Multiple sequence alignment - TraesCS2A01G028100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G028100 chr2A 100.000 6681 0 0 1 6681 12966170 12959490 0.000000e+00 12338
1 TraesCS2A01G028100 chr2A 85.176 2705 363 32 3007 5694 12739697 12742380 0.000000e+00 2739
2 TraesCS2A01G028100 chr2A 86.667 615 67 7 1613 2227 12739008 12739607 0.000000e+00 667
3 TraesCS2A01G028100 chr2A 80.759 738 98 19 4422 5145 12524986 12524279 2.740000e-148 536
4 TraesCS2A01G028100 chr2A 71.429 1883 435 85 3029 4861 733685731 733683902 1.040000e-107 401
5 TraesCS2A01G028100 chr2A 86.447 273 27 7 206 471 12896364 12896095 2.360000e-74 291
6 TraesCS2A01G028100 chr2A 81.818 242 24 14 208 430 750280136 750279896 1.140000e-42 185
7 TraesCS2A01G028100 chr2A 78.992 238 45 4 1670 1906 679266957 679266724 2.490000e-34 158
8 TraesCS2A01G028100 chr2D 96.533 6230 138 29 513 6681 12389100 12382888 0.000000e+00 10237
9 TraesCS2A01G028100 chr2D 86.439 2721 327 32 2998 5694 12330083 12332785 0.000000e+00 2942
10 TraesCS2A01G028100 chr2D 85.820 2708 339 38 3007 5694 12126923 12129605 0.000000e+00 2832
11 TraesCS2A01G028100 chr2D 82.933 791 93 28 1443 2227 12126080 12126834 0.000000e+00 675
12 TraesCS2A01G028100 chr2D 86.294 394 25 5 5695 6063 651426300 651425911 1.040000e-107 401
13 TraesCS2A01G028100 chr2D 89.116 294 32 0 1613 1906 12329416 12329709 3.810000e-97 366
14 TraesCS2A01G028100 chr2D 86.594 276 26 8 204 471 12259681 12259953 1.820000e-75 294
15 TraesCS2A01G028100 chr2D 88.362 232 27 0 1985 2216 12329749 12329980 5.100000e-71 279
16 TraesCS2A01G028100 chr2D 86.905 168 16 4 208 369 619277303 619277136 4.110000e-42 183
17 TraesCS2A01G028100 chr2D 78.838 241 42 8 1670 1907 536510288 536510054 3.230000e-33 154
18 TraesCS2A01G028100 chr2B 94.969 2763 126 6 2942 5694 18722975 18720216 0.000000e+00 4320
19 TraesCS2A01G028100 chr2B 94.935 2764 126 7 2942 5694 18713017 18710257 0.000000e+00 4316
20 TraesCS2A01G028100 chr2B 92.294 2245 119 23 717 2943 18715256 18713048 0.000000e+00 3138
21 TraesCS2A01G028100 chr2B 92.071 2245 124 23 717 2943 18725214 18723006 0.000000e+00 3110
22 TraesCS2A01G028100 chr2B 82.199 382 40 11 5708 6066 761245969 761246345 3.030000e-78 303
23 TraesCS2A01G028100 chr2B 85.795 176 18 5 213 381 757387280 757387105 5.320000e-41 180
24 TraesCS2A01G028100 chrUn 86.322 2727 333 31 2991 5694 12443708 12440999 0.000000e+00 2933
25 TraesCS2A01G028100 chrUn 91.324 1095 57 10 717 1795 332231923 332232995 0.000000e+00 1461
26 TraesCS2A01G028100 chrUn 88.018 434 21 8 6067 6500 12441008 12440606 1.010000e-132 484
27 TraesCS2A01G028100 chrUn 89.597 298 29 1 1616 1911 12444626 12444329 1.760000e-100 377
28 TraesCS2A01G028100 chrUn 88.362 232 27 0 1985 2216 12444296 12444065 5.100000e-71 279
29 TraesCS2A01G028100 chr7A 86.650 397 24 12 5695 6067 63333605 63333214 4.820000e-111 412
30 TraesCS2A01G028100 chr3A 85.063 395 29 12 5694 6064 576566756 576566368 6.330000e-100 375
31 TraesCS2A01G028100 chr3A 84.343 396 30 14 5694 6064 707104790 707104402 6.370000e-95 359
32 TraesCS2A01G028100 chr7D 85.279 394 22 16 5696 6064 579144688 579145070 2.280000e-99 374
33 TraesCS2A01G028100 chr7D 82.687 387 35 13 5708 6071 29683266 29683643 1.400000e-81 315
34 TraesCS2A01G028100 chr1B 84.921 378 29 9 5695 6049 533932412 533932040 2.290000e-94 357
35 TraesCS2A01G028100 chr4A 83.623 403 30 18 5695 6071 618878935 618879327 4.960000e-91 346
36 TraesCS2A01G028100 chr4A 82.412 398 39 9 5695 6068 495794266 495794656 1.080000e-82 318
37 TraesCS2A01G028100 chr5A 82.723 382 38 11 5708 6066 633276256 633275880 1.400000e-81 315
38 TraesCS2A01G028100 chr6D 82.507 383 35 15 5708 6067 11716312 11715939 2.340000e-79 307
39 TraesCS2A01G028100 chr4B 82.105 380 36 14 5708 6063 148129506 148129877 5.070000e-76 296
40 TraesCS2A01G028100 chr4B 82.105 380 36 14 5708 6063 148162572 148162943 5.070000e-76 296
41 TraesCS2A01G028100 chr6A 81.365 381 41 10 5709 6066 196842188 196841815 3.940000e-72 283
42 TraesCS2A01G028100 chr6B 72.104 613 130 26 3335 3936 20489016 20489598 5.400000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G028100 chr2A 12959490 12966170 6680 True 12338.000000 12338 100.000000 1 6681 1 chr2A.!!$R3 6680
1 TraesCS2A01G028100 chr2A 12739008 12742380 3372 False 1703.000000 2739 85.921500 1613 5694 2 chr2A.!!$F1 4081
2 TraesCS2A01G028100 chr2A 12524279 12524986 707 True 536.000000 536 80.759000 4422 5145 1 chr2A.!!$R1 723
3 TraesCS2A01G028100 chr2A 733683902 733685731 1829 True 401.000000 401 71.429000 3029 4861 1 chr2A.!!$R5 1832
4 TraesCS2A01G028100 chr2D 12382888 12389100 6212 True 10237.000000 10237 96.533000 513 6681 1 chr2D.!!$R1 6168
5 TraesCS2A01G028100 chr2D 12126080 12129605 3525 False 1753.500000 2832 84.376500 1443 5694 2 chr2D.!!$F2 4251
6 TraesCS2A01G028100 chr2D 12329416 12332785 3369 False 1195.666667 2942 87.972333 1613 5694 3 chr2D.!!$F3 4081
7 TraesCS2A01G028100 chr2B 18710257 18715256 4999 True 3727.000000 4316 93.614500 717 5694 2 chr2B.!!$R2 4977
8 TraesCS2A01G028100 chr2B 18720216 18725214 4998 True 3715.000000 4320 93.520000 717 5694 2 chr2B.!!$R3 4977
9 TraesCS2A01G028100 chrUn 332231923 332232995 1072 False 1461.000000 1461 91.324000 717 1795 1 chrUn.!!$F1 1078
10 TraesCS2A01G028100 chrUn 12440606 12444626 4020 True 1018.250000 2933 88.074750 1616 6500 4 chrUn.!!$R1 4884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 312 0.032952 GGTACAGGTCGTTGCTCACA 59.967 55.0 0.00 0.0 0.00 3.58 F
1329 1340 0.104671 TGCAGATTCGCATGGATCGA 59.895 50.0 0.00 0.0 36.86 3.59 F
1384 1398 5.678616 GCCTGAAACTTAAACTTGTGCTTGA 60.679 40.0 0.00 0.0 0.00 3.02 F
2700 2734 0.758734 CCTGGCCAGATAACATCCGA 59.241 55.0 34.91 0.0 0.00 4.55 F
3591 3891 0.109827 CATGTGCAATGGCGTTTCGA 60.110 50.0 0.00 0.0 45.35 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 1466 0.253327 GCTGTTCGGGGAAAGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75 R
2598 2632 3.327757 GCACCATGACCCATATTCCTCTA 59.672 47.826 0.00 0.00 0.00 2.43 R
3566 3866 1.336148 ACGCCATTGCACATGTTTCTG 60.336 47.619 0.00 0.00 37.32 3.02 R
3730 4034 3.515602 AGTGGAGGCTTGAGAAACATT 57.484 42.857 0.00 0.00 0.00 2.71 R
5682 6066 3.368427 CGTGCTGACTCAAGGAATCCTTA 60.368 47.826 15.04 2.92 42.67 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.482722 CATGAAAAAGAGCTCATGCGT 57.517 42.857 17.77 0.00 41.70 5.24
25 26 2.975410 TGAAAAAGAGCTCATGCGTG 57.025 45.000 17.77 0.00 45.42 5.34
26 27 1.536766 TGAAAAAGAGCTCATGCGTGG 59.463 47.619 17.77 0.00 45.42 4.94
27 28 1.537202 GAAAAAGAGCTCATGCGTGGT 59.463 47.619 17.77 0.00 45.42 4.16
28 29 2.472695 AAAAGAGCTCATGCGTGGTA 57.527 45.000 17.77 0.00 45.42 3.25
29 30 1.726853 AAAGAGCTCATGCGTGGTAC 58.273 50.000 17.77 0.00 45.42 3.34
30 31 0.608130 AAGAGCTCATGCGTGGTACA 59.392 50.000 17.77 0.00 45.42 2.90
31 32 0.608130 AGAGCTCATGCGTGGTACAA 59.392 50.000 17.77 0.00 45.42 2.41
32 33 1.001974 AGAGCTCATGCGTGGTACAAA 59.998 47.619 17.77 0.00 45.42 2.83
33 34 1.394917 GAGCTCATGCGTGGTACAAAG 59.605 52.381 9.40 0.00 45.42 2.77
34 35 1.156736 GCTCATGCGTGGTACAAAGT 58.843 50.000 5.98 0.00 44.16 2.66
35 36 1.535462 GCTCATGCGTGGTACAAAGTT 59.465 47.619 5.98 0.00 44.16 2.66
36 37 2.665519 GCTCATGCGTGGTACAAAGTTG 60.666 50.000 5.98 0.00 44.16 3.16
37 38 2.805671 CTCATGCGTGGTACAAAGTTGA 59.194 45.455 5.98 0.00 44.16 3.18
38 39 3.206964 TCATGCGTGGTACAAAGTTGAA 58.793 40.909 5.98 0.00 44.16 2.69
39 40 3.249799 TCATGCGTGGTACAAAGTTGAAG 59.750 43.478 5.98 0.00 44.16 3.02
40 41 2.907634 TGCGTGGTACAAAGTTGAAGA 58.092 42.857 0.00 0.00 44.16 2.87
41 42 3.472652 TGCGTGGTACAAAGTTGAAGAT 58.527 40.909 0.00 0.00 44.16 2.40
42 43 3.880490 TGCGTGGTACAAAGTTGAAGATT 59.120 39.130 0.00 0.00 44.16 2.40
43 44 4.336993 TGCGTGGTACAAAGTTGAAGATTT 59.663 37.500 0.00 0.00 44.16 2.17
44 45 4.675114 GCGTGGTACAAAGTTGAAGATTTG 59.325 41.667 0.00 2.30 44.16 2.32
45 46 5.212194 CGTGGTACAAAGTTGAAGATTTGG 58.788 41.667 0.00 0.00 44.16 3.28
46 47 5.528870 GTGGTACAAAGTTGAAGATTTGGG 58.471 41.667 0.00 0.00 44.16 4.12
47 48 5.300792 GTGGTACAAAGTTGAAGATTTGGGA 59.699 40.000 0.00 0.00 44.16 4.37
48 49 6.015434 GTGGTACAAAGTTGAAGATTTGGGAT 60.015 38.462 0.00 0.00 44.16 3.85
49 50 6.015519 TGGTACAAAGTTGAAGATTTGGGATG 60.016 38.462 0.00 0.00 40.05 3.51
50 51 6.208599 GGTACAAAGTTGAAGATTTGGGATGA 59.791 38.462 0.00 0.00 40.05 2.92
51 52 6.729690 ACAAAGTTGAAGATTTGGGATGAA 57.270 33.333 0.00 0.00 40.05 2.57
52 53 7.307131 ACAAAGTTGAAGATTTGGGATGAAT 57.693 32.000 0.00 0.00 40.05 2.57
53 54 7.156673 ACAAAGTTGAAGATTTGGGATGAATG 58.843 34.615 0.00 0.00 40.05 2.67
54 55 6.923199 AAGTTGAAGATTTGGGATGAATGT 57.077 33.333 0.00 0.00 0.00 2.71
55 56 6.923199 AGTTGAAGATTTGGGATGAATGTT 57.077 33.333 0.00 0.00 0.00 2.71
56 57 8.421249 AAGTTGAAGATTTGGGATGAATGTTA 57.579 30.769 0.00 0.00 0.00 2.41
57 58 7.830739 AGTTGAAGATTTGGGATGAATGTTAC 58.169 34.615 0.00 0.00 0.00 2.50
58 59 6.435430 TGAAGATTTGGGATGAATGTTACG 57.565 37.500 0.00 0.00 0.00 3.18
