Multiple sequence alignment - TraesCS2A01G025100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G025100 chr2A 100.000 3135 0 0 351 3485 11983988 11980854 0.000000e+00 5790.0
1 TraesCS2A01G025100 chr2A 86.463 1241 138 16 2069 3305 11782637 11781423 0.000000e+00 1334.0
2 TraesCS2A01G025100 chr2A 75.967 491 93 18 2545 3025 709413728 709414203 2.710000e-56 230.0
3 TraesCS2A01G025100 chr2A 100.000 60 0 0 1 60 11984338 11984279 1.020000e-20 111.0
4 TraesCS2A01G025100 chr2A 97.959 49 1 0 12 60 59334636 59334684 6.200000e-13 86.1
5 TraesCS2A01G025100 chr2D 95.009 2705 116 11 789 3485 11327976 11325283 0.000000e+00 4229.0
6 TraesCS2A01G025100 chr2D 77.778 513 88 17 2522 3030 620545158 620545648 3.400000e-75 292.0
7 TraesCS2A01G025100 chr2D 97.959 49 0 1 12 60 272271022 272270975 2.230000e-12 84.2
8 TraesCS2A01G025100 chr2D 100.000 45 0 0 16 60 640152460 640152416 2.230000e-12 84.2
9 TraesCS2A01G025100 chr2B 90.992 1654 127 16 874 2517 17515407 17513766 0.000000e+00 2209.0
10 TraesCS2A01G025100 chr2B 90.851 1563 131 6 964 2517 17503300 17501741 0.000000e+00 2084.0
11 TraesCS2A01G025100 chr2B 91.337 1339 104 6 1182 2511 17444261 17445596 0.000000e+00 1820.0
12 TraesCS2A01G025100 chr2B 87.783 1547 161 16 949 2485 17440253 17438725 0.000000e+00 1784.0
13 TraesCS2A01G025100 chr2B 89.394 924 86 7 1604 2517 17149599 17150520 0.000000e+00 1153.0
14 TraesCS2A01G025100 chr2B 84.180 866 94 25 2013 2875 17094638 17093813 0.000000e+00 800.0
15 TraesCS2A01G025100 chr2B 88.906 649 59 13 963 1608 17143913 17144551 0.000000e+00 787.0
16 TraesCS2A01G025100 chr2B 84.570 674 77 11 2149 2819 17151283 17151932 0.000000e+00 643.0
17 TraesCS2A01G025100 chr2B 86.905 420 45 5 2886 3305 17151932 17152341 2.450000e-126 462.0
18 TraesCS2A01G025100 chr2B 81.690 355 44 12 2524 2875 17437093 17436757 3.430000e-70 276.0
19 TraesCS2A01G025100 chr2B 89.320 206 18 3 3102 3305 17446800 17447003 4.460000e-64 255.0
20 TraesCS2A01G025100 chr2B 92.000 175 13 1 677 850 17515570 17515396 9.660000e-61 244.0
21 TraesCS2A01G025100 chr2B 81.295 278 30 12 678 942 17142738 17143006 4.560000e-49 206.0
22 TraesCS2A01G025100 chr2B 80.000 330 21 10 745 1050 17443946 17444254 5.900000e-48 202.0
23 TraesCS2A01G025100 chr2B 93.130 131 8 1 761 891 17503761 17503632 1.280000e-44 191.0
24 TraesCS2A01G025100 chr2B 88.750 80 9 0 2981 3060 17046479 17046400 7.960000e-17 99.0
25 TraesCS2A01G025100 chr2B 96.078 51 2 0 10 60 701923157 701923107 2.230000e-12 84.2
26 TraesCS2A01G025100 chr2B 85.000 80 12 0 2981 3060 17436746 17436667 8.020000e-12 82.4
27 TraesCS2A01G025100 chr7A 73.133 1232 239 56 1261 2443 22198250 22199438 1.190000e-94 357.0
28 TraesCS2A01G025100 chr3B 73.054 1169 236 51 1090 2231 13905552 13904436 1.200000e-89 340.0
29 TraesCS2A01G025100 chr3B 97.959 49 0 1 12 60 796656572 796656619 2.230000e-12 84.2
30 TraesCS2A01G025100 chr7D 73.358 822 164 40 1130 1931 21773872 21774658 1.610000e-63 254.0
31 TraesCS2A01G025100 chr1D 74.395 496 88 27 2546 3033 334476097 334475633 3.570000e-40 176.0
32 TraesCS2A01G025100 chr1D 97.959 49 0 1 12 60 130670108 130670155 2.230000e-12 84.2
33 TraesCS2A01G025100 chr3A 77.852 298 50 9 2580 2872 647190006 647190292 1.660000e-38 171.0
34 TraesCS2A01G025100 chr5A 92.063 63 5 0 604 666 654583690 654583752 4.790000e-14 89.8
35 TraesCS2A01G025100 chr5A 79.646 113 18 5 2686 2795 550270932 550270822 3.730000e-10 76.8
36 TraesCS2A01G025100 chr1B 98.039 51 0 1 11 60 10761695 10761645 1.720000e-13 87.9
37 TraesCS2A01G025100 chr5B 90.476 63 6 0 604 666 663989627 663989689 2.230000e-12 84.2
38 TraesCS2A01G025100 chr4B 96.078 51 2 0 8 58 39195470 39195520 2.230000e-12 84.2
39 TraesCS2A01G025100 chr3D 94.340 53 2 1 9 60 547450424 547450476 2.880000e-11 80.5
40 TraesCS2A01G025100 chr5D 85.294 68 9 1 2585 2651 46307234 46307301 6.240000e-08 69.4
41 TraesCS2A01G025100 chr5D 91.111 45 4 0 2622 2666 525954319 525954275 1.040000e-05 62.1
42 TraesCS2A01G025100 chr7B 85.455 55 8 0 604 658 140656766 140656820 1.350000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G025100 chr2A 11980854 11984338 3484 True 2950.500000 5790 100.000000 1 3485 2 chr2A.!!$R2 3484
1 TraesCS2A01G025100 chr2A 11781423 11782637 1214 True 1334.000000 1334 86.463000 2069 3305 1 chr2A.!!$R1 1236
2 TraesCS2A01G025100 chr2D 11325283 11327976 2693 True 4229.000000 4229 95.009000 789 3485 1 chr2D.!!$R1 2696
3 TraesCS2A01G025100 chr2B 17513766 17515570 1804 True 1226.500000 2209 91.496000 677 2517 2 chr2B.!!$R6 1840
4 TraesCS2A01G025100 chr2B 17501741 17503761 2020 True 1137.500000 2084 91.990500 761 2517 2 chr2B.!!$R5 1756
5 TraesCS2A01G025100 chr2B 17093813 17094638 825 True 800.000000 800 84.180000 2013 2875 1 chr2B.!!$R2 862
6 TraesCS2A01G025100 chr2B 17443946 17447003 3057 False 759.000000 1820 86.885667 745 3305 3 chr2B.!!$F3 2560
7 TraesCS2A01G025100 chr2B 17149599 17152341 2742 False 752.666667 1153 86.956333 1604 3305 3 chr2B.!!$F2 1701
8 TraesCS2A01G025100 chr2B 17436667 17440253 3586 True 714.133333 1784 84.824333 949 3060 3 chr2B.!!$R4 2111
9 TraesCS2A01G025100 chr2B 17142738 17144551 1813 False 496.500000 787 85.100500 678 1608 2 chr2B.!!$F1 930
10 TraesCS2A01G025100 chr7A 22198250 22199438 1188 False 357.000000 357 73.133000 1261 2443 1 chr7A.!!$F1 1182
11 TraesCS2A01G025100 chr3B 13904436 13905552 1116 True 340.000000 340 73.054000 1090 2231 1 chr3B.!!$R1 1141
12 TraesCS2A01G025100 chr7D 21773872 21774658 786 False 254.000000 254 73.358000 1130 1931 1 chr7D.!!$F1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 662 0.040067 CGCTCCAGTGCTTTGGTTTC 60.04 55.0 6.9 0.0 39.35 2.78 F
662 663 0.040067 GCTCCAGTGCTTTGGTTTCG 60.04 55.0 6.9 0.0 39.35 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 2827 1.000646 GTCGAGGAGACTGACCCCT 60.001 63.158 0.0 0.0 46.13 4.79 R
2666 5792 2.432874 TGTAGGCCGTAGCACATTGTAT 59.567 45.455 0.0 0.0 42.56 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.303351 AAAGCATCTAATGGAGGGTGG 57.697 47.619 0.00 0.00 36.55 4.61
21 22 1.143813 AGCATCTAATGGAGGGTGGG 58.856 55.000 0.00 0.00 35.07 4.61
22 23 0.111253 GCATCTAATGGAGGGTGGGG 59.889 60.000 0.00 0.00 0.00 4.96
23 24 1.522900 CATCTAATGGAGGGTGGGGT 58.477 55.000 0.00 0.00 0.00 4.95
24 25 2.701551 CATCTAATGGAGGGTGGGGTA 58.298 52.381 0.00 0.00 0.00 3.69
25 26 2.489528 TCTAATGGAGGGTGGGGTAG 57.510 55.000 0.00 0.00 0.00 3.18
26 27 1.941682 TCTAATGGAGGGTGGGGTAGA 59.058 52.381 0.00 0.00 0.00 2.59
27 28 2.527057 TCTAATGGAGGGTGGGGTAGAT 59.473 50.000 0.00 0.00 0.00 1.98
28 29 1.522900 AATGGAGGGTGGGGTAGATG 58.477 55.000 0.00 0.00 0.00 2.90
29 30 1.062488 ATGGAGGGTGGGGTAGATGC 61.062 60.000 0.00 0.00 0.00 3.91
30 31 1.384643 GGAGGGTGGGGTAGATGCT 60.385 63.158 0.00 0.00 0.00 3.79
