Multiple sequence alignment - TraesCS2A01G026600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G026600 chr2A 100.000 3224 0 0 1 3224 12286728 12289951 0.000000e+00 5954.0
1 TraesCS2A01G026600 chr2A 88.698 929 81 13 1490 2413 12299210 12300119 0.000000e+00 1112.0
2 TraesCS2A01G026600 chr2A 81.111 270 50 1 2902 3171 12022776 12023044 7.010000e-52 215.0
3 TraesCS2A01G026600 chr2A 84.138 145 20 3 174 316 216837726 216837869 1.560000e-28 137.0
4 TraesCS2A01G026600 chr2A 92.857 56 3 1 2450 2505 12300110 12300164 2.670000e-11 80.5
5 TraesCS2A01G026600 chr2B 91.498 1882 136 10 635 2504 18178931 18177062 0.000000e+00 2567.0
6 TraesCS2A01G026600 chr2B 89.193 768 72 8 1490 2254 18174170 18173411 0.000000e+00 948.0
7 TraesCS2A01G026600 chr2B 97.669 429 8 1 2796 3224 18176989 18176563 0.000000e+00 736.0
8 TraesCS2A01G026600 chr2B 90.878 296 27 0 1956 2251 18174712 18174417 6.480000e-107 398.0
9 TraesCS2A01G026600 chr2B 81.404 527 40 15 1 476 18180830 18180311 8.440000e-101 377.0
10 TraesCS2A01G026600 chr2B 84.437 302 45 2 2902 3203 17897763 17898062 2.430000e-76 296.0
11 TraesCS2A01G026600 chr2B 88.073 109 3 4 507 605 18180233 18180125 1.570000e-23 121.0
12 TraesCS2A01G026600 chr2D 92.340 1684 87 23 587 2252 11774281 11775940 0.000000e+00 2357.0
13 TraesCS2A01G026600 chr2D 97.306 297 7 1 2503 2798 116308506 116308210 1.340000e-138 503.0
14 TraesCS2A01G026600 chr2D 97.297 296 8 0 2503 2798 143750337 143750042 1.340000e-138 503.0
15 TraesCS2A01G026600 chr2D 97.297 296 7 1 2503 2798 507195976 507196270 4.800000e-138 501.0
16 TraesCS2A01G026600 chr2D 83.861 316 47 4 2893 3207 11521029 11521341 6.760000e-77 298.0
17 TraesCS2A01G026600 chr2D 84.247 146 19 4 174 316 198728546 198728690 4.340000e-29 139.0
18 TraesCS2A01G026600 chr2D 84.354 147 16 6 174 316 533780115 533780258 1.560000e-28 137.0
19 TraesCS2A01G026600 chr2D 83.553 152 16 6 174 321 209024515 209024661 2.020000e-27 134.0
20 TraesCS2A01G026600 chr1B 97.980 297 5 1 2503 2798 145279483 145279187 6.170000e-142 514.0
21 TraesCS2A01G026600 chr1B 83.297 461 65 9 1080 1534 8915937 8915483 6.440000e-112 414.0
22 TraesCS2A01G026600 chr1B 79.487 585 112 4 1638 2215 9260816 9260233 2.990000e-110 409.0
23 TraesCS2A01G026600 chr4D 97.635 296 7 0 2503 2798 170340834 170341129 2.870000e-140 508.0
24 TraesCS2A01G026600 chr4D 85.315 143 17 3 177 316 336131405 336131546 9.320000e-31 145.0
25 TraesCS2A01G026600 chr4D 83.673 147 17 6 174 316 466669428 466669285 7.260000e-27 132.0
26 TraesCS2A01G026600 chr5D 97.635 296 6 1 2503 2798 447952708 447952414 1.030000e-139 507.0
27 TraesCS2A01G026600 chr5D 84.138 145 20 2 174 316 386689273 386689130 1.560000e-28 137.0
28 TraesCS2A01G026600 chr5D 82.895 152 19 4 174 322 336413403 336413550 2.610000e-26 130.0
29 TraesCS2A01G026600 chr3D 97.288 295 8 0 2503 2797 386221378 386221084 4.800000e-138 501.0
30 TraesCS2A01G026600 chr6D 97.279 294 8 0 2503 2796 13098562 13098855 1.730000e-137 499.0
31 TraesCS2A01G026600 chr1D 96.667 300 10 0 2503 2802 493486410 493486111 1.730000e-137 499.0
32 TraesCS2A01G026600 chr1D 80.895 581 109 2 1638 2217 6732259 6731680 1.050000e-124 457.0
33 TraesCS2A01G026600 chr1D 83.913 460 60 11 1080 1532 6789703 6790155 8.270000e-116 427.0
34 TraesCS2A01G026600 chr1D 79.316 585 113 6 1638 2215 6787076 6786493 1.390000e-108 403.0
35 TraesCS2A01G026600 chr1D 82.430 461 69 9 1080 1534 6817708 6818162 3.020000e-105 392.0
36 TraesCS2A01G026600 chr1A 83.913 460 64 7 1080 1534 8295780 8296234 6.390000e-117 431.0
37 TraesCS2A01G026600 chr1A 79.623 584 111 5 1639 2215 8292097 8291515 2.310000e-111 412.0
38 TraesCS2A01G026600 chr4B 81.445 512 86 5 1023 1531 36763403 36762898 8.320000e-111 411.0
39 TraesCS2A01G026600 chr4B 81.250 512 87 5 1023 1531 36664486 36663981 3.870000e-109 405.0
40 TraesCS2A01G026600 chr4B 81.250 512 87 5 1023 1531 36714432 36713927 3.870000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G026600 chr2A 12286728 12289951 3223 False 5954.000000 5954 100.000000 1 3224 1 chr2A.!!$F2 3223
1 TraesCS2A01G026600 chr2A 12299210 12300164 954 False 596.250000 1112 90.777500 1490 2505 2 chr2A.!!$F4 1015
2 TraesCS2A01G026600 chr2B 18173411 18180830 7419 True 857.833333 2567 89.785833 1 3224 6 chr2B.!!$R1 3223
3 TraesCS2A01G026600 chr2D 11774281 11775940 1659 False 2357.000000 2357 92.340000 587 2252 1 chr2D.!!$F2 1665
4 TraesCS2A01G026600 chr1B 9260233 9260816 583 True 409.000000 409 79.487000 1638 2215 1 chr1B.!!$R2 577
5 TraesCS2A01G026600 chr1D 6731680 6732259 579 True 457.000000 457 80.895000 1638 2217 1 chr1D.!!$R1 579
6 TraesCS2A01G026600 chr1D 6786493 6787076 583 True 403.000000 403 79.316000 1638 2215 1 chr1D.!!$R2 577
7 TraesCS2A01G026600 chr1A 8291515 8292097 582 True 412.000000 412 79.623000 1639 2215 1 chr1A.!!$R1 576
8 TraesCS2A01G026600 chr4B 36762898 36763403 505 True 411.000000 411 81.445000 1023 1531 1 chr4B.!!$R3 508
9 TraesCS2A01G026600 chr4B 36663981 36664486 505 True 405.000000 405 81.250000 1023 1531 1 chr4B.!!$R1 508
10 TraesCS2A01G026600 chr4B 36713927 36714432 505 True 405.000000 405 81.250000 1023 1531 1 chr4B.!!$R2 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 77 0.033504 GGTTGGACGAAGCACTCTGA 59.966 55.0 0.0 0.0 31.92 3.27 F
515 645 0.179043 TGTGGGCGTGCTCAGTTAAA 60.179 50.0 0.0 0.0 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 2874 0.321387 TGCAAAGCAGAGGAGAGCAG 60.321 55.0 0.00 0.0 33.32 4.24 R
2508 3849 0.250989 TCCCGCGTTTTGGAAATCCT 60.251 50.0 4.92 0.0 36.82 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 5.414765 ACAATAAGACGGGTTTCAAGGAATC 59.585 40.000 0.00 0.00 0.00 2.52
38 40 1.818674 ACGGGTTTCAAGGAATCATGC 59.181 47.619 0.00 0.00 0.00 4.06
74 77 0.033504 GGTTGGACGAAGCACTCTGA 59.966 55.000 0.00 0.00 31.92 3.27