59 60 5.356751 TGAAGATTTGGGATGAATGTTACGG 59.643 40.000 0.00 0.00 0.00 4.02
60 61 5.110814 AGATTTGGGATGAATGTTACGGA 57.889 39.130 0.00 0.00 0.00 4.69
61 62 5.505780 AGATTTGGGATGAATGTTACGGAA 58.494 37.500 0.00 0.00 0.00 4.30
62 63 5.357032 AGATTTGGGATGAATGTTACGGAAC 59.643 40.000 2.68 2.68 36.00 3.62
63 64 3.992943 TGGGATGAATGTTACGGAACT 57.007 42.857 12.67 0.00 36.45 3.01
64 65 4.295141 TGGGATGAATGTTACGGAACTT 57.705 40.909 12.67 1.95 36.45 2.66
65 66 5.423704 TGGGATGAATGTTACGGAACTTA 57.576 39.130 12.67 0.00 36.45 2.24
66 67 5.806818 TGGGATGAATGTTACGGAACTTAA 58.193 37.500 12.67 0.00 36.45 1.85
67 68 6.419791 TGGGATGAATGTTACGGAACTTAAT 58.580 36.000 12.67 2.41 36.45 1.40
68 69 6.887545 TGGGATGAATGTTACGGAACTTAATT 59.112 34.615 12.67 3.02 36.45 1.40
69 70 7.148154 TGGGATGAATGTTACGGAACTTAATTG 60.148 37.037 12.67 0.00 36.45 2.32
70 71 7.193595 GGATGAATGTTACGGAACTTAATTGG 58.806 38.462 12.67 0.00 36.45 3.16
71 72 7.066525 GGATGAATGTTACGGAACTTAATTGGA 59.933 37.037 12.67 0.00 36.45 3.53
72 73 7.372451 TGAATGTTACGGAACTTAATTGGAG 57.628 36.000 12.67 0.00 36.45 3.86
73 74 7.162761 TGAATGTTACGGAACTTAATTGGAGA 58.837 34.615 12.67 0.00 36.45 3.71
74 75 7.827236 TGAATGTTACGGAACTTAATTGGAGAT 59.173 33.333 12.67 0.00 36.45 2.75
75 76 6.978343 TGTTACGGAACTTAATTGGAGATG 57.022 37.500 12.67 0.00 36.45 2.90
76 77 5.878116 TGTTACGGAACTTAATTGGAGATGG 59.122 40.000 12.67 0.00 36.45 3.51
77 78 3.279434 ACGGAACTTAATTGGAGATGGC 58.721 45.455 0.00 0.00 0.00 4.40
78 79 3.278574 CGGAACTTAATTGGAGATGGCA 58.721 45.455 0.00 0.00 0.00 4.92
79 80 3.065371 CGGAACTTAATTGGAGATGGCAC 59.935 47.826 0.00 0.00 0.00 5.01
135 136 9.863845 TGTGTATTTTATCGACTTTCTATCACA 57.136 29.630 0.00 0.00 0.00 3.58
137 138 9.529325 TGTATTTTATCGACTTTCTATCACAGG 57.471 33.333 0.00 0.00 0.00 4.00
138 139 9.530633 GTATTTTATCGACTTTCTATCACAGGT 57.469 33.333 0.00 0.00 0.00 4.00
140 141 8.842358 TTTTATCGACTTTCTATCACAGGTTT 57.158 30.769 0.00 0.00 0.00 3.27
141 142 7.827819 TTATCGACTTTCTATCACAGGTTTG 57.172 36.000 0.00 0.00 0.00 2.93
142 143 5.462530 TCGACTTTCTATCACAGGTTTGA 57.537 39.130 0.00 0.00 0.00 2.69
143 144 5.227908 TCGACTTTCTATCACAGGTTTGAC 58.772 41.667 0.00 0.00 0.00 3.18
144 145 5.010719 TCGACTTTCTATCACAGGTTTGACT 59.989 40.000 0.00 0.00 0.00 3.41
145 146 5.696724 CGACTTTCTATCACAGGTTTGACTT 59.303 40.000 0.00 0.00 0.00 3.01
146 147 6.128795 CGACTTTCTATCACAGGTTTGACTTC 60.129 42.308 0.00 0.00 0.00 3.01
147 148 6.591935 ACTTTCTATCACAGGTTTGACTTCA 58.408 36.000 0.00 0.00 0.00 3.02
148 149 7.227156 ACTTTCTATCACAGGTTTGACTTCAT 58.773 34.615 0.00 0.00 0.00 2.57
149 150 7.721399 ACTTTCTATCACAGGTTTGACTTCATT 59.279 33.333 0.00 0.00 0.00 2.57
150 151 8.463930 TTTCTATCACAGGTTTGACTTCATTT 57.536 30.769 0.00 0.00 0.00 2.32
151 152 9.567776 TTTCTATCACAGGTTTGACTTCATTTA 57.432 29.630 0.00 0.00 0.00 1.40
152 153 9.739276 TTCTATCACAGGTTTGACTTCATTTAT 57.261 29.630 0.00 0.00 0.00 1.40
156 157 8.862325 TCACAGGTTTGACTTCATTTATATGT 57.138 30.769 0.00 0.00 33.34 2.29
157 158 9.952030 TCACAGGTTTGACTTCATTTATATGTA 57.048 29.630 0.00 0.00 33.34 2.29
187 188 9.541143 TCAATTTTTCTAAAGACATGGGAAAAC 57.459 29.630 0.00 0.00 36.20 2.43
188 189 9.546428 CAATTTTTCTAAAGACATGGGAAAACT 57.454 29.630 0.00 0.00 36.20 2.66
189 190 9.764363 AATTTTTCTAAAGACATGGGAAAACTC 57.236 29.630 0.00 0.00 36.20 3.01
190 191 6.894339 TTTCTAAAGACATGGGAAAACTCC 57.106 37.500 0.00 0.00 0.00 3.85
204 205 4.814771 GGAAAACTCCCACATAATCTACCG 59.185 45.833 0.00 0.00 0.00 4.02
205 206 5.425630 GAAAACTCCCACATAATCTACCGT 58.574 41.667 0.00 0.00 0.00 4.83
206 207 6.407299 GGAAAACTCCCACATAATCTACCGTA 60.407 42.308 0.00 0.00 0.00 4.02
207 208 5.786264 AACTCCCACATAATCTACCGTAG 57.214 43.478 0.00 0.00 0.00 3.51
208 209 3.573110 ACTCCCACATAATCTACCGTAGC 59.427 47.826 0.18 0.00 0.00 3.58
209 210 3.568443 TCCCACATAATCTACCGTAGCA 58.432 45.455 0.18 0.00 0.00 3.49
210 211 3.962063 TCCCACATAATCTACCGTAGCAA 59.038 43.478 0.18 0.00 0.00 3.91
211 212 4.406326 TCCCACATAATCTACCGTAGCAAA 59.594 41.667 0.18 0.00 0.00 3.68
212 213 5.104859 TCCCACATAATCTACCGTAGCAAAA 60.105 40.000 0.18 0.00 0.00 2.44
213 214 5.587043 CCCACATAATCTACCGTAGCAAAAA 59.413 40.000 0.18 0.00 0.00 1.94
214 215 6.262273 CCCACATAATCTACCGTAGCAAAAAT 59.738 38.462 0.18 0.00 0.00 1.82
215 216 7.132213 CCACATAATCTACCGTAGCAAAAATG 58.868 38.462 0.18 3.54 0.00 2.32
216 217 7.201696 CCACATAATCTACCGTAGCAAAAATGT 60.202 37.037 0.18 4.07 0.00 2.71
217 218 8.822855 CACATAATCTACCGTAGCAAAAATGTA 58.177 33.333 0.18 0.00 0.00 2.29
218 219 9.555727 ACATAATCTACCGTAGCAAAAATGTAT 57.444 29.630 0.18 0.00 0.00 2.29
219 220 9.811655 CATAATCTACCGTAGCAAAAATGTATG 57.188 33.333 0.18 0.00 0.00 2.39
220 221 7.859325 AATCTACCGTAGCAAAAATGTATGT 57.141 32.000 0.18 0.00 0.00 2.29
221 222 6.656314 TCTACCGTAGCAAAAATGTATGTG 57.344 37.500 0.18 0.00 0.00 3.21
222 223 6.399743 TCTACCGTAGCAAAAATGTATGTGA 58.600 36.000 0.18 0.00 0.00 3.58
223 224 5.291293 ACCGTAGCAAAAATGTATGTGAC 57.709 39.130 0.00 0.00 0.00 3.67
224 225 5.001232 ACCGTAGCAAAAATGTATGTGACT 58.999 37.500 0.00 0.00 0.00 3.41
225 226 5.472137 ACCGTAGCAAAAATGTATGTGACTT 59.528 36.000 0.00 0.00 0.00 3.01
226 227 6.651643 ACCGTAGCAAAAATGTATGTGACTTA 59.348 34.615 0.00 0.00 0.00 2.24
227 228 6.959311 CCGTAGCAAAAATGTATGTGACTTAC 59.041 38.462 2.03 2.03 0.00 2.34
228 229 7.148474 CCGTAGCAAAAATGTATGTGACTTACT 60.148 37.037 9.59 0.00 0.00 2.24
229 230 8.227791 CGTAGCAAAAATGTATGTGACTTACTT 58.772 33.333 9.59 1.54 0.00 2.24
230 231 9.893305 GTAGCAAAAATGTATGTGACTTACTTT 57.107 29.630 9.59 6.97 0.00 2.66
232 233 8.850156 AGCAAAAATGTATGTGACTTACTTTCT 58.150 29.630 9.59 2.00 0.00 2.52
233 234 8.905702 GCAAAAATGTATGTGACTTACTTTCTG 58.094 33.333 9.59 10.46 0.00 3.02
236 237 8.553459 AAATGTATGTGACTTACTTTCTGAGG 57.447 34.615 9.59 0.00 0.00 3.86
237 238 5.479306 TGTATGTGACTTACTTTCTGAGGC 58.521 41.667 9.59 0.00 0.00 4.70
238 239 3.402628 TGTGACTTACTTTCTGAGGCC 57.597 47.619 0.00 0.00 0.00 5.19
239 240 2.703536 TGTGACTTACTTTCTGAGGCCA 59.296 45.455 5.01 0.00 0.00 5.36
240 241 3.067833 GTGACTTACTTTCTGAGGCCAC 58.932 50.000 5.01 0.00 0.00 5.01
241 242 2.703536 TGACTTACTTTCTGAGGCCACA 59.296 45.455 5.01 3.31 0.00 4.17
242 243 3.327757 TGACTTACTTTCTGAGGCCACAT 59.672 43.478 5.01 0.00 0.00 3.21
243 244 4.530553 TGACTTACTTTCTGAGGCCACATA 59.469 41.667 5.01 0.00 0.00 2.29
244 245 5.091261 ACTTACTTTCTGAGGCCACATAG 57.909 43.478 5.01 5.56 0.00 2.23
245 246 4.532521 ACTTACTTTCTGAGGCCACATAGT 59.467 41.667 5.01 11.28 0.00 2.12
246 247 3.618690 ACTTTCTGAGGCCACATAGTC 57.381 47.619 5.01 0.00 0.00 2.59
247 248 2.093973 ACTTTCTGAGGCCACATAGTCG 60.094 50.000 5.01 0.00 0.00 4.18
248 249 0.824109 TTCTGAGGCCACATAGTCGG 59.176 55.000 5.01 0.00 0.00 4.79
249 250 1.043116 TCTGAGGCCACATAGTCGGG 61.043 60.000 5.01 0.00 0.00 5.14
250 251 1.001120 TGAGGCCACATAGTCGGGA 59.999 57.895 5.01 0.00 0.00 5.14
251 252 1.043116 TGAGGCCACATAGTCGGGAG 61.043 60.000 5.01 0.00 0.00 4.30
252 253 0.755698 GAGGCCACATAGTCGGGAGA 60.756 60.000 5.01 0.00 0.00 3.71
253 254 0.757188 AGGCCACATAGTCGGGAGAG 60.757 60.000 5.01 0.00 41.26 3.20
254 255 1.043673 GGCCACATAGTCGGGAGAGT 61.044 60.000 0.00 0.00 46.13 3.24
255 256 0.386113 GCCACATAGTCGGGAGAGTC 59.614 60.000 0.00 0.00 42.66 3.36
256 257 2.024825 GCCACATAGTCGGGAGAGTCT 61.025 57.143 0.00 0.00 42.66 3.24
257 258 2.379972 CCACATAGTCGGGAGAGTCTT 58.620 52.381 0.00 0.00 42.66 3.01
258 259 2.761208 CCACATAGTCGGGAGAGTCTTT 59.239 50.000 0.00 0.00 42.66 2.52
259 260 3.429547 CCACATAGTCGGGAGAGTCTTTG 60.430 52.174 0.00 0.00 42.66 2.77
260 261 3.444034 CACATAGTCGGGAGAGTCTTTGA 59.556 47.826 0.00 0.00 42.66 2.69
261 262 4.098654 CACATAGTCGGGAGAGTCTTTGAT 59.901 45.833 0.00 0.00 42.66 2.57
262 263 4.712337 ACATAGTCGGGAGAGTCTTTGATT 59.288 41.667 0.00 0.00 42.66 2.57
263 264 5.187967 ACATAGTCGGGAGAGTCTTTGATTT 59.812 40.000 0.00 0.00 42.66 2.17
264 265 4.625607 AGTCGGGAGAGTCTTTGATTTT 57.374 40.909 0.00 0.00 38.35 1.82
265 266 4.570930 AGTCGGGAGAGTCTTTGATTTTC 58.429 43.478 0.00 0.00 38.35 2.29
266 267 4.284746 AGTCGGGAGAGTCTTTGATTTTCT 59.715 41.667 0.00 0.00 38.35 2.52
267 268 4.627900 GTCGGGAGAGTCTTTGATTTTCTC 59.372 45.833 0.00 0.00 41.26 2.87
268 269 4.528596 TCGGGAGAGTCTTTGATTTTCTCT 59.471 41.667 0.00 0.00 38.05 3.10
269 270 4.629200 CGGGAGAGTCTTTGATTTTCTCTG 59.371 45.833 0.00 0.00 35.93 3.35
270 271 5.567623 CGGGAGAGTCTTTGATTTTCTCTGA 60.568 44.000 0.00 0.00 35.93 3.27
271 272 6.234177 GGGAGAGTCTTTGATTTTCTCTGAA 58.766 40.000 0.00 0.00 35.93 3.02
272 273 6.712547 GGGAGAGTCTTTGATTTTCTCTGAAA 59.287 38.462 0.00 0.00 35.93 2.69
273 274 7.392953 GGGAGAGTCTTTGATTTTCTCTGAAAT 59.607 37.037 0.00 0.00 35.93 2.17
274 275 8.450180 GGAGAGTCTTTGATTTTCTCTGAAATC 58.550 37.037 0.00 3.95 43.22 2.17
282 283 7.621428 TGATTTTCTCTGAAATCAGCCTTAG 57.379 36.000 5.53 0.00 45.90 2.18
283 284 5.886960 TTTTCTCTGAAATCAGCCTTAGC 57.113 39.130 5.53 0.00 43.46 3.09
