Multiple sequence alignment - TraesCS2A01G026400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G026400 chr2A 100.000 6008 0 0 1 6008 12226364 12220357 0.000000e+00 11095.0
1 TraesCS2A01G026400 chr2A 87.235 2076 248 12 2747 4811 12202009 12199940 0.000000e+00 2350.0
2 TraesCS2A01G026400 chr2A 74.326 2115 440 78 2760 4819 12181181 12179115 0.000000e+00 802.0
3 TraesCS2A01G026400 chr2A 83.528 771 121 6 970 1737 12171849 12171082 0.000000e+00 715.0
4 TraesCS2A01G026400 chr2A 86.869 99 4 6 5743 5836 72938121 72938027 1.070000e-17 102.0
5 TraesCS2A01G026400 chr2B 87.687 3070 279 33 1955 4994 18093568 18090568 0.000000e+00 3483.0
6 TraesCS2A01G026400 chr2B 83.490 2235 299 30 2849 5060 18124892 18122705 0.000000e+00 2019.0
7 TraesCS2A01G026400 chr2B 92.117 1129 80 8 793 1916 18094692 18093568 0.000000e+00 1583.0
8 TraesCS2A01G026400 chr2B 78.234 2141 360 74 2757 4819 17568976 17571088 0.000000e+00 1275.0
9 TraesCS2A01G026400 chr2B 84.510 1246 173 13 3759 4994 18069073 18067838 0.000000e+00 1214.0
10 TraesCS2A01G026400 chr2B 89.774 929 61 19 5090 6008 18090487 18089583 0.000000e+00 1158.0
11 TraesCS2A01G026400 chr2B 85.657 1004 131 11 2765 3762 18072628 18071632 0.000000e+00 1044.0
12 TraesCS2A01G026400 chr2B 86.318 804 108 2 939 1741 18128051 18127249 0.000000e+00 874.0
13 TraesCS2A01G026400 chr2B 74.975 2010 408 66 2757 4716 17928338 17926374 0.000000e+00 837.0
14 TraesCS2A01G026400 chr2B 82.110 872 145 9 876 1743 17931014 17930150 0.000000e+00 736.0
15 TraesCS2A01G026400 chr2B 82.097 849 138 14 897 1742 17564201 17565038 0.000000e+00 713.0
16 TraesCS2A01G026400 chr2B 81.296 818 140 11 928 1738 17939334 17938523 0.000000e+00 651.0
17 TraesCS2A01G026400 chr2B 81.288 823 131 16 928 1738 18142786 18141975 0.000000e+00 645.0
18 TraesCS2A01G026400 chr2B 84.436 559 58 8 2328 2875 18073267 18072727 1.920000e-144 523.0
19 TraesCS2A01G026400 chr2B 82.986 623 58 26 5079 5680 18042633 18042038 2.480000e-143 520.0
20 TraesCS2A01G026400 chr2B 81.699 612 68 26 5425 6008 18122332 18121737 2.540000e-128 470.0
21 TraesCS2A01G026400 chr2B 78.144 819 98 46 120 895 18100139 18099359 4.270000e-121 446.0
22 TraesCS2A01G026400 chr2B 80.488 410 57 12 14 402 18095508 18095101 5.890000e-75 292.0
23 TraesCS2A01G026400 chr2B 83.601 311 26 10 458 745 18094997 18094689 9.930000e-68 268.0
24 TraesCS2A01G026400 chr2B 82.569 327 32 14 5077 5398 18122719 18122413 1.280000e-66 265.0
25 TraesCS2A01G026400 chr2B 82.927 287 33 6 5727 6007 18042044 18041768 1.670000e-60 244.0
26 TraesCS2A01G026400 chr2B 81.818 121 18 3 174 292 18094804 18094686 1.380000e-16 99.0
27 TraesCS2A01G026400 chr2B 95.000 40 2 0 9 48 689240132 689240093 5.030000e-06 63.9
28 TraesCS2A01G026400 chr2B 95.000 40 2 0 9 48 689257049 689257010 5.030000e-06 63.9
29 TraesCS2A01G026400 chr2D 87.393 2221 238 22 2875 5060 11578084 11575871 0.000000e+00 2512.0
30 TraesCS2A01G026400 chr2D 92.202 872 38 13 5077 5922 11575885 11575018 0.000000e+00 1206.0
31 TraesCS2A01G026400 chr2D 86.605 866 112 4 878 1741 11581210 11580347 0.000000e+00 953.0
32 TraesCS2A01G026400 chr2D 85.921 760 103 4 984 1741 11555109 11554352 0.000000e+00 808.0
33 TraesCS2A01G026400 chr2D 74.245 2120 433 82 2757 4820 11552561 11550499 0.000000e+00 785.0
34 TraesCS2A01G026400 chr2D 81.074 819 140 11 928 1738 11613695 11612884 1.830000e-179 640.0
35 TraesCS2A01G026400 chr2D 71.402 1063 243 41 3698 4716 2260619 2261664 7.840000e-54 222.0
36 TraesCS2A01G026400 chr2D 82.517 143 11 10 5701 5836 2262415 2262550 4.920000e-21 113.0
37 TraesCS2A01G026400 chrUn 85.906 2157 273 23 2859 4990 230602357 230604507 0.000000e+00 2270.0
38 TraesCS2A01G026400 chrUn 81.441 2387 351 57 2872 5186 1981161 1978795 0.000000e+00 1869.0
39 TraesCS2A01G026400 chrUn 86.226 530 37 20 5076 5599 230604583 230605082 5.300000e-150 542.0
40 TraesCS2A01G026400 chrUn 82.392 602 65 24 5436 6008 1978399 1977810 2.520000e-133 486.0
41 TraesCS2A01G026400 chrUn 79.655 580 79 23 5450 6007 2055139 2054577 1.220000e-101 381.0
42 TraesCS2A01G026400 chrUn 93.000 100 4 2 5596 5692 230605413 230605512 6.280000e-30 143.0
43 TraesCS2A01G026400 chrUn 93.617 47 3 0 5014 5060 2055218 2055172 3.000000e-08 71.3
44 TraesCS2A01G026400 chrUn 94.444 36 2 0 15 50 76567336 76567371 8.410000e-04 56.5
45 TraesCS2A01G026400 chr1A 76.228 2015 403 47 2845 4819 462393265 462395243 0.000000e+00 998.0
46 TraesCS2A01G026400 chr1B 75.956 2013 409 51 2845 4819 486480430 486482405 0.000000e+00 966.0
47 TraesCS2A01G026400 chr1B 97.143 35 1 0 14 48 429700144 429700110 6.500000e-05 60.2
48 TraesCS2A01G026400 chr1D 84.182 746 110 8 1001 1742 363120393 363121134 0.000000e+00 717.0
49 TraesCS2A01G026400 chr1D 100.000 34 0 0 14 47 317590801 317590768 5.030000e-06 63.9
50 TraesCS2A01G026400 chr7A 80.888 811 137 16 944 1743 32022340 32021537 1.840000e-174 623.0
51 TraesCS2A01G026400 chr6A 84.956 113 6 8 5730 5836 4707884 4707777 2.960000e-18 104.0
52 TraesCS2A01G026400 chr3B 94.444 36 2 0 15 50 570443183 570443148 8.410000e-04 56.5
53 TraesCS2A01G026400 chr6B 100.000 28 0 0 15 42 42115864 42115837 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G026400 chr2A 12220357 12226364 6007 True 11095.00 11095 100.000000 1 6008 1 chr2A.!!$R4 6007
1 TraesCS2A01G026400 chr2A 12199940 12202009 2069 True 2350.00 2350 87.235000 2747 4811 1 chr2A.!!$R3 2064
2 TraesCS2A01G026400 chr2A 12179115 12181181 2066 True 802.00 802 74.326000 2760 4819 1 chr2A.!!$R2 2059
3 TraesCS2A01G026400 chr2A 12171082 12171849 767 True 715.00 715 83.528000 970 1737 1 chr2A.!!$R1 767
4 TraesCS2A01G026400 chr2B 18089583 18100139 10556 True 1047.00 3483 84.804143 14 6008 7 chr2B.!!$R8 5994
5 TraesCS2A01G026400 chr2B 17564201 17571088 6887 False 994.00 1275 80.165500 897 4819 2 chr2B.!!$F1 3922
6 TraesCS2A01G026400 chr2B 18067838 18073267 5429 True 927.00 1214 84.867667 2328 4994 3 chr2B.!!$R7 2666