31 32 0.988678 GGAGGGTGGGGTAGATGCTT 60.989 60.000 0.00 0.00 0.00 3.91
32 33 0.919710 GAGGGTGGGGTAGATGCTTT 59.080 55.000 0.00 0.00 0.00 3.51
33 34 0.625849 AGGGTGGGGTAGATGCTTTG 59.374 55.000 0.00 0.00 0.00 2.77
34 35 0.331616 GGGTGGGGTAGATGCTTTGT 59.668 55.000 0.00 0.00 0.00 2.83
35 36 1.463674 GGTGGGGTAGATGCTTTGTG 58.536 55.000 0.00 0.00 0.00 3.33
36 37 1.004277 GGTGGGGTAGATGCTTTGTGA 59.996 52.381 0.00 0.00 0.00 3.58
37 38 2.357154 GGTGGGGTAGATGCTTTGTGAT 60.357 50.000 0.00 0.00 0.00 3.06
38 39 3.356290 GTGGGGTAGATGCTTTGTGATT 58.644 45.455 0.00 0.00 0.00 2.57
39 40 3.763897 GTGGGGTAGATGCTTTGTGATTT 59.236 43.478 0.00 0.00 0.00 2.17
40 41 3.763360 TGGGGTAGATGCTTTGTGATTTG 59.237 43.478 0.00 0.00 0.00 2.32
41 42 3.763897 GGGGTAGATGCTTTGTGATTTGT 59.236 43.478 0.00 0.00 0.00 2.83
42 43 4.947388 GGGGTAGATGCTTTGTGATTTGTA 59.053 41.667 0.00 0.00 0.00 2.41
43 44 5.417580 GGGGTAGATGCTTTGTGATTTGTAA 59.582 40.000 0.00 0.00 0.00 2.41
44 45 6.071616 GGGGTAGATGCTTTGTGATTTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
45 46 7.363793 GGGGTAGATGCTTTGTGATTTGTAAAT 60.364 37.037 0.00 0.00 0.00 1.40
46 47 7.489113 GGGTAGATGCTTTGTGATTTGTAAATG 59.511 37.037 0.00 0.00 0.00 2.32
47 48 6.956299 AGATGCTTTGTGATTTGTAAATGC 57.044 33.333 0.00 0.00 0.00 3.56
48 49 5.870978 AGATGCTTTGTGATTTGTAAATGCC 59.129 36.000 0.00 0.00 0.00 4.40
49 50 4.953667 TGCTTTGTGATTTGTAAATGCCA 58.046 34.783 0.00 0.00 0.00 4.92
50 51 4.749099 TGCTTTGTGATTTGTAAATGCCAC 59.251 37.500 0.00 0.00 0.00 5.01
51 52 4.143347 GCTTTGTGATTTGTAAATGCCACG 60.143 41.667 0.00 0.00 30.17 4.94
52 53 4.576216 TTGTGATTTGTAAATGCCACGT 57.424 36.364 0.00 0.00 30.17 4.49
53 54 3.894920 TGTGATTTGTAAATGCCACGTG 58.105 40.909 9.08 9.08 30.17 4.49
54 55 3.316588 TGTGATTTGTAAATGCCACGTGT 59.683 39.130 15.65 0.00 30.17 4.49
55 56 3.911964 GTGATTTGTAAATGCCACGTGTC 59.088 43.478 15.65 0.98 0.00 3.67
56 57 3.565902 TGATTTGTAAATGCCACGTGTCA 59.434 39.130 15.65 8.63 0.00 3.58
57 58 4.217334 TGATTTGTAAATGCCACGTGTCAT 59.783 37.500 15.65 11.07 0.00 3.06
58 59 3.822594 TTGTAAATGCCACGTGTCATC 57.177 42.857 13.12 1.09 0.00 2.92
59 60 2.080693 TGTAAATGCCACGTGTCATCC 58.919 47.619 13.12 4.88 0.00 3.51
376 377 9.753674 TTCATTTCTACACCCTAAAATCTTGAT 57.246 29.630 0.00 0.00 0.00 2.57
377 378 9.753674 TCATTTCTACACCCTAAAATCTTGATT 57.246 29.630 0.00 0.00 0.00 2.57
381 382 9.886132 TTCTACACCCTAAAATCTTGATTACTC 57.114 33.333 0.00 0.00 0.00 2.59
382 383 8.483758 TCTACACCCTAAAATCTTGATTACTCC 58.516 37.037 0.00 0.00 0.00 3.85
383 384 7.027874 ACACCCTAAAATCTTGATTACTCCA 57.972 36.000 0.00 0.00 0.00 3.86
384 385 7.466804 ACACCCTAAAATCTTGATTACTCCAA 58.533 34.615 0.00 0.00 0.00 3.53
385 386 7.611855 ACACCCTAAAATCTTGATTACTCCAAG 59.388 37.037 0.00 0.00 41.63 3.61
386 387 6.603599 ACCCTAAAATCTTGATTACTCCAAGC 59.396 38.462 0.00 0.00 40.45 4.01
387 388 6.039829 CCCTAAAATCTTGATTACTCCAAGCC 59.960 42.308 0.00 0.00 40.45 4.35
388 389 5.921962 AAAATCTTGATTACTCCAAGCCC 57.078 39.130 0.00 0.00 40.45 5.19
389 390 4.591321 AATCTTGATTACTCCAAGCCCA 57.409 40.909 0.00 0.00 40.45 5.36
390 391 4.803329 ATCTTGATTACTCCAAGCCCAT 57.197 40.909 0.00 0.00 40.45 4.00
391 392 4.156455 TCTTGATTACTCCAAGCCCATC 57.844 45.455 0.00 0.00 40.45 3.51
392 393 3.523157 TCTTGATTACTCCAAGCCCATCA 59.477 43.478 0.00 0.00 40.45 3.07
393 394 4.166725 TCTTGATTACTCCAAGCCCATCAT 59.833 41.667 0.00 0.00 40.45 2.45
394 395 4.090761 TGATTACTCCAAGCCCATCATC 57.909 45.455 0.00 0.00 0.00 2.92
395 396 3.718434 TGATTACTCCAAGCCCATCATCT 59.282 43.478 0.00 0.00 0.00 2.90
396 397 3.845781 TTACTCCAAGCCCATCATCTC 57.154 47.619 0.00 0.00 0.00 2.75
397 398 1.588239 ACTCCAAGCCCATCATCTCA 58.412 50.000 0.00 0.00 0.00 3.27
398 399 1.918262 ACTCCAAGCCCATCATCTCAA 59.082 47.619 0.00 0.00 0.00 3.02
399 400 2.309755 ACTCCAAGCCCATCATCTCAAA 59.690 45.455 0.00 0.00 0.00 2.69
400 401 3.053095 ACTCCAAGCCCATCATCTCAAAT 60.053 43.478 0.00 0.00 0.00 2.32
401 402 3.958798 CTCCAAGCCCATCATCTCAAATT 59.041 43.478 0.00 0.00 0.00 1.82
402 403 3.956199 TCCAAGCCCATCATCTCAAATTC 59.044 43.478 0.00 0.00 0.00 2.17
403 404 3.069158 CCAAGCCCATCATCTCAAATTCC 59.931 47.826 0.00 0.00 0.00 3.01
404 405 3.675348 AGCCCATCATCTCAAATTCCA 57.325 42.857 0.00 0.00 0.00 3.53
405 406 3.294214 AGCCCATCATCTCAAATTCCAC 58.706 45.455 0.00 0.00 0.00 4.02
406 407 2.363359 GCCCATCATCTCAAATTCCACC 59.637 50.000 0.00 0.00 0.00 4.61
407 408 3.634504 CCCATCATCTCAAATTCCACCA 58.365 45.455 0.00 0.00 0.00 4.17
408 409 4.220724 CCCATCATCTCAAATTCCACCAT 58.779 43.478 0.00 0.00 0.00 3.55
409 410 5.387788 CCCATCATCTCAAATTCCACCATA 58.612 41.667 0.00 0.00 0.00 2.74
410 411 5.242393 CCCATCATCTCAAATTCCACCATAC 59.758 44.000 0.00 0.00 0.00 2.39
411 412 6.066690 CCATCATCTCAAATTCCACCATACT 58.933 40.000 0.00 0.00 0.00 2.12
412 413 6.548622 CCATCATCTCAAATTCCACCATACTT 59.451 38.462 0.00 0.00 0.00 2.24
413 414 7.069085 CCATCATCTCAAATTCCACCATACTTT 59.931 37.037 0.00 0.00 0.00 2.66
414 415 9.123902 CATCATCTCAAATTCCACCATACTTTA 57.876 33.333 0.00 0.00 0.00 1.85
415 416 8.737168 TCATCTCAAATTCCACCATACTTTAG 57.263 34.615 0.00 0.00 0.00 1.85
416 417 7.775093 TCATCTCAAATTCCACCATACTTTAGG 59.225 37.037 0.00 0.00 0.00 2.69
417 418 7.265599 TCTCAAATTCCACCATACTTTAGGA 57.734 36.000 0.00 0.00 0.00 2.94
418 419 7.872138 TCTCAAATTCCACCATACTTTAGGAT 58.128 34.615 0.00 0.00 0.00 3.24
419 420 8.336235 TCTCAAATTCCACCATACTTTAGGATT 58.664 33.333 0.00 0.00 0.00 3.01
420 421 8.893563 TCAAATTCCACCATACTTTAGGATTT 57.106 30.769 0.00 0.00 0.00 2.17
421 422 8.748412 TCAAATTCCACCATACTTTAGGATTTG 58.252 33.333 0.00 0.00 33.35 2.32
422 423 7.660030 AATTCCACCATACTTTAGGATTTGG 57.340 36.000 0.00 0.00 0.00 3.28
423 424 6.395780 TTCCACCATACTTTAGGATTTGGA 57.604 37.500 0.00 0.00 0.00 3.53
424 425 6.395780 TCCACCATACTTTAGGATTTGGAA 57.604 37.500 0.00 0.00 0.00 3.53
425 426 6.423182 TCCACCATACTTTAGGATTTGGAAG 58.577 40.000 0.00 0.00 0.00 3.46
426 427 6.216662 TCCACCATACTTTAGGATTTGGAAGA 59.783 38.462 0.00 0.00 0.00 2.87
427 428 6.543831 CCACCATACTTTAGGATTTGGAAGAG 59.456 42.308 0.00 0.00 0.00 2.85
428 429 6.543831 CACCATACTTTAGGATTTGGAAGAGG 59.456 42.308 0.00 0.00 0.00 3.69
429 430 6.217693 ACCATACTTTAGGATTTGGAAGAGGT 59.782 38.462 0.00 0.00 0.00 3.85
430 431 7.119387 CCATACTTTAGGATTTGGAAGAGGTT 58.881 38.462 0.00 0.00 0.00 3.50
431 432 7.283354 CCATACTTTAGGATTTGGAAGAGGTTC 59.717 40.741 0.00 0.00 0.00 3.62
432 433 6.200878 ACTTTAGGATTTGGAAGAGGTTCA 57.799 37.500 0.00 0.00 33.93 3.18
433 434 6.004574 ACTTTAGGATTTGGAAGAGGTTCAC 58.995 40.000 0.00 0.00 33.93 3.18
434 435 3.441500 AGGATTTGGAAGAGGTTCACC 57.558 47.619 0.00 0.00 33.93 4.02
448 449 5.104259 AGGTTCACCTGATCTACATTTCC 57.896 43.478 0.00 0.00 46.55 3.13
449 450 3.871594 GGTTCACCTGATCTACATTTCCG 59.128 47.826 0.00 0.00 0.00 4.30
450 451 3.179443 TCACCTGATCTACATTTCCGC 57.821 47.619 0.00 0.00 0.00 5.54