75 78 1.140816 GTTGGACGAAGCACTCTGAC 58.859 55.000 0.00 0.00 0.00 3.51
76 79 1.040646 TTGGACGAAGCACTCTGACT 58.959 50.000 0.00 0.00 0.00 3.41
77 80 0.315251 TGGACGAAGCACTCTGACTG 59.685 55.000 0.00 0.00 0.00 3.51
86 89 1.517242 CACTCTGACTGGCAGGAAAC 58.483 55.000 20.34 7.78 44.98 2.78
162 173 7.633193 TCTGTCTTAAGCCAAACTTTGTAAA 57.367 32.000 0.00 0.00 39.97 2.01
178 198 7.593825 ACTTTGTAAAGTTTGATAGATGTGGC 58.406 34.615 4.25 0.00 46.52 5.01
191 211 2.884012 AGATGTGGCTAGATCTCAGTCG 59.116 50.000 3.68 0.00 31.80 4.18
245 269 9.810545 GTGATAGTATATAAGATGGAGAAAGGC 57.189 37.037 0.00 0.00 0.00 4.35
257 281 5.304686 TGGAGAAAGGCAAACTAGAAAGA 57.695 39.130 0.00 0.00 0.00 2.52
258 282 5.880901 TGGAGAAAGGCAAACTAGAAAGAT 58.119 37.500 0.00 0.00 0.00 2.40
259 283 6.306987 TGGAGAAAGGCAAACTAGAAAGATT 58.693 36.000 0.00 0.00 0.00 2.40
260 284 6.777580 TGGAGAAAGGCAAACTAGAAAGATTT 59.222 34.615 0.00 0.00 0.00 2.17
313 337 5.073428 AGGAATATAGCATCGACTGAGACA 58.927 41.667 0.00 0.00 0.00 3.41
430 480 6.979817 TGCTATTGATTTACCATTGTGAATGC 59.020 34.615 0.00 0.00 37.57 3.56
434 484 6.778834 TGATTTACCATTGTGAATGCTGAT 57.221 33.333 0.00 0.00 37.57 2.90
440 570 9.585099 TTTACCATTGTGAATGCTGATATTTTC 57.415 29.630 0.00 0.00 37.57 2.29
485 615 9.838339 TGGAAAAGATTAAACTTTTTATGCCAA 57.162 25.926 20.39 8.60 45.91 4.52
490 620 8.687824 AGATTAAACTTTTTATGCCAACATCG 57.312 30.769 0.00 0.00 37.74 3.84
491 621 8.519526 AGATTAAACTTTTTATGCCAACATCGA 58.480 29.630 0.00 0.00 37.74 3.59
492 622 9.301153 GATTAAACTTTTTATGCCAACATCGAT 57.699 29.630 0.00 0.00 37.74 3.59
493 623 9.651913 ATTAAACTTTTTATGCCAACATCGATT 57.348 25.926 0.00 0.00 37.74 3.34
494 624 7.961325 AAACTTTTTATGCCAACATCGATTT 57.039 28.000 0.00 0.00 37.74 2.17
495 625 7.961325 AACTTTTTATGCCAACATCGATTTT 57.039 28.000 0.00 0.00 37.74 1.82
496 626 7.961325 ACTTTTTATGCCAACATCGATTTTT 57.039 28.000 0.00 0.00 37.74 1.94
497 627 7.795859 ACTTTTTATGCCAACATCGATTTTTG 58.204 30.769 0.00 2.16 37.74 2.44
498 628 7.440856 ACTTTTTATGCCAACATCGATTTTTGT 59.559 29.630 13.13 0.31 37.74 2.83
499 629 6.702972 TTTATGCCAACATCGATTTTTGTG 57.297 33.333 13.13 7.67 37.74 3.33
500 630 3.023946 TGCCAACATCGATTTTTGTGG 57.976 42.857 13.13 9.42 0.00 4.17
501 631 2.288702 TGCCAACATCGATTTTTGTGGG 60.289 45.455 6.01 6.01 39.55 4.61
502 632 2.336667 CCAACATCGATTTTTGTGGGC 58.663 47.619 13.13 0.00 30.38 5.36
503 633 1.984990 CAACATCGATTTTTGTGGGCG 59.015 47.619 0.00 0.00 0.00 6.13
504 634 1.243902 ACATCGATTTTTGTGGGCGT 58.756 45.000 0.00 0.00 0.00 5.68
505 635 1.068610 ACATCGATTTTTGTGGGCGTG 60.069 47.619 0.00 0.00 0.00 5.34
515 645 0.179043 TGTGGGCGTGCTCAGTTAAA 60.179 50.000 0.00 0.00 0.00 1.52
523 653 3.724257 GCGTGCTCAGTTAAACAGAAAAC 59.276 43.478 0.00 0.00 0.00 2.43
531 661 8.708742 GCTCAGTTAAACAGAAAACAACTTTTT 58.291 29.630 0.00 0.00 29.21 1.94
554 694 0.611062 AGCGTGTAGGCCTAGTGTCA 60.611 55.000 14.38 4.49 0.00 3.58
609 749 2.036958 TTATGCCAACATCGACAGGG 57.963 50.000 0.00 0.00 37.74 4.45
631 1935 2.048222 ATGCGTGACGGTGACCTG 60.048 61.111 7.25 0.00 0.00 4.00
705 2009 3.133362 AGCTGCATAATTTTGACCCATGG 59.867 43.478 4.14 4.14 0.00 3.66
706 2010 3.118665 GCTGCATAATTTTGACCCATGGT 60.119 43.478 11.73 0.00 39.44 3.55
718 2030 2.357836 CATGGTCCCAGCAGCCTT 59.642 61.111 0.00 0.00 0.00 4.35
740 2052 2.746362 CACCTTTCTTGACCAGATGAGC 59.254 50.000 0.00 0.00 0.00 4.26
786 2098 1.613630 TGCCACTCTCTTCTCCCCC 60.614 63.158 0.00 0.00 0.00 5.40
788 2100 0.912006 GCCACTCTCTTCTCCCCCTT 60.912 60.000 0.00 0.00 0.00 3.95
792 2104 0.341609 CTCTCTTCTCCCCCTTCCCT 59.658 60.000 0.00 0.00 0.00 4.20
808 2120 1.303948 CCTGGCCACATGATCCACA 59.696 57.895 0.00 0.00 0.00 4.17
809 2121 0.750546 CCTGGCCACATGATCCACAG 60.751 60.000 0.00 1.04 0.00 3.66
823 2135 2.972348 TCCACAGTCCTCACCTTACTT 58.028 47.619 0.00 0.00 0.00 2.24
827 2139 5.546499 TCCACAGTCCTCACCTTACTTAAAT 59.454 40.000 0.00 0.00 0.00 1.40
828 2140 5.643777 CCACAGTCCTCACCTTACTTAAATG 59.356 44.000 0.00 0.00 0.00 2.32
829 2141 5.643777 CACAGTCCTCACCTTACTTAAATGG 59.356 44.000 0.00 0.00 0.00 3.16
965 2279 1.141881 CCTTCATCGACCACCTCCG 59.858 63.158 0.00 0.00 0.00 4.63
987 2309 4.032672 CGTTGATCAAAGATCAGAGCTCAC 59.967 45.833 17.77 4.37 0.00 3.51
1012 2334 2.437180 CAGCAATGGAGCCGCAGA 60.437 61.111 0.00 0.00 34.23 4.26
1017 2339 2.735772 AATGGAGCCGCAGACCGAT 61.736 57.895 0.00 0.00 40.02 4.18
1020 2342 2.956964 GAGCCGCAGACCGATTCG 60.957 66.667 0.00 0.00 40.02 3.34
1029 2351 0.541863 AGACCGATTCGAAGCCCATT 59.458 50.000 8.00 0.00 0.00 3.16
1065 2387 1.523258 CAAGATGGGCTCCTCGCTG 60.523 63.158 0.00 0.00 39.13 5.18
1480 2802 2.143419 GCGGAGGAGATCCCCATGT 61.143 63.158 0.00 0.00 46.50 3.21
1551 2873 8.233190 GGTACGTACATGAGAACATATAGTACC 58.767 40.741 26.02 7.61 40.47 3.34
1552 2874 7.211966 ACGTACATGAGAACATATAGTACCC 57.788 40.000 0.00 0.00 33.62 3.69
1588 2910 5.332808 GCTTTGCATTTTACACTCTGCTTTG 60.333 40.000 0.00 0.00 35.66 2.77
1589 2911 4.241590 TGCATTTTACACTCTGCTTTGG 57.758 40.909 0.00 0.00 35.66 3.28
1590 2912 3.888323 TGCATTTTACACTCTGCTTTGGA 59.112 39.130 0.00 0.00 35.66 3.53
1591 2913 4.523943 TGCATTTTACACTCTGCTTTGGAT 59.476 37.500 0.00 0.00 35.66 3.41
1593 2915 5.928264 GCATTTTACACTCTGCTTTGGATTT 59.072 36.000 0.00 0.00 0.00 2.17
1595 2917 6.707440 TTTTACACTCTGCTTTGGATTTCA 57.293 33.333 0.00 0.00 0.00 2.69
1596 2918 6.707440 TTTACACTCTGCTTTGGATTTCAA 57.293 33.333 0.00 0.00 0.00 2.69
1597 2919 4.574599 ACACTCTGCTTTGGATTTCAAC 57.425 40.909 0.00 0.00 34.67 3.18
1600 2922 4.037208 CACTCTGCTTTGGATTTCAACACT 59.963 41.667 0.00 0.00 34.67 3.55
1601 2923 4.276926 ACTCTGCTTTGGATTTCAACACTC 59.723 41.667 0.00 0.00 34.67 3.51
1602 2924 4.464008 TCTGCTTTGGATTTCAACACTCT 58.536 39.130 0.00 0.00 34.67 3.24
1603 2925 4.276678 TCTGCTTTGGATTTCAACACTCTG 59.723 41.667 0.00 0.00 34.67 3.35