7 TraesCS2A01G026400 chr2B 18121737 18128051 6314 True 907.00 2019 83.519000 939 6008 4 chr2B.!!$R9 5069
8 TraesCS2A01G026400 chr2B 17926374 17931014 4640 True 786.50 837 78.542500 876 4716 2 chr2B.!!$R5 3840
9 TraesCS2A01G026400 chr2B 17938523 17939334 811 True 651.00 651 81.296000 928 1738 1 chr2B.!!$R1 810
10 TraesCS2A01G026400 chr2B 18141975 18142786 811 True 645.00 645 81.288000 928 1738 1 chr2B.!!$R2 810
11 TraesCS2A01G026400 chr2B 18041768 18042633 865 True 382.00 520 82.956500 5079 6007 2 chr2B.!!$R6 928
12 TraesCS2A01G026400 chr2D 11575018 11581210 6192 True 1557.00 2512 88.733333 878 5922 3 chr2D.!!$R3 5044
13 TraesCS2A01G026400 chr2D 11550499 11555109 4610 True 796.50 808 80.083000 984 4820 2 chr2D.!!$R2 3836
14 TraesCS2A01G026400 chr2D 11612884 11613695 811 True 640.00 640 81.074000 928 1738 1 chr2D.!!$R1 810
15 TraesCS2A01G026400 chrUn 1977810 1981161 3351 True 1177.50 1869 81.916500 2872 6008 2 chrUn.!!$R1 3136
16 TraesCS2A01G026400 chrUn 230602357 230605512 3155 False 985.00 2270 88.377333 2859 5692 3 chrUn.!!$F2 2833
17 TraesCS2A01G026400 chrUn 2054577 2055218 641 True 226.15 381 86.636000 5014 6007 2 chrUn.!!$R2 993
18 TraesCS2A01G026400 chr1A 462393265 462395243 1978 False 998.00 998 76.228000 2845 4819 1 chr1A.!!$F1 1974
19 TraesCS2A01G026400 chr1B 486480430 486482405 1975 False 966.00 966 75.956000 2845 4819 1 chr1B.!!$F1 1974
20 TraesCS2A01G026400 chr1D 363120393 363121134 741 False 717.00 717 84.182000 1001 1742 1 chr1D.!!$F1 741
21 TraesCS2A01G026400 chr7A 32021537 32022340 803 True 623.00 623 80.888000 944 1743 1 chr7A.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
705 5413 0.034089 AGACAGCCCATGTTAAGCCC 60.034 55.0 0.00 0.0 44.17 5.19 F
763 5471 0.243365 TGCCATGTTCATTCAACGCC 59.757 50.0 0.00 0.0 37.90 5.68 F
814 5522 0.321210 TCACCACATGTTACAGGGCG 60.321 55.0 1.27 0.0 0.00 6.13 F
836 5544 0.456142 CGCCGACGACTTTGAGATGA 60.456 55.0 0.00 0.0 43.93 2.92 F
1108 5820 0.456221 GGAAGGCGTCGAATCTCTCA 59.544 55.0 0.00 0.0 0.00 3.27 F
1858 6570 0.541063 TCTGGCGGACAAGAGGTACA 60.541 55.0 0.00 0.0 0.00 2.90 F
1952 6714 0.550914 ACTCCCACAGTTCCAAGCAA 59.449 50.0 0.00 0.0 26.56 3.91 F
2721 12027 0.611200 ATCCGTCGGTTGGTTCATCA 59.389 50.0 11.88 0.0 0.00 3.07 F
4149 16654 0.037975 GCATTGTGCAAGAGTTGGGG 60.038 55.0 0.00 0.0 44.26 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1941 6703 0.550914 TCACCCAGTTGCTTGGAACT 59.449 50.000 1.68 1.68 40.87 3.01 R
2220 7876 1.630369 AGTGGCATCCTACTCAAAGCA 59.370 47.619 0.00 0.00 0.00 3.91 R
2290 8743 2.797156 CAGCTATAGTGGTGCTAAAGCG 59.203 50.000 0.84 0.00 45.83 4.68 R
2331 8784 4.879545 AGTTGTTGTGATCGGTGTTTAGTT 59.120 37.500 0.00 0.00 0.00 2.24 R
2721 12027 5.179452 AGCAATACACCACATAAAGGAGT 57.821 39.130 0.00 0.00 34.31 3.85 R
3546 13450 1.066858 CGACAACCATGTACAGAGCCT 60.067 52.381 0.33 0.00 40.74 4.58 R
3848 16326 1.564348 GGTTGAGATGGCCCTCCTTAA 59.436 52.381 0.00 0.00 32.32 1.85 R
4624 17184 0.675522 ACCCGCAAACCGATTTCGAT 60.676 50.000 0.67 0.00 43.02 3.59 R
5717 18990 0.251165 CCTCAAAATCCACCCACCGT 60.251 55.000 0.00 0.00 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 4748 9.219603 TCAAATTGAAGAAGGTTGACATAGTAG 57.780 33.333 0.00 0.00 0.00 2.57
137 4756 9.930693 AAGAAGGTTGACATAGTAGAAACTTAG 57.069 33.333 0.00 0.00 37.15 2.18
142 4761 9.738832 GGTTGACATAGTAGAAACTTAGATCTC 57.261 37.037 0.00 0.00 37.15 2.75
161 4780 8.887264 AGATCTCTTAGAGTACTTTGAAAGGA 57.113 34.615 10.02 0.00 0.00 3.36
162 4781 8.966868 AGATCTCTTAGAGTACTTTGAAAGGAG 58.033 37.037 10.02 3.91 0.00 3.69
164 4783 7.011382 TCTCTTAGAGTACTTTGAAAGGAGGT 58.989 38.462 10.02 0.00 0.00 3.85
165 4784 8.168725 TCTCTTAGAGTACTTTGAAAGGAGGTA 58.831 37.037 10.02 0.00 0.00 3.08
166 4785 8.350852 TCTTAGAGTACTTTGAAAGGAGGTAG 57.649 38.462 10.02 0.00 0.00 3.18
168 4787 6.997942 AGAGTACTTTGAAAGGAGGTAGTT 57.002 37.500 10.02 0.00 0.00 2.24
169 4788 7.376335 AGAGTACTTTGAAAGGAGGTAGTTT 57.624 36.000 10.02 0.00 0.00 2.66
170 4789 7.217906 AGAGTACTTTGAAAGGAGGTAGTTTG 58.782 38.462 10.02 0.00 0.00 2.93
171 4790 6.896883 AGTACTTTGAAAGGAGGTAGTTTGT 58.103 36.000 10.02 0.00 0.00 2.83
172 4791 6.990939 AGTACTTTGAAAGGAGGTAGTTTGTC 59.009 38.462 10.02 0.00 0.00 3.18
173 4792 5.131067 ACTTTGAAAGGAGGTAGTTTGTCC 58.869 41.667 10.02 0.00 0.00 4.02
194 4832 0.250553 TTGCCCCTAACCAAGTCGTG 60.251 55.000 0.00 0.00 0.00 4.35
234 4872 6.910536 ACAGAAGTTTTGTACAAGAGACAG 57.089 37.500 8.56 1.05 0.00 3.51
235 4873 5.294552 ACAGAAGTTTTGTACAAGAGACAGC 59.705 40.000 8.56 5.86 0.00 4.40
236 4874 4.508124 AGAAGTTTTGTACAAGAGACAGCG 59.492 41.667 8.56 0.00 0.00 5.18
237 4875 4.054780 AGTTTTGTACAAGAGACAGCGA 57.945 40.909 8.56 0.00 0.00 4.93
238 4876 4.439057 AGTTTTGTACAAGAGACAGCGAA 58.561 39.130 8.56 0.00 0.00 4.70
241 4879 3.660501 TGTACAAGAGACAGCGAACAT 57.339 42.857 0.00 0.00 0.00 2.71
252 4890 0.250467 AGCGAACATGTTCAGCCAGT 60.250 50.000 32.39 21.14 39.46 4.00
259 4897 4.019792 ACATGTTCAGCCAGTGTTGATA 57.980 40.909 0.00 0.00 31.34 2.15
260 4898 4.592942 ACATGTTCAGCCAGTGTTGATAT 58.407 39.130 0.00 0.00 31.34 1.63
264 4902 5.125356 TGTTCAGCCAGTGTTGATATATGG 58.875 41.667 0.00 0.00 31.34 2.74
268 4906 5.073554 TCAGCCAGTGTTGATATATGGGATT 59.926 40.000 0.00 0.00 0.00 3.01
270 4908 6.942005 CAGCCAGTGTTGATATATGGGATTAA 59.058 38.462 0.00 0.00 0.00 1.40
278 4917 9.964354 TGTTGATATATGGGATTAAGGAATCAG 57.036 33.333 0.00 0.00 42.95 2.90
283 4922 3.620488 TGGGATTAAGGAATCAGTGCAC 58.380 45.455 9.40 9.40 42.95 4.57
301 4940 2.093310 GCACGTCATGACATGTTCTGAG 59.907 50.000 24.93 8.19 0.00 3.35
302 4941 3.578688 CACGTCATGACATGTTCTGAGA 58.421 45.455 24.93 0.00 0.00 3.27
305 4944 2.935201 GTCATGACATGTTCTGAGAGCC 59.065 50.000 21.07 0.00 0.00 4.70
307 4946 3.262660 TCATGACATGTTCTGAGAGCCTT 59.737 43.478 14.98 0.00 0.00 4.35
316 4955 0.673022 CTGAGAGCCTTGGTCTGTGC 60.673 60.000 0.00 0.00 40.67 4.57
319 4958 1.078848 GAGCCTTGGTCTGTGCGAT 60.079 57.895 0.00 0.00 0.00 4.58
330 4969 4.280929 TGGTCTGTGCGATTGTATATAGCT 59.719 41.667 0.00 0.00 0.00 3.32