284 285 3.550437 TCTCTGAAATCAGCCTTAGCC 57.450 47.619 5.53 0.00 43.46 3.93
285 286 2.840038 TCTCTGAAATCAGCCTTAGCCA 59.160 45.455 5.53 0.00 43.46 4.75
286 287 3.457380 TCTCTGAAATCAGCCTTAGCCAT 59.543 43.478 5.53 0.00 43.46 4.40
287 288 4.080129 TCTCTGAAATCAGCCTTAGCCATT 60.080 41.667 5.53 0.00 43.46 3.16
288 289 4.603131 TCTGAAATCAGCCTTAGCCATTT 58.397 39.130 5.53 0.00 43.46 2.32
289 290 5.018809 TCTGAAATCAGCCTTAGCCATTTT 58.981 37.500 5.53 0.00 43.46 1.82
290 291 6.186957 TCTGAAATCAGCCTTAGCCATTTTA 58.813 36.000 5.53 0.00 43.46 1.52
291 292 6.663093 TCTGAAATCAGCCTTAGCCATTTTAA 59.337 34.615 5.53 0.00 43.46 1.52
292 293 6.866480 TGAAATCAGCCTTAGCCATTTTAAG 58.134 36.000 0.00 0.00 41.25 1.85
293 294 5.859205 AATCAGCCTTAGCCATTTTAAGG 57.141 39.130 6.67 6.67 46.49 2.69
294 295 4.316025 TCAGCCTTAGCCATTTTAAGGT 57.684 40.909 11.48 0.00 45.82 3.50
295 296 5.444744 TCAGCCTTAGCCATTTTAAGGTA 57.555 39.130 11.48 0.00 45.82 3.08
296 297 5.190677 TCAGCCTTAGCCATTTTAAGGTAC 58.809 41.667 11.48 0.00 45.82 3.34
297 298 4.947388 CAGCCTTAGCCATTTTAAGGTACA 59.053 41.667 11.48 0.00 45.82 2.90
298 299 5.066505 CAGCCTTAGCCATTTTAAGGTACAG 59.933 44.000 11.48 0.00 45.82 2.74
299 300 4.338400 GCCTTAGCCATTTTAAGGTACAGG 59.662 45.833 11.48 0.00 45.82 4.00
300 301 5.506708 CCTTAGCCATTTTAAGGTACAGGT 58.493 41.667 0.00 0.00 41.39 4.00
301 302 5.589050 CCTTAGCCATTTTAAGGTACAGGTC 59.411 44.000 0.00 0.00 41.39 3.85
302 303 3.606687 AGCCATTTTAAGGTACAGGTCG 58.393 45.455 0.00 0.00 0.00 4.79
303 304 3.008704 AGCCATTTTAAGGTACAGGTCGT 59.991 43.478 0.00 0.00 0.00 4.34
304 305 3.754850 GCCATTTTAAGGTACAGGTCGTT 59.245 43.478 0.00 0.00 0.00 3.85
305 306 4.379082 GCCATTTTAAGGTACAGGTCGTTG 60.379 45.833 0.00 0.00 0.00 4.10
306 307 4.379082 CCATTTTAAGGTACAGGTCGTTGC 60.379 45.833 0.00 0.00 0.00 4.17
307 308 3.756933 TTTAAGGTACAGGTCGTTGCT 57.243 42.857 0.00 0.00 0.00 3.91
308 309 3.308438 TTAAGGTACAGGTCGTTGCTC 57.692 47.619 0.00 0.00 0.00 4.26
309 310 1.045407 AAGGTACAGGTCGTTGCTCA 58.955 50.000 0.00 0.00 0.00 4.26
310 311 0.317479 AGGTACAGGTCGTTGCTCAC 59.683 55.000 0.00 0.00 0.00 3.51
311 312 0.032952 GGTACAGGTCGTTGCTCACA 59.967 55.000 0.00 0.00 0.00 3.58
312 313 1.539496 GGTACAGGTCGTTGCTCACAA 60.539 52.381 0.00 0.00 0.00 3.33
313 314 1.792949 GTACAGGTCGTTGCTCACAAG 59.207 52.381 0.00 0.00 36.16 3.16
314 315 0.464036 ACAGGTCGTTGCTCACAAGA 59.536 50.000 0.00 0.00 36.16 3.02
315 316 1.070758 ACAGGTCGTTGCTCACAAGAT 59.929 47.619 0.00 0.00 36.16 2.40
316 317 2.146342 CAGGTCGTTGCTCACAAGATT 58.854 47.619 0.00 0.00 36.16 2.40
317 318 2.158449 CAGGTCGTTGCTCACAAGATTC 59.842 50.000 0.00 0.00 36.16 2.52
318 319 2.143122 GGTCGTTGCTCACAAGATTCA 58.857 47.619 0.00 0.00 36.16 2.57
319 320 2.744202 GGTCGTTGCTCACAAGATTCAT 59.256 45.455 0.00 0.00 36.16 2.57
320 321 3.189287 GGTCGTTGCTCACAAGATTCATT 59.811 43.478 0.00 0.00 36.16 2.57
321 322 4.398247 GTCGTTGCTCACAAGATTCATTC 58.602 43.478 0.00 0.00 36.16 2.67
322 323 4.153117 GTCGTTGCTCACAAGATTCATTCT 59.847 41.667 0.00 0.00 36.16 2.40
323 324 4.152938 TCGTTGCTCACAAGATTCATTCTG 59.847 41.667 0.00 0.00 36.16 3.02
324 325 4.152938 CGTTGCTCACAAGATTCATTCTGA 59.847 41.667 0.00 0.00 36.16 3.27
325 326 5.334337 CGTTGCTCACAAGATTCATTCTGAA 60.334 40.000 0.00 0.00 37.32 3.02
326 327 5.874895 TGCTCACAAGATTCATTCTGAAG 57.125 39.130 0.00 0.00 40.05 3.02
327 328 5.311265 TGCTCACAAGATTCATTCTGAAGT 58.689 37.500 0.00 0.00 40.05 3.01
328 329 5.180680 TGCTCACAAGATTCATTCTGAAGTG 59.819 40.000 0.00 0.00 40.05 3.16
329 330 5.180868 GCTCACAAGATTCATTCTGAAGTGT 59.819 40.000 0.00 3.70 40.05 3.55
330 331 6.293845 GCTCACAAGATTCATTCTGAAGTGTT 60.294 38.462 0.00 0.00 40.05 3.32
331 332 7.095060 GCTCACAAGATTCATTCTGAAGTGTTA 60.095 37.037 0.00 0.00 40.05 2.41
332 333 8.675705 TCACAAGATTCATTCTGAAGTGTTAA 57.324 30.769 0.00 0.00 40.05 2.01
333 334 9.119418 TCACAAGATTCATTCTGAAGTGTTAAA 57.881 29.630 0.00 0.00 40.05 1.52
334 335 9.903682 CACAAGATTCATTCTGAAGTGTTAAAT 57.096 29.630 0.00 0.00 40.05 1.40
335 336 9.903682 ACAAGATTCATTCTGAAGTGTTAAATG 57.096 29.630 0.00 0.00 40.05 2.32
336 337 9.903682 CAAGATTCATTCTGAAGTGTTAAATGT 57.096 29.630 0.00 0.00 40.05 2.71
338 339 9.288576 AGATTCATTCTGAAGTGTTAAATGTCA 57.711 29.630 0.00 0.00 40.05 3.58
339 340 9.552114 GATTCATTCTGAAGTGTTAAATGTCAG 57.448 33.333 0.00 0.00 40.05 3.51
340 341 8.675705 TTCATTCTGAAGTGTTAAATGTCAGA 57.324 30.769 0.00 0.00 42.17 3.27
343 344 6.861065 TCTGAAGTGTTAAATGTCAGAACC 57.139 37.500 0.00 0.00 41.22 3.62
344 345 6.353323 TCTGAAGTGTTAAATGTCAGAACCA 58.647 36.000 0.00 0.00 41.22 3.67
345 346 6.826231 TCTGAAGTGTTAAATGTCAGAACCAA 59.174 34.615 0.00 0.00 41.22 3.67
346 347 7.338196 TCTGAAGTGTTAAATGTCAGAACCAAA 59.662 33.333 0.00 0.00 41.22 3.28
347 348 7.479980 TGAAGTGTTAAATGTCAGAACCAAAG 58.520 34.615 0.00 0.00 0.00 2.77
348 349 6.391227 AGTGTTAAATGTCAGAACCAAAGG 57.609 37.500 0.00 0.00 0.00 3.11
349 350 5.891551 AGTGTTAAATGTCAGAACCAAAGGT 59.108 36.000 0.00 0.00 37.65 3.50
350 351 5.977129 GTGTTAAATGTCAGAACCAAAGGTG 59.023 40.000 0.00 0.00 35.34 4.00
351 352 5.654650 TGTTAAATGTCAGAACCAAAGGTGT 59.345 36.000 0.00 0.00 35.34 4.16
352 353 4.918810 AAATGTCAGAACCAAAGGTGTC 57.081 40.909 0.00 0.00 35.34 3.67
353 354 3.576078 ATGTCAGAACCAAAGGTGTCA 57.424 42.857 0.00 0.00 35.34 3.58
354 355 2.639065 TGTCAGAACCAAAGGTGTCAC 58.361 47.619 0.00 0.00 35.34 3.67
355 356 2.026729 TGTCAGAACCAAAGGTGTCACA 60.027 45.455 5.12 0.00 35.34 3.58
356 357 3.013921 GTCAGAACCAAAGGTGTCACAA 58.986 45.455 5.12 0.00 35.34 3.33
357 358 3.442273 GTCAGAACCAAAGGTGTCACAAA 59.558 43.478 5.12 0.00 35.34 2.83
358 359 4.097892 GTCAGAACCAAAGGTGTCACAAAT 59.902 41.667 5.12 0.00 35.34 2.32
359 360 5.298276 GTCAGAACCAAAGGTGTCACAAATA 59.702 40.000 5.12 0.00 35.34 1.40
360 361 6.016276 GTCAGAACCAAAGGTGTCACAAATAT 60.016 38.462 5.12 0.00 35.34 1.28
361 362 6.206634 TCAGAACCAAAGGTGTCACAAATATC 59.793 38.462 5.12 0.00 35.34 1.63
362 363 6.207417 CAGAACCAAAGGTGTCACAAATATCT 59.793 38.462 5.12 0.00 35.34 1.98
363 364 5.964958 ACCAAAGGTGTCACAAATATCTG 57.035 39.130 5.12 0.00 32.98 2.90
364 365 4.766891 ACCAAAGGTGTCACAAATATCTGG 59.233 41.667 5.12 4.03 32.98 3.86
365 366 4.380867 CCAAAGGTGTCACAAATATCTGGC 60.381 45.833 5.12 0.00 0.00 4.85
366 367 4.307032 AAGGTGTCACAAATATCTGGCT 57.693 40.909 5.12 0.00 0.00 4.75
367 368 5.435686 AAGGTGTCACAAATATCTGGCTA 57.564 39.130 5.12 0.00 0.00 3.93
368 369 4.770795 AGGTGTCACAAATATCTGGCTAC 58.229 43.478 5.12 0.00 0.00 3.58
369 370 3.877508 GGTGTCACAAATATCTGGCTACC 59.122 47.826 5.12 0.00 0.00 3.18
370 371 4.513442 GTGTCACAAATATCTGGCTACCA 58.487 43.478 0.00 0.00 0.00 3.25
371 372 5.126067 GTGTCACAAATATCTGGCTACCAT 58.874 41.667 0.00 0.00 30.82 3.55
372 373 6.288294 GTGTCACAAATATCTGGCTACCATA 58.712 40.000 0.00 0.00 30.82 2.74
373 374 6.765989 GTGTCACAAATATCTGGCTACCATAA 59.234 38.462 0.00 0.00 30.82 1.90
374 375 7.282224 GTGTCACAAATATCTGGCTACCATAAA 59.718 37.037 0.00 0.00 30.82 1.40
375 376 7.998383 TGTCACAAATATCTGGCTACCATAAAT 59.002 33.333 0.00 0.00 30.82 1.40
376 377 8.850156 GTCACAAATATCTGGCTACCATAAATT 58.150 33.333 0.00 0.00 30.82 1.82
377 378 9.066892 TCACAAATATCTGGCTACCATAAATTC 57.933 33.333 0.00 0.00 30.82 2.17
378 379 9.071276 CACAAATATCTGGCTACCATAAATTCT 57.929 33.333 0.00 0.00 30.82 2.40
386 387 8.314751 TCTGGCTACCATAAATTCTATAGAAGC 58.685 37.037 19.51 13.46 33.00 3.86
387 388 8.207350 TGGCTACCATAAATTCTATAGAAGCT 57.793 34.615 19.51 11.66 37.48 3.74
388 389 8.097038 TGGCTACCATAAATTCTATAGAAGCTG 58.903 37.037 19.51 13.06 37.48 4.24
389 390 7.065204 GGCTACCATAAATTCTATAGAAGCTGC 59.935 40.741 19.51 11.77 37.48 5.25
390 391 7.604164 GCTACCATAAATTCTATAGAAGCTGCA 59.396 37.037 19.51 4.80 37.48 4.41
391 392 9.664332 CTACCATAAATTCTATAGAAGCTGCAT 57.336 33.333 19.51 6.66 37.48 3.96
392 393 8.930846 ACCATAAATTCTATAGAAGCTGCATT 57.069 30.769 19.51 6.19 37.48 3.56
393 394 9.359653 ACCATAAATTCTATAGAAGCTGCATTT 57.640 29.630 19.51 15.23 37.48 2.32
401 402 8.613060 TCTATAGAAGCTGCATTTAGAATTGG 57.387 34.615 0.00 0.00 0.00 3.16
402 403 8.213679 TCTATAGAAGCTGCATTTAGAATTGGT 58.786 33.333 0.00 0.00 0.00 3.67
403 404 5.573337 AGAAGCTGCATTTAGAATTGGTC 57.427 39.130 1.02 0.00 0.00 4.02
404 405 5.259632 AGAAGCTGCATTTAGAATTGGTCT 58.740 37.500 1.02 0.00 40.71 3.85
405 406 6.418101 AGAAGCTGCATTTAGAATTGGTCTA 58.582 36.000 1.02 0.00 37.84 2.59
406 407 6.541641 AGAAGCTGCATTTAGAATTGGTCTAG 59.458 38.462 1.02 0.00 40.04 2.43
407 408 5.749462 AGCTGCATTTAGAATTGGTCTAGT 58.251 37.500 1.02 0.00 40.04 2.57
408 409 5.587844 AGCTGCATTTAGAATTGGTCTAGTG 59.412 40.000 1.02 0.00 40.04 2.74
409 410 5.355350 GCTGCATTTAGAATTGGTCTAGTGT 59.645 40.000 0.00 0.00 40.04 3.55
410 411 6.457528 GCTGCATTTAGAATTGGTCTAGTGTC 60.458 42.308 0.00 0.00 40.04 3.67
411 412 6.472016 TGCATTTAGAATTGGTCTAGTGTCA 58.528 36.000 0.00 0.00 40.04 3.58
412 413 6.595326 TGCATTTAGAATTGGTCTAGTGTCAG 59.405 38.462 0.00 0.00 40.04 3.51
413 414 6.818644 GCATTTAGAATTGGTCTAGTGTCAGA 59.181 38.462 0.00 0.00 40.04 3.27
