 43.478 0.00 0.00 0.00 1.73
2993 8193 3.629855 CACTGAAACCACACCACACAATA 59.370 43.478 0.00 0.00 0.00 1.90
2994 8194 2.426738 CACTGAAACCACACCACACAAT 59.573 45.455 0.00 0.00 0.00 2.71
2995 8195 1.815613 CACTGAAACCACACCACACAA 59.184 47.619 0.00 0.00 0.00 3.33
2996 8196 1.271652 ACACTGAAACCACACCACACA 60.272 47.619 0.00 0.00 0.00 3.72
2997 8197 1.459450 ACACTGAAACCACACCACAC 58.541 50.000 0.00 0.00 0.00 3.82
2998 8198 1.815613 CAACACTGAAACCACACCACA 59.184 47.619 0.00 0.00 0.00 4.17
2999 8199 2.088423 TCAACACTGAAACCACACCAC 58.912 47.619 0.00 0.00 0.00 4.16
3000 8200 2.026729 TCTCAACACTGAAACCACACCA 60.027 45.455 0.00 0.00 0.00 4.17
3001 8201 2.614057 CTCTCAACACTGAAACCACACC 59.386 50.000 0.00 0.00 0.00 4.16
3002 8202 3.531538 TCTCTCAACACTGAAACCACAC 58.468 45.455 0.00 0.00 0.00 3.82
3003 8203 3.904800 TCTCTCAACACTGAAACCACA 57.095 42.857 0.00 0.00 0.00 4.17
3004 8204 6.312426 CAGATATCTCTCAACACTGAAACCAC 59.688 42.308 1.03 0.00 0.00 4.16
3005 8205 6.401394 CAGATATCTCTCAACACTGAAACCA 58.599 40.000 1.03 0.00 0.00 3.67
3006 8206 5.814705 CCAGATATCTCTCAACACTGAAACC 59.185 44.000 1.03 0.00 0.00 3.27
3007 8207 6.312426 CACCAGATATCTCTCAACACTGAAAC 59.688 42.308 1.03 0.00 0.00 2.78
3008 8208 6.211384 TCACCAGATATCTCTCAACACTGAAA 59.789 38.462 1.03 0.00 0.00 2.69
3009 8209 5.716703 TCACCAGATATCTCTCAACACTGAA 59.283 40.000 1.03 0.00 0.00 3.02
3010 8210 5.126222 GTCACCAGATATCTCTCAACACTGA 59.874 44.000 1.03 0.00 0.00 3.41
3011 8211 5.126869 AGTCACCAGATATCTCTCAACACTG 59.873 44.000 1.03 0.00 0.00 3.66
3012 8212 5.126869 CAGTCACCAGATATCTCTCAACACT 59.873 44.000 1.03 0.00 0.00 3.55
3013 8213 5.347342 CAGTCACCAGATATCTCTCAACAC 58.653 45.833 1.03 0.00 0.00 3.32
3014 8214 4.403752 CCAGTCACCAGATATCTCTCAACA 59.596 45.833 1.03 0.00 0.00 3.33
3015 8215 4.739137 GCCAGTCACCAGATATCTCTCAAC 60.739 50.000 1.03 0.00 0.00 3.18
3016 8216 3.386078 GCCAGTCACCAGATATCTCTCAA 59.614 47.826 1.03 0.00 0.00 3.02
3017 8217 2.961741 GCCAGTCACCAGATATCTCTCA 59.038 50.000 1.03 0.00 0.00 3.27
3018 8218 3.230134 AGCCAGTCACCAGATATCTCTC 58.770 50.000 1.03 0.00 0.00 3.20
3019 8219 3.326946 AGCCAGTCACCAGATATCTCT 57.673 47.619 1.03 0.00 0.00 3.10
3020 8220 3.056891 GCTAGCCAGTCACCAGATATCTC 60.057 52.174 2.29 0.00 0.00 2.75
3021 8221 2.896685 GCTAGCCAGTCACCAGATATCT 59.103 50.000 2.29 0.00 0.00 1.98
3022 8222 2.896685 AGCTAGCCAGTCACCAGATATC 59.103 50.000 12.13 0.00 0.00 1.63