331 4970 5.475564 TGGTCTGTGCGATTGTATATAGCTA 59.524 40.000 0.00 0.00 0.00 3.32
356 4995 3.546002 TTACAATTGCACGTTACTGGC 57.454 42.857 5.05 0.00 0.00 4.85
380 5047 1.826385 CCTTAGGCCACCACTTTGAG 58.174 55.000 5.01 0.00 0.00 3.02
386 5053 0.961019 GCCACCACTTTGAGATGCAA 59.039 50.000 0.00 0.00 33.88 4.08
388 5055 2.863704 GCCACCACTTTGAGATGCAAAC 60.864 50.000 0.00 0.00 41.37 2.93
389 5056 2.624838 CCACCACTTTGAGATGCAAACT 59.375 45.455 0.00 0.00 41.37 2.66
405 5072 6.005583 TGCAAACTCAAGCATTCTAGAAAG 57.994 37.500 9.71 6.28 35.51 2.62
435 5103 4.525912 AGTCCATGATTTTGAACTTGCC 57.474 40.909 0.00 0.00 0.00 4.52
436 5104 3.057315 AGTCCATGATTTTGAACTTGCCG 60.057 43.478 0.00 0.00 0.00 5.69
437 5105 2.230992 TCCATGATTTTGAACTTGCCGG 59.769 45.455 0.00 0.00 0.00 6.13
438 5106 1.994779 CATGATTTTGAACTTGCCGGC 59.005 47.619 22.73 22.73 0.00 6.13
439 5107 0.316841 TGATTTTGAACTTGCCGGCC 59.683 50.000 26.77 8.57 0.00 6.13
441 5109 2.153547 ATTTTGAACTTGCCGGCCGG 62.154 55.000 40.26 40.26 38.57 6.13
451 5119 3.158648 CCGGCCGGATGGGTTCTA 61.159 66.667 41.82 0.00 38.44 2.10
452 5120 2.516888 CCGGCCGGATGGGTTCTAT 61.517 63.158 41.82 0.00 38.44 1.98
455 5123 1.053424 GGCCGGATGGGTTCTATACA 58.947 55.000 5.05 0.00 38.44 2.29
456 5124 1.002087 GGCCGGATGGGTTCTATACAG 59.998 57.143 5.05 0.00 38.44 2.74
476 5163 3.095421 CCACCCTATGGCACCCAA 58.905 61.111 0.00 0.00 43.24 4.12
517 5204 1.084370 CGGAAGTTCTGCCCGATGAC 61.084 60.000 2.25 0.00 45.58 3.06
555 5242 6.205270 TGGAGGAGTAAACGTGGAATTTTTAC 59.795 38.462 0.00 0.00 36.40 2.01
556 5243 6.348786 GGAGGAGTAAACGTGGAATTTTTACC 60.349 42.308 0.00 0.00 36.69 2.85
557 5244 5.179929 AGGAGTAAACGTGGAATTTTTACCG 59.820 40.000 0.00 0.00 36.69 4.02
560 5247 3.902261 AACGTGGAATTTTTACCGGAC 57.098 42.857 9.46 0.00 0.00 4.79
562 5249 3.212685 ACGTGGAATTTTTACCGGACAA 58.787 40.909 9.46 0.00 0.00 3.18
567 5260 6.348704 CGTGGAATTTTTACCGGACAATAACT 60.349 38.462 9.46 0.00 0.00 2.24
568 5261 6.804783 GTGGAATTTTTACCGGACAATAACTG 59.195 38.462 9.46 0.00 0.00 3.16
573 5266 4.620589 TTACCGGACAATAACTGGTTCA 57.379 40.909 9.46 0.00 43.52 3.18
576 5269 4.403734 ACCGGACAATAACTGGTTCAAAT 58.596 39.130 9.46 0.00 43.52 2.32
577 5270 5.562635 ACCGGACAATAACTGGTTCAAATA 58.437 37.500 9.46 0.00 43.52 1.40
606 5299 7.623268 TTGATTTGATCATATCGTGTACTCG 57.377 36.000 17.80 10.97 39.39 4.18
607 5300 6.735130 TGATTTGATCATATCGTGTACTCGT 58.265 36.000 17.80 7.29 33.59 4.18
608 5301 7.200455 TGATTTGATCATATCGTGTACTCGTT 58.800 34.615 17.80 11.00 33.59 3.85
609 5302 7.378728 TGATTTGATCATATCGTGTACTCGTTC 59.621 37.037 17.80 6.69 33.59 3.95
610 5303 4.769215 TGATCATATCGTGTACTCGTTCG 58.231 43.478 16.12 4.77 0.00 3.95
611 5304 3.597377 TCATATCGTGTACTCGTTCGG 57.403 47.619 16.12 6.41 0.00 4.30
613 5306 2.811902 TATCGTGTACTCGTTCGGTG 57.188 50.000 16.12 0.00 0.00 4.94
614 5307 0.877071 ATCGTGTACTCGTTCGGTGT 59.123 50.000 16.12 0.00 0.00 4.16
615 5308 0.662619 TCGTGTACTCGTTCGGTGTT 59.337 50.000 16.12 0.00 0.00 3.32
617 5310 1.047739 GTGTACTCGTTCGGTGTTCG 58.952 55.000 0.00 0.00 40.90 3.95
618 5311 0.661187 TGTACTCGTTCGGTGTTCGC 60.661 55.000 0.00 0.00 39.05 4.70
620 5313 1.135972 GTACTCGTTCGGTGTTCGCTA 60.136 52.381 0.00 0.00 39.05 4.26
621 5314 0.524862 ACTCGTTCGGTGTTCGCTAT 59.475 50.000 0.00 0.00 39.05 2.97
623 5316 0.241749 TCGTTCGGTGTTCGCTATGT 59.758 50.000 0.00 0.00 39.05 2.29
624 5317 1.468127 TCGTTCGGTGTTCGCTATGTA 59.532 47.619 0.00 0.00 39.05 2.29
625 5318 2.097954 TCGTTCGGTGTTCGCTATGTAT 59.902 45.455 0.00 0.00 39.05 2.29
626 5319 2.215587 CGTTCGGTGTTCGCTATGTATG 59.784 50.000 0.00 0.00 39.05 2.39
627 5320 2.502213 TCGGTGTTCGCTATGTATGG 57.498 50.000 0.00 0.00 39.05 2.74
628 5321 0.859232 CGGTGTTCGCTATGTATGGC 59.141 55.000 0.00 0.00 0.00 4.40
629 5322 1.538204 CGGTGTTCGCTATGTATGGCT 60.538 52.381 0.00 0.00 31.46 4.75
665 5373 7.889469 ACCAAGTCGTACTCTTCTACATTAAA 58.111 34.615 0.00 0.00 0.00 1.52
691 5399 5.749109 ACAGAAGTTTTGTACGAAGAGACAG 59.251 40.000 0.00 0.00 0.00 3.51
705 5413 0.034089 AGACAGCCCATGTTAAGCCC 60.034 55.000 0.00 0.00 44.17 5.19
708 5416 2.440247 GCCCATGTTAAGCCCGCT 60.440 61.111 0.00 0.00 0.00 5.52
719 5427 2.717639 AAGCCCGCTCTAATCAATGT 57.282 45.000 0.00 0.00 0.00 2.71
745 5453 4.621068 ACAGGAATCAATGCACGTTATG 57.379 40.909 0.00 0.00 0.00 1.90
758 5466 4.354071 CACGTTATGCCATGTTCATTCA 57.646 40.909 3.47 0.00 0.00 2.57
759 5467 4.731720 CACGTTATGCCATGTTCATTCAA 58.268 39.130 3.47 0.00 0.00 2.69
760 5468 4.558470 CACGTTATGCCATGTTCATTCAAC 59.442 41.667 3.47 3.15 35.28 3.18
762 5470 2.282701 ATGCCATGTTCATTCAACGC 57.717 45.000 0.00 0.00 37.90 4.84
763 5471 0.243365 TGCCATGTTCATTCAACGCC 59.757 50.000 0.00 0.00 37.90 5.68
764 5472 0.527565 GCCATGTTCATTCAACGCCT 59.472 50.000 0.00 0.00 37.90 5.52
765 5473 1.742831 GCCATGTTCATTCAACGCCTA 59.257 47.619 0.00 0.00 37.90 3.93
766 5474 2.223340 GCCATGTTCATTCAACGCCTAG 60.223 50.000 0.00 0.00 37.90 3.02
767 5475 3.270027 CCATGTTCATTCAACGCCTAGA 58.730 45.455 0.00 0.00 37.90 2.43
768 5476 3.879295 CCATGTTCATTCAACGCCTAGAT 59.121 43.478 0.00 0.00 37.90 1.98
769 5477 4.024556 CCATGTTCATTCAACGCCTAGATC 60.025 45.833 0.00 0.00 37.90 2.75
770 5478 4.200838 TGTTCATTCAACGCCTAGATCA 57.799 40.909 0.00 0.00 37.90 2.92
771 5479 4.183865 TGTTCATTCAACGCCTAGATCAG 58.816 43.478 0.00 0.00 37.90 2.90
772 5480 4.184629 GTTCATTCAACGCCTAGATCAGT 58.815 43.478 0.00 0.00 0.00 3.41
773 5481 4.471904 TCATTCAACGCCTAGATCAGTT 57.528 40.909 0.00 0.00 0.00 3.16
774 5482 4.832248 TCATTCAACGCCTAGATCAGTTT 58.168 39.130 0.00 0.00 0.00 2.66
775 5483 4.631377 TCATTCAACGCCTAGATCAGTTTG 59.369 41.667 0.00 0.00 0.00 2.93
776 5484 3.953712 TCAACGCCTAGATCAGTTTGA 57.046 42.857 0.00 0.00 0.00 2.69
777 5485 4.471904 TCAACGCCTAGATCAGTTTGAT 57.528 40.909 0.00 0.00 40.34 2.57
778 5486 4.832248 TCAACGCCTAGATCAGTTTGATT 58.168 39.130 0.00 0.00 37.20 2.57
779 5487 4.631377 TCAACGCCTAGATCAGTTTGATTG 59.369 41.667 0.00 0.00 37.20 2.67
780 5488 4.207891 ACGCCTAGATCAGTTTGATTGT 57.792 40.909 0.00 0.00 37.20 2.71