414 415 7.497249 GCATTTAGAATTGGTCTAGTGTCAGAT 59.503 37.037 0.00 0.00 40.04 2.90
415 416 8.824781 CATTTAGAATTGGTCTAGTGTCAGATG 58.175 37.037 0.00 0.00 40.04 2.90
416 417 7.482169 TTAGAATTGGTCTAGTGTCAGATGT 57.518 36.000 0.00 0.00 40.04 3.06
417 418 6.365970 AGAATTGGTCTAGTGTCAGATGTT 57.634 37.500 0.00 0.00 33.56 2.71
418 419 7.482169 AGAATTGGTCTAGTGTCAGATGTTA 57.518 36.000 0.00 0.00 33.56 2.41
419 420 7.551585 AGAATTGGTCTAGTGTCAGATGTTAG 58.448 38.462 0.00 0.00 33.56 2.34
420 421 4.720649 TGGTCTAGTGTCAGATGTTAGC 57.279 45.455 0.00 0.00 0.00 3.09
421 422 4.344978 TGGTCTAGTGTCAGATGTTAGCT 58.655 43.478 0.00 0.00 0.00 3.32
422 423 4.399618 TGGTCTAGTGTCAGATGTTAGCTC 59.600 45.833 0.00 0.00 0.00 4.09
423 424 4.399618 GGTCTAGTGTCAGATGTTAGCTCA 59.600 45.833 0.00 0.00 0.00 4.26
424 425 5.068460 GGTCTAGTGTCAGATGTTAGCTCAT 59.932 44.000 0.00 0.00 0.00 2.90
425 426 6.263392 GGTCTAGTGTCAGATGTTAGCTCATA 59.737 42.308 0.00 0.00 0.00 2.15
426 427 7.359595 GTCTAGTGTCAGATGTTAGCTCATAG 58.640 42.308 0.00 0.00 0.00 2.23
427 428 5.528043 AGTGTCAGATGTTAGCTCATAGG 57.472 43.478 0.00 0.00 0.00 2.57
428 429 5.204292 AGTGTCAGATGTTAGCTCATAGGA 58.796 41.667 0.00 0.00 0.00 2.94
429 430 5.837979 AGTGTCAGATGTTAGCTCATAGGAT 59.162 40.000 0.00 0.00 0.00 3.24
430 431 5.925397 GTGTCAGATGTTAGCTCATAGGATG 59.075 44.000 0.00 0.00 0.00 3.51
431 432 5.011431 TGTCAGATGTTAGCTCATAGGATGG 59.989 44.000 0.00 0.00 0.00 3.51
432 433 5.011533 GTCAGATGTTAGCTCATAGGATGGT 59.988 44.000 0.00 0.00 0.00 3.55
433 434 5.604231 TCAGATGTTAGCTCATAGGATGGTT 59.396 40.000 0.00 0.00 0.00 3.67
434 435 5.931146 CAGATGTTAGCTCATAGGATGGTTC 59.069 44.000 0.00 0.00 0.00 3.62
435 436 5.843421 AGATGTTAGCTCATAGGATGGTTCT 59.157 40.000 0.00 0.00 0.00 3.01
436 437 5.957771 TGTTAGCTCATAGGATGGTTCTT 57.042 39.130 0.00 0.00 0.00 2.52
437 438 7.510685 AGATGTTAGCTCATAGGATGGTTCTTA 59.489 37.037 0.00 0.00 0.00 2.10
438 439 6.817184 TGTTAGCTCATAGGATGGTTCTTAC 58.183 40.000 0.00 0.00 0.00 2.34
439 440 6.382859 TGTTAGCTCATAGGATGGTTCTTACA 59.617 38.462 0.00 0.00 0.00 2.41
440 441 7.071196 TGTTAGCTCATAGGATGGTTCTTACAT 59.929 37.037 0.00 0.00 0.00 2.29
441 442 5.862845 AGCTCATAGGATGGTTCTTACATG 58.137 41.667 0.00 0.00 0.00 3.21
442 443 5.367937 AGCTCATAGGATGGTTCTTACATGT 59.632 40.000 2.69 2.69 0.00 3.21
443 444 6.554982 AGCTCATAGGATGGTTCTTACATGTA 59.445 38.462 0.08 0.08 0.00 2.29
444 445 6.870965 GCTCATAGGATGGTTCTTACATGTAG 59.129 42.308 5.56 1.19 0.00 2.74
445 446 7.255977 GCTCATAGGATGGTTCTTACATGTAGA 60.256 40.741 5.56 3.56 0.00 2.59
446 447 8.183104 TCATAGGATGGTTCTTACATGTAGAG 57.817 38.462 5.56 7.11 0.00 2.43
447 448 5.283457 AGGATGGTTCTTACATGTAGAGC 57.717 43.478 5.56 7.87 0.00 4.09
448 449 4.101741 AGGATGGTTCTTACATGTAGAGCC 59.898 45.833 20.89 20.89 34.21 4.70
449 450 3.520290 TGGTTCTTACATGTAGAGCCG 57.480 47.619 21.55 7.38 36.01 5.52
450 451 2.202566 GGTTCTTACATGTAGAGCCGC 58.797 52.381 16.46 4.87 0.00 6.53
451 452 2.418197 GGTTCTTACATGTAGAGCCGCA 60.418 50.000 16.46 0.00 0.00 5.69
452 453 3.458189 GTTCTTACATGTAGAGCCGCAT 58.542 45.455 5.56 0.00 0.00 4.73
453 454 3.819564 TCTTACATGTAGAGCCGCATT 57.180 42.857 5.56 0.00 0.00 3.56
454 455 3.717707 TCTTACATGTAGAGCCGCATTC 58.282 45.455 5.56 0.00 0.00 2.67
455 456 2.526304 TACATGTAGAGCCGCATTCC 57.474 50.000 0.08 0.00 0.00 3.01
456 457 0.833287 ACATGTAGAGCCGCATTCCT 59.167 50.000 0.00 0.00 0.00 3.36
457 458 1.202580 ACATGTAGAGCCGCATTCCTC 60.203 52.381 0.00 0.00 0.00 3.71
458 459 1.123077 ATGTAGAGCCGCATTCCTCA 58.877 50.000 0.00 0.00 0.00 3.86
459 460 1.123077 TGTAGAGCCGCATTCCTCAT 58.877 50.000 0.00 0.00 0.00 2.90
460 461 1.486310 TGTAGAGCCGCATTCCTCATT 59.514 47.619 0.00 0.00 0.00 2.57
461 462 2.092968 TGTAGAGCCGCATTCCTCATTT 60.093 45.455 0.00 0.00 0.00 2.32
462 463 3.133901 TGTAGAGCCGCATTCCTCATTTA 59.866 43.478 0.00 0.00 0.00 1.40
463 464 2.843701 AGAGCCGCATTCCTCATTTAG 58.156 47.619 0.00 0.00 0.00 1.85
464 465 2.171448 AGAGCCGCATTCCTCATTTAGT 59.829 45.455 0.00 0.00 0.00 2.24
465 466 3.388024 AGAGCCGCATTCCTCATTTAGTA 59.612 43.478 0.00 0.00 0.00 1.82
466 467 3.467803 AGCCGCATTCCTCATTTAGTAC 58.532 45.455 0.00 0.00 0.00 2.73
467 468 3.118408 AGCCGCATTCCTCATTTAGTACA 60.118 43.478 0.00 0.00 0.00 2.90
468 469 3.815401 GCCGCATTCCTCATTTAGTACAT 59.185 43.478 0.00 0.00 0.00 2.29
469 470 4.319766 GCCGCATTCCTCATTTAGTACATG 60.320 45.833 0.00 0.00 0.00 3.21
470 471 5.056480 CCGCATTCCTCATTTAGTACATGA 58.944 41.667 0.00 0.00 0.00 3.07
471 472 5.050091 CCGCATTCCTCATTTAGTACATGAC 60.050 44.000 0.00 0.00 0.00 3.06
472 473 5.332581 CGCATTCCTCATTTAGTACATGACG 60.333 44.000 0.00 0.00 0.00 4.35
473 474 5.753438 GCATTCCTCATTTAGTACATGACGA 59.247 40.000 0.00 0.00 0.00 4.20
474 475 6.074088 GCATTCCTCATTTAGTACATGACGAG 60.074 42.308 0.00 0.00 0.00 4.18
475 476 4.933330 TCCTCATTTAGTACATGACGAGC 58.067 43.478 0.00 0.00 0.00 5.03
476 477 4.645136 TCCTCATTTAGTACATGACGAGCT 59.355 41.667 0.00 0.00 0.00 4.09
477 478 4.742167 CCTCATTTAGTACATGACGAGCTG 59.258 45.833 0.00 0.00 0.00 4.24
478 479 5.324784 TCATTTAGTACATGACGAGCTGT 57.675 39.130 0.00 0.00 0.00 4.40
491 492 5.487153 GACGAGCTGTCTATTCTACAAGA 57.513 43.478 0.00 0.00 44.58 3.02
492 493 6.067263 GACGAGCTGTCTATTCTACAAGAT 57.933 41.667 0.00 0.00 44.58 2.40
493 494 5.826586 ACGAGCTGTCTATTCTACAAGATG 58.173 41.667 0.00 0.00 0.00 2.90
494 495 4.679197 CGAGCTGTCTATTCTACAAGATGC 59.321 45.833 0.00 0.00 0.00 3.91
495 496 5.507149 CGAGCTGTCTATTCTACAAGATGCT 60.507 44.000 0.00 0.00 37.22 3.79
496 497 5.841810 AGCTGTCTATTCTACAAGATGCTC 58.158 41.667 0.00 0.00 32.64 4.26
497 498 5.362143 AGCTGTCTATTCTACAAGATGCTCA 59.638 40.000 0.00 0.00 32.64 4.26
498 499 6.041865 AGCTGTCTATTCTACAAGATGCTCAT 59.958 38.462 0.00 0.00 32.64 2.90
499 500 6.145858 GCTGTCTATTCTACAAGATGCTCATG 59.854 42.308 0.00 0.00 0.00 3.07
500 501 7.352079 TGTCTATTCTACAAGATGCTCATGA 57.648 36.000 0.00 0.00 0.00 3.07
501 502 7.205992 TGTCTATTCTACAAGATGCTCATGAC 58.794 38.462 0.00 0.00 0.00 3.06
502 503 7.147846 TGTCTATTCTACAAGATGCTCATGACA 60.148 37.037 0.00 0.00 0.00 3.58
503 504 7.168972 GTCTATTCTACAAGATGCTCATGACAC 59.831 40.741 0.00 0.00 0.00 3.67
504 505 4.806640 TCTACAAGATGCTCATGACACA 57.193 40.909 0.00 0.00 0.00 3.72
505 506 4.752146 TCTACAAGATGCTCATGACACAG 58.248 43.478 0.00 0.00 0.00 3.66
506 507 3.413846 ACAAGATGCTCATGACACAGT 57.586 42.857 0.00 0.00 0.00 3.55
507 508 3.748083 ACAAGATGCTCATGACACAGTT 58.252 40.909 0.00 0.00 0.00 3.16
508 509 4.139786 ACAAGATGCTCATGACACAGTTT 58.860 39.130 0.00 0.00 0.00 2.66
509 510 4.581824 ACAAGATGCTCATGACACAGTTTT 59.418 37.500 0.00 0.00 0.00 2.43
510 511 5.152097 CAAGATGCTCATGACACAGTTTTC 58.848 41.667 0.00 0.00 0.00 2.29
511 512 4.649692 AGATGCTCATGACACAGTTTTCT 58.350 39.130 0.00 0.00 0.00 2.52
523 524 7.819644 TGACACAGTTTTCTTATTGGATCATG 58.180 34.615 0.00 0.00 0.00 3.07
559 560 6.607689 GTGACCAACACGATAAATTTGATCA 58.392 36.000 0.00 0.00 39.78 2.92
607 609 8.885494 AACTTAGAGATTGATGTAGCAAGATC 57.115 34.615 0.00 0.00 0.00 2.75
843 845 1.140052 AGTTGTCACGGTGGTTGATCA 59.860 47.619 8.50 0.00 0.00 2.92
1258 1269 5.425539 CCATCTGGTAAGGAAGGAGTAAGAA 59.574 44.000 0.00 0.00 0.00 2.52
1327 1338 2.682952 CTTGCAGATTCGCATGGATC 57.317 50.000 0.00 0.00 42.62 3.36
1328 1339 0.939419 TTGCAGATTCGCATGGATCG 59.061 50.000 0.00 0.00 42.62 3.69
1329 1340 0.104671 TGCAGATTCGCATGGATCGA 59.895 50.000 0.00 0.00 36.86 3.59
1354 1365 9.793252 GATGCACATATAATTGTTCTCTGTTTT 57.207 29.630 0.00 0.00 0.00 2.43
1372 1383 6.097554 TCTGTTTTCCAATGCCTGAAACTTAA 59.902 34.615 0.00 0.00 30.64 1.85
1384 1398 5.678616 GCCTGAAACTTAAACTTGTGCTTGA 60.679 40.000 0.00 0.00 0.00 3.02
1399 1413 8.526147 ACTTGTGCTTGAGATTGCTAATTTATT 58.474 29.630 0.00 0.00 0.00 1.40
1447 1465 8.609176 GCCGTCTAATTGATTTGTTTCATACTA 58.391 33.333 0.00 0.00 0.00 1.82
2531 2564 6.183360 TGGGAGAAGCGTTTTAAGATGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
2700 2734 0.758734 CCTGGCCAGATAACATCCGA 59.241 55.000 34.91 0.00 0.00 4.55
3591 3891 0.109827 CATGTGCAATGGCGTTTCGA 60.110 50.000 0.00 0.00 45.35 3.71
3693 3997 4.864704 TTTGCCCTTGATTTTACTCACC 57.135 40.909 0.00 0.00 0.00 4.02
3730 4034 5.745312 ATCTTGTACAGATGAGTTGTCCA 57.255 39.130 0.00 0.00 41.13 4.02
3763 4067 2.553028 GCCTCCACTTTCCATGACTCAA 60.553 50.000 0.00 0.00 0.00 3.02
3977 4294 3.845398 TCCCCATTTCATTTGGCATTTCT 59.155 39.130 0.00 0.00 32.60 2.52
4616 4955 9.319143 CATTAGTAGAGAAGTATGTTTCCCTTG 57.681 37.037 0.00 0.00 0.00 3.61
5675 6059 2.095567 CCGTTGGCTGTTCAATCAGAAG 60.096 50.000 0.00 0.00 36.78 2.85
5682 6066 7.707624 TGGCTGTTCAATCAGAAGAATAATT 57.292 32.000 0.00 0.00 36.78 1.40
5728 6112 2.607635 CTGCACACGGGTACATATGAAC 59.392 50.000 10.38 0.00 0.00 3.18
5756 6140 9.078753 CACCTTTCAAAAATGTACTTTTAACGT 57.921 29.630 7.12 0.00 36.01 3.99
5949 6357 3.624326 TTCCATGAAACTTTCTGCACG 57.376 42.857 0.00 0.00 0.00 5.34
5962 6370 6.280643 ACTTTCTGCACGCACATAGAATATA 58.719 36.000 0.00 0.00 0.00 0.86
5979 6387 2.427540 ATAGAGATGTGCGCGCCCTC 62.428 60.000 30.77 26.03 0.00 4.30