1839 3174 1.967066 CTCTCGCCCTTCATGGACTAT 59.033 52.381 0.00 0.00 38.35 2.12
1923 3264 2.774234 CCACAACATCCTCTACCTCCAT 59.226 50.000 0.00 0.00 0.00 3.41
1938 3279 0.541998 TCCATATGATCGAGCCCCGT 60.542 55.000 3.65 0.00 39.75 5.28
2051 3392 3.083997 CCGGGAAGAGGGGGACAG 61.084 72.222 0.00 0.00 0.00 3.51
2125 3466 1.886542 CAAACCCAGACCTACCAAAGC 59.113 52.381 0.00 0.00 0.00 3.51
2227 3568 4.529377 ACTACCCGTTTCTTCCTTGATGTA 59.471 41.667 0.00 0.00 0.00 2.29
2233 3574 6.238484 CCCGTTTCTTCCTTGATGTATCATTC 60.238 42.308 0.00 0.00 36.56 2.67
2299 3640 9.685276 ATTCAAATGGAACCTTTTCTTTTTCTT 57.315 25.926 2.43 0.00 38.60 2.52
2369 3710 6.433093 ACAATTTTTCCGGCTGTATAGAAGTT 59.567 34.615 0.00 0.00 0.00 2.66
2442 3783 7.488322 TGAAAGATCAAGTTTCAAAATTCCGT 58.512 30.769 6.23 0.00 40.20 4.69
2457 3798 8.198109 TCAAAATTCCGTATTCCAAAAGTTTGA 58.802 29.630 5.34 5.29 39.86 2.69
2495 3836 0.252239 GGAAAATCCCAAGGCCTGGT 60.252 55.000 5.69 0.00 44.76 4.00
2505 3846 5.887754 TCCCAAGGCCTGGTATTTATATTC 58.112 41.667 5.69 0.00 44.76 1.75
2506 3847 4.700213 CCCAAGGCCTGGTATTTATATTCG 59.300 45.833 5.69 0.00 44.76 3.34
2508 3849 6.469410 CCAAGGCCTGGTATTTATATTCGTA 58.531 40.000 5.69 0.00 40.78 3.43
2510 3851 6.295719 AGGCCTGGTATTTATATTCGTAGG 57.704 41.667 3.11 0.00 0.00 3.18
2511 3852 6.021030 AGGCCTGGTATTTATATTCGTAGGA 58.979 40.000 3.11 0.00 0.00 2.94
2515 3856 8.880750 GCCTGGTATTTATATTCGTAGGATTTC 58.119 37.037 0.00 0.00 0.00 2.17
2523 3864 3.817148 TTCGTAGGATTTCCAAAACGC 57.183 42.857 11.86 0.00 38.18 4.84
2524 3865 1.727880 TCGTAGGATTTCCAAAACGCG 59.272 47.619 3.53 3.53 38.18 6.01
2525 3866 1.201987 CGTAGGATTTCCAAAACGCGG 60.202 52.381 12.47 0.00 38.89 6.46
2526 3867 1.131693 GTAGGATTTCCAAAACGCGGG 59.868 52.381 12.47 0.89 38.89 6.13
2528 3869 0.599060 GGATTTCCAAAACGCGGGAA 59.401 50.000 12.47 11.04 41.27 3.97
2529 3870 1.203758 GGATTTCCAAAACGCGGGAAT 59.796 47.619 12.47 0.00 42.44 3.01
2530 3871 2.424246 GGATTTCCAAAACGCGGGAATA 59.576 45.455 12.47 5.29 42.44 1.75
2532 3873 1.455248 TTCCAAAACGCGGGAATAGG 58.545 50.000 12.47 4.53 38.23 2.57
2533 3874 0.614294 TCCAAAACGCGGGAATAGGA 59.386 50.000 12.47 7.14 0.00 2.94
2534 3875 1.003349 TCCAAAACGCGGGAATAGGAA 59.997 47.619 12.47 0.00 0.00 3.36
2535 3876 1.813786 CCAAAACGCGGGAATAGGAAA 59.186 47.619 12.47 0.00 0.00 3.13
2536 3877 2.229302 CCAAAACGCGGGAATAGGAAAA 59.771 45.455 12.47 0.00 0.00 2.29
2537 3878 3.305471 CCAAAACGCGGGAATAGGAAAAA 60.305 43.478 12.47 0.00 0.00 1.94
2538 3879 3.564235 AAACGCGGGAATAGGAAAAAC 57.436 42.857 12.47 0.00 0.00 2.43
2539 3880 2.188062 ACGCGGGAATAGGAAAAACA 57.812 45.000 12.47 0.00 0.00 2.83
2540 3881 2.718563 ACGCGGGAATAGGAAAAACAT 58.281 42.857 12.47 0.00 0.00 2.71
2542 3883 2.223479 CGCGGGAATAGGAAAAACATGG 60.223 50.000 0.00 0.00 0.00 3.66
2543 3884 2.100749 GCGGGAATAGGAAAAACATGGG 59.899 50.000 0.00 0.00 0.00 4.00
2544 3885 3.626930 CGGGAATAGGAAAAACATGGGA 58.373 45.455 0.00 0.00 0.00 4.37
2545 3886 4.215109 CGGGAATAGGAAAAACATGGGAT 58.785 43.478 0.00 0.00 0.00 3.85
2548 3889 6.016276 CGGGAATAGGAAAAACATGGGATTAG 60.016 42.308 0.00 0.00 0.00 1.73
2549 3890 7.066781 GGGAATAGGAAAAACATGGGATTAGA 58.933 38.462 0.00 0.00 0.00 2.10
2550 3891 7.231519 GGGAATAGGAAAAACATGGGATTAGAG 59.768 40.741 0.00 0.00 0.00 2.43
2551 3892 7.780271 GGAATAGGAAAAACATGGGATTAGAGT 59.220 37.037 0.00 0.00 0.00 3.24
2552 3893 8.525290 AATAGGAAAAACATGGGATTAGAGTG 57.475 34.615 0.00 0.00 0.00 3.51
2553 3894 5.264395 AGGAAAAACATGGGATTAGAGTGG 58.736 41.667 0.00 0.00 0.00 4.00
2555 3896 5.714806 GGAAAAACATGGGATTAGAGTGGAA 59.285 40.000 0.00 0.00 0.00 3.53
2556 3897 6.381133 GGAAAAACATGGGATTAGAGTGGAAT 59.619 38.462 0.00 0.00 0.00 3.01
2557 3898 6.780457 AAAACATGGGATTAGAGTGGAATG 57.220 37.500 0.00 0.00 0.00 2.67
2559 3900 5.041191 ACATGGGATTAGAGTGGAATGTC 57.959 43.478 0.00 0.00 0.00 3.06
2561 3902 3.104512 TGGGATTAGAGTGGAATGTCGT 58.895 45.455 0.00 0.00 0.00 4.34
2562 3903 3.132289 TGGGATTAGAGTGGAATGTCGTC 59.868 47.826 0.00 0.00 0.00 4.20
2563 3904 3.385111 GGGATTAGAGTGGAATGTCGTCT 59.615 47.826 0.00 0.00 0.00 4.18
2564 3905 4.141914 GGGATTAGAGTGGAATGTCGTCTT 60.142 45.833 0.00 0.00 0.00 3.01
2565 3906 4.806247 GGATTAGAGTGGAATGTCGTCTTG 59.194 45.833 0.00 0.00 0.00 3.02
2566 3907 5.394224 GGATTAGAGTGGAATGTCGTCTTGA 60.394 44.000 0.00 0.00 0.00 3.02
2569 3910 4.499183 AGAGTGGAATGTCGTCTTGAATC 58.501 43.478 0.00 0.00 0.00 2.52
2570 3911 3.600388 AGTGGAATGTCGTCTTGAATCC 58.400 45.455 0.00 0.00 0.00 3.01
2573 3914 4.567159 GTGGAATGTCGTCTTGAATCCTAC 59.433 45.833 0.00 0.00 30.94 3.18
2574 3915 4.221924 TGGAATGTCGTCTTGAATCCTACA 59.778 41.667 0.00 0.00 30.94 2.74
2575 3916 4.806247 GGAATGTCGTCTTGAATCCTACAG 59.194 45.833 0.00 0.00 0.00 2.74
2576 3917 3.868757 TGTCGTCTTGAATCCTACAGG 57.131 47.619 0.00 0.00 0.00 4.00
2589 3930 3.693807 TCCTACAGGATTGTACGAGTGT 58.306 45.455 0.00 0.00 39.78 3.55
2590 3931 4.084287 TCCTACAGGATTGTACGAGTGTT 58.916 43.478 0.00 0.00 39.78 3.32
2591 3932 4.525487 TCCTACAGGATTGTACGAGTGTTT 59.475 41.667 0.00 0.00 39.78 2.83
2592 3933 4.625742 CCTACAGGATTGTACGAGTGTTTG 59.374 45.833 0.00 0.00 38.76 2.93
2593 3934 4.330944 ACAGGATTGTACGAGTGTTTGA 57.669 40.909 0.00 0.00 35.25 2.69
2594 3935 4.894784 ACAGGATTGTACGAGTGTTTGAT 58.105 39.130 0.00 0.00 35.25 2.57
2595 3936 5.305585 ACAGGATTGTACGAGTGTTTGATT 58.694 37.500 0.00 0.00 35.25 2.57
2596 3937 5.179368 ACAGGATTGTACGAGTGTTTGATTG 59.821 40.000 0.00 0.00 35.25 2.67
2597 3938 5.179368 CAGGATTGTACGAGTGTTTGATTGT 59.821 40.000 0.00 0.00 0.00 2.71
2598 3939 5.179368 AGGATTGTACGAGTGTTTGATTGTG 59.821 40.000 0.00 0.00 0.00 3.33
2599 3940 3.870723 TGTACGAGTGTTTGATTGTGC 57.129 42.857 0.00 0.00 0.00 4.57
2600 3941 3.198872 TGTACGAGTGTTTGATTGTGCA 58.801 40.909 0.00 0.00 0.00 4.57
2601 3942 3.812609 TGTACGAGTGTTTGATTGTGCAT 59.187 39.130 0.00 0.00 0.00 3.96