451 452 2.158957 TCACCTGATCTACATTTCCGCC 60.159 50.000 0.00 0.00 0.00 6.13
452 453 1.837439 ACCTGATCTACATTTCCGCCA 59.163 47.619 0.00 0.00 0.00 5.69
453 454 2.238646 ACCTGATCTACATTTCCGCCAA 59.761 45.455 0.00 0.00 0.00 4.52
454 455 3.278574 CCTGATCTACATTTCCGCCAAA 58.721 45.455 0.00 0.00 0.00 3.28
455 456 3.885297 CCTGATCTACATTTCCGCCAAAT 59.115 43.478 0.00 0.00 34.79 2.32
456 457 4.023707 CCTGATCTACATTTCCGCCAAATC 60.024 45.833 0.00 0.00 31.79 2.17
457 458 3.882888 TGATCTACATTTCCGCCAAATCC 59.117 43.478 0.00 0.00 31.79 3.01
458 459 3.358111 TCTACATTTCCGCCAAATCCA 57.642 42.857 0.00 0.00 31.79 3.41
459 460 3.897239 TCTACATTTCCGCCAAATCCAT 58.103 40.909 0.00 0.00 31.79 3.41
460 461 4.277476 TCTACATTTCCGCCAAATCCATT 58.723 39.130 0.00 0.00 31.79 3.16
461 462 3.979101 ACATTTCCGCCAAATCCATTT 57.021 38.095 0.00 0.00 31.79 2.32
462 463 3.598299 ACATTTCCGCCAAATCCATTTG 58.402 40.909 5.21 5.21 45.04 2.32
463 464 3.007831 ACATTTCCGCCAAATCCATTTGT 59.992 39.130 10.43 0.00 44.21 2.83
464 465 2.739885 TTCCGCCAAATCCATTTGTG 57.260 45.000 10.43 4.41 44.21 3.33
465 466 1.916506 TCCGCCAAATCCATTTGTGA 58.083 45.000 10.43 2.83 44.21 3.58
466 467 2.455557 TCCGCCAAATCCATTTGTGAT 58.544 42.857 10.43 0.00 44.21 3.06
467 468 2.830923 TCCGCCAAATCCATTTGTGATT 59.169 40.909 10.43 0.00 44.21 2.57
468 469 3.260380 TCCGCCAAATCCATTTGTGATTT 59.740 39.130 10.43 0.00 44.21 2.17
469 470 4.002316 CCGCCAAATCCATTTGTGATTTT 58.998 39.130 10.43 0.00 44.21 1.82
470 471 4.093261 CCGCCAAATCCATTTGTGATTTTC 59.907 41.667 10.43 0.00 44.21 2.29
471 472 4.093261 CGCCAAATCCATTTGTGATTTTCC 59.907 41.667 10.43 0.00 44.21 3.13
472 473 5.002516 GCCAAATCCATTTGTGATTTTCCA 58.997 37.500 10.43 0.00 44.21 3.53
473 474 5.472820 GCCAAATCCATTTGTGATTTTCCAA 59.527 36.000 10.43 0.00 44.21 3.53
474 475 6.568271 GCCAAATCCATTTGTGATTTTCCAAC 60.568 38.462 10.43 0.00 44.21 3.77
475 476 6.485984 CCAAATCCATTTGTGATTTTCCAACA 59.514 34.615 10.43 0.00 44.21 3.33
476 477 7.013083 CCAAATCCATTTGTGATTTTCCAACAA 59.987 33.333 10.43 0.00 44.21 2.83
477 478 7.733402 AATCCATTTGTGATTTTCCAACAAG 57.267 32.000 0.00 0.00 0.00 3.16
478 479 6.232581 TCCATTTGTGATTTTCCAACAAGT 57.767 33.333 0.00 0.00 0.00 3.16
479 480 6.648192 TCCATTTGTGATTTTCCAACAAGTT 58.352 32.000 0.00 0.00 0.00 2.66
480 481 6.760770 TCCATTTGTGATTTTCCAACAAGTTC 59.239 34.615 0.00 0.00 0.00 3.01
481 482 6.538021 CCATTTGTGATTTTCCAACAAGTTCA 59.462 34.615 0.00 0.00 0.00 3.18
482 483 7.227116 CCATTTGTGATTTTCCAACAAGTTCAT 59.773 33.333 0.00 0.00 0.00 2.57
483 484 8.614346 CATTTGTGATTTTCCAACAAGTTCATT 58.386 29.630 0.00 0.00 0.00 2.57
484 485 7.536895 TTGTGATTTTCCAACAAGTTCATTG 57.463 32.000 0.00 0.00 45.01 2.82
499 500 8.633075 CAAGTTCATTGTCAACACTTGTTATT 57.367 30.769 18.08 0.00 39.58 1.40
500 501 8.745837 CAAGTTCATTGTCAACACTTGTTATTC 58.254 33.333 18.08 0.00 39.58 1.75
501 502 8.225603 AGTTCATTGTCAACACTTGTTATTCT 57.774 30.769 0.00 0.00 36.32 2.40
502 503 8.686334 AGTTCATTGTCAACACTTGTTATTCTT 58.314 29.630 0.00 0.00 36.32 2.52
503 504 8.745837 GTTCATTGTCAACACTTGTTATTCTTG 58.254 33.333 0.00 0.00 36.32 3.02
504 505 8.219546 TCATTGTCAACACTTGTTATTCTTGA 57.780 30.769 0.00 0.00 36.32 3.02
505 506 8.681806 TCATTGTCAACACTTGTTATTCTTGAA 58.318 29.630 0.00 0.00 36.32 2.69
506 507 9.467258 CATTGTCAACACTTGTTATTCTTGAAT 57.533 29.630 0.00 1.35 36.32 2.57
513 514 9.927668 AACACTTGTTATTCTTGAATATTTGGG 57.072 29.630 4.19 0.95 36.32 4.12
514 515 8.034804 ACACTTGTTATTCTTGAATATTTGGGC 58.965 33.333 4.19 0.00 0.00 5.36
515 516 8.253113 CACTTGTTATTCTTGAATATTTGGGCT 58.747 33.333 4.19 0.00 0.00 5.19
516 517 8.470002 ACTTGTTATTCTTGAATATTTGGGCTC 58.530 33.333 4.19 0.00 0.00 4.70
517 518 7.346751 TGTTATTCTTGAATATTTGGGCTCC 57.653 36.000 4.19 0.00 0.00 4.70
518 519 7.125391 TGTTATTCTTGAATATTTGGGCTCCT 58.875 34.615 4.19 0.00 0.00 3.69
519 520 8.278639 TGTTATTCTTGAATATTTGGGCTCCTA 58.721 33.333 4.19 0.00 0.00 2.94
520 521 8.568794 GTTATTCTTGAATATTTGGGCTCCTAC 58.431 37.037 4.19 0.00 0.00 3.18
521 522 4.703897 TCTTGAATATTTGGGCTCCTACG 58.296 43.478 0.00 0.00 0.00 3.51
522 523 4.163458 TCTTGAATATTTGGGCTCCTACGT 59.837 41.667 0.00 0.00 0.00 3.57
523 524 3.804036 TGAATATTTGGGCTCCTACGTG 58.196 45.455 0.00 0.00 0.00 4.49
524 525 2.930826 ATATTTGGGCTCCTACGTGG 57.069 50.000 0.00 0.00 37.10 4.94
525 526 1.575419 TATTTGGGCTCCTACGTGGT 58.425 50.000 0.00 0.00 37.07 4.16
526 527 1.575419 ATTTGGGCTCCTACGTGGTA 58.425 50.000 0.00 0.00 37.07 3.25
527 528 0.899720 TTTGGGCTCCTACGTGGTAG 59.100 55.000 0.00 0.00 36.04 3.18
536 537 0.822164 CTACGTGGTAGGGGTCAAGG 59.178 60.000 0.00 0.00 32.98 3.61
537 538 1.259840 TACGTGGTAGGGGTCAAGGC 61.260 60.000 0.00 0.00 0.00 4.35
538 539 2.267961 GTGGTAGGGGTCAAGGCG 59.732 66.667 0.00 0.00 0.00 5.52
539 540 3.712907 TGGTAGGGGTCAAGGCGC 61.713 66.667 0.00 0.00 0.00 6.53
540 541 4.832608 GGTAGGGGTCAAGGCGCG 62.833 72.222 0.00 0.00 0.00 6.86
541 542 4.832608 GTAGGGGTCAAGGCGCGG 62.833 72.222 8.83 0.00 0.00 6.46
545 546 4.699522 GGGTCAAGGCGCGGAAGT 62.700 66.667 8.83 0.00 0.00 3.01
546 547 2.668550 GGTCAAGGCGCGGAAGTT 60.669 61.111 8.83 0.00 0.00 2.66
547 548 2.258726 GGTCAAGGCGCGGAAGTTT 61.259 57.895 8.83 0.00 0.00 2.66
548 549 1.652563 GTCAAGGCGCGGAAGTTTT 59.347 52.632 8.83 0.00 0.00 2.43
549 550 0.385598 GTCAAGGCGCGGAAGTTTTC 60.386 55.000 8.83 0.00 0.00 2.29
550 551 0.534203 TCAAGGCGCGGAAGTTTTCT 60.534 50.000 8.83 0.00 0.00 2.52
551 552 0.310854 CAAGGCGCGGAAGTTTTCTT 59.689 50.000 8.83 0.00 43.55 2.52
552 553 0.310854 AAGGCGCGGAAGTTTTCTTG 59.689 50.000 8.83 0.00 40.61 3.02
553 554 1.729484 GGCGCGGAAGTTTTCTTGC 60.729 57.895 8.83 0.00 43.33 4.01
554 555 1.282875 GCGCGGAAGTTTTCTTGCT 59.717 52.632 8.83 0.00 44.34 3.91
555 556 0.317854 GCGCGGAAGTTTTCTTGCTT 60.318 50.000 8.83 0.00 44.34 3.91
556 557 1.398595 CGCGGAAGTTTTCTTGCTTG 58.601 50.000 0.00 0.00 44.34 4.01
557 558 1.268539 CGCGGAAGTTTTCTTGCTTGT 60.269 47.619 0.00 0.00 44.34 3.16
558 559 2.119457 GCGGAAGTTTTCTTGCTTGTG 58.881 47.619 0.00 0.00 44.34 3.33
559 560 2.731217 CGGAAGTTTTCTTGCTTGTGG 58.269 47.619 0.00 0.00 44.34 4.17
560 561 2.099098 CGGAAGTTTTCTTGCTTGTGGT 59.901 45.455 0.00 0.00 44.34 4.16
561 562 3.447742 GGAAGTTTTCTTGCTTGTGGTG 58.552 45.455 0.00 0.00 43.41 4.17
562 563 3.119137 GGAAGTTTTCTTGCTTGTGGTGT 60.119 43.478 0.00 0.00 43.41 4.16
563 564 3.508744 AGTTTTCTTGCTTGTGGTGTG 57.491 42.857 0.00 0.00 0.00 3.82
564 565 2.825532 AGTTTTCTTGCTTGTGGTGTGT 59.174 40.909 0.00 0.00 0.00 3.72
565 566 3.258123 AGTTTTCTTGCTTGTGGTGTGTT 59.742 39.130 0.00 0.00 0.00 3.32
566 567 3.951775 TTTCTTGCTTGTGGTGTGTTT 57.048 38.095 0.00 0.00 0.00 2.83
567 568 3.951775 TTCTTGCTTGTGGTGTGTTTT 57.048 38.095 0.00 0.00 0.00 2.43
568 569 3.229276 TCTTGCTTGTGGTGTGTTTTG 57.771 42.857 0.00 0.00 0.00 2.44
569 570 2.094286 TCTTGCTTGTGGTGTGTTTTGG 60.094 45.455 0.00 0.00 0.00 3.28