6009 6417 8.555166 TTTCAGAACGTTTTGACATACATTTC 57.445 30.769 20.01 0.00 0.00 2.17
6064 6472 1.679944 CGGGTTCATCCATGCACTTCT 60.680 52.381 0.00 0.00 38.11 2.85
6244 6652 5.128663 TCAATAAAGGATCTCCGTCATGTGA 59.871 40.000 0.00 0.00 42.08 3.58
6312 6720 6.535508 AGGTGATGTTTTTCTAGCGATACTTC 59.464 38.462 0.00 0.00 0.00 3.01
6337 6745 7.763528 TCTGTCAAAAACTTTATTGTGCATTGT 59.236 29.630 0.00 0.00 0.00 2.71
6338 6746 8.932945 TGTCAAAAACTTTATTGTGCATTGTA 57.067 26.923 0.00 0.00 0.00 2.41
6339 6747 8.812329 TGTCAAAAACTTTATTGTGCATTGTAC 58.188 29.630 0.00 0.00 0.00 2.90
6340 6748 7.995998 GTCAAAAACTTTATTGTGCATTGTACG 59.004 33.333 0.00 0.00 0.00 3.67
6355 6763 1.826096 TGTACGTAAGCTGGTATGCCA 59.174 47.619 1.39 1.39 42.24 4.92
6372 6780 8.535335 TGGTATGCCAAGCAAATTTATTTTAGA 58.465 29.630 0.00 0.00 43.62 2.10
6526 6936 9.937577 GTTTTCAAATTTGCGAATAGTATTGTC 57.062 29.630 13.54 0.00 0.00 3.18
6527 6937 8.682128 TTTCAAATTTGCGAATAGTATTGTCC 57.318 30.769 13.54 0.00 0.00 4.02
6528 6938 7.384439 TCAAATTTGCGAATAGTATTGTCCA 57.616 32.000 13.54 0.00 0.00 4.02
6529 6939 7.995289 TCAAATTTGCGAATAGTATTGTCCAT 58.005 30.769 13.54 0.00 0.00 3.41
6530 6940 8.128582 TCAAATTTGCGAATAGTATTGTCCATC 58.871 33.333 13.54 0.00 0.00 3.51
6531 6941 7.807977 AATTTGCGAATAGTATTGTCCATCT 57.192 32.000 0.00 0.00 0.00 2.90
6570 6992 4.994220 AAAACAACCGAACACCAAAAAC 57.006 36.364 0.00 0.00 0.00 2.43
6572 6994 2.172679 ACAACCGAACACCAAAAACCT 58.827 42.857 0.00 0.00 0.00 3.50
6573 6995 3.354467 ACAACCGAACACCAAAAACCTA 58.646 40.909 0.00 0.00 0.00 3.08
6577 7003 4.129380 ACCGAACACCAAAAACCTACTAC 58.871 43.478 0.00 0.00 0.00 2.73
6600 7026 1.453155 ATTTGGTTGAGGCGCTACAG 58.547 50.000 7.64 0.00 0.00 2.74
6605 7031 1.469423 GGTTGAGGCGCTACAGTACTC 60.469 57.143 7.64 3.76 0.00 2.59
6606 7032 1.201647 GTTGAGGCGCTACAGTACTCA 59.798 52.381 7.64 6.78 36.49 3.41
6609 7035 1.473278 GAGGCGCTACAGTACTCAACT 59.527 52.381 7.64 0.00 39.81 3.16
6610 7036 2.681848 GAGGCGCTACAGTACTCAACTA 59.318 50.000 7.64 0.00 35.76 2.24
6621 7047 4.681942 CAGTACTCAACTAAGTCACTGCAC 59.318 45.833 0.00 0.00 35.76 4.57
6628 7054 2.558795 ACTAAGTCACTGCACTGTCGAT 59.441 45.455 0.00 0.00 0.00 3.59
6629 7055 2.533266 AAGTCACTGCACTGTCGATT 57.467 45.000 0.00 0.00 0.00 3.34
6653 7079 2.730382 TCACTACGGAGCATGGTCTAA 58.270 47.619 23.24 9.09 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.163010 CCACGCATGAGCTCTTTTTCAT 59.837 45.455 16.19 0.00 39.10 2.57
7 8 1.537202 ACCACGCATGAGCTCTTTTTC 59.463 47.619 16.19 0.00 39.10 2.29
8 9 1.609208 ACCACGCATGAGCTCTTTTT 58.391 45.000 16.19 0.00 39.10 1.94
9 10 2.076863 GTACCACGCATGAGCTCTTTT 58.923 47.619 16.19 0.00 39.10 2.27
10 11 1.001974 TGTACCACGCATGAGCTCTTT 59.998 47.619 16.19 0.00 39.10 2.52
11 12 0.608130 TGTACCACGCATGAGCTCTT 59.392 50.000 16.19 5.66 39.10 2.85
12 13 0.608130 TTGTACCACGCATGAGCTCT 59.392 50.000 16.19 0.00 39.10 4.09
13 14 1.394917 CTTTGTACCACGCATGAGCTC 59.605 52.381 6.82 6.82 39.10 4.09
14 15 1.270839 ACTTTGTACCACGCATGAGCT 60.271 47.619 0.00 0.00 39.10 4.09
15 16 1.156736 ACTTTGTACCACGCATGAGC 58.843 50.000 0.00 0.00 37.42 4.26
16 17 2.805671 TCAACTTTGTACCACGCATGAG 59.194 45.455 0.00 0.00 0.00 2.90
17 18 2.839975 TCAACTTTGTACCACGCATGA 58.160 42.857 0.00 0.00 0.00 3.07
19 20 3.472652 TCTTCAACTTTGTACCACGCAT 58.527 40.909 0.00 0.00 0.00 4.73
20 21 2.907634 TCTTCAACTTTGTACCACGCA 58.092 42.857 0.00 0.00 0.00 5.24
21 22 4.483476 AATCTTCAACTTTGTACCACGC 57.517 40.909 0.00 0.00 0.00 5.34
22 23 5.212194 CCAAATCTTCAACTTTGTACCACG 58.788 41.667 0.00 0.00 31.83 4.94
23 24 5.300792 TCCCAAATCTTCAACTTTGTACCAC 59.699 40.000 0.00 0.00 31.83 4.16
24 25 5.450453 TCCCAAATCTTCAACTTTGTACCA 58.550 37.500 0.00 0.00 31.83 3.25
25 26 6.208599 TCATCCCAAATCTTCAACTTTGTACC 59.791 38.462 0.00 0.00 31.83 3.34
26 27 7.214467 TCATCCCAAATCTTCAACTTTGTAC 57.786 36.000 0.00 0.00 31.83 2.90
27 28 7.831691 TTCATCCCAAATCTTCAACTTTGTA 57.168 32.000 0.00 0.00 31.83 2.41
28 29 6.729690 TTCATCCCAAATCTTCAACTTTGT 57.270 33.333 0.00 0.00 31.83 2.83
29 30 7.156673 ACATTCATCCCAAATCTTCAACTTTG 58.843 34.615 0.00 0.00 33.20 2.77
30 31 7.307131 ACATTCATCCCAAATCTTCAACTTT 57.693 32.000 0.00 0.00 0.00 2.66
31 32 6.923199 ACATTCATCCCAAATCTTCAACTT 57.077 33.333 0.00 0.00 0.00 2.66
32 33 6.923199 AACATTCATCCCAAATCTTCAACT 57.077 33.333 0.00 0.00 0.00 3.16
33 34 6.747280 CGTAACATTCATCCCAAATCTTCAAC 59.253 38.462 0.00 0.00 0.00 3.18
34 35 6.127758 CCGTAACATTCATCCCAAATCTTCAA 60.128 38.462 0.00 0.00 0.00 2.69
35 36 5.356751 CCGTAACATTCATCCCAAATCTTCA 59.643 40.000 0.00 0.00 0.00 3.02
36 37 5.588648 TCCGTAACATTCATCCCAAATCTTC 59.411 40.000 0.00 0.00 0.00 2.87
37 38 5.505780 TCCGTAACATTCATCCCAAATCTT 58.494 37.500 0.00 0.00 0.00 2.40
38 39 5.110814 TCCGTAACATTCATCCCAAATCT 57.889 39.130 0.00 0.00 0.00 2.40
39 40 5.357032 AGTTCCGTAACATTCATCCCAAATC 59.643 40.000 0.00 0.00 38.12 2.17
40 41 5.261216 AGTTCCGTAACATTCATCCCAAAT 58.739 37.500 0.00 0.00 38.12 2.32
41 42 4.658063 AGTTCCGTAACATTCATCCCAAA 58.342 39.130 0.00 0.00 38.12 3.28
42 43 4.295141 AGTTCCGTAACATTCATCCCAA 57.705 40.909 0.00 0.00 38.12 4.12
43 44 3.992943 AGTTCCGTAACATTCATCCCA 57.007 42.857 0.00 0.00 38.12 4.37
44 45 6.937436 ATTAAGTTCCGTAACATTCATCCC 57.063 37.500 0.00 0.00 38.12 3.85
45 46 7.066525 TCCAATTAAGTTCCGTAACATTCATCC 59.933 37.037 0.00 0.00 38.12 3.51
46 47 7.981142 TCCAATTAAGTTCCGTAACATTCATC 58.019 34.615 0.00 0.00 38.12 2.92
47 48 7.827236 TCTCCAATTAAGTTCCGTAACATTCAT 59.173 33.333 0.00 0.00 38.12 2.57
48 49 7.162761 TCTCCAATTAAGTTCCGTAACATTCA 58.837 34.615 0.00 0.00 38.12 2.57
49 50 7.605410 TCTCCAATTAAGTTCCGTAACATTC 57.395 36.000 0.00 0.00 38.12 2.67
50 51 7.067008 CCATCTCCAATTAAGTTCCGTAACATT 59.933 37.037 0.00 0.00 38.12 2.71
51 52 6.542370 CCATCTCCAATTAAGTTCCGTAACAT 59.458 38.462 0.00 0.00 38.12 2.71
52 53 5.878116 CCATCTCCAATTAAGTTCCGTAACA 59.122 40.000 0.00 0.00 38.12 2.41
53 54 5.220796 GCCATCTCCAATTAAGTTCCGTAAC 60.221 44.000 0.00 0.00 35.72 2.50
54 55 4.879545 GCCATCTCCAATTAAGTTCCGTAA 59.120 41.667 0.00 0.00 0.00 3.18
55 56 4.080807 TGCCATCTCCAATTAAGTTCCGTA 60.081 41.667 0.00 0.00 0.00 4.02
56 57 3.279434 GCCATCTCCAATTAAGTTCCGT 58.721 45.455 0.00 0.00 0.00 4.69
57 58 3.065371 GTGCCATCTCCAATTAAGTTCCG 59.935 47.826 0.00 0.00 0.00 4.30
58 59 4.016444 TGTGCCATCTCCAATTAAGTTCC 58.984 43.478 0.00 0.00 0.00 3.62
59 60 5.841957 ATGTGCCATCTCCAATTAAGTTC 57.158 39.130 0.00 0.00 0.00 3.01
60 61 6.610075 AAATGTGCCATCTCCAATTAAGTT 57.390 33.333 0.00 0.00 0.00 2.66
61 62 6.014327 ACAAAATGTGCCATCTCCAATTAAGT 60.014 34.615 0.00 0.00 0.00 2.24
62 63 6.311935 CACAAAATGTGCCATCTCCAATTAAG 59.688 38.462 0.00 0.00 41.89 1.85
63 64 6.164876 CACAAAATGTGCCATCTCCAATTAA 58.835 36.000 0.00 0.00 41.89 1.40
64 65 5.722263 CACAAAATGTGCCATCTCCAATTA 58.278 37.500 0.00 0.00 41.89 1.40
65 66 4.571919 CACAAAATGTGCCATCTCCAATT 58.428 39.130 0.00 0.00 41.89 2.32
66 67 4.196626 CACAAAATGTGCCATCTCCAAT 57.803 40.909 0.00 0.00 41.89 3.16
67 68 3.663995 CACAAAATGTGCCATCTCCAA 57.336 42.857 0.00 0.00 41.89 3.53
109 110 9.863845 TGTGATAGAAAGTCGATAAAATACACA 57.136 29.630 0.00 0.00 0.00 3.72
111 112 9.529325 CCTGTGATAGAAAGTCGATAAAATACA 57.471 33.333 0.00 0.00 0.00 2.29
112 113 9.530633 ACCTGTGATAGAAAGTCGATAAAATAC 57.469 33.333 0.00 0.00 0.00 1.89
114 115 9.449719 AAACCTGTGATAGAAAGTCGATAAAAT 57.550 29.630 0.00 0.00 0.00 1.82
115 116 8.717821 CAAACCTGTGATAGAAAGTCGATAAAA 58.282 33.333 0.00 0.00 0.00 1.52
116 117 8.092068 TCAAACCTGTGATAGAAAGTCGATAAA 58.908 33.333 0.00 0.00 0.00 1.40
117 118 7.544566 GTCAAACCTGTGATAGAAAGTCGATAA 59.455 37.037 0.00 0.00 0.00 1.75
118 119 7.033791 GTCAAACCTGTGATAGAAAGTCGATA 58.966 38.462 0.00 0.00 0.00 2.92
119 120 5.869888 GTCAAACCTGTGATAGAAAGTCGAT 59.130 40.000 0.00 0.00 0.00 3.59
120 121 5.010719 AGTCAAACCTGTGATAGAAAGTCGA 59.989 40.000 0.00 0.00 0.00 4.20
121 122 5.230942 AGTCAAACCTGTGATAGAAAGTCG 58.769 41.667 0.00 0.00 0.00 4.18
122 123 6.706270 TGAAGTCAAACCTGTGATAGAAAGTC 59.294 38.462 0.00 0.00 0.00 3.01
123 124 6.591935 TGAAGTCAAACCTGTGATAGAAAGT 58.408 36.000 0.00 0.00 0.00 2.66
124 125 7.678947 ATGAAGTCAAACCTGTGATAGAAAG 57.321 36.000 0.00 0.00 0.00 2.62
125 126 8.463930 AAATGAAGTCAAACCTGTGATAGAAA 57.536 30.769 0.00 0.00 0.00 2.52
126 127 9.739276 ATAAATGAAGTCAAACCTGTGATAGAA 57.261 29.630 0.00 0.00 0.00 2.10
130 131 9.466497 ACATATAAATGAAGTCAAACCTGTGAT 57.534 29.630 0.00 0.00 36.54 3.06
131 132 8.862325 ACATATAAATGAAGTCAAACCTGTGA 57.138 30.769 0.00 0.00 36.54 3.58
161 162 9.541143 GTTTTCCCATGTCTTTAGAAAAATTGA 57.459 29.630 0.00 0.00 37.95 2.57
162 163 9.546428 AGTTTTCCCATGTCTTTAGAAAAATTG 57.454 29.630 0.00 0.00 37.95 2.32
163 164 9.764363 GAGTTTTCCCATGTCTTTAGAAAAATT 57.236 29.630 0.00 0.00 37.95 1.82
164 165 8.367911 GGAGTTTTCCCATGTCTTTAGAAAAAT 58.632 33.333 0.00 0.00 37.95 1.82
165 166 7.722363 GGAGTTTTCCCATGTCTTTAGAAAAA 58.278 34.615 0.00 0.00 37.95 1.94