2602 3943 4.991687 TGTACGAGTGTTTGATTGTGCATA 59.008 37.500 0.00 0.00 0.00 3.14
2603 3944 4.668576 ACGAGTGTTTGATTGTGCATAG 57.331 40.909 0.00 0.00 0.00 2.23
2604 3945 4.314961 ACGAGTGTTTGATTGTGCATAGA 58.685 39.130 0.00 0.00 0.00 1.98
2605 3946 4.754618 ACGAGTGTTTGATTGTGCATAGAA 59.245 37.500 0.00 0.00 0.00 2.10
2606 3947 5.238432 ACGAGTGTTTGATTGTGCATAGAAA 59.762 36.000 0.00 0.00 0.00 2.52
2607 3948 6.142139 CGAGTGTTTGATTGTGCATAGAAAA 58.858 36.000 0.00 0.00 0.00 2.29
2608 3949 6.636447 CGAGTGTTTGATTGTGCATAGAAAAA 59.364 34.615 0.00 0.00 0.00 1.94
2631 3972 8.712228 AAAACATAGGATTCTTTCAAAGAGGT 57.288 30.769 0.00 0.00 39.03 3.85
2632 3973 8.712228 AAACATAGGATTCTTTCAAAGAGGTT 57.288 30.769 0.00 0.00 39.03 3.50
2633 3974 8.712228 AACATAGGATTCTTTCAAAGAGGTTT 57.288 30.769 0.00 0.00 39.03 3.27
2634 3975 8.115490 ACATAGGATTCTTTCAAAGAGGTTTG 57.885 34.615 0.00 0.00 43.96 2.93
2643 3984 3.754965 TCAAAGAGGTTTGAGTGGATGG 58.245 45.455 0.00 0.00 45.82 3.51
2644 3985 3.394274 TCAAAGAGGTTTGAGTGGATGGA 59.606 43.478 0.00 0.00 45.82 3.41
2645 3986 4.141274 TCAAAGAGGTTTGAGTGGATGGAA 60.141 41.667 0.00 0.00 45.82 3.53
2646 3987 4.664688 AAGAGGTTTGAGTGGATGGAAT 57.335 40.909 0.00 0.00 0.00 3.01
2647 3988 3.960571 AGAGGTTTGAGTGGATGGAATG 58.039 45.455 0.00 0.00 0.00 2.67
2648 3989 3.331889 AGAGGTTTGAGTGGATGGAATGT 59.668 43.478 0.00 0.00 0.00 2.71
2649 3990 4.082125 GAGGTTTGAGTGGATGGAATGTT 58.918 43.478 0.00 0.00 0.00 2.71
2650 3991 4.482990 AGGTTTGAGTGGATGGAATGTTT 58.517 39.130 0.00 0.00 0.00 2.83
2651 3992 4.901250 AGGTTTGAGTGGATGGAATGTTTT 59.099 37.500 0.00 0.00 0.00 2.43
2652 3993 5.011023 AGGTTTGAGTGGATGGAATGTTTTC 59.989 40.000 0.00 0.00 0.00 2.29
2653 3994 5.011023 GGTTTGAGTGGATGGAATGTTTTCT 59.989 40.000 0.00 0.00 32.16 2.52
2654 3995 6.208599 GGTTTGAGTGGATGGAATGTTTTCTA 59.791 38.462 0.00 0.00 32.16 2.10
2655 3996 7.093771 GGTTTGAGTGGATGGAATGTTTTCTAT 60.094 37.037 0.00 0.00 35.92 1.98
2656 3997 7.395190 TTGAGTGGATGGAATGTTTTCTATG 57.605 36.000 0.00 0.00 33.62 2.23
2657 3998 6.720309 TGAGTGGATGGAATGTTTTCTATGA 58.280 36.000 0.00 0.00 33.62 2.15
2658 3999 7.174413 TGAGTGGATGGAATGTTTTCTATGAA 58.826 34.615 0.00 0.00 33.62 2.57
2659 4000 7.669304 TGAGTGGATGGAATGTTTTCTATGAAA 59.331 33.333 0.00 0.00 33.62 2.69
2660 4001 8.599624 AGTGGATGGAATGTTTTCTATGAAAT 57.400 30.769 0.00 0.00 33.62 2.17
2661 4002 9.699410 AGTGGATGGAATGTTTTCTATGAAATA 57.301 29.630 0.00 0.00 33.62 1.40
2710 4051 8.446599 AAATTCCTATGGTTTACAATCCTACG 57.553 34.615 0.00 0.00 0.00 3.51
2711 4052 6.795144 TTCCTATGGTTTACAATCCTACGA 57.205 37.500 0.00 0.00 0.00 3.43
2712 4053 6.795144 TCCTATGGTTTACAATCCTACGAA 57.205 37.500 0.00 0.00 0.00 3.85
2713 4054 7.369551 TCCTATGGTTTACAATCCTACGAAT 57.630 36.000 0.00 0.00 0.00 3.34
2714 4055 7.439381 TCCTATGGTTTACAATCCTACGAATC 58.561 38.462 0.00 0.00 0.00 2.52
2715 4056 7.070198 TCCTATGGTTTACAATCCTACGAATCA 59.930 37.037 0.00 0.00 0.00 2.57
2716 4057 7.713507 CCTATGGTTTACAATCCTACGAATCAA 59.286 37.037 0.00 0.00 0.00 2.57
2717 4058 7.931578 ATGGTTTACAATCCTACGAATCAAA 57.068 32.000 0.00 0.00 0.00 2.69
2718 4059 7.136289 TGGTTTACAATCCTACGAATCAAAC 57.864 36.000 0.00 0.00 0.00 2.93
2719 4060 6.711194 TGGTTTACAATCCTACGAATCAAACA 59.289 34.615 0.00 0.00 0.00 2.83
2720 4061 7.228906 TGGTTTACAATCCTACGAATCAAACAA 59.771 33.333 0.00 0.00 0.00 2.83
2721 4062 7.536281 GGTTTACAATCCTACGAATCAAACAAC 59.464 37.037 0.00 0.00 0.00 3.32
2722 4063 5.622770 ACAATCCTACGAATCAAACAACC 57.377 39.130 0.00 0.00 0.00 3.77
2723 4064 5.067273 ACAATCCTACGAATCAAACAACCA 58.933 37.500 0.00 0.00 0.00 3.67
2724 4065 5.533154 ACAATCCTACGAATCAAACAACCAA 59.467 36.000 0.00 0.00 0.00 3.67
2725 4066 5.880054 ATCCTACGAATCAAACAACCAAG 57.120 39.130 0.00 0.00 0.00 3.61
2726 4067 4.963373 TCCTACGAATCAAACAACCAAGA 58.037 39.130 0.00 0.00 0.00 3.02
2727 4068 5.556915 TCCTACGAATCAAACAACCAAGAT 58.443 37.500 0.00 0.00 0.00 2.40
2728 4069 6.703319 TCCTACGAATCAAACAACCAAGATA 58.297 36.000 0.00 0.00 0.00 1.98
2729 4070 6.816640 TCCTACGAATCAAACAACCAAGATAG 59.183 38.462 0.00 0.00 0.00 2.08
2730 4071 5.880054 ACGAATCAAACAACCAAGATAGG 57.120 39.130 0.00 0.00 0.00 2.57
2731 4072 5.556915 ACGAATCAAACAACCAAGATAGGA 58.443 37.500 0.00 0.00 0.00 2.94
2732 4073 6.001460 ACGAATCAAACAACCAAGATAGGAA 58.999 36.000 0.00 0.00 0.00 3.36
2733 4074 6.488683 ACGAATCAAACAACCAAGATAGGAAA 59.511 34.615 0.00 0.00 0.00 3.13
2734 4075 7.013846 ACGAATCAAACAACCAAGATAGGAAAA 59.986 33.333 0.00 0.00 0.00 2.29
2735 4076 7.865385 CGAATCAAACAACCAAGATAGGAAAAA 59.135 33.333 0.00 0.00 0.00 1.94
2736 4077 9.710900 GAATCAAACAACCAAGATAGGAAAAAT 57.289 29.630 0.00 0.00 0.00 1.82
2738 4079 9.710900 ATCAAACAACCAAGATAGGAAAAATTC 57.289 29.630 0.00 0.00 0.00 2.17
2767 4108 9.552695 AAGAATTAGAATCCTCCAAAATTCCTT 57.447 29.630 0.00 0.00 33.29 3.36
2768 4109 9.552695 AGAATTAGAATCCTCCAAAATTCCTTT 57.447 29.630 0.00 0.00 33.29 3.11
2769 4110 9.591792 GAATTAGAATCCTCCAAAATTCCTTTG 57.408 33.333 0.00 0.00 43.56 2.77
2770 4111 8.899887 ATTAGAATCCTCCAAAATTCCTTTGA 57.100 30.769 0.00 0.00 46.35 2.69
2771 4112 6.847421 AGAATCCTCCAAAATTCCTTTGAG 57.153 37.500 0.00 0.00 46.35 3.02
2772 4113 6.555711 AGAATCCTCCAAAATTCCTTTGAGA 58.444 36.000 0.00 0.00 46.35 3.27
2773 4114 7.012607 AGAATCCTCCAAAATTCCTTTGAGAA 58.987 34.615 0.00 0.00 46.35 2.87
2774 4115 7.677319 AGAATCCTCCAAAATTCCTTTGAGAAT 59.323 33.333 0.00 0.00 46.35 2.40
2775 4116 6.840780 TCCTCCAAAATTCCTTTGAGAATC 57.159 37.500 0.00 0.00 46.35 2.52
2776 4117 5.716703 TCCTCCAAAATTCCTTTGAGAATCC 59.283 40.000 0.00 0.00 46.35 3.01
2777 4118 5.718607 CCTCCAAAATTCCTTTGAGAATCCT 59.281 40.000 0.00 0.00 46.35 3.24
2778 4119 6.212187 CCTCCAAAATTCCTTTGAGAATCCTT 59.788 38.462 0.00 0.00 46.35 3.36
2779 4120 7.256439 CCTCCAAAATTCCTTTGAGAATCCTTT 60.256 37.037 0.00 0.00 46.35 3.11