781 5489 5.339008 ACGCCTAGATCAGTTTGATTGTA 57.661 39.130 0.00 0.00 37.20 2.41
782 5490 5.109903 ACGCCTAGATCAGTTTGATTGTAC 58.890 41.667 0.00 0.00 37.20 2.90
783 5491 5.109210 CGCCTAGATCAGTTTGATTGTACA 58.891 41.667 0.00 0.00 37.20 2.90
784 5492 5.580691 CGCCTAGATCAGTTTGATTGTACAA 59.419 40.000 11.41 11.41 37.20 2.41
785 5493 6.237942 CGCCTAGATCAGTTTGATTGTACAAG 60.238 42.308 14.65 0.00 37.20 3.16
786 5494 6.595716 GCCTAGATCAGTTTGATTGTACAAGT 59.404 38.462 14.65 2.50 37.20 3.16
787 5495 7.413438 GCCTAGATCAGTTTGATTGTACAAGTG 60.413 40.741 14.65 3.82 37.20 3.16
788 5496 7.819415 CCTAGATCAGTTTGATTGTACAAGTGA 59.181 37.037 14.65 9.23 37.20 3.41
789 5497 9.208022 CTAGATCAGTTTGATTGTACAAGTGAA 57.792 33.333 14.65 5.46 37.20 3.18
790 5498 8.627208 AGATCAGTTTGATTGTACAAGTGAAT 57.373 30.769 14.65 0.00 37.20 2.57
791 5499 9.725019 AGATCAGTTTGATTGTACAAGTGAATA 57.275 29.630 14.65 0.00 37.20 1.75
811 5519 8.559536 GTGAATATTATCACCACATGTTACAGG 58.440 37.037 0.00 0.00 43.11 4.00
812 5520 7.719193 TGAATATTATCACCACATGTTACAGGG 59.281 37.037 1.27 0.00 0.00 4.45
813 5521 2.128771 ATCACCACATGTTACAGGGC 57.871 50.000 1.27 0.00 0.00 5.19
814 5522 0.321210 TCACCACATGTTACAGGGCG 60.321 55.000 1.27 0.00 0.00 6.13
815 5523 1.674322 ACCACATGTTACAGGGCGC 60.674 57.895 0.00 0.00 0.00 6.53
816 5524 2.406616 CCACATGTTACAGGGCGCC 61.407 63.158 21.18 21.18 0.00 6.53
817 5525 2.045340 ACATGTTACAGGGCGCCC 60.045 61.111 39.29 39.29 0.00 6.13
818 5526 3.202001 CATGTTACAGGGCGCCCG 61.202 66.667 38.88 32.87 41.95 6.13
836 5544 0.456142 CGCCGACGACTTTGAGATGA 60.456 55.000 0.00 0.00 43.93 2.92
842 5550 4.504461 CCGACGACTTTGAGATGATTTAGG 59.496 45.833 0.00 0.00 0.00 2.69
843 5551 5.340803 CGACGACTTTGAGATGATTTAGGA 58.659 41.667 0.00 0.00 0.00 2.94
844 5552 5.457148 CGACGACTTTGAGATGATTTAGGAG 59.543 44.000 0.00 0.00 0.00 3.69
845 5553 6.287589 ACGACTTTGAGATGATTTAGGAGT 57.712 37.500 0.00 0.00 0.00 3.85
846 5554 7.406031 ACGACTTTGAGATGATTTAGGAGTA 57.594 36.000 0.00 0.00 0.00 2.59
847 5555 7.259161 ACGACTTTGAGATGATTTAGGAGTAC 58.741 38.462 0.00 0.00 0.00 2.73
849 5557 7.923344 CGACTTTGAGATGATTTAGGAGTACAT 59.077 37.037 0.00 0.00 0.00 2.29
850 5558 8.954950 ACTTTGAGATGATTTAGGAGTACATG 57.045 34.615 0.00 0.00 0.00 3.21
851 5559 7.497249 ACTTTGAGATGATTTAGGAGTACATGC 59.503 37.037 0.00 0.00 0.00 4.06
852 5560 6.484364 TGAGATGATTTAGGAGTACATGCA 57.516 37.500 0.00 0.00 0.00 3.96
853 5561 7.071069 TGAGATGATTTAGGAGTACATGCAT 57.929 36.000 0.00 0.00 0.00 3.96
895 5603 0.466555 TTGTAAACTTGGCTGGCCGT 60.467 50.000 7.14 0.00 39.42 5.68
897 5605 0.605589 GTAAACTTGGCTGGCCGTCT 60.606 55.000 7.14 0.00 39.42 4.18
937 5645 1.326951 AACCCTGCACACCCAAACAC 61.327 55.000 0.00 0.00 0.00 3.32
1078 5790 1.565305 CGAGGAGTACAATCTGCAGC 58.435 55.000 9.47 0.00 0.00 5.25
1108 5820 0.456221 GGAAGGCGTCGAATCTCTCA 59.544 55.000 0.00 0.00 0.00 3.27
1283 5995 3.072476 GGGTTCTGAGCCTGCAGA 58.928 61.111 17.39 0.00 42.81 4.26
1437 6149 4.565166 ACAATGTACAATGTCGACGGTATG 59.435 41.667 10.85 9.34 0.00 2.39
1554 6266 6.183360 GGGATCAAGAGCTAATGAATTTGCTT 60.183 38.462 12.18 0.00 46.05 3.91
1677 6389 8.697507 ACAAGATTAAAGGAGATTTCAGTTGT 57.302 30.769 0.00 0.00 32.01 3.32
1692 6404 4.904116 TCAGTTGTAGTGCTTTTGTTTCG 58.096 39.130 0.00 0.00 0.00 3.46
1764 6476 5.235616 TGACCGTAATATGAAGAAAATCCGC 59.764 40.000 0.00 0.00 0.00 5.54
1774 6486 4.635765 TGAAGAAAATCCGCGATGATCTTT 59.364 37.500 8.23 6.47 32.07 2.52
1796 6508 9.761504 TCTTTGCATTAATGAAAGTCAATTCAA 57.238 25.926 19.73 6.66 42.22 2.69
1858 6570 0.541063 TCTGGCGGACAAGAGGTACA 60.541 55.000 0.00 0.00 0.00 2.90
1885 6642 6.208797 ACATATCATCTCTTGCCCATGATTTG 59.791 38.462 0.00 8.93 39.73 2.32
1940 6702 9.754382 TTAATATGATTACGAAGTTACTCCCAC 57.246 33.333 0.00 0.00 37.78 4.61
1941 6703 5.670792 ATGATTACGAAGTTACTCCCACA 57.329 39.130 0.00 0.00 37.78 4.17
1947 6709 2.036733 CGAAGTTACTCCCACAGTTCCA 59.963 50.000 0.00 0.00 36.43 3.53
1949 6711 3.771577 AGTTACTCCCACAGTTCCAAG 57.228 47.619 0.00 0.00 36.43 3.61
1952 6714 0.550914 ACTCCCACAGTTCCAAGCAA 59.449 50.000 0.00 0.00 26.56 3.91
1953 6715 0.954452 CTCCCACAGTTCCAAGCAAC 59.046 55.000 0.00 0.00 0.00 4.17
2154 7810 6.620877 AGTATTTTCTACCAGGTCATGTGA 57.379 37.500 0.00 0.00 0.00 3.58
2202 7858 4.718940 AACCAAAGATTTGAATAGCGGG 57.281 40.909 6.87 0.00 40.55 6.13
2203 7859 3.963129 ACCAAAGATTTGAATAGCGGGA 58.037 40.909 6.87 0.00 40.55 5.14
2215 7871 4.772624 TGAATAGCGGGATATAGCTCAACT 59.227 41.667 0.00 0.00 43.44 3.16
2219 7875 3.895656 AGCGGGATATAGCTCAACTACAA 59.104 43.478 0.00 0.00 39.98 2.41
2220 7876 4.528596 AGCGGGATATAGCTCAACTACAAT 59.471 41.667 0.00 0.00 39.98 2.71
2222 7878 4.627467 CGGGATATAGCTCAACTACAATGC 59.373 45.833 0.00 0.00 32.32 3.56
2238 7894 3.018856 CAATGCTTTGAGTAGGATGCCA 58.981 45.455 6.48 0.00 34.60 4.92
2255 7911 5.105997 GGATGCCACTAAATAGAATCCATGC 60.106 44.000 0.00 0.00 33.73 4.06
2256 7912 4.790937 TGCCACTAAATAGAATCCATGCA 58.209 39.130 0.00 0.00 0.00 3.96
2258 7914 4.580167 GCCACTAAATAGAATCCATGCACA 59.420 41.667 0.00 0.00 0.00 4.57
2290 8743 6.936900 TGCCTGATATAGCTTGATTTAACTCC 59.063 38.462 0.00 0.00 0.00 3.85
2307 8760 3.028850 ACTCCGCTTTAGCACCACTATA 58.971 45.455 2.29 0.00 42.21 1.31
2466 9681 1.068741 CCGGGCCAGAAGTATGTACTC 59.931 57.143 4.39 0.00 34.99 2.59
2467 9682 2.032620 CGGGCCAGAAGTATGTACTCT 58.967 52.381 4.39 0.00 34.99 3.24
2468 9683 2.431057 CGGGCCAGAAGTATGTACTCTT 59.569 50.000 4.39 0.00 34.99 2.85
2471 9686 5.254115 GGGCCAGAAGTATGTACTCTTTTT 58.746 41.667 4.39 0.00 34.99 1.94
2643 10542 9.241919 TCTTTTACCTGAAAATATTGCAGATCA 57.758 29.630 16.23 4.77 36.44 2.92
2721 12027 0.611200 ATCCGTCGGTTGGTTCATCA 59.389 50.000 11.88 0.00 0.00 3.07
2736 12042 4.396166 GGTTCATCACTCCTTTATGTGGTG 59.604 45.833 0.00 0.00 44.16 4.17
2745 12051 5.648092 ACTCCTTTATGTGGTGTATTGCTTC 59.352 40.000 0.00 0.00 30.61 3.86
2923 12823 5.547465 TCGTAATTGATGACATATGGGACC 58.453 41.667 7.80 0.00 0.00 4.46
2938 12838 0.958822 GGACCCAACATTGTGGACAC 59.041 55.000 0.44 0.00 41.65 3.67