570 571 0.534412 TGCTTGTGGTGTGTTTTGGG 59.466 50.000 0.00 0.00 0.00 4.12
571 572 0.820871 GCTTGTGGTGTGTTTTGGGA 59.179 50.000 0.00 0.00 0.00 4.37
572 573 1.205893 GCTTGTGGTGTGTTTTGGGAA 59.794 47.619 0.00 0.00 0.00 3.97
573 574 2.738321 GCTTGTGGTGTGTTTTGGGAAG 60.738 50.000 0.00 0.00 0.00 3.46
574 575 2.223803 TGTGGTGTGTTTTGGGAAGT 57.776 45.000 0.00 0.00 0.00 3.01
575 576 2.530701 TGTGGTGTGTTTTGGGAAGTT 58.469 42.857 0.00 0.00 0.00 2.66
576 577 2.900546 TGTGGTGTGTTTTGGGAAGTTT 59.099 40.909 0.00 0.00 0.00 2.66
577 578 3.258228 GTGGTGTGTTTTGGGAAGTTTG 58.742 45.455 0.00 0.00 0.00 2.93
578 579 2.900546 TGGTGTGTTTTGGGAAGTTTGT 59.099 40.909 0.00 0.00 0.00 2.83
579 580 4.082136 GTGGTGTGTTTTGGGAAGTTTGTA 60.082 41.667 0.00 0.00 0.00 2.41
580 581 4.527038 TGGTGTGTTTTGGGAAGTTTGTAA 59.473 37.500 0.00 0.00 0.00 2.41
581 582 5.011738 TGGTGTGTTTTGGGAAGTTTGTAAA 59.988 36.000 0.00 0.00 0.00 2.01
582 583 5.579119 GGTGTGTTTTGGGAAGTTTGTAAAG 59.421 40.000 0.00 0.00 0.00 1.85
583 584 5.579119 GTGTGTTTTGGGAAGTTTGTAAAGG 59.421 40.000 0.00 0.00 0.00 3.11
584 585 5.246429 TGTGTTTTGGGAAGTTTGTAAAGGT 59.754 36.000 0.00 0.00 0.00 3.50
585 586 5.579119 GTGTTTTGGGAAGTTTGTAAAGGTG 59.421 40.000 0.00 0.00 0.00 4.00
586 587 5.246429 TGTTTTGGGAAGTTTGTAAAGGTGT 59.754 36.000 0.00 0.00 0.00 4.16
587 588 4.993029 TTGGGAAGTTTGTAAAGGTGTG 57.007 40.909 0.00 0.00 0.00 3.82
588 589 3.292460 TGGGAAGTTTGTAAAGGTGTGG 58.708 45.455 0.00 0.00 0.00 4.17
589 590 3.293337 GGGAAGTTTGTAAAGGTGTGGT 58.707 45.455 0.00 0.00 0.00 4.16
590 591 3.067601 GGGAAGTTTGTAAAGGTGTGGTG 59.932 47.826 0.00 0.00 0.00 4.17
591 592 3.697542 GGAAGTTTGTAAAGGTGTGGTGT 59.302 43.478 0.00 0.00 0.00 4.16
592 593 4.439563 GGAAGTTTGTAAAGGTGTGGTGTG 60.440 45.833 0.00 0.00 0.00 3.82
593 594 3.958018 AGTTTGTAAAGGTGTGGTGTGA 58.042 40.909 0.00 0.00 0.00 3.58
594 595 3.945285 AGTTTGTAAAGGTGTGGTGTGAG 59.055 43.478 0.00 0.00 0.00 3.51
595 596 1.961793 TGTAAAGGTGTGGTGTGAGC 58.038 50.000 0.00 0.00 0.00 4.26
596 597 1.488812 TGTAAAGGTGTGGTGTGAGCT 59.511 47.619 0.00 0.00 0.00 4.09
597 598 2.092646 TGTAAAGGTGTGGTGTGAGCTT 60.093 45.455 0.00 0.00 0.00 3.74
598 599 1.680338 AAAGGTGTGGTGTGAGCTTC 58.320 50.000 0.00 0.00 0.00 3.86
599 600 0.546122 AAGGTGTGGTGTGAGCTTCA 59.454 50.000 0.00 0.00 0.00 3.02
600 601 0.546122 AGGTGTGGTGTGAGCTTCAA 59.454 50.000 0.00 0.00 0.00 2.69
601 602 0.947244 GGTGTGGTGTGAGCTTCAAG 59.053 55.000 0.00 0.00 0.00 3.02
602 603 1.668419 GTGTGGTGTGAGCTTCAAGT 58.332 50.000 0.00 0.00 0.00 3.16
603 604 1.331756 GTGTGGTGTGAGCTTCAAGTG 59.668 52.381 0.00 0.00 0.00 3.16
604 605 0.947244 GTGGTGTGAGCTTCAAGTGG 59.053 55.000 0.00 0.00 0.00 4.00
605 606 0.179020 TGGTGTGAGCTTCAAGTGGG 60.179 55.000 0.00 0.00 0.00 4.61
606 607 0.179018 GGTGTGAGCTTCAAGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
607 608 0.947244 GTGTGAGCTTCAAGTGGGTG 59.053 55.000 0.00 0.00 0.00 4.61
608 609 0.836606 TGTGAGCTTCAAGTGGGTGA 59.163 50.000 0.00 0.00 0.00 4.02
609 610 1.230324 GTGAGCTTCAAGTGGGTGAC 58.770 55.000 0.00 0.00 0.00 3.67
610 611 1.131638 TGAGCTTCAAGTGGGTGACT 58.868 50.000 0.00 0.00 35.94 3.41
611 612 1.070758 TGAGCTTCAAGTGGGTGACTC 59.929 52.381 0.00 0.00 31.73 3.36
612 613 1.070758 GAGCTTCAAGTGGGTGACTCA 59.929 52.381 0.00 0.00 31.73 3.41
613 614 1.490490 AGCTTCAAGTGGGTGACTCAA 59.510 47.619 0.00 0.00 31.73 3.02
614 615 2.092429 AGCTTCAAGTGGGTGACTCAAA 60.092 45.455 0.00 0.00 31.73 2.69
615 616 2.291741 GCTTCAAGTGGGTGACTCAAAG 59.708 50.000 0.00 0.00 31.73 2.77
616 617 2.638480 TCAAGTGGGTGACTCAAAGG 57.362 50.000 0.00 0.00 31.73 3.11
617 618 1.142870 TCAAGTGGGTGACTCAAAGGG 59.857 52.381 0.00 0.00 31.73 3.95
618 619 1.142870 CAAGTGGGTGACTCAAAGGGA 59.857 52.381 0.00 0.00 31.73 4.20
633 634 5.994250 TCAAAGGGAGAATAAGGTGAGATG 58.006 41.667 0.00 0.00 0.00 2.90
634 635 4.429854 AAGGGAGAATAAGGTGAGATGC 57.570 45.455 0.00 0.00 0.00 3.91
635 636 3.663198 AGGGAGAATAAGGTGAGATGCT 58.337 45.455 0.00 0.00 0.00 3.79
636 637 4.043596 AGGGAGAATAAGGTGAGATGCTT 58.956 43.478 0.00 0.00 0.00 3.91
637 638 4.133078 GGGAGAATAAGGTGAGATGCTTG 58.867 47.826 0.00 0.00 0.00 4.01
638 639 4.133078 GGAGAATAAGGTGAGATGCTTGG 58.867 47.826 0.00 0.00 0.00 3.61
639 640 4.384647 GGAGAATAAGGTGAGATGCTTGGT 60.385 45.833 0.00 0.00 0.00 3.67
640 641 4.521146 AGAATAAGGTGAGATGCTTGGTG 58.479 43.478 0.00 0.00 0.00 4.17
641 642 2.787473 TAAGGTGAGATGCTTGGTGG 57.213 50.000 0.00 0.00 0.00 4.61
642 643 0.610232 AAGGTGAGATGCTTGGTGGC 60.610 55.000 0.00 0.00 0.00 5.01
643 644 2.401766 GGTGAGATGCTTGGTGGCG 61.402 63.158 0.00 0.00 34.52 5.69
644 645 2.747460 TGAGATGCTTGGTGGCGC 60.747 61.111 0.00 0.00 34.52 6.53
645 646 2.437359 GAGATGCTTGGTGGCGCT 60.437 61.111 7.64 0.00 34.52 5.92
646 647 2.437359 AGATGCTTGGTGGCGCTC 60.437 61.111 7.64 0.23 34.52 5.03
647 648 3.512516 GATGCTTGGTGGCGCTCC 61.513 66.667 7.64 11.37 34.52 4.70
648 649 4.349503 ATGCTTGGTGGCGCTCCA 62.350 61.111 17.84 17.84 40.85 3.86
651 652 3.052082 CTTGGTGGCGCTCCAGTG 61.052 66.667 19.95 14.77 44.48 3.66
659 660 3.749981 CGCTCCAGTGCTTTGGTT 58.250 55.556 6.90 0.00 39.35 3.67
660 661 2.032981 CGCTCCAGTGCTTTGGTTT 58.967 52.632 6.90 0.00 39.35 3.27
661 662 0.040067 CGCTCCAGTGCTTTGGTTTC 60.040 55.000 6.90 0.00 39.35 2.78
662 663 0.040067 GCTCCAGTGCTTTGGTTTCG 60.040 55.000 6.90 0.00 39.35 3.46
663 664 0.593128 CTCCAGTGCTTTGGTTTCGG 59.407 55.000 6.90 0.00 39.35 4.30
664 665 1.007387 CCAGTGCTTTGGTTTCGGC 60.007 57.895 0.00 0.00 33.38 5.54
665 666 1.732917 CAGTGCTTTGGTTTCGGCA 59.267 52.632 0.00 0.00 0.00 5.69
666 667 0.314935 CAGTGCTTTGGTTTCGGCAT 59.685 50.000 0.00 0.00 37.05 4.40
667 668 0.598065 AGTGCTTTGGTTTCGGCATC 59.402 50.000 0.00 0.00 37.05 3.91
668 669 0.729140 GTGCTTTGGTTTCGGCATCG 60.729 55.000 0.00 0.00 37.05 3.84
669 670 1.154035 GCTTTGGTTTCGGCATCGG 60.154 57.895 0.00 0.00 36.95 4.18
670 671 1.154035 CTTTGGTTTCGGCATCGGC 60.154 57.895 0.00 0.00 40.13 5.54
671 672 1.861542 CTTTGGTTTCGGCATCGGCA 61.862 55.000 0.00 0.00 43.71 5.69
672 673 2.136196 TTTGGTTTCGGCATCGGCAC 62.136 55.000 0.00 0.00 43.71 5.01
673 674 3.053291 GGTTTCGGCATCGGCACA 61.053 61.111 0.00 0.00 43.71 4.57
674 675 2.622011 GGTTTCGGCATCGGCACAA 61.622 57.895 0.00 0.00 43.71 3.33
675 676 1.442017 GTTTCGGCATCGGCACAAC 60.442 57.895 0.00 0.00 43.71 3.32
696 697 9.507280 CACAACCTTGATTAGTGCAATATTTAG 57.493 33.333 0.00 0.00 0.00 1.85
752 754 0.754472 TCCCTCCTCGAAACAAACGT 59.246 50.000 0.00 0.00 0.00 3.99
791 793 3.493176 GCACTCCAAAAGGTGAGCAAAAT 60.493 43.478 0.00 0.00 35.69 1.82
904 922 2.226330 GCCATGCCGGTGTTATATCAA 58.774 47.619 1.90 0.00 36.97 2.57
908 926 4.261155 CCATGCCGGTGTTATATCAAACTG 60.261 45.833 1.90 0.00 0.00 3.16
931 949 4.504132 GAGTCACTCGGCATGACC 57.496 61.111 0.00 0.00 46.38 4.02