166 167 7.284919 GGAGTTTTCCCATGTCTTTAGAAAA 57.715 36.000 0.00 0.00 37.53 2.29
167 168 6.894339 GGAGTTTTCCCATGTCTTTAGAAA 57.106 37.500 0.00 0.00 37.53 2.52
181 182 4.814771 CGGTAGATTATGTGGGAGTTTTCC 59.185 45.833 0.00 0.00 43.23 3.13
182 183 5.425630 ACGGTAGATTATGTGGGAGTTTTC 58.574 41.667 0.00 0.00 0.00 2.29
183 184 5.431179 ACGGTAGATTATGTGGGAGTTTT 57.569 39.130 0.00 0.00 0.00 2.43
184 185 5.452917 GCTACGGTAGATTATGTGGGAGTTT 60.453 44.000 19.02 0.00 0.00 2.66
185 186 4.038883 GCTACGGTAGATTATGTGGGAGTT 59.961 45.833 19.02 0.00 0.00 3.01
186 187 3.573110 GCTACGGTAGATTATGTGGGAGT 59.427 47.826 19.02 0.00 0.00 3.85
187 188 3.572682 TGCTACGGTAGATTATGTGGGAG 59.427 47.826 19.02 0.00 0.00 4.30
188 189 3.568443 TGCTACGGTAGATTATGTGGGA 58.432 45.455 19.02 0.00 0.00 4.37
189 190 4.330944 TTGCTACGGTAGATTATGTGGG 57.669 45.455 19.02 0.00 0.00 4.61
190 191 6.671614 TTTTTGCTACGGTAGATTATGTGG 57.328 37.500 19.02 0.00 0.00 4.17
191 192 7.693952 ACATTTTTGCTACGGTAGATTATGTG 58.306 34.615 19.02 11.51 0.00 3.21
192 193 7.859325 ACATTTTTGCTACGGTAGATTATGT 57.141 32.000 19.02 14.70 0.00 2.29
193 194 9.811655 CATACATTTTTGCTACGGTAGATTATG 57.188 33.333 19.02 14.18 0.00 1.90
194 195 9.555727 ACATACATTTTTGCTACGGTAGATTAT 57.444 29.630 19.02 1.92 0.00 1.28
195 196 8.822855 CACATACATTTTTGCTACGGTAGATTA 58.177 33.333 19.02 1.60 0.00 1.75
196 197 7.551262 TCACATACATTTTTGCTACGGTAGATT 59.449 33.333 19.02 0.00 0.00 2.40
197 198 7.011109 GTCACATACATTTTTGCTACGGTAGAT 59.989 37.037 19.02 0.11 0.00 1.98
198 199 6.311935 GTCACATACATTTTTGCTACGGTAGA 59.688 38.462 19.02 1.65 0.00 2.59
199 200 6.312918 AGTCACATACATTTTTGCTACGGTAG 59.687 38.462 10.83 10.83 0.00 3.18
200 201 6.167685 AGTCACATACATTTTTGCTACGGTA 58.832 36.000 0.00 0.00 0.00 4.02
201 202 5.001232 AGTCACATACATTTTTGCTACGGT 58.999 37.500 0.00 0.00 0.00 4.83
202 203 5.545658 AGTCACATACATTTTTGCTACGG 57.454 39.130 0.00 0.00 0.00 4.02
203 204 7.739295 AGTAAGTCACATACATTTTTGCTACG 58.261 34.615 0.00 0.00 0.00 3.51
204 205 9.893305 AAAGTAAGTCACATACATTTTTGCTAC 57.107 29.630 0.00 0.00 0.00 3.58
206 207 8.850156 AGAAAGTAAGTCACATACATTTTTGCT 58.150 29.630 0.00 0.00 0.00 3.91
207 208 8.905702 CAGAAAGTAAGTCACATACATTTTTGC 58.094 33.333 0.00 0.00 0.00 3.68
210 211 9.003658 CCTCAGAAAGTAAGTCACATACATTTT 57.996 33.333 0.00 0.00 0.00 1.82
211 212 7.119846 GCCTCAGAAAGTAAGTCACATACATTT 59.880 37.037 0.00 0.00 0.00 2.32
212 213 6.595716 GCCTCAGAAAGTAAGTCACATACATT 59.404 38.462 0.00 0.00 0.00 2.71
213 214 6.109359 GCCTCAGAAAGTAAGTCACATACAT 58.891 40.000 0.00 0.00 0.00 2.29
214 215 5.479306 GCCTCAGAAAGTAAGTCACATACA 58.521 41.667 0.00 0.00 0.00 2.29
215 216 4.870991 GGCCTCAGAAAGTAAGTCACATAC 59.129 45.833 0.00 0.00 0.00 2.39
216 217 4.530553 TGGCCTCAGAAAGTAAGTCACATA 59.469 41.667 3.32 0.00 0.00 2.29
217 218 3.327757 TGGCCTCAGAAAGTAAGTCACAT 59.672 43.478 3.32 0.00 0.00 3.21
218 219 2.703536 TGGCCTCAGAAAGTAAGTCACA 59.296 45.455 3.32 0.00 0.00 3.58
219 220 3.067833 GTGGCCTCAGAAAGTAAGTCAC 58.932 50.000 3.32 0.00 0.00 3.67
220 221 2.703536 TGTGGCCTCAGAAAGTAAGTCA 59.296 45.455 3.32 0.00 0.00 3.41
221 222 3.402628 TGTGGCCTCAGAAAGTAAGTC 57.597 47.619 3.32 0.00 0.00 3.01
222 223 4.532521 ACTATGTGGCCTCAGAAAGTAAGT 59.467 41.667 13.77 0.00 0.00 2.24
223 224 5.091261 ACTATGTGGCCTCAGAAAGTAAG 57.909 43.478 13.77 0.00 0.00 2.34
224 225 4.381612 CGACTATGTGGCCTCAGAAAGTAA 60.382 45.833 13.77 0.00 0.00 2.24
225 226 3.130516 CGACTATGTGGCCTCAGAAAGTA 59.869 47.826 13.77 0.00 0.00 2.24
226 227 2.093973 CGACTATGTGGCCTCAGAAAGT 60.094 50.000 13.77 15.07 0.00 2.66
227 228 2.544685 CGACTATGTGGCCTCAGAAAG 58.455 52.381 13.77 12.22 0.00 2.62
228 229 1.207089 CCGACTATGTGGCCTCAGAAA 59.793 52.381 13.77 0.75 0.00 2.52
229 230 0.824109 CCGACTATGTGGCCTCAGAA 59.176 55.000 13.77 3.24 0.00 3.02
230 231 1.043116 CCCGACTATGTGGCCTCAGA 61.043 60.000 13.77 7.85 0.00 3.27
231 232 1.043116 TCCCGACTATGTGGCCTCAG 61.043 60.000 13.77 3.12 0.00 3.35
232 233 1.001120 TCCCGACTATGTGGCCTCA 59.999 57.895 10.45 10.45 0.00 3.86
233 234 0.755698 TCTCCCGACTATGTGGCCTC 60.756 60.000 3.32 0.00 0.00 4.70
234 235 0.757188 CTCTCCCGACTATGTGGCCT 60.757 60.000 3.32 0.00 0.00 5.19
235 236 1.043673 ACTCTCCCGACTATGTGGCC 61.044 60.000 0.00 0.00 0.00 5.36
236 237 0.386113 GACTCTCCCGACTATGTGGC 59.614 60.000 0.00 0.00 0.00 5.01
237 238 2.060050 AGACTCTCCCGACTATGTGG 57.940 55.000 0.00 0.00 0.00 4.17
238 239 3.444034 TCAAAGACTCTCCCGACTATGTG 59.556 47.826 0.00 0.00 0.00 3.21
239 240 3.698289 TCAAAGACTCTCCCGACTATGT 58.302 45.455 0.00 0.00 0.00 2.29
240 241 4.927978 ATCAAAGACTCTCCCGACTATG 57.072 45.455 0.00 0.00 0.00 2.23
241 242 5.941555 AAATCAAAGACTCTCCCGACTAT 57.058 39.130 0.00 0.00 0.00 2.12
242 243 5.480772 AGAAAATCAAAGACTCTCCCGACTA 59.519 40.000 0.00 0.00 0.00 2.59
243 244 4.284746 AGAAAATCAAAGACTCTCCCGACT 59.715 41.667 0.00 0.00 0.00 4.18
244 245 4.570930 AGAAAATCAAAGACTCTCCCGAC 58.429 43.478 0.00 0.00 0.00 4.79
245 246 4.528596 AGAGAAAATCAAAGACTCTCCCGA 59.471 41.667 0.00 0.00 34.34 5.14
246 247 4.629200 CAGAGAAAATCAAAGACTCTCCCG 59.371 45.833 0.00 0.00 36.06 5.14
247 248 5.799213 TCAGAGAAAATCAAAGACTCTCCC 58.201 41.667 0.00 0.00 36.06 4.30
248 249 7.736447 TTTCAGAGAAAATCAAAGACTCTCC 57.264 36.000 0.00 0.00 36.06 3.71
259 260 6.459435 GGCTAAGGCTGATTTCAGAGAAAATC 60.459 42.308 11.70 3.07 46.59 2.17
260 261 5.359292 GGCTAAGGCTGATTTCAGAGAAAAT 59.641 40.000 11.70 0.00 46.59 1.82
261 262 4.702131 GGCTAAGGCTGATTTCAGAGAAAA 59.298 41.667 11.70 0.00 46.59 2.29
262 263 4.263462 TGGCTAAGGCTGATTTCAGAGAAA 60.263 41.667 11.70 0.00 46.59 2.52
263 264 3.264193 TGGCTAAGGCTGATTTCAGAGAA 59.736 43.478 11.70 0.00 46.59 2.87
264 265 2.840038 TGGCTAAGGCTGATTTCAGAGA 59.160 45.455 11.70 0.00 46.59 3.10
265 266 3.272574 TGGCTAAGGCTGATTTCAGAG 57.727 47.619 11.70 1.26 46.59 3.35
266 267 3.939740 ATGGCTAAGGCTGATTTCAGA 57.060 42.857 11.70 0.00 46.59 3.27
267 268 4.996788 AAATGGCTAAGGCTGATTTCAG 57.003 40.909 3.13 3.13 46.40 3.02
268 269 6.127366 CCTTAAAATGGCTAAGGCTGATTTCA 60.127 38.462 0.00 0.00 39.16 2.69
269 270 6.127338 ACCTTAAAATGGCTAAGGCTGATTTC 60.127 38.462 9.51 0.00 46.45 2.17
270 271 5.721480 ACCTTAAAATGGCTAAGGCTGATTT 59.279 36.000 9.51 0.00 46.45 2.17
271 272 5.272402 ACCTTAAAATGGCTAAGGCTGATT 58.728 37.500 9.51 0.00 46.45 2.57
272 273 4.871822 ACCTTAAAATGGCTAAGGCTGAT 58.128 39.130 9.51 0.00 46.45 2.90
273 274 4.316025 ACCTTAAAATGGCTAAGGCTGA 57.684 40.909 9.51 0.00 46.45 4.26
274 275 4.947388 TGTACCTTAAAATGGCTAAGGCTG 59.053 41.667 9.51 0.00 46.45 4.85
275 276 5.187621 TGTACCTTAAAATGGCTAAGGCT 57.812 39.130 9.51 0.00 46.45 4.58
276 277 4.338400 CCTGTACCTTAAAATGGCTAAGGC 59.662 45.833 9.51 0.00 46.45 4.35
278 279 5.293569 CGACCTGTACCTTAAAATGGCTAAG 59.706 44.000 0.00 0.00 0.00 2.18
279 280 5.180271 CGACCTGTACCTTAAAATGGCTAA 58.820 41.667 0.00 0.00 0.00 3.09
280 281 4.223477 ACGACCTGTACCTTAAAATGGCTA 59.777 41.667 0.00 0.00 0.00 3.93
281 282 3.008704 ACGACCTGTACCTTAAAATGGCT 59.991 43.478 0.00 0.00 0.00 4.75
282 283 3.340928 ACGACCTGTACCTTAAAATGGC 58.659 45.455 0.00 0.00 0.00 4.40
283 284 4.379082 GCAACGACCTGTACCTTAAAATGG 60.379 45.833 0.00 0.00 0.00 3.16
284 285 4.454504 AGCAACGACCTGTACCTTAAAATG 59.545 41.667 0.00 0.00 0.00 2.32
285 286 4.648651 AGCAACGACCTGTACCTTAAAAT 58.351 39.130 0.00 0.00 0.00 1.82
286 287 4.060205 GAGCAACGACCTGTACCTTAAAA 58.940 43.478 0.00 0.00 0.00 1.52
287 288 3.069872 TGAGCAACGACCTGTACCTTAAA 59.930 43.478 0.00 0.00 0.00 1.52
288 289 2.629137 TGAGCAACGACCTGTACCTTAA 59.371 45.455 0.00 0.00 0.00 1.85
289 290 2.029649 GTGAGCAACGACCTGTACCTTA 60.030 50.000 0.00 0.00 0.00 2.69
290 291 1.045407 TGAGCAACGACCTGTACCTT 58.955 50.000 0.00 0.00 0.00 3.50
291 292 0.317479 GTGAGCAACGACCTGTACCT 59.683 55.000 0.00 0.00 0.00 3.08
292 293 0.032952 TGTGAGCAACGACCTGTACC 59.967 55.000 0.00 0.00 0.00 3.34
293 294 1.792949 CTTGTGAGCAACGACCTGTAC 59.207 52.381 0.00 0.00 0.00 2.90
294 295 1.684450 TCTTGTGAGCAACGACCTGTA 59.316 47.619 0.00 0.00 0.00 2.74
295 296 0.464036 TCTTGTGAGCAACGACCTGT 59.536 50.000 0.00 0.00 0.00 4.00
296 297 1.800805 ATCTTGTGAGCAACGACCTG 58.199 50.000 0.00 0.00 0.00 4.00
297 298 2.224281 TGAATCTTGTGAGCAACGACCT 60.224 45.455 0.00 0.00 0.00 3.85
298 299 2.143122 TGAATCTTGTGAGCAACGACC 58.857 47.619 0.00 0.00 0.00 4.79
299 300 4.153117 AGAATGAATCTTGTGAGCAACGAC 59.847 41.667 0.00 0.00 33.39 4.34
300 301 4.152938 CAGAATGAATCTTGTGAGCAACGA 59.847 41.667 0.00 0.00 39.69 3.85
301 302 4.152938 TCAGAATGAATCTTGTGAGCAACG 59.847 41.667 0.00 0.00 45.97 4.10
302 303 5.618056 TCAGAATGAATCTTGTGAGCAAC 57.382 39.130 0.00 0.00 45.97 4.17
319 320 6.826231 TGGTTCTGACATTTAACACTTCAGAA 59.174 34.615 7.99 7.99 46.23 3.02
320 321 6.353323 TGGTTCTGACATTTAACACTTCAGA 58.647 36.000 0.00 0.00 40.69 3.27
321 322 6.618287 TGGTTCTGACATTTAACACTTCAG 57.382 37.500 0.00 0.00 35.93 3.02
322 323 7.397892 TTTGGTTCTGACATTTAACACTTCA 57.602 32.000 0.00 0.00 0.00 3.02
323 324 6.918022 CCTTTGGTTCTGACATTTAACACTTC 59.082 38.462 0.00 0.00 0.00 3.01