3096 12996 4.853924 TGATTCCAAAAGGCTGTTCTTC 57.146 40.909 0.00 0.00 0.00 2.87
3230 13130 4.137543 ACTTTGGCTAGTGGTCAGAAAAG 58.862 43.478 0.00 0.00 0.00 2.27
3344 13245 9.080097 ACTATCATTTAGCTATTACGACCTTCT 57.920 33.333 0.00 0.00 0.00 2.85
3350 13251 3.315749 AGCTATTACGACCTTCTTCCTCG 59.684 47.826 0.00 0.00 0.00 4.63
3396 13297 3.199880 AGCATGTTTCCGGAAGATAGG 57.800 47.619 17.97 10.43 0.00 2.57
3398 13299 2.421529 GCATGTTTCCGGAAGATAGGGT 60.422 50.000 17.97 0.00 0.00 4.34
3402 13303 4.291792 TGTTTCCGGAAGATAGGGTGATA 58.708 43.478 17.97 0.00 0.00 2.15
3472 13373 6.458210 CCATGTGGAAAAGCAAATTCTAGTT 58.542 36.000 0.00 0.00 37.39 2.24
3532 13433 1.167851 CAAAAGCTTGATCCAGCCGA 58.832 50.000 14.83 0.00 41.12 5.54
3533 13434 1.135575 CAAAAGCTTGATCCAGCCGAC 60.136 52.381 14.83 0.00 41.12 4.79
3546 13450 5.482163 TCCAGCCGACATATGATGAATTA 57.518 39.130 10.38 0.00 0.00 1.40
3560 13464 5.614308 TGATGAATTAGGCTCTGTACATGG 58.386 41.667 0.00 0.00 0.00 3.66
3745 13649 6.126332 ACCTCTGAGATGTGAGAGTATAGGAA 60.126 42.308 6.17 0.00 34.94 3.36
3955 16445 0.735471 GCCCGAAGAGATTGGAAAGC 59.265 55.000 0.00 0.00 33.93 3.51
3990 16480 2.627699 GGTGTTGATTTTTCCTGGCTCA 59.372 45.455 0.00 0.00 0.00 4.26
4069 16574 1.213926 GTGGGAGGCTTCATCTTCCAT 59.786 52.381 0.00 0.00 41.56 3.41
4149 16654 0.037975 GCATTGTGCAAGAGTTGGGG 60.038 55.000 0.00 0.00 44.26 4.96
4276 16793 1.072159 AGTGCCAACTGTGAGCCTC 59.928 57.895 0.50 0.00 34.48 4.70
4309 16835 0.996762 TCTGTTGGGGGAAGGTTGGT 60.997 55.000 0.00 0.00 0.00 3.67
4412 16962 4.997395 TCTGTCACAACTCTCCAAATTAGC 59.003 41.667 0.00 0.00 0.00 3.09
4414 16964 4.515191 TGTCACAACTCTCCAAATTAGCAC 59.485 41.667 0.00 0.00 0.00 4.40
4559 17119 4.692228 TGTTTGGAAAATGTCTTCTTGGC 58.308 39.130 0.00 0.00 0.00 4.52
4624 17184 1.339631 CCAAGGCCGATCAAGTTACCA 60.340 52.381 0.00 0.00 0.00 3.25
4705 17274 0.107508 CATGGGCATCGAGAACCTGT 60.108 55.000 0.00 0.00 0.00 4.00
4716 17285 1.737008 GAACCTGTCGTCCCTTCGC 60.737 63.158 0.00 0.00 0.00 4.70
4720 17289 3.220999 CTGTCGTCCCTTCGCCACA 62.221 63.158 0.00 0.00 0.00 4.17
4752 17321 2.651361 CGCCGTTCTGGAGTGACT 59.349 61.111 0.00 0.00 42.00 3.41
4824 17396 1.921869 ATCCTAACCGCCCCACCTTG 61.922 60.000 0.00 0.00 0.00 3.61
4825 17397 2.598787 CCTAACCGCCCCACCTTGA 61.599 63.158 0.00 0.00 0.00 3.02
4827 17399 0.250989 CTAACCGCCCCACCTTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
4831 17414 0.611896 CCGCCCCACCTTGAAAATCT 60.612 55.000 0.00 0.00 0.00 2.40
4833 17416 2.654863 CGCCCCACCTTGAAAATCTAT 58.345 47.619 0.00 0.00 0.00 1.98
4841 17424 5.121768 CCACCTTGAAAATCTATTTCGACGT 59.878 40.000 0.00 0.00 0.00 4.34
4878 17528 0.511221 CGATGCTTGTCGTTTCCGTT 59.489 50.000 0.00 0.00 36.88 4.44
4889 17543 0.323957 GTTTCCGTTCCCTAGTGCCT 59.676 55.000 0.00 0.00 0.00 4.75
4890 17544 1.061546 TTTCCGTTCCCTAGTGCCTT 58.938 50.000 0.00 0.00 0.00 4.35
5042 17733 5.702209 GGTTAGATACAGTTTTGTTTCCCGA 59.298 40.000 0.00 0.00 36.34 5.14
5054 17745 6.836577 TTTGTTTCCCGATGAAATGAAAAC 57.163 33.333 3.86 0.00 44.44 2.43
5055 17746 4.877282 TGTTTCCCGATGAAATGAAAACC 58.123 39.130 3.86 0.00 44.44 3.27
5056 17747 4.342378 TGTTTCCCGATGAAATGAAAACCA 59.658 37.500 3.86 0.00 44.44 3.67
5057 17748 5.011533 TGTTTCCCGATGAAATGAAAACCAT 59.988 36.000 3.86 0.00 44.44 3.55
5058 17749 5.736951 TTCCCGATGAAATGAAAACCATT 57.263 34.783 0.00 0.00 46.86 3.16
5065 17756 2.760634 AATGAAAACCATTTCCCCGC 57.239 45.000 0.00 0.00 42.55 6.13
5066 17757 1.638529 ATGAAAACCATTTCCCCGCA 58.361 45.000 0.00 0.00 43.54 5.69
5067 17758 1.414158 TGAAAACCATTTCCCCGCAA 58.586 45.000 0.00 0.00 43.54 4.85
5068 17759 1.762957 TGAAAACCATTTCCCCGCAAA 59.237 42.857 0.00 0.00 43.54 3.68
5069 17760 2.170607 TGAAAACCATTTCCCCGCAAAA 59.829 40.909 0.00 0.00 43.54 2.44
5070 17761 3.206964 GAAAACCATTTCCCCGCAAAAA 58.793 40.909 0.00 0.00 39.23 1.94
5118 17854 3.084964 CACAAACTGTGTATACGTGCG 57.915 47.619 0.00 0.00 43.08 5.34
5177 17914 2.043227 GCCCTGCTATACCTTCTGACT 58.957 52.381 0.00 0.00 0.00 3.41
5228 18080 0.671472 TGGAGACGCACATCTGCAAG 60.671 55.000 1.93 0.00 43.26 4.01
5260 18112 3.264897 GTATCCACGGCTGCAGCG 61.265 66.667 31.19 26.56 43.26 5.18
5310 18166 2.292828 TTTCTTGGCTCAAAGAGGGG 57.707 50.000 0.00 0.00 37.48 4.79
5404 18326 6.942576 TGAGTTTCTTTCTAGGCTTAAGCAAT 59.057 34.615 27.83 18.03 44.36 3.56
5592 18526 2.858745 TCTTGTGTCCCTTTTAGCCAC 58.141 47.619 0.00 0.00 0.00 5.01
5786 19061 8.188139 GCCTATGCAACTAATTTTAAGCTTACA 58.812 33.333 5.45 0.00 37.47 2.41
5965 19251 7.464273 TGTCATATTCCTAGCAATCATCCATT 58.536 34.615 0.00 0.00 0.00 3.16
5991 19278 6.795144 TTATACAGTTTCGAGGGACCAATA 57.205 37.500 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 4729 8.834749 AAGTTTCTACTATGTCAACCTTCTTC 57.165 34.615 0.00 0.00 33.17 2.87
137 4756 8.194769 CCTCCTTTCAAAGTACTCTAAGAGATC 58.805 40.741 0.00 0.00 33.32 2.75
142 4761 8.124808 ACTACCTCCTTTCAAAGTACTCTAAG 57.875 38.462 0.00 0.00 0.00 2.18
145 4764 6.997942 AACTACCTCCTTTCAAAGTACTCT 57.002 37.500 0.00 0.00 0.00 3.24
146 4765 6.990939 ACAAACTACCTCCTTTCAAAGTACTC 59.009 38.462 0.00 0.00 0.00 2.59
151 4770 5.377478 AGGACAAACTACCTCCTTTCAAAG 58.623 41.667 0.00 0.00 29.41 2.77
159 4778 2.160205 GGCAAAGGACAAACTACCTCC 58.840 52.381 0.00 0.00 35.25 4.30
160 4779 2.160205 GGGCAAAGGACAAACTACCTC 58.840 52.381 0.00 0.00 35.25 3.85
161 4780 1.203013 GGGGCAAAGGACAAACTACCT 60.203 52.381 0.00 0.00 38.23 3.08
162 4781 1.203013 AGGGGCAAAGGACAAACTACC 60.203 52.381 0.00 0.00 0.00 3.18
164 4783 3.499021 GGTTAGGGGCAAAGGACAAACTA 60.499 47.826 0.00 0.00 0.00 2.24
165 4784 2.594131 GTTAGGGGCAAAGGACAAACT 58.406 47.619 0.00 0.00 0.00 2.66
166 4785 1.616865 GGTTAGGGGCAAAGGACAAAC 59.383 52.381 0.00 0.00 0.00 2.93
168 4787 0.854218 TGGTTAGGGGCAAAGGACAA 59.146 50.000 0.00 0.00 0.00 3.18
169 4788 0.854218 TTGGTTAGGGGCAAAGGACA 59.146 50.000 0.00 0.00 0.00 4.02
170 4789 1.203013 ACTTGGTTAGGGGCAAAGGAC 60.203 52.381 0.00 0.00 0.00 3.85