1050 2181 1.674764 ATCAGCTCCTCGTGCTCCTG 61.675 60.000 0.00 0.00 38.92 3.86
1072 2203 2.048222 TTCTCTTGTGCGGCCTCG 60.048 61.111 0.00 0.00 39.81 4.63
1188 2319 4.736896 AACGCCGACGCCTTCTCC 62.737 66.667 0.00 0.00 45.53 3.71
1538 2675 0.736636 CGCCACGTCATACAGAGGTA 59.263 55.000 0.00 0.00 43.07 3.08
1647 2787 2.734591 GCCATCGATGTCCGGCTA 59.265 61.111 23.27 0.00 41.50 3.93
1818 2970 2.738643 CGACGAGATGGTGCACCTAATT 60.739 50.000 34.75 18.42 36.82 1.40
2962 6091 6.806751 TCTGTTAATTATGAAGCGAGCTACT 58.193 36.000 0.00 0.00 0.00 2.57
2963 6092 7.265673 TCTGTTAATTATGAAGCGAGCTACTT 58.734 34.615 0.00 1.18 0.00 2.24
3045 6182 3.433882 GCCCTAGCCGAGATCTATAGCTA 60.434 52.174 16.03 16.03 35.03 3.32
3153 6293 4.846779 TCCTTTAATGTTGGTGTCTTGC 57.153 40.909 0.00 0.00 0.00 4.01
3253 6393 0.996762 TCTGTGGGGTTTTGGTCCCT 60.997 55.000 0.00 0.00 44.07 4.20
3305 6445 4.950475 TGTCAAGTTTGGTGTGGTCATTAA 59.050 37.500 0.00 0.00 0.00 1.40
3318 6458 7.255451 GGTGTGGTCATTAATTCTCAAGTTTCA 60.255 37.037 0.00 0.00 0.00 2.69
3343 6483 5.421277 TCTTTGGTTCTCACGAACTTGTTA 58.579 37.500 5.34 0.00 46.84 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.091665 CCCACCCTCCATTAGATGCTTT 60.092 50.000 0.00 0.00 0.00 3.51
1 2 1.496429 CCCACCCTCCATTAGATGCTT 59.504 52.381 0.00 0.00 0.00 3.91
2 3 1.143813 CCCACCCTCCATTAGATGCT 58.856 55.000 0.00 0.00 0.00 3.79
3 4 0.111253 CCCCACCCTCCATTAGATGC 59.889 60.000 0.00 0.00 0.00 3.91
4 5 1.522900 ACCCCACCCTCCATTAGATG 58.477 55.000 0.00 0.00 0.00 2.90
5 6 2.527057 TCTACCCCACCCTCCATTAGAT 59.473 50.000 0.00 0.00 0.00 1.98
6 7 1.941682 TCTACCCCACCCTCCATTAGA 59.058 52.381 0.00 0.00 0.00 2.10
8 9 2.701551 CATCTACCCCACCCTCCATTA 58.298 52.381 0.00 0.00 0.00 1.90
9 10 1.522900 CATCTACCCCACCCTCCATT 58.477 55.000 0.00 0.00 0.00 3.16
10 11 1.062488 GCATCTACCCCACCCTCCAT 61.062 60.000 0.00 0.00 0.00 3.41
11 12 1.692749 GCATCTACCCCACCCTCCA 60.693 63.158 0.00 0.00 0.00 3.86
12 13 0.988678 AAGCATCTACCCCACCCTCC 60.989 60.000 0.00 0.00 0.00 4.30
13 14 0.919710 AAAGCATCTACCCCACCCTC 59.080 55.000 0.00 0.00 0.00 4.30
14 15 0.625849 CAAAGCATCTACCCCACCCT 59.374 55.000 0.00 0.00 0.00 4.34
15 16 0.331616 ACAAAGCATCTACCCCACCC 59.668 55.000 0.00 0.00 0.00 4.61
16 17 1.004277 TCACAAAGCATCTACCCCACC 59.996 52.381 0.00 0.00 0.00 4.61
17 18 2.489938 TCACAAAGCATCTACCCCAC 57.510 50.000 0.00 0.00 0.00 4.61
18 19 3.737559 AATCACAAAGCATCTACCCCA 57.262 42.857 0.00 0.00 0.00 4.96
19 20 3.763897 ACAAATCACAAAGCATCTACCCC 59.236 43.478 0.00 0.00 0.00 4.95
20 21 6.509418 TTACAAATCACAAAGCATCTACCC 57.491 37.500 0.00 0.00 0.00 3.69
21 22 7.009540 GCATTTACAAATCACAAAGCATCTACC 59.990 37.037 0.00 0.00 0.00 3.18
22 23 7.009540 GGCATTTACAAATCACAAAGCATCTAC 59.990 37.037 0.00 0.00 0.00 2.59
23 24 7.035004 GGCATTTACAAATCACAAAGCATCTA 58.965 34.615 0.00 0.00 0.00 1.98
24 25 5.870978 GGCATTTACAAATCACAAAGCATCT 59.129 36.000 0.00 0.00 0.00 2.90
25 26 5.638657 TGGCATTTACAAATCACAAAGCATC 59.361 36.000 0.00 0.00 0.00 3.91
26 27 5.409214 GTGGCATTTACAAATCACAAAGCAT 59.591 36.000 0.00 0.00 0.00 3.79
27 28 4.749099 GTGGCATTTACAAATCACAAAGCA 59.251 37.500 0.00 0.00 0.00 3.91
28 29 4.143347 CGTGGCATTTACAAATCACAAAGC 60.143 41.667 0.00 0.00 0.00 3.51
29 30 4.981674 ACGTGGCATTTACAAATCACAAAG 59.018 37.500 0.00 1.71 0.00 2.77
30 31 4.742167 CACGTGGCATTTACAAATCACAAA 59.258 37.500 7.95 0.00 0.00 2.83
31 32 4.202060 ACACGTGGCATTTACAAATCACAA 60.202 37.500 21.57 0.00 0.00 3.33
32 33 3.316588 ACACGTGGCATTTACAAATCACA 59.683 39.130 21.57 0.00 0.00 3.58
33 34 3.896122 ACACGTGGCATTTACAAATCAC 58.104 40.909 21.57 0.00 0.00 3.06
34 35 3.565902 TGACACGTGGCATTTACAAATCA 59.434 39.130 23.03 6.48 0.00 2.57
35 36 4.153958 TGACACGTGGCATTTACAAATC 57.846 40.909 23.03 3.54 0.00 2.17
36 37 4.380444 GGATGACACGTGGCATTTACAAAT 60.380 41.667 36.07 14.34 45.42 2.32
37 38 3.057876 GGATGACACGTGGCATTTACAAA 60.058 43.478 36.07 7.37 45.42 2.83
38 39 2.486203 GGATGACACGTGGCATTTACAA 59.514 45.455 36.07 8.22 45.42 2.41
39 40 2.080693 GGATGACACGTGGCATTTACA 58.919 47.619 36.07 9.07 45.42 2.41
40 41 2.825086 GGATGACACGTGGCATTTAC 57.175 50.000 36.07 24.74 45.42 2.01
350 351 9.753674 ATCAAGATTTTAGGGTGTAGAAATGAA 57.246 29.630 0.00 0.00 0.00 2.57
351 352 9.753674 AATCAAGATTTTAGGGTGTAGAAATGA 57.246 29.630 0.00 0.00 0.00 2.57
355 356 9.886132 GAGTAATCAAGATTTTAGGGTGTAGAA 57.114 33.333 0.02 0.00 32.50 2.10
356 357 8.483758 GGAGTAATCAAGATTTTAGGGTGTAGA 58.516 37.037 0.02 0.00 32.50 2.59
357 358 8.265055 TGGAGTAATCAAGATTTTAGGGTGTAG 58.735 37.037 0.02 0.00 32.50 2.74
358 359 8.153221 TGGAGTAATCAAGATTTTAGGGTGTA 57.847 34.615 0.02 0.00 32.50 2.90
359 360 7.027874 TGGAGTAATCAAGATTTTAGGGTGT 57.972 36.000 0.02 0.00 32.50 4.16
360 361 7.415653 GCTTGGAGTAATCAAGATTTTAGGGTG 60.416 40.741 7.86 0.00 42.94 4.61
361 362 6.603599 GCTTGGAGTAATCAAGATTTTAGGGT 59.396 38.462 7.86 0.00 42.94 4.34
362 363 6.039829 GGCTTGGAGTAATCAAGATTTTAGGG 59.960 42.308 7.86 0.00 42.94 3.53
363 364 6.039829 GGGCTTGGAGTAATCAAGATTTTAGG 59.960 42.308 7.86 0.00 42.94 2.69
364 365 6.603201 TGGGCTTGGAGTAATCAAGATTTTAG 59.397 38.462 7.86 0.00 42.94 1.85
365 366 6.489603 TGGGCTTGGAGTAATCAAGATTTTA 58.510 36.000 7.86 0.00 42.94 1.52
366 367 5.332743 TGGGCTTGGAGTAATCAAGATTTT 58.667 37.500 7.86 0.00 42.94 1.82
367 368 4.934356 TGGGCTTGGAGTAATCAAGATTT 58.066 39.130 7.86 0.00 42.94 2.17
368 369 4.591321 TGGGCTTGGAGTAATCAAGATT 57.409 40.909 7.86 0.52 42.94 2.40
369 370 4.166725 TGATGGGCTTGGAGTAATCAAGAT 59.833 41.667 7.86 0.00 42.94 2.40
370 371 3.523157 TGATGGGCTTGGAGTAATCAAGA 59.477 43.478 7.86 0.00 42.94 3.02
371 372 3.889815 TGATGGGCTTGGAGTAATCAAG 58.110 45.455 0.00 0.00 43.10 3.02
372 373 4.166725 AGATGATGGGCTTGGAGTAATCAA 59.833 41.667 0.00 0.00 0.00 2.57
373 374 3.718434 AGATGATGGGCTTGGAGTAATCA 59.282 43.478 0.00 0.00 0.00 2.57
374 375 4.202398 TGAGATGATGGGCTTGGAGTAATC 60.202 45.833 0.00 0.00 0.00 1.75
375 376 3.718434 TGAGATGATGGGCTTGGAGTAAT 59.282 43.478 0.00 0.00 0.00 1.89
376 377 3.114606 TGAGATGATGGGCTTGGAGTAA 58.885 45.455 0.00 0.00 0.00 2.24
377 378 2.763039 TGAGATGATGGGCTTGGAGTA 58.237 47.619 0.00 0.00 0.00 2.59
378 379 1.588239 TGAGATGATGGGCTTGGAGT 58.412 50.000 0.00 0.00 0.00 3.85
379 380 2.723322 TTGAGATGATGGGCTTGGAG 57.277 50.000 0.00 0.00 0.00 3.86
380 381 3.675348 ATTTGAGATGATGGGCTTGGA 57.325 42.857 0.00 0.00 0.00 3.53
381 382 3.069158 GGAATTTGAGATGATGGGCTTGG 59.931 47.826 0.00 0.00 0.00 3.61
382 383 3.702548 TGGAATTTGAGATGATGGGCTTG 59.297 43.478 0.00 0.00 0.00 4.01
383 384 3.703052 GTGGAATTTGAGATGATGGGCTT 59.297 43.478 0.00 0.00 0.00 4.35
384 385 3.294214 GTGGAATTTGAGATGATGGGCT 58.706 45.455 0.00 0.00 0.00 5.19
385 386 2.363359 GGTGGAATTTGAGATGATGGGC 59.637 50.000 0.00 0.00 0.00 5.36
386 387 3.634504 TGGTGGAATTTGAGATGATGGG 58.365 45.455 0.00 0.00 0.00 4.00
387 388 6.066690 AGTATGGTGGAATTTGAGATGATGG 58.933 40.000 0.00 0.00 0.00 3.51