3023 8223 2.632028 CAGCTAGCCAGTCACCAGATAT 59.368 50.000 12.13 0.00 0.00 1.63
3024 8224 2.034878 CAGCTAGCCAGTCACCAGATA 58.965 52.381 12.13 0.00 0.00 1.98
3025 8225 0.829333 CAGCTAGCCAGTCACCAGAT 59.171 55.000 12.13 0.00 0.00 2.90
3026 8226 1.892819 GCAGCTAGCCAGTCACCAGA 61.893 60.000 12.13 0.00 37.23 3.86
3027 8227 1.449246 GCAGCTAGCCAGTCACCAG 60.449 63.158 12.13 0.00 37.23 4.00
3028 8228 2.216331 TGCAGCTAGCCAGTCACCA 61.216 57.895 12.13 0.00 44.83 4.17
3029 8229 1.743252 GTGCAGCTAGCCAGTCACC 60.743 63.158 12.13 0.00 44.83 4.02
3030 8230 1.004560 TGTGCAGCTAGCCAGTCAC 60.005 57.895 12.13 15.72 44.83 3.67
3031 8231 1.004560 GTGTGCAGCTAGCCAGTCA 60.005 57.895 12.13 3.62 44.83 3.41
3032 8232 1.004560 TGTGTGCAGCTAGCCAGTC 60.005 57.895 12.13 0.76 44.83 3.51
3033 8233 1.004080 CTGTGTGCAGCTAGCCAGT 60.004 57.895 12.13 0.00 44.83 4.00
3034 8234 3.886340 CTGTGTGCAGCTAGCCAG 58.114 61.111 12.13 6.56 44.83 4.85
3042 8242 0.452987 AATATTGGCGCTGTGTGCAG 59.547 50.000 7.64 0.00 45.23 4.41
3053 8253 5.443185 TCTTAAGCTGCATGAATATTGGC 57.557 39.130 1.02 0.00 0.00 4.52
3076 8276 9.892130 TGTTTTCCTAAATGGTTTTATGTTGTT 57.108 25.926 0.00 0.00 37.07 2.83
3086 8286 4.222810 GCATCCCTGTTTTCCTAAATGGTT 59.777 41.667 0.00 0.00 37.07 3.67
3088 8288 3.768757 TGCATCCCTGTTTTCCTAAATGG 59.231 43.478 0.00 0.00 37.10 3.16
3132 8332 0.940126 GTCAATCGCTGGTATGGCAG 59.060 55.000 0.00 0.00 0.00 4.85
3142 8342 0.242825 TTCGTCCTTCGTCAATCGCT 59.757 50.000 0.00 0.00 40.80 4.93
3161 8381 1.480954 ACTCGCACCGTTCCATAAGAT 59.519 47.619 0.00 0.00 0.00 2.40
3162 8382 0.892755 ACTCGCACCGTTCCATAAGA 59.107 50.000 0.00 0.00 0.00 2.10
3166 8386 0.036388 AATGACTCGCACCGTTCCAT 60.036 50.000 0.00 0.00 0.00 3.41
3178 8398 2.370281 TCTTGCTGGTCGAATGACTC 57.630 50.000 0.00 0.00 44.83 3.36
3179 8399 3.340814 AATCTTGCTGGTCGAATGACT 57.659 42.857 0.00 0.00 44.83 3.41
3180 8400 3.686726 AGAAATCTTGCTGGTCGAATGAC 59.313 43.478 0.00 0.00 44.72 3.06
3325 8550 9.530633 GCAGCTTAATGTAGTAACATACTAACT 57.469 33.333 0.00 0.00 45.79 2.24
3397 8656 1.798223 CCGGCGTATGTCCATATGTTG 59.202 52.381 6.01 2.31 33.82 3.33
3398 8657 1.414919 ACCGGCGTATGTCCATATGTT 59.585 47.619 6.01 0.00 33.82 2.71
3455 8714 5.359194 AATTCTCCATTTTAGAGAGCCGA 57.641 39.130 0.00 0.00 41.26 5.54
3456 8715 4.513318 GGAATTCTCCATTTTAGAGAGCCG 59.487 45.833 5.23 0.00 41.26 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.