171 4790 1.074889 GACTTGGTTAGGGGCAAAGGA 59.925 52.381 0.00 0.00 0.00 3.36
172 4791 1.545841 GACTTGGTTAGGGGCAAAGG 58.454 55.000 0.00 0.00 0.00 3.11
173 4792 1.165270 CGACTTGGTTAGGGGCAAAG 58.835 55.000 0.00 0.00 0.00 2.77
194 4832 8.989653 AACTTCTGTACTTAATGTAGAAGAGC 57.010 34.615 18.54 0.00 40.91 4.09
234 4872 0.110056 CACTGGCTGAACATGTTCGC 60.110 55.000 30.32 30.32 42.28 4.70
235 4873 1.229428 ACACTGGCTGAACATGTTCG 58.771 50.000 28.55 23.59 42.28 3.95
236 4874 2.618241 TCAACACTGGCTGAACATGTTC 59.382 45.455 28.10 28.10 39.91 3.18
237 4875 2.653726 TCAACACTGGCTGAACATGTT 58.346 42.857 11.78 11.78 33.86 2.71
238 4876 2.346766 TCAACACTGGCTGAACATGT 57.653 45.000 0.00 0.00 0.00 3.21
241 4879 5.125356 CCATATATCAACACTGGCTGAACA 58.875 41.667 0.00 0.00 0.00 3.18
252 4890 9.964354 CTGATTCCTTAATCCCATATATCAACA 57.036 33.333 0.00 0.00 40.78 3.33
259 4897 6.006449 GTGCACTGATTCCTTAATCCCATAT 58.994 40.000 10.32 0.00 40.78 1.78
260 4898 5.376625 GTGCACTGATTCCTTAATCCCATA 58.623 41.667 10.32 0.00 40.78 2.74
264 4902 3.270877 ACGTGCACTGATTCCTTAATCC 58.729 45.455 16.19 0.00 40.78 3.01
268 4906 3.056179 TCATGACGTGCACTGATTCCTTA 60.056 43.478 16.19 0.00 0.00 2.69
270 4908 1.276138 TCATGACGTGCACTGATTCCT 59.724 47.619 16.19 0.00 0.00 3.36
283 4922 2.602211 GCTCTCAGAACATGTCATGACG 59.398 50.000 19.77 10.04 0.00 4.35
301 4940 0.674895 AATCGCACAGACCAAGGCTC 60.675 55.000 0.00 0.00 0.00 4.70
302 4941 0.957395 CAATCGCACAGACCAAGGCT 60.957 55.000 0.00 0.00 0.00 4.58
305 4944 5.119279 GCTATATACAATCGCACAGACCAAG 59.881 44.000 0.00 0.00 0.00 3.61
307 4946 4.280929 AGCTATATACAATCGCACAGACCA 59.719 41.667 0.00 0.00 0.00 4.02
330 4969 7.911205 GCCAGTAACGTGCAATTGTAATATTTA 59.089 33.333 7.40 0.00 0.00 1.40
331 4970 6.750039 GCCAGTAACGTGCAATTGTAATATTT 59.250 34.615 7.40 0.00 0.00 1.40
342 4981 1.599518 CCCTGCCAGTAACGTGCAA 60.600 57.895 0.00 0.00 34.06 4.08
367 5006 0.961019 TTGCATCTCAAAGTGGTGGC 59.039 50.000 0.00 0.00 0.00 5.01
368 5007 2.624838 AGTTTGCATCTCAAAGTGGTGG 59.375 45.455 0.00 0.00 44.36 4.61
369 5008 3.316029 TGAGTTTGCATCTCAAAGTGGTG 59.684 43.478 16.31 0.00 45.62 4.17
372 5011 3.979495 GCTTGAGTTTGCATCTCAAAGTG 59.021 43.478 24.64 18.02 45.62 3.16
386 5053 9.688592 CATTTTTCTTTCTAGAATGCTTGAGTT 57.311 29.630 5.89 0.00 40.01 3.01
405 5072 9.696917 AGTTCAAAATCATGGACTACATTTTTC 57.303 29.630 0.00 0.00 37.38 2.29
415 5083 3.244976 CGGCAAGTTCAAAATCATGGAC 58.755 45.455 0.00 0.00 0.00 4.02
423 5091 2.725008 CGGCCGGCAAGTTCAAAA 59.275 55.556 30.85 0.00 0.00 2.44
425 5093 3.561120 ATCCGGCCGGCAAGTTCAA 62.561 57.895 39.89 20.48 34.68 2.69
435 5103 0.037605 GTATAGAACCCATCCGGCCG 60.038 60.000 21.04 21.04 33.26 6.13
436 5104 1.002087 CTGTATAGAACCCATCCGGCC 59.998 57.143 0.00 0.00 33.26 6.13
437 5105 1.968493 TCTGTATAGAACCCATCCGGC 59.032 52.381 0.00 0.00 33.26 6.13
438 5106 2.028930 GCTCTGTATAGAACCCATCCGG 60.029 54.545 0.00 0.00 37.81 5.14
439 5107 2.028930 GGCTCTGTATAGAACCCATCCG 60.029 54.545 0.00 0.00 33.83 4.18
441 5109 3.244249 GGTGGCTCTGTATAGAACCCATC 60.244 52.174 6.48 5.20 38.22 3.51
442 5110 2.706190 GGTGGCTCTGTATAGAACCCAT 59.294 50.000 6.48 0.00 38.22 4.00
443 5111 2.116238 GGTGGCTCTGTATAGAACCCA 58.884 52.381 6.48 5.63 38.22 4.51
445 5113 2.399580 AGGGTGGCTCTGTATAGAACC 58.600 52.381 2.10 2.10 39.23 3.62
447 5115 4.160329 CCATAGGGTGGCTCTGTATAGAA 58.840 47.826 0.00 0.00 42.12 2.10
448 5116 3.779444 CCATAGGGTGGCTCTGTATAGA 58.221 50.000 0.00 0.00 42.12 1.98
467 5154 0.108774 TGATGTACGTTTGGGTGCCA 59.891 50.000 0.00 0.00 0.00 4.92
476 5163 2.413837 GCAGAGTGGTTGATGTACGTT 58.586 47.619 0.00 0.00 0.00 3.99
532 5219 6.605849 GGTAAAAATTCCACGTTTACTCCTC 58.394 40.000 8.75 0.00 37.69 3.71
536 5223 5.049474 GTCCGGTAAAAATTCCACGTTTACT 60.049 40.000 0.00 0.00 37.69 2.24
555 5242 5.878116 TCTATTTGAACCAGTTATTGTCCGG 59.122 40.000 0.00 0.00 0.00 5.14
556 5243 6.978343 TCTATTTGAACCAGTTATTGTCCG 57.022 37.500 0.00 0.00 0.00 4.79
598 5291 1.047739 CGAACACCGAACGAGTACAC 58.952 55.000 0.00 0.00 41.76 2.90
602 5295 0.524862 ATAGCGAACACCGAACGAGT 59.475 50.000 0.00 0.00 41.76 4.18
603 5296 0.914551 CATAGCGAACACCGAACGAG 59.085 55.000 0.00 0.00 41.76 4.18
604 5297 0.241749 ACATAGCGAACACCGAACGA 59.758 50.000 0.00 0.00 41.76 3.85
605 5298 1.898938 TACATAGCGAACACCGAACG 58.101 50.000 0.00 0.00 41.76 3.95
606 5299 2.538449 CCATACATAGCGAACACCGAAC 59.462 50.000 0.00 0.00 41.76 3.95
607 5300 2.816689 CCATACATAGCGAACACCGAA 58.183 47.619 0.00 0.00 41.76 4.30
608 5301 1.537348 GCCATACATAGCGAACACCGA 60.537 52.381 0.00 0.00 41.76 4.69
609 5302 0.859232 GCCATACATAGCGAACACCG 59.141 55.000 0.00 0.00 42.21 4.94
610 5303 2.240493 AGCCATACATAGCGAACACC 57.760 50.000 0.00 0.00 0.00 4.16
611 5304 4.342772 CAAAAGCCATACATAGCGAACAC 58.657 43.478 0.00 0.00 0.00 3.32
613 5306 3.792124 GCCAAAAGCCATACATAGCGAAC 60.792 47.826 0.00 0.00 34.35 3.95
614 5307 2.357637 GCCAAAAGCCATACATAGCGAA 59.642 45.455 0.00 0.00 34.35 4.70
615 5308 1.946768 GCCAAAAGCCATACATAGCGA 59.053 47.619 0.00 0.00 34.35 4.93
627 5320 2.671070 CGACTTGGTTATGGCCAAAAGC 60.671 50.000 10.96 2.63 46.59 3.51
628 5321 2.556622 ACGACTTGGTTATGGCCAAAAG 59.443 45.455 10.96 11.44 46.59 2.27
629 5322 2.588620 ACGACTTGGTTATGGCCAAAA 58.411 42.857 10.96 0.00 46.59 2.44
665 5373 7.431249 TGTCTCTTCGTACAAAACTTCTGTAT 58.569 34.615 0.00 0.00 32.15 2.29
679 5387 1.557099 ACATGGGCTGTCTCTTCGTA 58.443 50.000 0.00 0.00 29.94 3.43
682 5390 2.680339 GCTTAACATGGGCTGTCTCTTC 59.320 50.000 0.00 0.00 36.98 2.87
691 5399 2.440247 AGCGGGCTTAACATGGGC 60.440 61.111 0.00 0.00 0.00 5.36
745 5453 0.527565 AGGCGTTGAATGAACATGGC 59.472 50.000 0.00 0.00 33.73 4.40
746 5454 3.270027 TCTAGGCGTTGAATGAACATGG 58.730 45.455 0.00 0.00 33.73 3.66
748 5456 4.769688 TGATCTAGGCGTTGAATGAACAT 58.230 39.130 0.00 0.00 33.73 2.71
749 5457 4.183865 CTGATCTAGGCGTTGAATGAACA 58.816 43.478 0.00 0.00 33.73 3.18
750 5458 4.184629 ACTGATCTAGGCGTTGAATGAAC 58.815 43.478 0.00 0.00 0.00 3.18
751 5459 4.471904 ACTGATCTAGGCGTTGAATGAA 57.528 40.909 0.00 0.00 0.00 2.57