388 389 7.578310 AAGTATGGTGGAATTTGAGATGATG 57.422 36.000 0.00 0.00 0.00 3.07
389 390 9.347240 CTAAAGTATGGTGGAATTTGAGATGAT 57.653 33.333 0.00 0.00 0.00 2.45
390 391 7.775093 CCTAAAGTATGGTGGAATTTGAGATGA 59.225 37.037 0.00 0.00 0.00 2.92
391 392 7.775093 TCCTAAAGTATGGTGGAATTTGAGATG 59.225 37.037 0.00 0.00 0.00 2.90
392 393 7.872138 TCCTAAAGTATGGTGGAATTTGAGAT 58.128 34.615 0.00 0.00 0.00 2.75
393 394 7.265599 TCCTAAAGTATGGTGGAATTTGAGA 57.734 36.000 0.00 0.00 0.00 3.27
394 395 8.525290 AATCCTAAAGTATGGTGGAATTTGAG 57.475 34.615 0.00 0.00 0.00 3.02
395 396 8.748412 CAAATCCTAAAGTATGGTGGAATTTGA 58.252 33.333 0.00 0.00 33.03 2.69
396 397 7.981225 CCAAATCCTAAAGTATGGTGGAATTTG 59.019 37.037 0.00 0.00 32.19 2.32
397 398 7.898636 TCCAAATCCTAAAGTATGGTGGAATTT 59.101 33.333 0.00 0.00 29.89 1.82
398 399 7.418378 TCCAAATCCTAAAGTATGGTGGAATT 58.582 34.615 0.00 0.00 29.89 2.17
399 400 6.980577 TCCAAATCCTAAAGTATGGTGGAAT 58.019 36.000 0.00 0.00 29.89 3.01
400 401 6.395780 TCCAAATCCTAAAGTATGGTGGAA 57.604 37.500 0.00 0.00 29.89 3.53
401 402 6.216662 TCTTCCAAATCCTAAAGTATGGTGGA 59.783 38.462 0.00 0.00 0.00 4.02
402 403 6.423182 TCTTCCAAATCCTAAAGTATGGTGG 58.577 40.000 0.00 0.00 0.00 4.61
403 404 6.543831 CCTCTTCCAAATCCTAAAGTATGGTG 59.456 42.308 0.00 0.00 0.00 4.17
404 405 6.217693 ACCTCTTCCAAATCCTAAAGTATGGT 59.782 38.462 0.00 0.00 0.00 3.55
405 406 6.663734 ACCTCTTCCAAATCCTAAAGTATGG 58.336 40.000 0.00 0.00 0.00 2.74
406 407 7.829211 TGAACCTCTTCCAAATCCTAAAGTATG 59.171 37.037 0.00 0.00 0.00 2.39
407 408 7.829706 GTGAACCTCTTCCAAATCCTAAAGTAT 59.170 37.037 0.00 0.00 0.00 2.12
408 409 7.166167 GTGAACCTCTTCCAAATCCTAAAGTA 58.834 38.462 0.00 0.00 0.00 2.24
409 410 6.004574 GTGAACCTCTTCCAAATCCTAAAGT 58.995 40.000 0.00 0.00 0.00 2.66
410 411 5.416013 GGTGAACCTCTTCCAAATCCTAAAG 59.584 44.000 0.00 0.00 0.00 1.85
411 412 5.074515 AGGTGAACCTCTTCCAAATCCTAAA 59.925 40.000 0.00 0.00 44.77 1.85
412 413 4.601857 AGGTGAACCTCTTCCAAATCCTAA 59.398 41.667 0.00 0.00 44.77 2.69
413 414 4.019321 CAGGTGAACCTCTTCCAAATCCTA 60.019 45.833 0.00 0.00 46.65 2.94
414 415 2.989571 AGGTGAACCTCTTCCAAATCCT 59.010 45.455 0.00 0.00 44.77 3.24
415 416 3.084786 CAGGTGAACCTCTTCCAAATCC 58.915 50.000 0.00 0.00 46.65 3.01
416 417 4.021102 TCAGGTGAACCTCTTCCAAATC 57.979 45.455 0.00 0.00 46.65 2.17
417 418 4.290722 AGATCAGGTGAACCTCTTCCAAAT 59.709 41.667 0.00 0.00 46.65 2.32
418 419 3.652869 AGATCAGGTGAACCTCTTCCAAA 59.347 43.478 0.00 0.00 46.65 3.28
419 420 3.251484 AGATCAGGTGAACCTCTTCCAA 58.749 45.455 0.00 0.00 46.65 3.53
420 421 2.907892 AGATCAGGTGAACCTCTTCCA 58.092 47.619 0.00 0.00 46.65 3.53
421 422 3.769844 TGTAGATCAGGTGAACCTCTTCC 59.230 47.826 0.00 0.00 46.65 3.46
422 423 5.606348 ATGTAGATCAGGTGAACCTCTTC 57.394 43.478 0.00 0.00 46.65 2.87
423 424 6.380079 AAATGTAGATCAGGTGAACCTCTT 57.620 37.500 0.00 0.00 46.65 2.85
424 425 5.104735 GGAAATGTAGATCAGGTGAACCTCT 60.105 44.000 0.00 0.00 46.65 3.69
425 426 5.119694 GGAAATGTAGATCAGGTGAACCTC 58.880 45.833 0.00 0.00 46.65 3.85
427 428 3.871594 CGGAAATGTAGATCAGGTGAACC 59.128 47.826 0.00 0.00 0.00 3.62
428 429 3.309954 GCGGAAATGTAGATCAGGTGAAC 59.690 47.826 0.00 0.00 0.00 3.18
429 430 3.531538 GCGGAAATGTAGATCAGGTGAA 58.468 45.455 0.00 0.00 0.00 3.18
430 431 2.158957 GGCGGAAATGTAGATCAGGTGA 60.159 50.000 0.00 0.00 0.00 4.02
431 432 2.213499 GGCGGAAATGTAGATCAGGTG 58.787 52.381 0.00 0.00 0.00 4.00
432 433 1.837439 TGGCGGAAATGTAGATCAGGT 59.163 47.619 0.00 0.00 0.00 4.00
433 434 2.620251 TGGCGGAAATGTAGATCAGG 57.380 50.000 0.00 0.00 0.00 3.86
434 435 4.023707 GGATTTGGCGGAAATGTAGATCAG 60.024 45.833 0.00 0.00 34.18 2.90
435 436 3.882888 GGATTTGGCGGAAATGTAGATCA 59.117 43.478 0.00 0.00 34.18 2.92
436 437 3.882888 TGGATTTGGCGGAAATGTAGATC 59.117 43.478 0.00 0.00 34.18 2.75
437 438 3.897239 TGGATTTGGCGGAAATGTAGAT 58.103 40.909 0.00 0.00 34.18 1.98
438 439 3.358111 TGGATTTGGCGGAAATGTAGA 57.642 42.857 0.00 0.00 34.18 2.59
439 440 4.654091 AATGGATTTGGCGGAAATGTAG 57.346 40.909 0.00 0.00 34.18 2.74
440 441 4.753233 CAAATGGATTTGGCGGAAATGTA 58.247 39.130 4.44 0.00 42.51 2.29
441 442 3.598299 CAAATGGATTTGGCGGAAATGT 58.402 40.909 4.44 0.00 42.51 2.71
452 453 7.774625 ACTTGTTGGAAAATCACAAATGGATTT 59.225 29.630 0.00 0.00 44.52 2.17
453 454 7.281841 ACTTGTTGGAAAATCACAAATGGATT 58.718 30.769 0.00 0.00 36.57 3.01
454 455 6.829849 ACTTGTTGGAAAATCACAAATGGAT 58.170 32.000 0.00 0.00 0.00 3.41
455 456 6.232581 ACTTGTTGGAAAATCACAAATGGA 57.767 33.333 0.00 0.00 0.00 3.41
456 457 6.538021 TGAACTTGTTGGAAAATCACAAATGG 59.462 34.615 0.00 0.00 0.00 3.16
457 458 7.536895 TGAACTTGTTGGAAAATCACAAATG 57.463 32.000 0.00 0.00 0.00 2.32
458 459 8.614346 CAATGAACTTGTTGGAAAATCACAAAT 58.386 29.630 0.00 0.00 0.00 2.32
459 460 7.605691 ACAATGAACTTGTTGGAAAATCACAAA 59.394 29.630 0.00 0.00 45.98 2.83
460 461 7.102346 ACAATGAACTTGTTGGAAAATCACAA 58.898 30.769 0.00 0.00 45.98 3.33
461 462 6.638610 ACAATGAACTTGTTGGAAAATCACA 58.361 32.000 0.00 0.00 45.98 3.58
475 476 8.686334 AGAATAACAAGTGTTGACAATGAACTT 58.314 29.630 6.94 7.63 38.90 2.66
476 477 8.225603 AGAATAACAAGTGTTGACAATGAACT 57.774 30.769 6.94 0.00 38.90 3.01
477 478 8.745837 CAAGAATAACAAGTGTTGACAATGAAC 58.254 33.333 6.94 0.00 38.90 3.18
478 479 8.681806 TCAAGAATAACAAGTGTTGACAATGAA 58.318 29.630 6.94 0.00 38.90 2.57
479 480 8.219546 TCAAGAATAACAAGTGTTGACAATGA 57.780 30.769 6.94 3.95 38.90 2.57
480 481 8.854979 TTCAAGAATAACAAGTGTTGACAATG 57.145 30.769 6.94 1.88 38.90 2.82
487 488 9.927668 CCCAAATATTCAAGAATAACAAGTGTT 57.072 29.630 6.61 1.75 41.73 3.32
488 489 8.034804 GCCCAAATATTCAAGAATAACAAGTGT 58.965 33.333 6.61 0.00 36.90 3.55
489 490 8.253113 AGCCCAAATATTCAAGAATAACAAGTG 58.747 33.333 6.61 2.19 36.90 3.16
490 491 8.366359 AGCCCAAATATTCAAGAATAACAAGT 57.634 30.769 6.61 0.00 36.90 3.16
491 492 7.922811 GGAGCCCAAATATTCAAGAATAACAAG 59.077 37.037 6.61 0.00 36.90 3.16
492 493 7.619302 AGGAGCCCAAATATTCAAGAATAACAA 59.381 33.333 6.61 0.00 36.90 2.83
493 494 7.125391 AGGAGCCCAAATATTCAAGAATAACA 58.875 34.615 6.61 0.00 36.90 2.41
494 495 7.588497 AGGAGCCCAAATATTCAAGAATAAC 57.412 36.000 6.61 0.00 36.90 1.89
495 496 7.444183 CGTAGGAGCCCAAATATTCAAGAATAA 59.556 37.037 6.61 0.00 36.90 1.40
496 497 6.934645 CGTAGGAGCCCAAATATTCAAGAATA 59.065 38.462 5.09 5.09 37.64 1.75
497 498 5.765182 CGTAGGAGCCCAAATATTCAAGAAT 59.235 40.000 0.52 0.52 34.93 2.40
498 499 5.123227 CGTAGGAGCCCAAATATTCAAGAA 58.877 41.667 0.00 0.00 0.00 2.52
499 500 4.163458 ACGTAGGAGCCCAAATATTCAAGA 59.837 41.667 0.00 0.00 0.00 3.02
500 501 4.273480 CACGTAGGAGCCCAAATATTCAAG 59.727 45.833 0.00 0.00 0.00 3.02
501 502 4.196193 CACGTAGGAGCCCAAATATTCAA 58.804 43.478 0.00 0.00 0.00 2.69
502 503 3.433031 CCACGTAGGAGCCCAAATATTCA 60.433 47.826 0.00 0.00 41.22 2.57