2780 4121 7.444299 TCCAAAATTCCTTTGAGAATCCTTTG 58.556 34.615 0.00 0.00 46.35 2.77
2781 4122 7.289782 TCCAAAATTCCTTTGAGAATCCTTTGA 59.710 33.333 10.70 0.00 46.35 2.69
2782 4123 7.933033 CCAAAATTCCTTTGAGAATCCTTTGAA 59.067 33.333 10.70 0.00 46.35 2.69
2783 4124 9.498176 CAAAATTCCTTTGAGAATCCTTTGAAT 57.502 29.630 5.90 0.00 46.35 2.57
2784 4125 9.716531 AAAATTCCTTTGAGAATCCTTTGAATC 57.283 29.630 0.00 0.00 35.40 2.52
2785 4126 8.426569 AATTCCTTTGAGAATCCTTTGAATCA 57.573 30.769 0.00 0.00 35.40 2.57
2786 4127 7.838079 TTCCTTTGAGAATCCTTTGAATCAA 57.162 32.000 0.00 0.00 0.00 2.57
2787 4128 7.838079 TCCTTTGAGAATCCTTTGAATCAAA 57.162 32.000 8.25 8.25 33.82 2.69
2800 4141 5.964958 TTGAATCAAAGAAGCCCTTACTG 57.035 39.130 0.00 0.00 34.00 2.74
2824 4165 6.658816 TGTCCATTTCTTAGCAATACACACAT 59.341 34.615 0.00 0.00 0.00 3.21
2879 4220 0.100503 GTCTGCACCAACACAACACC 59.899 55.000 0.00 0.00 0.00 4.16
3014 4355 9.838339 CCTATATAATGGTTTGTTCTCTTCAGT 57.162 33.333 0.00 0.00 0.00 3.41
3030 4371 3.777106 TCAGTCAACAGCTCCTTGATT 57.223 42.857 6.63 0.81 30.46 2.57
3167 4508 1.746470 TTGGAGATCAGCTGCACATG 58.254 50.000 9.47 0.00 45.24 3.21
3208 4549 8.959548 ACATATAGTTCAAAATGATCAAGCACA 58.040 29.630 0.00 0.00 0.00 4.57
3209 4550 9.229784 CATATAGTTCAAAATGATCAAGCACAC 57.770 33.333 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.530323 AACCCGTCTTATTGTGCCAC 58.470 50.000 0.00 0.00 0.00 5.01
8 9 3.365969 CCTTGAAACCCGTCTTATTGTGC 60.366 47.826 0.00 0.00 0.00 4.57
9 10 4.069304 TCCTTGAAACCCGTCTTATTGTG 58.931 43.478 0.00 0.00 0.00 3.33
18 20 1.818674 GCATGATTCCTTGAAACCCGT 59.181 47.619 0.00 0.00 0.00 5.28
19 21 2.094675 AGCATGATTCCTTGAAACCCG 58.905 47.619 0.00 0.00 0.00 5.28
34 36 3.682858 CCTTTCATTCTTTGCCAAGCATG 59.317 43.478 4.13 4.13 38.76 4.06
38 40 4.060205 CCAACCTTTCATTCTTTGCCAAG 58.940 43.478 0.00 0.00 0.00 3.61
43 45 4.829064 TCGTCCAACCTTTCATTCTTTG 57.171 40.909 0.00 0.00 0.00 2.77
44 46 4.261614 GCTTCGTCCAACCTTTCATTCTTT 60.262 41.667 0.00 0.00 0.00 2.52
52 55 1.141053 AGAGTGCTTCGTCCAACCTTT 59.859 47.619 0.00 0.00 0.00 3.11
74 77 0.818040 GTGTTCCGTTTCCTGCCAGT 60.818 55.000 0.00 0.00 0.00 4.00
75 78 0.535102 AGTGTTCCGTTTCCTGCCAG 60.535 55.000 0.00 0.00 0.00 4.85
76 79 0.759959 TAGTGTTCCGTTTCCTGCCA 59.240 50.000 0.00 0.00 0.00 4.92
77 80 2.109425 ATAGTGTTCCGTTTCCTGCC 57.891 50.000 0.00 0.00 0.00 4.85
140 151 7.399245 ACTTTACAAAGTTTGGCTTAAGACA 57.601 32.000 19.45 7.01 46.52 3.41
162 173 6.552725 TGAGATCTAGCCACATCTATCAAACT 59.447 38.462 0.00 0.00 29.01 2.66
233 253 5.940470 TCTTTCTAGTTTGCCTTTCTCCATC 59.060 40.000 0.00 0.00 0.00 3.51
235 255 5.304686 TCTTTCTAGTTTGCCTTTCTCCA 57.695 39.130 0.00 0.00 0.00 3.86
276 300 6.999871 TGCTATATTCCTTTGATCTTGCATGA 59.000 34.615 4.57 4.57 0.00 3.07
285 309 6.997655 TCAGTCGATGCTATATTCCTTTGAT 58.002 36.000 0.00 0.00 0.00 2.57
396 446 7.894753 TGGTAAATCAATAGCATTTGATCCA 57.105 32.000 12.77 12.67 43.73 3.41
468 598 9.482627 AAATCGATGTTGGCATAAAAAGTTTAA 57.517 25.926 0.00 0.00 35.07 1.52
473 603 7.741216 CACAAAAATCGATGTTGGCATAAAAAG 59.259 33.333 20.35 0.00 35.07 2.27
474 604 7.307632 CCACAAAAATCGATGTTGGCATAAAAA 60.308 33.333 20.35 0.00 35.07 1.94
475 605 6.146837 CCACAAAAATCGATGTTGGCATAAAA 59.853 34.615 20.35 0.00 35.07 1.52
476 606 5.636965 CCACAAAAATCGATGTTGGCATAAA 59.363 36.000 20.35 0.00 35.07 1.40
477 607 5.167121 CCACAAAAATCGATGTTGGCATAA 58.833 37.500 20.35 0.00 35.07 1.90
478 608 4.381398 CCCACAAAAATCGATGTTGGCATA 60.381 41.667 20.35 0.00 35.07 3.14
479 609 3.587923 CCACAAAAATCGATGTTGGCAT 58.412 40.909 20.35 3.54 38.18 4.40
480 610 2.288702 CCCACAAAAATCGATGTTGGCA 60.289 45.455 20.35 0.00 0.00 4.92
481 611 2.336667 CCCACAAAAATCGATGTTGGC 58.663 47.619 20.35 0.00 0.00 4.52
482 612 2.336667 GCCCACAAAAATCGATGTTGG 58.663 47.619 20.35 12.80 35.90 3.77
483 613 1.984990 CGCCCACAAAAATCGATGTTG 59.015 47.619 16.62 16.62 0.00 3.33
484 614 1.611491 ACGCCCACAAAAATCGATGTT 59.389 42.857 0.00 0.00 0.00 2.71
485 615 1.068610 CACGCCCACAAAAATCGATGT 60.069 47.619 0.00 0.00 0.00 3.06
486 616 1.616620 CACGCCCACAAAAATCGATG 58.383 50.000 0.00 0.00 0.00 3.84
487 617 0.109319 GCACGCCCACAAAAATCGAT 60.109 50.000 0.00 0.00 0.00 3.59
488 618 1.169661 AGCACGCCCACAAAAATCGA 61.170 50.000 0.00 0.00 0.00 3.59
489 619 0.729140 GAGCACGCCCACAAAAATCG 60.729 55.000 0.00 0.00 0.00 3.34
490 620 0.313672 TGAGCACGCCCACAAAAATC 59.686 50.000 0.00 0.00 0.00 2.17
491 621 0.314935 CTGAGCACGCCCACAAAAAT 59.685 50.000 0.00 0.00 0.00 1.82
492 622 1.034838 ACTGAGCACGCCCACAAAAA 61.035 50.000 0.00 0.00 0.00 1.94
493 623 1.034838 AACTGAGCACGCCCACAAAA 61.035 50.000 0.00 0.00 0.00 2.44
494 624 0.179043 TAACTGAGCACGCCCACAAA 60.179 50.000 0.00 0.00 0.00 2.83
495 625 0.179043 TTAACTGAGCACGCCCACAA 60.179 50.000 0.00 0.00 0.00 3.33
496 626 0.179043 TTTAACTGAGCACGCCCACA 60.179 50.000 0.00 0.00 0.00 4.17
497 627 0.237498 GTTTAACTGAGCACGCCCAC 59.763 55.000 0.00 0.00 0.00 4.61
498 628 0.179043 TGTTTAACTGAGCACGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
499 629 0.517316 CTGTTTAACTGAGCACGCCC 59.483 55.000 0.00 0.00 0.00 6.13
500 630 1.508632 TCTGTTTAACTGAGCACGCC 58.491 50.000 0.53 0.00 0.00 5.68
501 631 3.602390 TTTCTGTTTAACTGAGCACGC 57.398 42.857 4.95 0.00 0.00 5.34
502 632 4.904116 TGTTTTCTGTTTAACTGAGCACG 58.096 39.130 4.95 0.00 0.00 5.34
503 633 6.322491 AGTTGTTTTCTGTTTAACTGAGCAC 58.678 36.000 4.95 6.70 31.00 4.40
504 634 6.509418 AGTTGTTTTCTGTTTAACTGAGCA 57.491 33.333 4.95 4.11 31.00 4.26
505 635 7.812309 AAAGTTGTTTTCTGTTTAACTGAGC 57.188 32.000 4.95 1.96 32.42 4.26
531 661 1.067142 CACTAGGCCTACACGCTCAAA 60.067 52.381 8.91 0.00 0.00 2.69
534 664 0.100861 GACACTAGGCCTACACGCTC 59.899 60.000 8.91 0.00 0.00 5.03
535 665 0.611062 TGACACTAGGCCTACACGCT 60.611 55.000 8.91 0.00 0.00 5.07