752 5460 4.471904 AACTGATCTAGGCGTTGAATGA 57.528 40.909 0.00 0.00 0.00 2.57
754 5462 4.832248 TCAAACTGATCTAGGCGTTGAAT 58.168 39.130 0.00 0.00 0.00 2.57
757 5465 4.393062 ACAATCAAACTGATCTAGGCGTTG 59.607 41.667 0.00 0.00 35.76 4.10
758 5466 4.579869 ACAATCAAACTGATCTAGGCGTT 58.420 39.130 0.00 0.00 35.76 4.84
759 5467 4.207891 ACAATCAAACTGATCTAGGCGT 57.792 40.909 0.00 0.00 35.76 5.68
760 5468 5.109210 TGTACAATCAAACTGATCTAGGCG 58.891 41.667 0.00 0.00 35.76 5.52
762 5470 7.819415 TCACTTGTACAATCAAACTGATCTAGG 59.181 37.037 9.13 0.00 35.76 3.02
763 5471 8.763049 TCACTTGTACAATCAAACTGATCTAG 57.237 34.615 9.13 0.00 35.76 2.43
764 5472 9.725019 ATTCACTTGTACAATCAAACTGATCTA 57.275 29.630 9.13 0.00 35.76 1.98
765 5473 8.627208 ATTCACTTGTACAATCAAACTGATCT 57.373 30.769 9.13 0.00 35.76 2.75
774 5482 9.898152 TGGTGATAATATTCACTTGTACAATCA 57.102 29.630 9.13 3.02 44.39 2.57
776 5484 9.679661 TGTGGTGATAATATTCACTTGTACAAT 57.320 29.630 9.13 0.00 44.39 2.71
777 5485 9.679661 ATGTGGTGATAATATTCACTTGTACAA 57.320 29.630 8.28 8.28 44.39 2.41
778 5486 9.108284 CATGTGGTGATAATATTCACTTGTACA 57.892 33.333 7.34 0.00 44.39 2.90
779 5487 9.109393 ACATGTGGTGATAATATTCACTTGTAC 57.891 33.333 17.15 9.17 44.39 2.90
780 5488 9.679661 AACATGTGGTGATAATATTCACTTGTA 57.320 29.630 18.17 3.29 44.39 2.41
781 5489 8.579850 AACATGTGGTGATAATATTCACTTGT 57.420 30.769 14.74 14.74 44.39 3.16
782 5490 9.935682 GTAACATGTGGTGATAATATTCACTTG 57.064 33.333 0.00 13.87 44.39 3.16
783 5491 9.679661 TGTAACATGTGGTGATAATATTCACTT 57.320 29.630 0.00 0.00 44.39 3.16
784 5492 9.330063 CTGTAACATGTGGTGATAATATTCACT 57.670 33.333 0.00 0.00 44.39 3.41
785 5493 8.559536 CCTGTAACATGTGGTGATAATATTCAC 58.440 37.037 0.00 0.00 44.27 3.18
786 5494 7.719193 CCCTGTAACATGTGGTGATAATATTCA 59.281 37.037 0.00 0.00 0.00 2.57
787 5495 7.308589 GCCCTGTAACATGTGGTGATAATATTC 60.309 40.741 0.00 0.00 0.00 1.75
788 5496 6.490040 GCCCTGTAACATGTGGTGATAATATT 59.510 38.462 0.00 0.00 0.00 1.28
789 5497 6.003950 GCCCTGTAACATGTGGTGATAATAT 58.996 40.000 0.00 0.00 0.00 1.28
790 5498 5.373222 GCCCTGTAACATGTGGTGATAATA 58.627 41.667 0.00 0.00 0.00 0.98
791 5499 4.207165 GCCCTGTAACATGTGGTGATAAT 58.793 43.478 0.00 0.00 0.00 1.28
792 5500 3.616219 GCCCTGTAACATGTGGTGATAA 58.384 45.455 0.00 0.00 0.00 1.75
793 5501 2.419436 CGCCCTGTAACATGTGGTGATA 60.419 50.000 0.00 0.00 0.00 2.15
794 5502 1.678728 CGCCCTGTAACATGTGGTGAT 60.679 52.381 0.00 0.00 0.00 3.06
795 5503 0.321210 CGCCCTGTAACATGTGGTGA 60.321 55.000 0.00 0.00 0.00 4.02
796 5504 1.922135 GCGCCCTGTAACATGTGGTG 61.922 60.000 0.00 3.50 0.00 4.17
797 5505 1.674322 GCGCCCTGTAACATGTGGT 60.674 57.895 0.00 0.00 0.00 4.16
798 5506 2.406616 GGCGCCCTGTAACATGTGG 61.407 63.158 18.11 0.00 0.00 4.17
799 5507 2.406616 GGGCGCCCTGTAACATGTG 61.407 63.158 38.76 0.00 0.00 3.21
800 5508 2.045340 GGGCGCCCTGTAACATGT 60.045 61.111 38.76 0.00 0.00 3.21
801 5509 3.202001 CGGGCGCCCTGTAACATG 61.202 66.667 41.01 20.75 0.00 3.21
815 5523 2.558554 ATCTCAAAGTCGTCGGCGGG 62.559 60.000 10.62 0.00 38.89 6.13
816 5524 1.153823 ATCTCAAAGTCGTCGGCGG 60.154 57.895 10.62 0.00 38.89 6.13
817 5525 0.456142 TCATCTCAAAGTCGTCGGCG 60.456 55.000 1.15 1.15 39.92 6.46
818 5526 1.927895 ATCATCTCAAAGTCGTCGGC 58.072 50.000 0.00 0.00 0.00 5.54
819 5527 4.504461 CCTAAATCATCTCAAAGTCGTCGG 59.496 45.833 0.00 0.00 0.00 4.79
822 5530 6.287589 ACTCCTAAATCATCTCAAAGTCGT 57.712 37.500 0.00 0.00 0.00 4.34
829 5537 6.484364 TGCATGTACTCCTAAATCATCTCA 57.516 37.500 0.00 0.00 0.00 3.27
830 5538 7.976135 AATGCATGTACTCCTAAATCATCTC 57.024 36.000 0.00 0.00 0.00 2.75
836 5544 9.905713 TTTCTAGAAATGCATGTACTCCTAAAT 57.094 29.630 13.99 0.00 0.00 1.40
846 5554 8.970020 TGTCCATATTTTTCTAGAAATGCATGT 58.030 29.630 18.37 0.00 31.96 3.21
847 5555 9.976511 ATGTCCATATTTTTCTAGAAATGCATG 57.023 29.630 18.37 18.11 31.96 4.06
849 5557 9.187996 TCATGTCCATATTTTTCTAGAAATGCA 57.812 29.630 18.37 8.52 31.96 3.96
880 5588 1.898574 CAGACGGCCAGCCAAGTTT 60.899 57.895 9.78 0.00 35.37 2.66
895 5603 6.605471 TGCTGTTCTTTATAGGAACTCAGA 57.395 37.500 16.29 2.45 42.27 3.27
897 5605 5.938125 GGTTGCTGTTCTTTATAGGAACTCA 59.062 40.000 16.29 12.67 43.00 3.41
1071 5783 2.357881 CTGACGCCTTGCTGCAGA 60.358 61.111 20.43 0.00 0.00 4.26
1078 5790 2.747855 GCCTTCCCTGACGCCTTG 60.748 66.667 0.00 0.00 0.00 3.61
1108 5820 4.395542 GTGCATGCTCTTCATCTCTTTCTT 59.604 41.667 20.33 0.00 31.79 2.52
1283 5995 4.095036 GCCGCTTGAGCTTATTAGAGTTTT 59.905 41.667 1.07 0.00 39.32 2.43
1437 6149 2.368011 GGTAGGGAGGCTGGTGACC 61.368 68.421 0.00 0.00 0.00 4.02
1554 6266 1.131303 ACATGTCGTCCCCCTCCAAA 61.131 55.000 0.00 0.00 0.00 3.28
1677 6389 1.868498 CCGACCGAAACAAAAGCACTA 59.132 47.619 0.00 0.00 0.00 2.74
1717 6429 4.338879 AGAAGGATGTCCATGAAAACCTG 58.661 43.478 1.30 0.00 38.89 4.00
1764 6476 7.911727 TGACTTTCATTAATGCAAAGATCATCG 59.088 33.333 28.15 10.53 33.35 3.84
1774 6486 8.980610 CAAGTTGAATTGACTTTCATTAATGCA 58.019 29.630 10.76 0.00 35.26 3.96
1802 6514 5.518128 AGATCGATGAGTTGTCTTTCATTCG 59.482 40.000 0.54 0.00 34.33 3.34
1858 6570 4.103627 TCATGGGCAAGAGATGATATGTGT 59.896 41.667 0.00 0.00 0.00 3.72
1885 6642 6.198966 GCACATTATTGCAAAACTACCATAGC 59.801 38.462 1.71 0.00 42.49 2.97
1920 6682 4.525487 ACTGTGGGAGTAACTTCGTAATCA 59.475 41.667 0.00 0.00 30.86 2.57
1922 6684 5.476614 GAACTGTGGGAGTAACTTCGTAAT 58.523 41.667 0.00 0.00 33.09 1.89
1923 6685 4.262164 GGAACTGTGGGAGTAACTTCGTAA 60.262 45.833 0.00 0.00 33.09 3.18
1924 6686 3.256631 GGAACTGTGGGAGTAACTTCGTA 59.743 47.826 0.00 0.00 33.09 3.43
1926 6688 2.036733 TGGAACTGTGGGAGTAACTTCG 59.963 50.000 0.00 0.00 33.09 3.79
1941 6703 0.550914 TCACCCAGTTGCTTGGAACT 59.449 50.000 1.68 1.68 40.87 3.01
1947 6709 7.480760 AATATTAAATGTCACCCAGTTGCTT 57.519 32.000 0.00 0.00 32.74 3.91
1949 6711 7.816995 TCAAAATATTAAATGTCACCCAGTTGC 59.183 33.333 0.00 0.00 32.74 4.17
2142 7798 6.764308 ATAATGTCTTTTCACATGACCTGG 57.236 37.500 0.00 0.00 37.07 4.45
2143 7799 8.347771 CCATATAATGTCTTTTCACATGACCTG 58.652 37.037 0.00 0.00 37.07 4.00