324 325 6.379988 ACCTTTGGTTCTGACATTTAACACTT 59.620 34.615 0.00 0.00 27.29 3.16
325 326 5.891551 ACCTTTGGTTCTGACATTTAACACT 59.108 36.000 0.00 0.00 27.29 3.55
326 327 5.977129 CACCTTTGGTTCTGACATTTAACAC 59.023 40.000 0.00 0.00 31.02 3.32
327 328 5.654650 ACACCTTTGGTTCTGACATTTAACA 59.345 36.000 0.00 0.00 31.02 2.41
328 329 6.144078 ACACCTTTGGTTCTGACATTTAAC 57.856 37.500 0.00 0.00 31.02 2.01
329 330 5.888724 TGACACCTTTGGTTCTGACATTTAA 59.111 36.000 0.00 0.00 31.02 1.52
330 331 5.298276 GTGACACCTTTGGTTCTGACATTTA 59.702 40.000 0.00 0.00 31.02 1.40
331 332 4.097892 GTGACACCTTTGGTTCTGACATTT 59.902 41.667 0.00 0.00 31.02 2.32
332 333 3.632145 GTGACACCTTTGGTTCTGACATT 59.368 43.478 0.00 0.00 31.02 2.71
333 334 3.214328 GTGACACCTTTGGTTCTGACAT 58.786 45.455 0.00 0.00 31.02 3.06
334 335 2.026729 TGTGACACCTTTGGTTCTGACA 60.027 45.455 2.45 0.00 31.02 3.58
335 336 2.639065 TGTGACACCTTTGGTTCTGAC 58.361 47.619 2.45 0.00 31.02 3.51
336 337 3.358111 TTGTGACACCTTTGGTTCTGA 57.642 42.857 2.45 0.00 31.02 3.27
337 338 4.654091 ATTTGTGACACCTTTGGTTCTG 57.346 40.909 2.45 0.00 31.02 3.02
338 339 6.207417 CAGATATTTGTGACACCTTTGGTTCT 59.793 38.462 2.45 0.00 31.02 3.01
339 340 6.381801 CAGATATTTGTGACACCTTTGGTTC 58.618 40.000 2.45 0.00 31.02 3.62
340 341 5.243730 CCAGATATTTGTGACACCTTTGGTT 59.756 40.000 2.45 0.00 31.02 3.67
341 342 4.766891 CCAGATATTTGTGACACCTTTGGT 59.233 41.667 2.45 0.00 35.62 3.67
342 343 4.380867 GCCAGATATTTGTGACACCTTTGG 60.381 45.833 2.45 3.08 0.00 3.28
343 344 4.460382 AGCCAGATATTTGTGACACCTTTG 59.540 41.667 2.45 0.00 0.00 2.77
344 345 4.666512 AGCCAGATATTTGTGACACCTTT 58.333 39.130 2.45 0.00 0.00 3.11
345 346 4.307032 AGCCAGATATTTGTGACACCTT 57.693 40.909 2.45 0.00 0.00 3.50
346 347 4.384208 GGTAGCCAGATATTTGTGACACCT 60.384 45.833 2.45 0.00 0.00 4.00
347 348 3.877508 GGTAGCCAGATATTTGTGACACC 59.122 47.826 2.45 0.00 0.00 4.16
348 349 4.513442 TGGTAGCCAGATATTTGTGACAC 58.487 43.478 0.00 0.00 0.00 3.67
349 350 4.835284 TGGTAGCCAGATATTTGTGACA 57.165 40.909 0.00 0.00 0.00 3.58
350 351 7.801716 TTTATGGTAGCCAGATATTTGTGAC 57.198 36.000 0.00 0.00 36.75 3.67
351 352 8.995027 AATTTATGGTAGCCAGATATTTGTGA 57.005 30.769 0.00 0.00 36.75 3.58
352 353 9.071276 AGAATTTATGGTAGCCAGATATTTGTG 57.929 33.333 1.36 0.00 36.75 3.33
360 361 8.314751 GCTTCTATAGAATTTATGGTAGCCAGA 58.685 37.037 15.47 0.00 33.00 3.86
361 362 8.317679 AGCTTCTATAGAATTTATGGTAGCCAG 58.682 37.037 15.47 0.31 33.00 4.85
362 363 8.097038 CAGCTTCTATAGAATTTATGGTAGCCA 58.903 37.037 15.47 0.00 32.24 4.75
363 364 7.065204 GCAGCTTCTATAGAATTTATGGTAGCC 59.935 40.741 15.47 0.00 32.24 3.93
364 365 7.604164 TGCAGCTTCTATAGAATTTATGGTAGC 59.396 37.037 15.47 11.58 33.01 3.58
365 366 9.664332 ATGCAGCTTCTATAGAATTTATGGTAG 57.336 33.333 15.47 2.12 33.01 3.18
367 368 8.930846 AATGCAGCTTCTATAGAATTTATGGT 57.069 30.769 15.47 6.60 33.01 3.55
375 376 9.060347 CCAATTCTAAATGCAGCTTCTATAGAA 57.940 33.333 14.42 14.42 33.81 2.10
376 377 8.213679 ACCAATTCTAAATGCAGCTTCTATAGA 58.786 33.333 0.00 0.00 0.00 1.98
377 378 8.388484 ACCAATTCTAAATGCAGCTTCTATAG 57.612 34.615 0.00 0.00 0.00 1.31
378 379 8.213679 AGACCAATTCTAAATGCAGCTTCTATA 58.786 33.333 0.00 0.00 30.17 1.31
379 380 7.059156 AGACCAATTCTAAATGCAGCTTCTAT 58.941 34.615 0.00 0.00 30.17 1.98
380 381 6.418101 AGACCAATTCTAAATGCAGCTTCTA 58.582 36.000 0.00 0.00 30.17 2.10
381 382 5.259632 AGACCAATTCTAAATGCAGCTTCT 58.740 37.500 0.00 0.00 30.17 2.85
382 383 5.573337 AGACCAATTCTAAATGCAGCTTC 57.427 39.130 0.00 0.00 30.17 3.86
383 384 6.094603 CACTAGACCAATTCTAAATGCAGCTT 59.905 38.462 0.00 0.00 36.32 3.74
384 385 5.587844 CACTAGACCAATTCTAAATGCAGCT 59.412 40.000 0.00 0.00 36.32 4.24
385 386 5.355350 ACACTAGACCAATTCTAAATGCAGC 59.645 40.000 0.00 0.00 36.32 5.25
386 387 6.595326 TGACACTAGACCAATTCTAAATGCAG 59.405 38.462 0.00 0.00 36.32 4.41
387 388 6.472016 TGACACTAGACCAATTCTAAATGCA 58.528 36.000 0.00 0.00 36.32 3.96
388 389 6.818644 TCTGACACTAGACCAATTCTAAATGC 59.181 38.462 0.00 0.00 36.32 3.56
389 390 8.824781 CATCTGACACTAGACCAATTCTAAATG 58.175 37.037 0.00 0.00 36.32 2.32
390 391 8.543774 ACATCTGACACTAGACCAATTCTAAAT 58.456 33.333 0.00 0.00 36.32 1.40
391 392 7.907389 ACATCTGACACTAGACCAATTCTAAA 58.093 34.615 0.00 0.00 36.32 1.85
392 393 7.482169 ACATCTGACACTAGACCAATTCTAA 57.518 36.000 0.00 0.00 36.32 2.10
393 394 7.482169 AACATCTGACACTAGACCAATTCTA 57.518 36.000 0.00 0.00 35.55 2.10
394 395 6.365970 AACATCTGACACTAGACCAATTCT 57.634 37.500 0.00 0.00 38.51 2.40
395 396 6.256757 GCTAACATCTGACACTAGACCAATTC 59.743 42.308 0.00 0.00 0.00 2.17
396 397 6.070538 AGCTAACATCTGACACTAGACCAATT 60.071 38.462 0.00 0.00 0.00 2.32
397 398 5.423610 AGCTAACATCTGACACTAGACCAAT 59.576 40.000 0.00 0.00 0.00 3.16
398 399 4.772624 AGCTAACATCTGACACTAGACCAA 59.227 41.667 0.00 0.00 0.00 3.67
399 400 4.344978 AGCTAACATCTGACACTAGACCA 58.655 43.478 0.00 0.00 0.00 4.02
400 401 4.399618 TGAGCTAACATCTGACACTAGACC 59.600 45.833 0.00 0.00 0.00 3.85
401 402 5.568685 TGAGCTAACATCTGACACTAGAC 57.431 43.478 0.00 0.00 0.00 2.59
402 403 6.488344 CCTATGAGCTAACATCTGACACTAGA 59.512 42.308 0.00 0.00 0.00 2.43
403 404 6.488344 TCCTATGAGCTAACATCTGACACTAG 59.512 42.308 0.00 0.00 0.00 2.57
404 405 6.365520 TCCTATGAGCTAACATCTGACACTA 58.634 40.000 0.00 0.00 0.00 2.74
405 406 5.204292 TCCTATGAGCTAACATCTGACACT 58.796 41.667 0.00 0.00 0.00 3.55
406 407 5.521906 TCCTATGAGCTAACATCTGACAC 57.478 43.478 0.00 0.00 0.00 3.67
407 408 5.011431 CCATCCTATGAGCTAACATCTGACA 59.989 44.000 0.00 0.00 0.00 3.58
408 409 5.011533 ACCATCCTATGAGCTAACATCTGAC 59.988 44.000 0.00 0.00 0.00 3.51
409 410 5.150715 ACCATCCTATGAGCTAACATCTGA 58.849 41.667 0.00 0.00 0.00 3.27
410 411 5.480642 ACCATCCTATGAGCTAACATCTG 57.519 43.478 0.00 0.00 0.00 2.90
411 412 5.843421 AGAACCATCCTATGAGCTAACATCT 59.157 40.000 0.00 0.00 0.00 2.90
412 413 6.107901 AGAACCATCCTATGAGCTAACATC 57.892 41.667 0.00 0.00 0.00 3.06
413 414 6.506538 AAGAACCATCCTATGAGCTAACAT 57.493 37.500 0.00 0.00 0.00 2.71
414 415 5.957771 AAGAACCATCCTATGAGCTAACA 57.042 39.130 0.00 0.00 0.00 2.41
415 416 6.817184 TGTAAGAACCATCCTATGAGCTAAC 58.183 40.000 0.00 0.00 0.00 2.34
416 417 7.071196 ACATGTAAGAACCATCCTATGAGCTAA 59.929 37.037 0.00 0.00 0.00 3.09
417 418 6.554982 ACATGTAAGAACCATCCTATGAGCTA 59.445 38.462 0.00 0.00 0.00 3.32
418 419 5.367937 ACATGTAAGAACCATCCTATGAGCT 59.632 40.000 0.00 0.00 0.00 4.09
419 420 5.615289 ACATGTAAGAACCATCCTATGAGC 58.385 41.667 0.00 0.00 0.00 4.26
420 421 8.183104 TCTACATGTAAGAACCATCCTATGAG 57.817 38.462 7.06 0.00 0.00 2.90
421 422 7.255977 GCTCTACATGTAAGAACCATCCTATGA 60.256 40.741 7.06 0.00 0.00 2.15
422 423 6.870965 GCTCTACATGTAAGAACCATCCTATG 59.129 42.308 7.06 0.00 0.00 2.23
423 424 6.014156 GGCTCTACATGTAAGAACCATCCTAT 60.014 42.308 7.06 0.00 0.00 2.57
424 425 5.304614 GGCTCTACATGTAAGAACCATCCTA 59.695 44.000 7.06 0.00 0.00 2.94
425 426 4.101741 GGCTCTACATGTAAGAACCATCCT 59.898 45.833 7.06 0.00 0.00 3.24
426 427 4.381411 GGCTCTACATGTAAGAACCATCC 58.619 47.826 7.06 0.72 0.00 3.51
427 428 4.051922 CGGCTCTACATGTAAGAACCATC 58.948 47.826 17.47 4.14 0.00 3.51
428 429 3.741388 GCGGCTCTACATGTAAGAACCAT 60.741 47.826 17.47 0.00 0.00 3.55
429 430 2.418197 GCGGCTCTACATGTAAGAACCA 60.418 50.000 17.47 0.00 0.00 3.67
430 431 2.202566 GCGGCTCTACATGTAAGAACC 58.797 52.381 7.06 9.99 0.00 3.62
431 432 2.888594 TGCGGCTCTACATGTAAGAAC 58.111 47.619 7.06 2.74 0.00 3.01
432 433 3.819564 ATGCGGCTCTACATGTAAGAA 57.180 42.857 7.06 0.00 0.00 2.52
433 434 3.492656 GGAATGCGGCTCTACATGTAAGA 60.493 47.826 7.06 6.02 0.00 2.10
434 435 2.802816 GGAATGCGGCTCTACATGTAAG 59.197 50.000 7.06 8.52 0.00 2.34
435 436 2.434336 AGGAATGCGGCTCTACATGTAA 59.566 45.455 7.06 0.00 0.00 2.41
436 437 2.035961 GAGGAATGCGGCTCTACATGTA 59.964 50.000 5.25 5.25 0.00 2.29
437 438 0.833287 AGGAATGCGGCTCTACATGT 59.167 50.000 2.69 2.69 0.00 3.21
438 439 1.202568 TGAGGAATGCGGCTCTACATG 60.203 52.381 0.00 0.00 0.00 3.21
439 440 1.123077 TGAGGAATGCGGCTCTACAT 58.877 50.000 0.00 0.00 0.00 2.29
440 441 1.123077 ATGAGGAATGCGGCTCTACA 58.877 50.000 0.00 0.00 0.00 2.74
441 442 2.246719 AATGAGGAATGCGGCTCTAC 57.753 50.000 0.00 0.00 0.00 2.59
442 443 3.388024 ACTAAATGAGGAATGCGGCTCTA 59.612 43.478 0.00 0.00 0.00 2.43
443 444 2.171448 ACTAAATGAGGAATGCGGCTCT 59.829 45.455 0.00 0.00 0.00 4.09
444 445 2.565841 ACTAAATGAGGAATGCGGCTC 58.434 47.619 0.00 0.00 0.00 4.70
445 446 2.717639 ACTAAATGAGGAATGCGGCT 57.282 45.000 0.00 0.00 0.00 5.52
446 447 3.202906 TGTACTAAATGAGGAATGCGGC 58.797 45.455 0.00 0.00 0.00 6.53
447 448 5.050091 GTCATGTACTAAATGAGGAATGCGG 60.050 44.000 0.00 0.00 34.78 5.69
448 449 5.332581 CGTCATGTACTAAATGAGGAATGCG 60.333 44.000 8.06 0.00 40.64 4.73
449 450 5.753438 TCGTCATGTACTAAATGAGGAATGC 59.247 40.000 12.20 0.00 42.72 3.56
450 451 6.074088 GCTCGTCATGTACTAAATGAGGAATG 60.074 42.308 14.35 8.05 44.11 2.67
451 452 5.986135 GCTCGTCATGTACTAAATGAGGAAT 59.014 40.000 14.35 0.00 44.11 3.01