503 504 3.139077 CCACGTAGGAGCCCAAATATTC 58.861 50.000 0.00 0.00 41.22 1.75
504 505 2.508300 ACCACGTAGGAGCCCAAATATT 59.492 45.455 10.46 0.00 41.22 1.28
505 506 2.124411 ACCACGTAGGAGCCCAAATAT 58.876 47.619 10.46 0.00 41.22 1.28
506 507 1.575419 ACCACGTAGGAGCCCAAATA 58.425 50.000 10.46 0.00 41.22 1.40
507 508 1.485066 CTACCACGTAGGAGCCCAAAT 59.515 52.381 10.46 0.00 41.22 2.32
508 509 0.899720 CTACCACGTAGGAGCCCAAA 59.100 55.000 10.46 0.00 41.22 3.28
509 510 2.587080 CTACCACGTAGGAGCCCAA 58.413 57.895 10.46 0.00 41.22 4.12
510 511 4.349682 CTACCACGTAGGAGCCCA 57.650 61.111 10.46 0.00 41.22 5.36
517 518 0.822164 CCTTGACCCCTACCACGTAG 59.178 60.000 0.00 0.00 36.04 3.51
518 519 1.259840 GCCTTGACCCCTACCACGTA 61.260 60.000 0.00 0.00 0.00 3.57
519 520 2.590114 GCCTTGACCCCTACCACGT 61.590 63.158 0.00 0.00 0.00 4.49
520 521 2.267961 GCCTTGACCCCTACCACG 59.732 66.667 0.00 0.00 0.00 4.94
521 522 2.267961 CGCCTTGACCCCTACCAC 59.732 66.667 0.00 0.00 0.00 4.16
522 523 3.712907 GCGCCTTGACCCCTACCA 61.713 66.667 0.00 0.00 0.00 3.25
523 524 4.832608 CGCGCCTTGACCCCTACC 62.833 72.222 0.00 0.00 0.00 3.18
524 525 4.832608 CCGCGCCTTGACCCCTAC 62.833 72.222 0.00 0.00 0.00 3.18
528 529 4.699522 ACTTCCGCGCCTTGACCC 62.700 66.667 0.00 0.00 0.00 4.46
529 530 1.792118 AAAACTTCCGCGCCTTGACC 61.792 55.000 0.00 0.00 0.00 4.02
530 531 0.385598 GAAAACTTCCGCGCCTTGAC 60.386 55.000 0.00 0.00 0.00 3.18
531 532 0.534203 AGAAAACTTCCGCGCCTTGA 60.534 50.000 0.00 0.00 0.00 3.02
532 533 0.310854 AAGAAAACTTCCGCGCCTTG 59.689 50.000 0.00 0.00 0.00 3.61
533 534 0.310854 CAAGAAAACTTCCGCGCCTT 59.689 50.000 0.00 0.00 0.00 4.35
534 535 1.949257 CAAGAAAACTTCCGCGCCT 59.051 52.632 0.00 0.00 0.00 5.52
535 536 1.729484 GCAAGAAAACTTCCGCGCC 60.729 57.895 0.00 0.00 0.00 6.53
536 537 0.317854 AAGCAAGAAAACTTCCGCGC 60.318 50.000 0.00 0.00 34.71 6.86
537 538 1.268539 ACAAGCAAGAAAACTTCCGCG 60.269 47.619 0.00 0.00 34.71 6.46
538 539 2.119457 CACAAGCAAGAAAACTTCCGC 58.881 47.619 0.00 0.00 0.00 5.54
539 540 2.099098 ACCACAAGCAAGAAAACTTCCG 59.901 45.455 0.00 0.00 0.00 4.30
540 541 3.119137 ACACCACAAGCAAGAAAACTTCC 60.119 43.478 0.00 0.00 0.00 3.46
541 542 3.859386 CACACCACAAGCAAGAAAACTTC 59.141 43.478 0.00 0.00 0.00 3.01
542 543 3.258123 ACACACCACAAGCAAGAAAACTT 59.742 39.130 0.00 0.00 0.00 2.66
543 544 2.825532 ACACACCACAAGCAAGAAAACT 59.174 40.909 0.00 0.00 0.00 2.66
544 545 3.230743 ACACACCACAAGCAAGAAAAC 57.769 42.857 0.00 0.00 0.00 2.43
545 546 3.951775 AACACACCACAAGCAAGAAAA 57.048 38.095 0.00 0.00 0.00 2.29
546 547 3.951775 AAACACACCACAAGCAAGAAA 57.048 38.095 0.00 0.00 0.00 2.52
547 548 3.583806 CAAAACACACCACAAGCAAGAA 58.416 40.909 0.00 0.00 0.00 2.52
548 549 2.094286 CCAAAACACACCACAAGCAAGA 60.094 45.455 0.00 0.00 0.00 3.02
549 550 2.270047 CCAAAACACACCACAAGCAAG 58.730 47.619 0.00 0.00 0.00 4.01
550 551 1.066573 CCCAAAACACACCACAAGCAA 60.067 47.619 0.00 0.00 0.00 3.91
551 552 0.534412 CCCAAAACACACCACAAGCA 59.466 50.000 0.00 0.00 0.00 3.91
552 553 0.820871 TCCCAAAACACACCACAAGC 59.179 50.000 0.00 0.00 0.00 4.01
553 554 2.495669 ACTTCCCAAAACACACCACAAG 59.504 45.455 0.00 0.00 0.00 3.16
554 555 2.530701 ACTTCCCAAAACACACCACAA 58.469 42.857 0.00 0.00 0.00 3.33
555 556 2.223803 ACTTCCCAAAACACACCACA 57.776 45.000 0.00 0.00 0.00 4.17
556 557 3.258228 CAAACTTCCCAAAACACACCAC 58.742 45.455 0.00 0.00 0.00 4.16
557 558 2.900546 ACAAACTTCCCAAAACACACCA 59.099 40.909 0.00 0.00 0.00 4.17
558 559 3.603158 ACAAACTTCCCAAAACACACC 57.397 42.857 0.00 0.00 0.00 4.16
559 560 5.579119 CCTTTACAAACTTCCCAAAACACAC 59.421 40.000 0.00 0.00 0.00 3.82
560 561 5.246429 ACCTTTACAAACTTCCCAAAACACA 59.754 36.000 0.00 0.00 0.00 3.72
561 562 5.579119 CACCTTTACAAACTTCCCAAAACAC 59.421 40.000 0.00 0.00 0.00 3.32
562 563 5.246429 ACACCTTTACAAACTTCCCAAAACA 59.754 36.000 0.00 0.00 0.00 2.83
563 564 5.579119 CACACCTTTACAAACTTCCCAAAAC 59.421 40.000 0.00 0.00 0.00 2.43
564 565 5.337652 CCACACCTTTACAAACTTCCCAAAA 60.338 40.000 0.00 0.00 0.00 2.44
565 566 4.160626 CCACACCTTTACAAACTTCCCAAA 59.839 41.667 0.00 0.00 0.00 3.28
566 567 3.702045 CCACACCTTTACAAACTTCCCAA 59.298 43.478 0.00 0.00 0.00 4.12
567 568 3.292460 CCACACCTTTACAAACTTCCCA 58.708 45.455 0.00 0.00 0.00 4.37
568 569 3.067601 CACCACACCTTTACAAACTTCCC 59.932 47.826 0.00 0.00 0.00 3.97
569 570 3.697542 ACACCACACCTTTACAAACTTCC 59.302 43.478 0.00 0.00 0.00 3.46
570 571 4.396790 TCACACCACACCTTTACAAACTTC 59.603 41.667 0.00 0.00 0.00 3.01
571 572 4.337145 TCACACCACACCTTTACAAACTT 58.663 39.130 0.00 0.00 0.00 2.66
572 573 3.945285 CTCACACCACACCTTTACAAACT 59.055 43.478 0.00 0.00 0.00 2.66
573 574 3.488553 GCTCACACCACACCTTTACAAAC 60.489 47.826 0.00 0.00 0.00 2.93
574 575 2.685897 GCTCACACCACACCTTTACAAA 59.314 45.455 0.00 0.00 0.00 2.83
575 576 2.092646 AGCTCACACCACACCTTTACAA 60.093 45.455 0.00 0.00 0.00 2.41
576 577 1.488812 AGCTCACACCACACCTTTACA 59.511 47.619 0.00 0.00 0.00 2.41
577 578 2.256117 AGCTCACACCACACCTTTAC 57.744 50.000 0.00 0.00 0.00 2.01
578 579 2.171659 TGAAGCTCACACCACACCTTTA 59.828 45.455 0.00 0.00 0.00 1.85
579 580 1.064758 TGAAGCTCACACCACACCTTT 60.065 47.619 0.00 0.00 0.00 3.11
580 581 0.546122 TGAAGCTCACACCACACCTT 59.454 50.000 0.00 0.00 0.00 3.50
581 582 0.546122 TTGAAGCTCACACCACACCT 59.454 50.000 0.00 0.00 0.00 4.00
582 583 0.947244 CTTGAAGCTCACACCACACC 59.053 55.000 0.00 0.00 0.00 4.16
583 584 1.331756 CACTTGAAGCTCACACCACAC 59.668 52.381 0.00 0.00 0.00 3.82
584 585 1.667236 CACTTGAAGCTCACACCACA 58.333 50.000 0.00 0.00 0.00 4.17
585 586 0.947244 CCACTTGAAGCTCACACCAC 59.053 55.000 0.00 0.00 0.00 4.16
586 587 0.179020 CCCACTTGAAGCTCACACCA 60.179 55.000 0.00 0.00 0.00 4.17
587 588 0.179018 ACCCACTTGAAGCTCACACC 60.179 55.000 0.00 0.00 0.00 4.16
588 589 0.947244 CACCCACTTGAAGCTCACAC 59.053 55.000 0.00 0.00 0.00 3.82
589 590 0.836606 TCACCCACTTGAAGCTCACA 59.163 50.000 0.00 0.00 0.00 3.58
590 591 1.202698 AGTCACCCACTTGAAGCTCAC 60.203 52.381 0.00 0.00 26.56 3.51
591 592 1.070758 GAGTCACCCACTTGAAGCTCA 59.929 52.381 0.00 0.00 34.41 4.26
592 593 1.070758 TGAGTCACCCACTTGAAGCTC 59.929 52.381 0.00 0.00 34.41 4.09
593 594 1.131638 TGAGTCACCCACTTGAAGCT 58.868 50.000 0.00 0.00 34.41 3.74
594 595 1.967319 TTGAGTCACCCACTTGAAGC 58.033 50.000 0.00 0.00 34.41 3.86
595 596 2.880890 CCTTTGAGTCACCCACTTGAAG 59.119 50.000 0.00 0.00 34.41 3.02
596 597 2.422803 CCCTTTGAGTCACCCACTTGAA 60.423 50.000 0.00 0.00 34.41 2.69
597 598 1.142870 CCCTTTGAGTCACCCACTTGA 59.857 52.381 0.00 0.00 34.41 3.02
598 599 1.142870 TCCCTTTGAGTCACCCACTTG 59.857 52.381 0.00 0.00 34.41 3.16
599 600 1.421646 CTCCCTTTGAGTCACCCACTT 59.578 52.381 0.00 0.00 34.41 3.16
600 601 1.059913 CTCCCTTTGAGTCACCCACT 58.940 55.000 0.00 0.00 38.45 4.00
601 602 1.056660 TCTCCCTTTGAGTCACCCAC 58.943 55.000 0.00 0.00 42.12 4.61