2202 7858 8.370493 TCAAAGCATTGTAGTTGAGCTATATC 57.630 34.615 1.04 0.00 37.79 1.63
2203 7859 8.375608 CTCAAAGCATTGTAGTTGAGCTATAT 57.624 34.615 1.04 0.00 40.22 0.86
2215 7871 4.199310 GGCATCCTACTCAAAGCATTGTA 58.801 43.478 1.04 0.00 37.79 2.41
2219 7875 2.240667 AGTGGCATCCTACTCAAAGCAT 59.759 45.455 0.00 0.00 0.00 3.79
2220 7876 1.630369 AGTGGCATCCTACTCAAAGCA 59.370 47.619 0.00 0.00 0.00 3.91
2222 7878 7.500992 TCTATTTAGTGGCATCCTACTCAAAG 58.499 38.462 0.00 0.00 0.00 2.77
2238 7894 8.978874 TTGTATGTGCATGGATTCTATTTAGT 57.021 30.769 0.00 0.00 0.00 2.24
2255 7911 7.173735 TCAAGCTATATCAGGCAATTGTATGTG 59.826 37.037 7.40 0.15 0.00 3.21
2256 7912 7.226441 TCAAGCTATATCAGGCAATTGTATGT 58.774 34.615 7.40 0.00 0.00 2.29
2258 7914 8.874744 AATCAAGCTATATCAGGCAATTGTAT 57.125 30.769 7.40 0.00 0.00 2.29
2290 8743 2.797156 CAGCTATAGTGGTGCTAAAGCG 59.203 50.000 0.84 0.00 45.83 4.68
2330 8783 5.007332 AGTTGTTGTGATCGGTGTTTAGTTC 59.993 40.000 0.00 0.00 0.00 3.01
2331 8784 4.879545 AGTTGTTGTGATCGGTGTTTAGTT 59.120 37.500 0.00 0.00 0.00 2.24
2472 9687 9.489084 GGTATATATGACACAAGAGTATGCAAA 57.511 33.333 0.00 0.00 0.00 3.68
2473 9688 8.870116 AGGTATATATGACACAAGAGTATGCAA 58.130 33.333 0.00 0.00 0.00 4.08
2475 9690 8.744652 AGAGGTATATATGACACAAGAGTATGC 58.255 37.037 0.00 0.00 0.00 3.14
2539 9758 9.787435 TGGAGTACCATGTAATTTGTAATATCC 57.213 33.333 0.00 0.00 41.77 2.59
2643 10542 8.157476 GTCCAAACATCCTAGTATTACCATGAT 58.843 37.037 0.00 0.00 0.00 2.45
2721 12027 5.179452 AGCAATACACCACATAAAGGAGT 57.821 39.130 0.00 0.00 34.31 3.85
2736 12042 6.611381 TGCAACAGACATAAAGAAGCAATAC 58.389 36.000 0.00 0.00 0.00 1.89
2923 12823 5.183713 AGTTGATATGTGTCCACAATGTTGG 59.816 40.000 3.95 0.00 45.41 3.77
3054 12954 5.668471 TCATCATCACTGAGAGGTTTCATC 58.332 41.667 0.00 0.00 34.12 2.92
3096 12996 7.176075 CACTCTCTTGAGCAAATATACGTTTG 58.824 38.462 0.00 0.00 43.85 2.93
3336 13237 1.131504 CTCAGACGAGGAAGAAGGTCG 59.868 57.143 0.00 0.00 39.63 4.79
3402 13303 8.847196 CACATCCATATCAACTGATCTTTCATT 58.153 33.333 0.00 0.00 36.05 2.57
3449 13350 7.869429 AGAAACTAGAATTTGCTTTTCCACATG 59.131 33.333 0.00 0.00 0.00 3.21
3472 13373 4.417426 AAGTTTCTCCGACCTCAAAGAA 57.583 40.909 0.00 0.00 0.00 2.52
3532 13433 7.966812 TGTACAGAGCCTAATTCATCATATGT 58.033 34.615 1.90 0.00 0.00 2.29
3533 13434 8.880750 CATGTACAGAGCCTAATTCATCATATG 58.119 37.037 0.33 0.00 0.00 1.78
3546 13450 1.066858 CGACAACCATGTACAGAGCCT 60.067 52.381 0.33 0.00 40.74 4.58
3745 13649 6.680378 GCAAATGTAACAACAGACCTCACTTT 60.680 38.462 0.00 0.00 0.00 2.66
3848 16326 1.564348 GGTTGAGATGGCCCTCCTTAA 59.436 52.381 0.00 0.00 32.32 1.85
3955 16445 4.108699 TCAACACCTGCAAAAACTTCAG 57.891 40.909 0.00 0.00 0.00 3.02
3990 16480 2.665185 GTCGACGGCAGCCTTGTT 60.665 61.111 10.54 0.00 0.00 2.83
4069 16574 2.066592 TCCCAGGTTTCCAACACCATA 58.933 47.619 0.00 0.00 36.67 2.74
4149 16654 0.743701 CCCTCAGTCTGTGCATGCTC 60.744 60.000 20.33 16.39 0.00 4.26
4274 16791 5.336213 CCCAACAGATCCATTGAAACTTGAG 60.336 44.000 7.89 0.00 0.00 3.02
4276 16793 4.322198 CCCCAACAGATCCATTGAAACTTG 60.322 45.833 7.89 0.00 0.00 3.16
4324 16850 1.742761 CGCATGACAAACTCCTGGAT 58.257 50.000 0.00 0.00 0.00 3.41
4381 16931 4.749099 GGAGAGTTGTGACAGATGATATGC 59.251 45.833 0.00 0.00 0.00 3.14
4412 16962 2.423577 GCACAACCCCTACACTTAGTG 58.576 52.381 11.21 11.21 39.75 2.74
4414 16964 1.274167 TCGCACAACCCCTACACTTAG 59.726 52.381 0.00 0.00 0.00 2.18
4559 17119 1.533625 TTGGCTCGGTGATTTGGAAG 58.466 50.000 0.00 0.00 0.00 3.46
4614 17174 4.196626 ACCGATTTCGATGGTAACTTGA 57.803 40.909 0.67 0.00 43.02 3.02
4624 17184 0.675522 ACCCGCAAACCGATTTCGAT 60.676 50.000 0.67 0.00 43.02 3.59
4667 17227 0.808755 GTCAAACCAATAGCCACCGG 59.191 55.000 0.00 0.00 0.00 5.28
4675 17238 2.687425 CGATGCCCATGTCAAACCAATA 59.313 45.455 0.00 0.00 0.00 1.90
4705 17274 2.577059 GATGTGGCGAAGGGACGA 59.423 61.111 0.00 0.00 35.09 4.20
4716 17285 1.656652 GGAACCAGACATCGATGTGG 58.343 55.000 34.48 29.44 41.95 4.17
4720 17289 1.144057 GGCGGAACCAGACATCGAT 59.856 57.895 0.00 0.00 38.86 3.59
4824 17396 5.773239 TGTCCACGTCGAAATAGATTTTC 57.227 39.130 0.00 0.00 0.00 2.29
4825 17397 6.257193 GGTATGTCCACGTCGAAATAGATTTT 59.743 38.462 0.00 0.00 35.97 1.82
4827 17399 5.163488 TGGTATGTCCACGTCGAAATAGATT 60.163 40.000 0.00 0.00 41.93 2.40
4831 17414 3.695556 TCTGGTATGTCCACGTCGAAATA 59.304 43.478 0.00 0.00 41.93 1.40
4833 17416 1.887854 TCTGGTATGTCCACGTCGAAA 59.112 47.619 0.00 0.00 41.93 3.46
4878 17528 3.730215 TGCATAAAAAGGCACTAGGGA 57.270 42.857 0.00 0.00 38.49 4.20
5079 17770 8.264347 AGTTTGTGACCTTTAAATGGTTTTCAT 58.736 29.630 9.72 0.00 38.03 2.57
5080 17771 7.547370 CAGTTTGTGACCTTTAAATGGTTTTCA 59.453 33.333 9.72 7.55 38.03 2.69
5081 17772 7.547722 ACAGTTTGTGACCTTTAAATGGTTTTC 59.452 33.333 9.72 5.81 38.03 2.29
5082 17773 7.390823 ACAGTTTGTGACCTTTAAATGGTTTT 58.609 30.769 9.72 0.00 38.03 2.43
5083 17774 6.941857 ACAGTTTGTGACCTTTAAATGGTTT 58.058 32.000 9.72 0.00 38.03 3.27
5084 17775 6.538945 ACAGTTTGTGACCTTTAAATGGTT 57.461 33.333 9.72 0.00 38.03 3.67
5118 17854 6.681777 AGTGTGGAAAAGAAAATCTATGCAC 58.318 36.000 0.00 9.35 36.24 4.57
5177 17914 4.714802 TGGCAGCCTATAGAAACAAGTAGA 59.285 41.667 14.15 0.00 0.00 2.59
5228 18080 3.507786 TGGATACGCATACGCATATGTC 58.492 45.455 4.29 0.00 45.53 3.06
5353 18214 9.857957 AACTACTAGTAGTGAGCAAATACTTTC 57.142 33.333 31.26 0.00 44.96 2.62
5404 18326 8.598764 TTTATATACTCCCCTCCCCATTTTTA 57.401 34.615 0.00 0.00 0.00 1.52
5565 18499 7.234577 TGGCTAAAAGGGACACAAGATATTTTT 59.765 33.333 0.00 0.00 0.00 1.94
5698 18970 5.350091 CACCGTCAGAAACCAAAACAAAAAT 59.650 36.000 0.00 0.00 0.00 1.82
5717 18990 0.251165 CCTCAAAATCCACCCACCGT 60.251 55.000 0.00 0.00 0.00 4.83
5786 19061 1.202770 GGGACCGGCTATGCATTAAGT 60.203 52.381 3.54 0.00 0.00 2.24
5936 19222 6.737720 TGATTGCTAGGAATATGACAGTCT 57.262 37.500 9.72 0.00 0.00 3.24
5965 19251 6.795144 TGGTCCCTCGAAACTGTATAATTA 57.205 37.500 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.