536 666 0.245539 TTGACACTAGGCCTACACGC 59.754 55.000 8.91 0.00 0.00 5.34
537 667 2.094182 ACATTGACACTAGGCCTACACG 60.094 50.000 8.91 1.60 0.00 4.49
538 668 3.611766 ACATTGACACTAGGCCTACAC 57.388 47.619 8.91 1.23 0.00 2.90
539 669 3.580895 TCAACATTGACACTAGGCCTACA 59.419 43.478 8.91 2.02 31.01 2.74
554 694 1.072331 ACCGAGCCTGTTCTCAACATT 59.928 47.619 0.00 0.00 41.26 2.71
609 749 0.110823 GTCACCGTCACGCATCAAAC 60.111 55.000 0.00 0.00 0.00 2.93
631 1935 6.962182 TCATCCATGACCAATTATCCTATCC 58.038 40.000 0.00 0.00 0.00 2.59
705 2009 2.360475 GGTGAAGGCTGCTGGGAC 60.360 66.667 0.00 0.00 0.00 4.46
706 2010 1.719063 AAAGGTGAAGGCTGCTGGGA 61.719 55.000 0.00 0.00 0.00 4.37
707 2011 1.228675 AAAGGTGAAGGCTGCTGGG 60.229 57.895 0.00 0.00 0.00 4.45
708 2012 0.251077 AGAAAGGTGAAGGCTGCTGG 60.251 55.000 0.00 0.00 0.00 4.85
709 2013 1.268899 CAAGAAAGGTGAAGGCTGCTG 59.731 52.381 0.00 0.00 0.00 4.41
710 2014 1.143684 TCAAGAAAGGTGAAGGCTGCT 59.856 47.619 0.00 0.00 0.00 4.24
711 2015 1.268079 GTCAAGAAAGGTGAAGGCTGC 59.732 52.381 0.00 0.00 0.00 5.25
712 2016 1.882623 GGTCAAGAAAGGTGAAGGCTG 59.117 52.381 0.00 0.00 0.00 4.85
718 2030 3.557898 GCTCATCTGGTCAAGAAAGGTGA 60.558 47.826 0.00 0.00 38.79 4.02
740 2052 0.807667 CTGTAGTGGCGGCTAAGCTG 60.808 60.000 11.43 0.00 38.08 4.24
786 2098 0.466922 GGATCATGTGGCCAGGGAAG 60.467 60.000 5.11 0.00 0.00 3.46
788 2100 1.619057 TGGATCATGTGGCCAGGGA 60.619 57.895 5.11 4.16 0.00 4.20
792 2104 0.035152 GACTGTGGATCATGTGGCCA 60.035 55.000 0.00 0.00 0.00 5.36
808 2120 5.098663 TCCCATTTAAGTAAGGTGAGGACT 58.901 41.667 0.00 0.00 0.00 3.85
809 2121 5.431179 TCCCATTTAAGTAAGGTGAGGAC 57.569 43.478 0.00 0.00 0.00 3.85
823 2135 7.308770 CGTCGTATCCATACTAGTTCCCATTTA 60.309 40.741 0.00 0.00 0.00 1.40
827 2139 3.817084 CGTCGTATCCATACTAGTTCCCA 59.183 47.826 0.00 0.00 0.00 4.37
828 2140 3.817647 ACGTCGTATCCATACTAGTTCCC 59.182 47.826 0.00 0.00 0.00 3.97
829 2141 4.320057 CCACGTCGTATCCATACTAGTTCC 60.320 50.000 0.00 0.00 0.00 3.62
965 2279 4.032672 CGTGAGCTCTGATCTTTGATCAAC 59.967 45.833 16.19 0.00 0.00 3.18
987 2309 3.092192 CTCCATTGCTGCGTGCTCG 62.092 63.158 3.31 3.31 43.37 5.03
1012 2334 0.463833 GGAATGGGCTTCGAATCGGT 60.464 55.000 1.76 0.00 34.45 4.69
1017 2339 1.745115 CAGCGGAATGGGCTTCGAA 60.745 57.895 0.00 0.00 39.08 3.71
1020 2342 0.464373 TCATCAGCGGAATGGGCTTC 60.464 55.000 0.00 0.00 39.08 3.86
1029 2351 3.135457 TACGGCGTCATCAGCGGA 61.135 61.111 19.21 0.00 38.16 5.54
1549 2871 0.839853 AAAGCAGAGGAGAGCAGGGT 60.840 55.000 0.00 0.00 0.00 4.34
1550 2872 0.392729 CAAAGCAGAGGAGAGCAGGG 60.393 60.000 0.00 0.00 0.00 4.45
1551 2873 1.025647 GCAAAGCAGAGGAGAGCAGG 61.026 60.000 0.00 0.00 0.00 4.85
1552 2874 0.321387 TGCAAAGCAGAGGAGAGCAG 60.321 55.000 0.00 0.00 33.32 4.24
1595 2917 2.169352 AGCAGAGTGTCAACAGAGTGTT 59.831 45.455 0.00 0.00 42.08 3.32
1596 2918 1.759445 AGCAGAGTGTCAACAGAGTGT 59.241 47.619 0.00 0.00 0.00 3.55
1597 2919 2.522836 AGCAGAGTGTCAACAGAGTG 57.477 50.000 0.00 0.00 0.00 3.51
1600 2922 1.942657 GCAAAGCAGAGTGTCAACAGA 59.057 47.619 0.00 0.00 0.00 3.41
1601 2923 1.945394 AGCAAAGCAGAGTGTCAACAG 59.055 47.619 0.00 0.00 0.00 3.16
1602 2924 1.942657 GAGCAAAGCAGAGTGTCAACA 59.057 47.619 0.00 0.00 0.00 3.33
1603 2925 2.032204 CAGAGCAAAGCAGAGTGTCAAC 60.032 50.000 0.00 0.00 0.00 3.18
1606 2929 0.516439 GCAGAGCAAAGCAGAGTGTC 59.484 55.000 0.00 0.00 0.00 3.67
1776 3111 2.032681 ACCTCCTTTGCGACAGCC 59.967 61.111 0.00 0.00 44.33 4.85
1779 3114 2.429930 CCCACCTCCTTTGCGACA 59.570 61.111 0.00 0.00 0.00 4.35
1839 3174 1.663379 CGGAGTCGTGGCAGTCCATA 61.663 60.000 0.00 0.00 45.62 2.74
1923 3264 1.182667 CCATACGGGGCTCGATCATA 58.817 55.000 16.65 0.00 42.43 2.15
1938 3279 2.897207 CCGTCAACGAGGGCCATA 59.103 61.111 6.18 0.00 43.02 2.74
2125 3466 2.951745 CGCGTTGAGCTCTAGCCG 60.952 66.667 16.19 9.41 45.59 5.52
2252 3593 7.660112 TGAATTTCACATGGCAATATATGGAC 58.340 34.615 0.00 0.00 0.00 4.02
2299 3640 1.071314 TGGGGAAAAGGGAAGAGCCA 61.071 55.000 0.00 0.00 38.95 4.75
2369 3710 5.508200 ACTTAAACACTCGGAATTTTGCA 57.492 34.783 0.00 0.00 0.00 4.08
2436 3777 7.651704 CACTTTCAAACTTTTGGAATACGGAAT 59.348 33.333 1.94 0.00 35.26 3.01
2439 3780 6.270064 ACACTTTCAAACTTTTGGAATACGG 58.730 36.000 1.94 0.00 35.26 4.02
2505 3846 1.201987 CCGCGTTTTGGAAATCCTACG 60.202 52.381 4.92 13.93 38.26 3.51
2506 3847 1.131693 CCCGCGTTTTGGAAATCCTAC 59.868 52.381 4.92 0.00 36.82 3.18
2508 3849 0.250989 TCCCGCGTTTTGGAAATCCT 60.251 50.000 4.92 0.00 36.82 3.24
2510 3851 2.647529 ATTCCCGCGTTTTGGAAATC 57.352 45.000 16.73 0.00 43.50 2.17
2511 3852 2.425668 CCTATTCCCGCGTTTTGGAAAT 59.574 45.455 16.73 9.31 43.50 2.17
2515 3856 1.455248 TTCCTATTCCCGCGTTTTGG 58.545 50.000 4.92 0.00 0.00 3.28
2518 3859 2.885894 TGTTTTTCCTATTCCCGCGTTT 59.114 40.909 4.92 0.00 0.00 3.60
2519 3860 2.506444 TGTTTTTCCTATTCCCGCGTT 58.494 42.857 4.92 0.00 0.00 4.84
2522 3863 2.100749 CCCATGTTTTTCCTATTCCCGC 59.899 50.000 0.00 0.00 0.00 6.13
2523 3864 3.626930 TCCCATGTTTTTCCTATTCCCG 58.373 45.455 0.00 0.00 0.00 5.14
2524 3865 7.066781 TCTAATCCCATGTTTTTCCTATTCCC 58.933 38.462 0.00 0.00 0.00 3.97
2525 3866 7.780271 ACTCTAATCCCATGTTTTTCCTATTCC 59.220 37.037 0.00 0.00 0.00 3.01
2526 3867 8.624776 CACTCTAATCCCATGTTTTTCCTATTC 58.375 37.037 0.00 0.00 0.00 1.75
2528 3869 7.062957 CCACTCTAATCCCATGTTTTTCCTAT 58.937 38.462 0.00 0.00 0.00 2.57
2529 3870 6.216662 TCCACTCTAATCCCATGTTTTTCCTA 59.783 38.462 0.00 0.00 0.00 2.94
2530 3871 5.015178 TCCACTCTAATCCCATGTTTTTCCT 59.985 40.000 0.00 0.00 0.00 3.36
2532 3873 6.834168 TTCCACTCTAATCCCATGTTTTTC 57.166 37.500 0.00 0.00 0.00 2.29
2533 3874 6.725834 ACATTCCACTCTAATCCCATGTTTTT 59.274 34.615 0.00 0.00 0.00 1.94
2534 3875 6.256053 ACATTCCACTCTAATCCCATGTTTT 58.744 36.000 0.00 0.00 0.00 2.43
2535 3876 5.831103 ACATTCCACTCTAATCCCATGTTT 58.169 37.500 0.00 0.00 0.00 2.83