602 603 1.814429 TTCTCCCTTTGAGTCACCCA 58.186 50.000 0.00 0.00 42.12 4.51
603 604 4.518249 CTTATTCTCCCTTTGAGTCACCC 58.482 47.826 0.00 0.00 42.12 4.61
604 605 4.019231 ACCTTATTCTCCCTTTGAGTCACC 60.019 45.833 0.00 0.00 42.12 4.02
605 606 4.938226 CACCTTATTCTCCCTTTGAGTCAC 59.062 45.833 0.00 0.00 42.12 3.67
606 607 4.844085 TCACCTTATTCTCCCTTTGAGTCA 59.156 41.667 0.00 0.00 42.12 3.41
607 608 5.187967 TCTCACCTTATTCTCCCTTTGAGTC 59.812 44.000 0.00 0.00 42.12 3.36
608 609 5.094387 TCTCACCTTATTCTCCCTTTGAGT 58.906 41.667 0.00 0.00 42.12 3.41
609 610 5.683876 TCTCACCTTATTCTCCCTTTGAG 57.316 43.478 0.00 0.00 42.90 3.02
610 611 5.630069 GCATCTCACCTTATTCTCCCTTTGA 60.630 44.000 0.00 0.00 0.00 2.69
611 612 4.578105 GCATCTCACCTTATTCTCCCTTTG 59.422 45.833 0.00 0.00 0.00 2.77
612 613 4.476479 AGCATCTCACCTTATTCTCCCTTT 59.524 41.667 0.00 0.00 0.00 3.11
613 614 4.043596 AGCATCTCACCTTATTCTCCCTT 58.956 43.478 0.00 0.00 0.00 3.95
614 615 3.663198 AGCATCTCACCTTATTCTCCCT 58.337 45.455 0.00 0.00 0.00 4.20
615 616 4.133078 CAAGCATCTCACCTTATTCTCCC 58.867 47.826 0.00 0.00 0.00 4.30
616 617 4.133078 CCAAGCATCTCACCTTATTCTCC 58.867 47.826 0.00 0.00 0.00 3.71
617 618 4.574013 CACCAAGCATCTCACCTTATTCTC 59.426 45.833 0.00 0.00 0.00 2.87
618 619 4.521146 CACCAAGCATCTCACCTTATTCT 58.479 43.478 0.00 0.00 0.00 2.40
619 620 3.629398 CCACCAAGCATCTCACCTTATTC 59.371 47.826 0.00 0.00 0.00 1.75
620 621 3.624777 CCACCAAGCATCTCACCTTATT 58.375 45.455 0.00 0.00 0.00 1.40
621 622 2.684927 GCCACCAAGCATCTCACCTTAT 60.685 50.000 0.00 0.00 0.00 1.73
622 623 1.340017 GCCACCAAGCATCTCACCTTA 60.340 52.381 0.00 0.00 0.00 2.69
623 624 0.610232 GCCACCAAGCATCTCACCTT 60.610 55.000 0.00 0.00 0.00 3.50
624 625 1.001641 GCCACCAAGCATCTCACCT 60.002 57.895 0.00 0.00 0.00 4.00
625 626 2.401766 CGCCACCAAGCATCTCACC 61.402 63.158 0.00 0.00 0.00 4.02
626 627 3.044059 GCGCCACCAAGCATCTCAC 62.044 63.158 0.00 0.00 0.00 3.51
627 628 2.747460 GCGCCACCAAGCATCTCA 60.747 61.111 0.00 0.00 0.00 3.27
628 629 2.437359 AGCGCCACCAAGCATCTC 60.437 61.111 2.29 0.00 35.48 2.75
629 630 2.437359 GAGCGCCACCAAGCATCT 60.437 61.111 2.29 0.00 35.48 2.90
630 631 3.512516 GGAGCGCCACCAAGCATC 61.513 66.667 14.98 0.00 35.48 3.91
631 632 4.349503 TGGAGCGCCACCAAGCAT 62.350 61.111 19.26 0.00 39.92 3.79
634 635 3.052082 CACTGGAGCGCCACCAAG 61.052 66.667 21.23 17.24 39.92 3.61
638 639 2.980233 AAAGCACTGGAGCGCCAC 60.980 61.111 4.49 0.00 39.92 5.01
639 640 2.979676 CAAAGCACTGGAGCGCCA 60.980 61.111 9.48 9.48 43.47 5.69
640 641 3.741476 CCAAAGCACTGGAGCGCC 61.741 66.667 2.29 0.00 38.96 6.53
641 642 2.075426 AAACCAAAGCACTGGAGCGC 62.075 55.000 10.83 0.00 38.96 5.92
642 643 0.040067 GAAACCAAAGCACTGGAGCG 60.040 55.000 10.83 0.00 38.96 5.03
643 644 0.040067 CGAAACCAAAGCACTGGAGC 60.040 55.000 10.83 0.00 38.96 4.70
644 645 0.593128 CCGAAACCAAAGCACTGGAG 59.407 55.000 10.83 0.45 38.96 3.86
645 646 1.452145 GCCGAAACCAAAGCACTGGA 61.452 55.000 10.83 0.00 38.96 3.86
646 647 1.007387 GCCGAAACCAAAGCACTGG 60.007 57.895 2.66 2.66 42.68 4.00
647 648 0.314935 ATGCCGAAACCAAAGCACTG 59.685 50.000 0.00 0.00 38.21 3.66
648 649 0.598065 GATGCCGAAACCAAAGCACT 59.402 50.000 0.00 0.00 38.21 4.40
649 650 0.729140 CGATGCCGAAACCAAAGCAC 60.729 55.000 0.00 0.00 38.21 4.40
650 651 1.578926 CGATGCCGAAACCAAAGCA 59.421 52.632 0.00 0.00 40.00 3.91
651 652 1.154035 CCGATGCCGAAACCAAAGC 60.154 57.895 0.00 0.00 38.22 3.51
652 653 1.154035 GCCGATGCCGAAACCAAAG 60.154 57.895 0.00 0.00 38.22 2.77
653 654 1.899054 TGCCGATGCCGAAACCAAA 60.899 52.632 0.00 0.00 38.22 3.28
654 655 2.281831 TGCCGATGCCGAAACCAA 60.282 55.556 0.00 0.00 38.22 3.67
655 656 3.053291 GTGCCGATGCCGAAACCA 61.053 61.111 0.00 0.00 38.22 3.67
656 657 2.622011 TTGTGCCGATGCCGAAACC 61.622 57.895 0.00 0.00 38.22 3.27
657 658 1.442017 GTTGTGCCGATGCCGAAAC 60.442 57.895 0.00 0.00 38.22 2.78
658 659 2.622011 GGTTGTGCCGATGCCGAAA 61.622 57.895 0.00 0.00 38.22 3.46
659 660 3.053291 GGTTGTGCCGATGCCGAA 61.053 61.111 0.00 0.00 38.22 4.30
660 661 3.545124 AAGGTTGTGCCGATGCCGA 62.545 57.895 0.00 0.00 43.70 5.54
661 662 3.055719 AAGGTTGTGCCGATGCCG 61.056 61.111 0.00 0.00 43.70 5.69
662 663 1.315257 ATCAAGGTTGTGCCGATGCC 61.315 55.000 0.00 0.00 43.70 4.40
663 664 0.527565 AATCAAGGTTGTGCCGATGC 59.472 50.000 0.00 0.00 43.70 3.91
664 665 3.009723 ACTAATCAAGGTTGTGCCGATG 58.990 45.455 0.00 0.00 43.70 3.84
665 666 3.009723 CACTAATCAAGGTTGTGCCGAT 58.990 45.455 0.00 0.00 43.70 4.18
666 667 2.422597 CACTAATCAAGGTTGTGCCGA 58.577 47.619 0.00 0.00 43.70 5.54
667 668 1.135689 GCACTAATCAAGGTTGTGCCG 60.136 52.381 0.00 0.00 45.52 5.69
668 669 2.636768 GCACTAATCAAGGTTGTGCC 57.363 50.000 0.00 0.00 45.52 5.01
670 671 9.507280 CTAAATATTGCACTAATCAAGGTTGTG 57.493 33.333 0.00 0.00 0.00 3.33
671 672 8.686334 CCTAAATATTGCACTAATCAAGGTTGT 58.314 33.333 0.00 0.00 0.00 3.32
672 673 8.902806 TCCTAAATATTGCACTAATCAAGGTTG 58.097 33.333 0.00 0.00 0.00 3.77
673 674 9.474313 TTCCTAAATATTGCACTAATCAAGGTT 57.526 29.630 0.00 0.00 0.00 3.50
674 675 9.646522 ATTCCTAAATATTGCACTAATCAAGGT 57.353 29.630 0.00 0.00 0.00 3.50
728 729 4.320870 GTTTGTTTCGAGGAGGGATGTTA 58.679 43.478 0.00 0.00 0.00 2.41
734 735 0.865769 CACGTTTGTTTCGAGGAGGG 59.134 55.000 0.00 0.00 0.00 4.30
736 737 2.411547 GCATCACGTTTGTTTCGAGGAG 60.412 50.000 0.00 0.00 0.00 3.69
752 754 4.637534 GGAGTGCTCTCATTAAAAGCATCA 59.362 41.667 17.04 0.00 46.73 3.07
791 793 2.752354 CACCACTCTTTGTTGGTGTTCA 59.248 45.455 11.82 0.00 40.10 3.18
798 800 2.874701 CTCCTCACACCACTCTTTGTTG 59.125 50.000 0.00 0.00 0.00 3.33
904 922 1.367840 GAGTGACTCGGTGCCAGTT 59.632 57.895 0.00 0.00 0.00 3.16
923 941 0.664761 CATGAATGGTCGGTCATGCC 59.335 55.000 1.06 0.00 43.30 4.40
1010 2138 2.103771 TCCATTGATCTGCTGGAGCTAC 59.896 50.000 7.21 0.00 42.66 3.58
1247 2378 1.009389 CACGGAGTTGAGGTTCTCGC 61.009 60.000 0.00 0.00 41.61 5.03
1404 2541 4.332543 ACCTCCTCCCGGCTTCCA 62.333 66.667 0.00 0.00 0.00 3.53
1687 2827 1.000646 GTCGAGGAGACTGACCCCT 60.001 63.158 0.00 0.00 46.13 4.79
2666 5792 2.432874 TGTAGGCCGTAGCACATTGTAT 59.567 45.455 0.00 0.00 42.56 2.29
2928 6057 4.947388 TCATAATTAACAGAGCCAACCACC 59.053 41.667 0.00 0.00 0.00 4.61
2962 6091 6.519679 TCGATAGTTCACCTAGTTAAGCAA 57.480 37.500 0.00 0.00 37.40 3.91
2963 6092 5.450137 GCTCGATAGTTCACCTAGTTAAGCA 60.450 44.000 0.00 0.00 37.40 3.91
3045 6182 2.641815 AGTGGATGGAGAAGCTTTCTGT 59.358 45.455 0.00 0.00 40.87 3.41
3153 6293 4.041740 TCTCCAACCTCGAAATATGACG 57.958 45.455 0.00 0.00 0.00 4.35
3277 6417 1.134175 CACACCAAACTTGACACCACC 59.866 52.381 0.00 0.00 0.00 4.61
3305 6445 8.242729 AGAACCAAAGAATGAAACTTGAGAAT 57.757 30.769 0.00 0.00 0.00 2.40
3343 6483 1.977056 TCCTCGCCACACTATCGTAT 58.023 50.000 0.00 0.00 0.00 3.06
3363 6503 8.428063 TCCATGGTAAATTTTTGAACTGTTGAT 58.572 29.630 12.58 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.