452 453 5.127194 AGCTCGTCATGTACTAAATGAGGAA 59.873 40.000 14.35 3.98 44.11 3.36
453 454 4.645136 AGCTCGTCATGTACTAAATGAGGA 59.355 41.667 13.33 13.33 43.17 3.71
454 455 4.742167 CAGCTCGTCATGTACTAAATGAGG 59.258 45.833 7.64 7.64 39.92 3.86
455 456 5.344066 ACAGCTCGTCATGTACTAAATGAG 58.656 41.667 0.00 1.10 34.78 2.90
456 457 5.324784 ACAGCTCGTCATGTACTAAATGA 57.675 39.130 0.00 0.00 0.00 2.57
457 458 5.627802 GACAGCTCGTCATGTACTAAATG 57.372 43.478 10.30 0.00 44.69 2.32
469 470 5.487153 TCTTGTAGAATAGACAGCTCGTC 57.513 43.478 7.88 7.88 45.77 4.20
470 471 5.734786 GCATCTTGTAGAATAGACAGCTCGT 60.735 44.000 0.00 0.00 0.00 4.18
471 472 4.679197 GCATCTTGTAGAATAGACAGCTCG 59.321 45.833 0.00 0.00 0.00 5.03
472 473 5.841810 AGCATCTTGTAGAATAGACAGCTC 58.158 41.667 0.00 0.00 32.75 4.09
473 474 5.362143 TGAGCATCTTGTAGAATAGACAGCT 59.638 40.000 0.00 0.00 37.63 4.24
474 475 5.595885 TGAGCATCTTGTAGAATAGACAGC 58.404 41.667 0.00 0.00 34.92 4.40
475 476 7.381948 GTCATGAGCATCTTGTAGAATAGACAG 59.618 40.741 0.00 0.00 40.75 3.51
476 477 7.147846 TGTCATGAGCATCTTGTAGAATAGACA 60.148 37.037 0.00 0.00 40.75 3.41
477 478 7.168972 GTGTCATGAGCATCTTGTAGAATAGAC 59.831 40.741 0.00 0.00 40.75 2.59
478 479 7.147846 TGTGTCATGAGCATCTTGTAGAATAGA 60.148 37.037 0.00 0.00 40.75 1.98
479 480 6.982724 TGTGTCATGAGCATCTTGTAGAATAG 59.017 38.462 0.00 0.00 40.75 1.73
480 481 6.877236 TGTGTCATGAGCATCTTGTAGAATA 58.123 36.000 0.00 0.00 40.75 1.75
481 482 5.737860 TGTGTCATGAGCATCTTGTAGAAT 58.262 37.500 0.00 0.00 40.75 2.40
482 483 5.151297 TGTGTCATGAGCATCTTGTAGAA 57.849 39.130 0.00 0.00 40.75 2.10
483 484 4.221482 ACTGTGTCATGAGCATCTTGTAGA 59.779 41.667 0.00 0.00 40.75 2.59
484 485 4.502016 ACTGTGTCATGAGCATCTTGTAG 58.498 43.478 0.00 0.00 40.75 2.74
485 486 4.541973 ACTGTGTCATGAGCATCTTGTA 57.458 40.909 0.00 0.00 40.75 2.41
486 487 3.413846 ACTGTGTCATGAGCATCTTGT 57.586 42.857 0.00 0.00 40.75 3.16
487 488 4.761235 AAACTGTGTCATGAGCATCTTG 57.239 40.909 0.00 0.00 41.23 3.02
488 489 5.068636 AGAAAACTGTGTCATGAGCATCTT 58.931 37.500 0.00 0.00 34.92 2.40
489 490 4.649692 AGAAAACTGTGTCATGAGCATCT 58.350 39.130 0.00 0.00 34.92 2.90
490 491 5.368256 AAGAAAACTGTGTCATGAGCATC 57.632 39.130 0.00 0.00 0.00 3.91
491 492 7.310664 CAATAAGAAAACTGTGTCATGAGCAT 58.689 34.615 0.00 0.00 0.00 3.79
492 493 6.294120 CCAATAAGAAAACTGTGTCATGAGCA 60.294 38.462 0.00 0.00 0.00 4.26
493 494 6.072508 TCCAATAAGAAAACTGTGTCATGAGC 60.073 38.462 0.00 0.00 0.00 4.26
494 495 7.439157 TCCAATAAGAAAACTGTGTCATGAG 57.561 36.000 0.00 0.00 0.00 2.90
495 496 7.665145 TGATCCAATAAGAAAACTGTGTCATGA 59.335 33.333 0.00 0.00 0.00 3.07
496 497 7.819644 TGATCCAATAAGAAAACTGTGTCATG 58.180 34.615 0.00 0.00 0.00 3.07
497 498 8.464404 CATGATCCAATAAGAAAACTGTGTCAT 58.536 33.333 0.00 0.00 0.00 3.06
498 499 7.448161 ACATGATCCAATAAGAAAACTGTGTCA 59.552 33.333 0.00 0.00 0.00 3.58
499 500 7.820648 ACATGATCCAATAAGAAAACTGTGTC 58.179 34.615 0.00 0.00 0.00 3.67
500 501 7.667219 AGACATGATCCAATAAGAAAACTGTGT 59.333 33.333 0.00 0.00 0.00 3.72
501 502 8.048534 AGACATGATCCAATAAGAAAACTGTG 57.951 34.615 0.00 0.00 0.00 3.66
502 503 8.517878 CAAGACATGATCCAATAAGAAAACTGT 58.482 33.333 0.00 0.00 0.00 3.55
503 504 7.972277 CCAAGACATGATCCAATAAGAAAACTG 59.028 37.037 0.00 0.00 0.00 3.16
504 505 7.363268 GCCAAGACATGATCCAATAAGAAAACT 60.363 37.037 0.00 0.00 0.00 2.66
505 506 6.753744 GCCAAGACATGATCCAATAAGAAAAC 59.246 38.462 0.00 0.00 0.00 2.43
506 507 6.664816 AGCCAAGACATGATCCAATAAGAAAA 59.335 34.615 0.00 0.00 0.00 2.29
507 508 6.189859 AGCCAAGACATGATCCAATAAGAAA 58.810 36.000 0.00 0.00 0.00 2.52
508 509 5.759059 AGCCAAGACATGATCCAATAAGAA 58.241 37.500 0.00 0.00 0.00 2.52
509 510 5.378230 AGCCAAGACATGATCCAATAAGA 57.622 39.130 0.00 0.00 0.00 2.10
510 511 7.284034 ACTTTAGCCAAGACATGATCCAATAAG 59.716 37.037 0.00 0.00 36.21 1.73
511 512 7.067372 CACTTTAGCCAAGACATGATCCAATAA 59.933 37.037 0.00 0.00 36.21 1.40
523 524 3.003378 GTGTTGGTCACTTTAGCCAAGAC 59.997 47.826 6.99 6.99 44.98 3.01
607 609 3.624861 ACTGATCAAATTAGAGCAAGCCG 59.375 43.478 0.00 0.00 32.97 5.52
843 845 3.054875 TGACAGTGATGCTCCAGCTATTT 60.055 43.478 0.00 0.00 42.66 1.40
1101 1112 1.656441 GTGCAGCCCACACTTTGAG 59.344 57.895 0.00 0.00 44.06 3.02
1274 1285 7.537649 GCTTAAGAAAAATAGAAAAGTCCACCG 59.462 37.037 6.67 0.00 0.00 4.94
1327 1338 7.182361 ACAGAGAACAATTATATGTGCATCG 57.818 36.000 0.00 0.00 30.65 3.84
1328 1339 9.793252 AAAACAGAGAACAATTATATGTGCATC 57.207 29.630 0.00 0.00 30.65 3.91
1329 1340 9.793252 GAAAACAGAGAACAATTATATGTGCAT 57.207 29.630 0.00 0.00 30.65 3.96
1354 1365 5.362430 ACAAGTTTAAGTTTCAGGCATTGGA 59.638 36.000 0.00 0.00 0.00 3.53
1372 1383 5.972107 ATTAGCAATCTCAAGCACAAGTT 57.028 34.783 0.00 0.00 0.00 2.66
1399 1413 7.123247 ACGGCCTAACTCTAGAAGTACAAATAA 59.877 37.037 0.00 0.00 37.17 1.40
1447 1465 1.340114 GCTGTTCGGGGAAAGGAGATT 60.340 52.381 0.00 0.00 0.00 2.40
1448 1466 0.253327 GCTGTTCGGGGAAAGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
1458 1476 1.656652 CTCAACATAGGCTGTTCGGG 58.343 55.000 0.00 0.00 44.99 5.14
2217 2247 4.705110 TGGTACACTAATATGGCAGCAT 57.295 40.909 0.00 0.00 0.00 3.79
2346 2377 6.398095 CCCTGAACCATAGAACAATTTTTCC 58.602 40.000 0.68 0.00 0.00 3.13
2361 2392 5.365314 ACAATTTCTTTTAAGCCCTGAACCA 59.635 36.000 0.00 0.00 0.00 3.67
2531 2564 9.146984 CTTGATCGTACAAAACCATACTAAAGA 57.853 33.333 0.00 0.00 0.00 2.52
2589 2623 8.280258 TGACCCATATTCCTCTATCAAATTCT 57.720 34.615 0.00 0.00 0.00 2.40
2590 2624 8.954350 CATGACCCATATTCCTCTATCAAATTC 58.046 37.037 0.00 0.00 0.00 2.17
2592 2626 7.018952 ACCATGACCCATATTCCTCTATCAAAT 59.981 37.037 0.00 0.00 0.00 2.32
2595 2629 5.249163 CACCATGACCCATATTCCTCTATCA 59.751 44.000 0.00 0.00 0.00 2.15
2596 2630 5.738909 CACCATGACCCATATTCCTCTATC 58.261 45.833 0.00 0.00 0.00 2.08
2597 2631 4.018960 GCACCATGACCCATATTCCTCTAT 60.019 45.833 0.00 0.00 0.00 1.98
2598 2632 3.327757 GCACCATGACCCATATTCCTCTA 59.672 47.826 0.00 0.00 0.00 2.43
3566 3866 1.336148 ACGCCATTGCACATGTTTCTG 60.336 47.619 0.00 0.00 37.32 3.02
3591 3891 7.939039 ACATCATATCCATTCATCCGTAAAAGT 59.061 33.333 0.00 0.00 0.00 2.66
3693 3997 9.820229 TCTGTACAAGATTAATTTTTAACTGCG 57.180 29.630 0.00 0.00 0.00 5.18
3730 4034 3.515602 AGTGGAGGCTTGAGAAACATT 57.484 42.857 0.00 0.00 0.00 2.71
4567 4906 5.473504 TGCTATGAGGTTTTCTTGTTCTTCC 59.526 40.000 0.00 0.00 0.00 3.46
4616 4955 8.831550 AGAAAGTGTAGACAAAGAAATCAAGTC 58.168 33.333 0.00 0.00 0.00 3.01
5675 6059 8.563732 GCTGACTCAAGGAATCCTTAATTATTC 58.436 37.037 15.04 6.31 42.67 1.75
5682 6066 3.368427 CGTGCTGACTCAAGGAATCCTTA 60.368 47.826 15.04 2.92 42.67 2.69
5728 6112 8.822855 GTTAAAAGTACATTTTTGAAAGGTGGG 58.177 33.333 0.83 0.00 41.40 4.61
5731 6115 9.078753 CACGTTAAAAGTACATTTTTGAAAGGT 57.921 29.630 0.83 0.00 41.40 3.50
5919 6326 8.382875 CAGAAAGTTTCATGGAAAAACAACTTC 58.617 33.333 17.65 9.17 38.73 3.01
5962 6370 4.521062 GAGGGCGCGCACATCTCT 62.521 66.667 37.52 15.34 0.00 3.10
6006 6414 9.454859 ACCCACTTTGAAAAACATATTTTGAAA 57.545 25.926 0.00 0.00 38.07 2.69
6009 6417 8.887717 TGAACCCACTTTGAAAAACATATTTTG 58.112 29.630 0.00 0.00 38.07 2.44
6015 6423 7.734942 ACATATGAACCCACTTTGAAAAACAT 58.265 30.769 10.38 0.00 0.00 2.71
6046 6454 2.681848 CTGAGAAGTGCATGGATGAACC 59.318 50.000 0.00 0.00 37.01 3.62
6118 6526 2.686405 TCGCATTTACTCTCCTCGCTTA 59.314 45.455 0.00 0.00 0.00 3.09
6173 6581 5.227569 TGCATATCAATCAGATACCGGTT 57.772 39.130 15.04 0.00 41.81 4.44
6312 6720 7.908230 ACAATGCACAATAAAGTTTTTGACAG 58.092 30.769 13.79 7.30 0.00 3.51
6372 6780 9.985730 TGAGAAATTTGTAGCTTTGATTGATTT 57.014 25.926 0.00 0.00 0.00 2.17
6381 6789 7.807977 TGAAGACTGAGAAATTTGTAGCTTT 57.192 32.000 0.00 0.00 0.00 3.51
6447 6857 5.827797 AGAAATTTGTAGCTGTTTCAGTGGA 59.172 36.000 0.00 0.00 34.02 4.02
6550 6972 3.007074 AGGTTTTTGGTGTTCGGTTGTTT 59.993 39.130 0.00 0.00 0.00 2.83
6552 6974 2.172679 AGGTTTTTGGTGTTCGGTTGT 58.827 42.857 0.00 0.00 0.00 3.32
6570 6992 5.116882 GCCTCAACCAAATACTGTAGTAGG 58.883 45.833 0.00 0.00 33.52 3.18
6572 6994 4.751060 CGCCTCAACCAAATACTGTAGTA 58.249 43.478 0.00 0.00 34.67 1.82
6573 6995 3.596214 CGCCTCAACCAAATACTGTAGT 58.404 45.455 0.00 0.00 0.00 2.73
6577 7003 1.453155 AGCGCCTCAACCAAATACTG 58.547 50.000 2.29 0.00 0.00 2.74
6600 7026 4.681942 CAGTGCAGTGACTTAGTTGAGTAC 59.318 45.833 16.94 0.00 0.00 2.73
6605 7031 2.472861 CGACAGTGCAGTGACTTAGTTG 59.527 50.000 28.02 4.54 0.00 3.16
6606 7032 2.361119 TCGACAGTGCAGTGACTTAGTT 59.639 45.455 28.02 3.19 0.00 2.24
6609 7035 3.005367 TCAATCGACAGTGCAGTGACTTA 59.995 43.478 28.02 12.59 0.00 2.24
6610 7036 2.138320 CAATCGACAGTGCAGTGACTT 58.862 47.619 28.02 10.24 0.00 3.01
6621 7047 4.028852 TCCGTAGTGATTCAATCGACAG 57.971 45.455 0.00 0.00 0.00 3.51
6628 7054 2.236146 ACCATGCTCCGTAGTGATTCAA 59.764 45.455 0.00 0.00 0.00 2.69
6629 7055 1.831106 ACCATGCTCCGTAGTGATTCA 59.169 47.619 0.00 0.00 0.00 2.57
6653 7079 3.411517 CTGGTCGGCCCAAGGGAT 61.412 66.667 9.92 0.00 44.65 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.