2536 3877 5.440610 GACATTCCACTCTAATCCCATGTT 58.559 41.667 0.00 0.00 0.00 2.71
2537 3878 4.443457 CGACATTCCACTCTAATCCCATGT 60.443 45.833 0.00 0.00 0.00 3.21
2538 3879 4.060900 CGACATTCCACTCTAATCCCATG 58.939 47.826 0.00 0.00 0.00 3.66
2539 3880 3.711704 ACGACATTCCACTCTAATCCCAT 59.288 43.478 0.00 0.00 0.00 4.00
2540 3881 3.104512 ACGACATTCCACTCTAATCCCA 58.895 45.455 0.00 0.00 0.00 4.37
2542 3883 4.657436 AGACGACATTCCACTCTAATCC 57.343 45.455 0.00 0.00 0.00 3.01
2543 3884 5.651530 TCAAGACGACATTCCACTCTAATC 58.348 41.667 0.00 0.00 0.00 1.75
2544 3885 5.661056 TCAAGACGACATTCCACTCTAAT 57.339 39.130 0.00 0.00 0.00 1.73
2545 3886 5.462530 TTCAAGACGACATTCCACTCTAA 57.537 39.130 0.00 0.00 0.00 2.10
2548 3889 3.619038 GGATTCAAGACGACATTCCACTC 59.381 47.826 0.00 0.00 0.00 3.51
2549 3890 3.261897 AGGATTCAAGACGACATTCCACT 59.738 43.478 0.00 0.00 0.00 4.00
2550 3891 3.600388 AGGATTCAAGACGACATTCCAC 58.400 45.455 0.00 0.00 0.00 4.02
2551 3892 3.981071 AGGATTCAAGACGACATTCCA 57.019 42.857 0.00 0.00 0.00 3.53
2552 3893 4.755411 TGTAGGATTCAAGACGACATTCC 58.245 43.478 0.00 0.00 0.00 3.01
2553 3894 4.806247 CCTGTAGGATTCAAGACGACATTC 59.194 45.833 0.00 0.00 37.39 2.67
2555 3896 4.023980 TCCTGTAGGATTCAAGACGACAT 58.976 43.478 0.00 0.00 39.78 3.06
2556 3897 3.427573 TCCTGTAGGATTCAAGACGACA 58.572 45.455 0.00 0.00 39.78 4.35
2569 3910 4.451629 AACACTCGTACAATCCTGTAGG 57.548 45.455 0.00 0.00 42.66 3.18
2570 3911 5.466819 TCAAACACTCGTACAATCCTGTAG 58.533 41.667 0.00 0.00 38.73 2.74
2573 3914 5.179368 ACAATCAAACACTCGTACAATCCTG 59.821 40.000 0.00 0.00 0.00 3.86
2574 3915 5.179368 CACAATCAAACACTCGTACAATCCT 59.821 40.000 0.00 0.00 0.00 3.24
2575 3916 5.382303 CACAATCAAACACTCGTACAATCC 58.618 41.667 0.00 0.00 0.00 3.01
2576 3917 4.846137 GCACAATCAAACACTCGTACAATC 59.154 41.667 0.00 0.00 0.00 2.67
2577 3918 4.274705 TGCACAATCAAACACTCGTACAAT 59.725 37.500 0.00 0.00 0.00 2.71
2578 3919 3.623510 TGCACAATCAAACACTCGTACAA 59.376 39.130 0.00 0.00 0.00 2.41
2579 3920 3.198872 TGCACAATCAAACACTCGTACA 58.801 40.909 0.00 0.00 0.00 2.90
2580 3921 3.870723 TGCACAATCAAACACTCGTAC 57.129 42.857 0.00 0.00 0.00 3.67
2581 3922 5.474825 TCTATGCACAATCAAACACTCGTA 58.525 37.500 0.00 0.00 0.00 3.43
2582 3923 4.314961 TCTATGCACAATCAAACACTCGT 58.685 39.130 0.00 0.00 0.00 4.18
2583 3924 4.926860 TCTATGCACAATCAAACACTCG 57.073 40.909 0.00 0.00 0.00 4.18
2584 3925 7.928908 TTTTTCTATGCACAATCAAACACTC 57.071 32.000 0.00 0.00 0.00 3.51
2605 3946 9.147732 ACCTCTTTGAAAGAATCCTATGTTTTT 57.852 29.630 9.15 0.00 37.02 1.94
2606 3947 8.712228 ACCTCTTTGAAAGAATCCTATGTTTT 57.288 30.769 9.15 0.00 37.02 2.43
2607 3948 8.712228 AACCTCTTTGAAAGAATCCTATGTTT 57.288 30.769 9.15 0.00 37.02 2.83
2608 3949 8.579863 CAAACCTCTTTGAAAGAATCCTATGTT 58.420 33.333 9.15 2.17 39.43 2.71
2609 3950 7.944554 TCAAACCTCTTTGAAAGAATCCTATGT 59.055 33.333 9.15 0.00 42.34 2.29
2610 3951 8.340618 TCAAACCTCTTTGAAAGAATCCTATG 57.659 34.615 9.15 4.41 42.34 2.23
2611 3952 8.166726 ACTCAAACCTCTTTGAAAGAATCCTAT 58.833 33.333 9.15 0.00 44.18 2.57
2612 3953 7.445402 CACTCAAACCTCTTTGAAAGAATCCTA 59.555 37.037 9.15 0.00 44.18 2.94
2613 3954 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
2614 3955 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
2615 3956 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
2616 3957 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
2617 3958 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
2618 3959 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
2619 3960 5.278660 CCATCCACTCAAACCTCTTTGAAAG 60.279 44.000 0.00 0.00 44.18 2.62
2620 3961 4.584325 CCATCCACTCAAACCTCTTTGAAA 59.416 41.667 0.00 0.00 44.18 2.69
2621 3962 4.141274 TCCATCCACTCAAACCTCTTTGAA 60.141 41.667 0.00 0.00 44.18 2.69
2622 3963 3.394274 TCCATCCACTCAAACCTCTTTGA 59.606 43.478 0.00 0.00 42.93 2.69
2623 3964 3.754965 TCCATCCACTCAAACCTCTTTG 58.245 45.455 0.00 0.00 38.56 2.77
2624 3965 4.453480 TTCCATCCACTCAAACCTCTTT 57.547 40.909 0.00 0.00 0.00 2.52
2625 3966 4.202609 ACATTCCATCCACTCAAACCTCTT 60.203 41.667 0.00 0.00 0.00 2.85
2626 3967 3.331889 ACATTCCATCCACTCAAACCTCT 59.668 43.478 0.00 0.00 0.00 3.69
2627 3968 3.690460 ACATTCCATCCACTCAAACCTC 58.310 45.455 0.00 0.00 0.00 3.85
2628 3969 3.814504 ACATTCCATCCACTCAAACCT 57.185 42.857 0.00 0.00 0.00 3.50
2629 3970 4.871933 AAACATTCCATCCACTCAAACC 57.128 40.909 0.00 0.00 0.00 3.27
2630 3971 6.089249 AGAAAACATTCCATCCACTCAAAC 57.911 37.500 0.00 0.00 0.00 2.93
2631 3972 7.669304 TCATAGAAAACATTCCATCCACTCAAA 59.331 33.333 0.00 0.00 0.00 2.69
2632 3973 7.174413 TCATAGAAAACATTCCATCCACTCAA 58.826 34.615 0.00 0.00 0.00 3.02
2633 3974 6.720309 TCATAGAAAACATTCCATCCACTCA 58.280 36.000 0.00 0.00 0.00 3.41
2634 3975 7.630242 TTCATAGAAAACATTCCATCCACTC 57.370 36.000 0.00 0.00 0.00 3.51
2635 3976 8.599624 ATTTCATAGAAAACATTCCATCCACT 57.400 30.769 0.00 0.00 0.00 4.00
2684 4025 8.899771 CGTAGGATTGTAAACCATAGGAATTTT 58.100 33.333 0.00 0.00 0.00 1.82
2685 4026 8.269317 TCGTAGGATTGTAAACCATAGGAATTT 58.731 33.333 0.00 0.00 0.00 1.82
2686 4027 7.798071 TCGTAGGATTGTAAACCATAGGAATT 58.202 34.615 0.00 0.00 0.00 2.17
2687 4028 7.369551 TCGTAGGATTGTAAACCATAGGAAT 57.630 36.000 0.00 0.00 0.00 3.01
2688 4029 6.795144 TCGTAGGATTGTAAACCATAGGAA 57.205 37.500 0.00 0.00 0.00 3.36
2689 4030 6.795144 TTCGTAGGATTGTAAACCATAGGA 57.205 37.500 0.00 0.00 0.00 2.94
2690 4031 7.214381 TGATTCGTAGGATTGTAAACCATAGG 58.786 38.462 0.00 0.00 0.00 2.57
2691 4032 8.657074 TTGATTCGTAGGATTGTAAACCATAG 57.343 34.615 0.00 0.00 0.00 2.23
2692 4033 8.885722 GTTTGATTCGTAGGATTGTAAACCATA 58.114 33.333 0.00 0.00 0.00 2.74
2693 4034 7.392113 TGTTTGATTCGTAGGATTGTAAACCAT 59.608 33.333 0.00 0.00 0.00 3.55
2694 4035 6.711194 TGTTTGATTCGTAGGATTGTAAACCA 59.289 34.615 0.00 0.00 0.00 3.67
2695 4036 7.136289 TGTTTGATTCGTAGGATTGTAAACC 57.864 36.000 0.00 0.00 0.00 3.27
2696 4037 7.536281 GGTTGTTTGATTCGTAGGATTGTAAAC 59.464 37.037 0.00 0.00 0.00 2.01
2697 4038 7.228906 TGGTTGTTTGATTCGTAGGATTGTAAA 59.771 33.333 0.00 0.00 0.00 2.01
2698 4039 6.711194 TGGTTGTTTGATTCGTAGGATTGTAA 59.289 34.615 0.00 0.00 0.00 2.41
2699 4040 6.231951 TGGTTGTTTGATTCGTAGGATTGTA 58.768 36.000 0.00 0.00 0.00 2.41
2700 4041 5.067273 TGGTTGTTTGATTCGTAGGATTGT 58.933 37.500 0.00 0.00 0.00 2.71
2701 4042 5.621197 TGGTTGTTTGATTCGTAGGATTG 57.379 39.130 0.00 0.00 0.00 2.67
2702 4043 6.001460 TCTTGGTTGTTTGATTCGTAGGATT 58.999 36.000 0.00 0.00 0.00 3.01
2703 4044 5.556915 TCTTGGTTGTTTGATTCGTAGGAT 58.443 37.500 0.00 0.00 0.00 3.24
2704 4045 4.963373 TCTTGGTTGTTTGATTCGTAGGA 58.037 39.130 0.00 0.00 0.00 2.94
2705 4046 5.880054 ATCTTGGTTGTTTGATTCGTAGG 57.120 39.130 0.00 0.00 0.00 3.18
2706 4047 6.816640 TCCTATCTTGGTTGTTTGATTCGTAG 59.183 38.462 0.00 0.00 0.00 3.51
2707 4048 6.703319 TCCTATCTTGGTTGTTTGATTCGTA 58.297 36.000 0.00 0.00 0.00 3.43
2708 4049 5.556915 TCCTATCTTGGTTGTTTGATTCGT 58.443 37.500 0.00 0.00 0.00 3.85
2709 4050 6.494893 TTCCTATCTTGGTTGTTTGATTCG 57.505 37.500 0.00 0.00 0.00 3.34
2710 4051 9.710900 ATTTTTCCTATCTTGGTTGTTTGATTC 57.289 29.630 0.00 0.00 0.00 2.52
2712 4053 9.710900 GAATTTTTCCTATCTTGGTTGTTTGAT 57.289 29.630 0.00 0.00 0.00 2.57
2713 4054 8.147704 GGAATTTTTCCTATCTTGGTTGTTTGA 58.852 33.333 0.00 0.00 46.57 2.69
2714 4055 8.310406 GGAATTTTTCCTATCTTGGTTGTTTG 57.690 34.615 0.00 0.00 46.57 2.93
2741 4082 9.552695 AAGGAATTTTGGAGGATTCTAATTCTT 57.447 29.630 6.84 0.00 33.75 2.52
2742 4083 9.552695 AAAGGAATTTTGGAGGATTCTAATTCT 57.447 29.630 6.84 0.00 33.75 2.40
2743 4084 9.591792 CAAAGGAATTTTGGAGGATTCTAATTC 57.408 33.333 0.00 0.00 41.99 2.17
2744 4085 9.325248 TCAAAGGAATTTTGGAGGATTCTAATT 57.675 29.630 0.37 0.00 45.05 1.40
2745 4086 8.899887 TCAAAGGAATTTTGGAGGATTCTAAT 57.100 30.769 0.37 0.00 45.05 1.73
2746 4087 8.170061 TCTCAAAGGAATTTTGGAGGATTCTAA 58.830 33.333 0.37 0.00 45.05 2.10
2747 4088 7.698912 TCTCAAAGGAATTTTGGAGGATTCTA 58.301 34.615 0.37 0.00 45.05 2.10
2748 4089 6.555711 TCTCAAAGGAATTTTGGAGGATTCT 58.444 36.000 0.37 0.00 45.05 2.40
2749 4090 6.840780 TCTCAAAGGAATTTTGGAGGATTC 57.159 37.500 0.37 0.00 45.05 2.52
2750 4091 7.093156 GGATTCTCAAAGGAATTTTGGAGGATT 60.093 37.037 0.37 0.00 45.05 3.01
2751 4092 6.382282 GGATTCTCAAAGGAATTTTGGAGGAT 59.618 38.462 0.37 0.00 45.05 3.24
2752 4093 5.716703 GGATTCTCAAAGGAATTTTGGAGGA 59.283 40.000 0.37 0.00 45.05 3.71
2753 4094 5.718607 AGGATTCTCAAAGGAATTTTGGAGG 59.281 40.000 0.37 0.00 45.05 4.30
2754 4095 6.847421 AGGATTCTCAAAGGAATTTTGGAG 57.153 37.500 0.37 0.00 45.05 3.86
2755 4096 7.289782 TCAAAGGATTCTCAAAGGAATTTTGGA 59.710 33.333 11.22 3.43 45.05 3.53
2756 4097 7.444299 TCAAAGGATTCTCAAAGGAATTTTGG 58.556 34.615 11.22 1.84 45.05 3.28
2757 4098 8.891671 TTCAAAGGATTCTCAAAGGAATTTTG 57.108 30.769 0.00 0.00 46.09 2.44
2758 4099 9.716531 GATTCAAAGGATTCTCAAAGGAATTTT 57.283 29.630 0.00 0.00 36.24 1.82
2759 4100 8.873144 TGATTCAAAGGATTCTCAAAGGAATTT 58.127 29.630 0.00 0.00 36.24 1.82
2760 4101 8.426569 TGATTCAAAGGATTCTCAAAGGAATT 57.573 30.769 0.00 0.00 36.24 2.17
2761 4102 8.426569 TTGATTCAAAGGATTCTCAAAGGAAT 57.573 30.769 0.00 0.00 38.47 3.01
2762 4103 7.838079 TTGATTCAAAGGATTCTCAAAGGAA 57.162 32.000 0.00 0.00 0.00 3.36
2763 4104 7.838079 TTTGATTCAAAGGATTCTCAAAGGA 57.162 32.000 7.74 0.00 31.21 3.36
2777 4118 5.833131 ACAGTAAGGGCTTCTTTGATTCAAA 59.167 36.000 11.19 11.19 36.93 2.69
2778 4119 5.385198 ACAGTAAGGGCTTCTTTGATTCAA 58.615 37.500 0.00 0.00 36.93 2.69
2779 4120 4.985538 ACAGTAAGGGCTTCTTTGATTCA 58.014 39.130 0.00 0.00 36.93 2.57
2780 4121 4.396478 GGACAGTAAGGGCTTCTTTGATTC 59.604 45.833 0.00 0.00 36.93 2.52
2781 4122 4.202567 TGGACAGTAAGGGCTTCTTTGATT 60.203 41.667 0.00 0.00 36.93 2.57
2782 4123 3.330701 TGGACAGTAAGGGCTTCTTTGAT 59.669 43.478 0.00 0.00 36.93 2.57
2783 4124 2.708861 TGGACAGTAAGGGCTTCTTTGA 59.291 45.455 0.00 0.00 36.93 2.69
2784 4125 3.140325 TGGACAGTAAGGGCTTCTTTG 57.860 47.619 0.00 0.00 36.93 2.77
2785 4126 4.388577 AATGGACAGTAAGGGCTTCTTT 57.611 40.909 0.00 0.00 36.93 2.52
2786 4127 4.043435 AGAAATGGACAGTAAGGGCTTCTT 59.957 41.667 0.00 0.00 39.40 2.52
2787 4128 3.589288 AGAAATGGACAGTAAGGGCTTCT 59.411 43.478 0.00 0.00 0.00 2.85
2788 4129 3.956744 AGAAATGGACAGTAAGGGCTTC 58.043 45.455 0.00 0.00 0.00 3.86
2789 4130 4.388577 AAGAAATGGACAGTAAGGGCTT 57.611 40.909 0.00 0.00 0.00 4.35
2790 4131 4.626529 GCTAAGAAATGGACAGTAAGGGCT 60.627 45.833 0.00 0.00 0.00 5.19
2791 4132 3.628032 GCTAAGAAATGGACAGTAAGGGC 59.372 47.826 0.00 0.00 0.00 5.19
2792 4133 4.843728 TGCTAAGAAATGGACAGTAAGGG 58.156 43.478 0.00 0.00 0.00 3.95
2793 4134 7.552687 TGTATTGCTAAGAAATGGACAGTAAGG 59.447 37.037 0.00 0.00 0.00 2.69
2794 4135 8.391106 GTGTATTGCTAAGAAATGGACAGTAAG 58.609 37.037 0.00 0.00 0.00 2.34
2795 4136 7.880713 TGTGTATTGCTAAGAAATGGACAGTAA 59.119 33.333 0.00 0.00 0.00 2.24
2796 4137 7.333423 GTGTGTATTGCTAAGAAATGGACAGTA 59.667 37.037 0.00 0.00 0.00 2.74
2797 4138 6.149474 GTGTGTATTGCTAAGAAATGGACAGT 59.851 38.462 0.00 0.00 0.00 3.55
2798 4139 6.149308 TGTGTGTATTGCTAAGAAATGGACAG 59.851 38.462 0.00 0.00 0.00 3.51
2799 4140 6.000840 TGTGTGTATTGCTAAGAAATGGACA 58.999 36.000 0.00 0.00 0.00 4.02
2800 4141 6.494893 TGTGTGTATTGCTAAGAAATGGAC 57.505 37.500 0.00 0.00 0.00 4.02
2879 4220 6.677781 TTTGTAGTTTGTGAAGGAGAGTTG 57.322 37.500 0.00 0.00 0.00 3.16
2994 4335 6.826231 TGTTGACTGAAGAGAACAAACCATTA 59.174 34.615 0.00 0.00 0.00 1.90
3014 4355 2.783135 GTCCAATCAAGGAGCTGTTGA 58.217 47.619 9.90 9.90 38.64 3.18
3030 4371 1.029681 CGACGAGGATGTATGGTCCA 58.970 55.000 0.00 0.00 38.25 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.