Multiple sequence alignment - TraesCS2A01G024700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G024700 chr2A 100.000 3995 0 0 1 3995 11912262 11908268 0.000000e+00 7378.0
1 TraesCS2A01G024700 chr2B 95.079 1951 91 3 1761 3707 17365701 17363752 0.000000e+00 3066.0
2 TraesCS2A01G024700 chr2B 90.330 848 61 17 717 1547 17366635 17365792 0.000000e+00 1092.0
3 TraesCS2A01G024700 chr2B 86.309 745 61 14 214 933 16881235 16881963 0.000000e+00 773.0
4 TraesCS2A01G024700 chr2B 90.877 570 30 7 148 713 17367227 17366676 0.000000e+00 745.0
5 TraesCS2A01G024700 chr2B 91.139 79 5 2 72 148 16880225 16880303 5.460000e-19 106.0
6 TraesCS2A01G024700 chr2B 91.935 62 0 2 5 66 17367650 17367594 9.200000e-12 82.4
7 TraesCS2A01G024700 chr2B 88.710 62 1 3 5 66 16880185 16880240 1.990000e-08 71.3
8 TraesCS2A01G024700 chr2B 97.059 34 1 0 2814 2847 17364552 17364519 1.550000e-04 58.4
9 TraesCS2A01G024700 chr2D 94.050 1126 53 10 1761 2884 11045897 11047010 0.000000e+00 1696.0
10 TraesCS2A01G024700 chr2D 90.258 852 60 15 717 1547 11044956 11045805 0.000000e+00 1092.0
11 TraesCS2A01G024700 chr2D 90.830 578 35 6 145 719 11044359 11044921 0.000000e+00 758.0
12 TraesCS2A01G024700 chr2D 83.439 785 114 12 771 1545 11062330 11061552 0.000000e+00 715.0
13 TraesCS2A01G024700 chr2D 85.934 455 53 8 1761 2211 11061484 11061037 3.610000e-130 475.0
14 TraesCS2A01G024700 chr2D 85.833 120 11 6 2949 3067 11047115 11047229 5.420000e-24 122.0
15 TraesCS2A01G024700 chr2D 91.935 62 0 2 5 66 11043927 11043983 9.200000e-12 82.4
16 TraesCS2A01G024700 chr7B 88.272 1424 112 24 1764 3164 78243951 78242560 0.000000e+00 1653.0
17 TraesCS2A01G024700 chr7B 84.471 850 81 25 717 1541 78244874 78244051 0.000000e+00 791.0
18 TraesCS2A01G024700 chr7B 87.457 582 44 12 148 718 78245473 78244910 0.000000e+00 643.0
19 TraesCS2A01G024700 chr7B 88.439 173 18 2 1591 1762 443741566 443741395 1.460000e-49 207.0
20 TraesCS2A01G024700 chr7B 90.141 142 4 5 5 146 78246446 78246315 4.100000e-40 176.0
21 TraesCS2A01G024700 chrUn 94.344 831 35 4 719 1547 12633619 12632799 0.000000e+00 1264.0
22 TraesCS2A01G024700 chrUn 95.012 802 40 0 1761 2562 12632707 12631906 0.000000e+00 1260.0
23 TraesCS2A01G024700 chrUn 92.099 443 21 6 220 661 12634271 12633842 2.640000e-171 612.0
24 TraesCS2A01G024700 chrUn 89.327 431 29 8 839 1265 12185545 12185962 3.540000e-145 525.0
25 TraesCS2A01G024700 chrUn 81.754 285 42 5 1225 1501 38572184 38572466 3.110000e-56 230.0
26 TraesCS2A01G024700 chrUn 81.915 282 41 5 1228 1501 283368732 283368453 3.110000e-56 230.0
27 TraesCS2A01G024700 chrUn 81.915 282 41 5 1228 1501 359469152 359468873 3.110000e-56 230.0
28 TraesCS2A01G024700 chrUn 92.715 151 11 0 2564 2714 248321897 248322047 6.720000e-53 219.0
29 TraesCS2A01G024700 chrUn 92.715 151 11 0 2564 2714 377094918 377094768 6.720000e-53 219.0
30 TraesCS2A01G024700 chrUn 78.481 237 30 10 2949 3185 248322249 248322464 6.960000e-28 135.0
31 TraesCS2A01G024700 chrUn 78.333 240 31 10 2949 3188 377094566 377094348 6.960000e-28 135.0
32 TraesCS2A01G024700 chr4A 80.921 912 150 17 1761 2659 530937810 530936910 0.000000e+00 699.0
33 TraesCS2A01G024700 chr4A 78.105 306 53 11 3498 3796 478753718 478753420 8.820000e-42 182.0
34 TraesCS2A01G024700 chr4D 80.853 914 149 19 1759 2659 65075436 65074536 0.000000e+00 695.0
35 TraesCS2A01G024700 chr4B 81.027 896 151 14 1775 2659 95373888 95373001 0.000000e+00 695.0
36 TraesCS2A01G024700 chr1D 79.435 744 134 16 1919 2652 382743012 382742278 3.560000e-140 508.0
37 TraesCS2A01G024700 chr1D 90.000 170 13 4 1593 1759 118824102 118824270 2.420000e-52 217.0
38 TraesCS2A01G024700 chr1B 77.419 744 147 17 1919 2651 512764841 512764108 1.330000e-114 424.0
39 TraesCS2A01G024700 chr3B 78.661 478 82 15 1041 1501 41037337 41036863 2.330000e-77 300.0
40 TraesCS2A01G024700 chr3B 76.596 517 101 14 1834 2333 807720683 807720170 2.370000e-67 267.0
41 TraesCS2A01G024700 chr1A 90.476 168 14 2 1596 1762 181769591 181769425 1.870000e-53 220.0
42 TraesCS2A01G024700 chr5B 88.827 179 16 4 1581 1758 418818849 418818674 2.420000e-52 217.0
43 TraesCS2A01G024700 chr5B 88.889 171 17 2 1593 1762 98836191 98836022 4.050000e-50 209.0
44 TraesCS2A01G024700 chr7D 89.759 166 15 2 1595 1759 84347706 84347870 1.120000e-50 211.0
45 TraesCS2A01G024700 chr5D 89.286 168 16 2 1593 1759 123460078 123459912 4.050000e-50 209.0
46 TraesCS2A01G024700 chr3D 90.123 162 12 3 1599 1759 403701543 403701385 1.460000e-49 207.0
47 TraesCS2A01G024700 chr3D 75.649 308 55 14 3498 3796 70691750 70691454 6.960000e-28 135.0
48 TraesCS2A01G024700 chr7A 88.439 173 16 4 1589 1759 222649715 222649885 5.230000e-49 206.0
49 TraesCS2A01G024700 chr3A 80.934 257 44 3 3503 3757 492740912 492741165 8.760000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G024700 chr2A 11908268 11912262 3994 True 7378.000000 7378 100.000000 1 3995 1 chr2A.!!$R1 3994
1 TraesCS2A01G024700 chr2B 17363752 17367650 3898 True 1008.760000 3066 93.056000 5 3707 5 chr2B.!!$R1 3702
2 TraesCS2A01G024700 chr2B 16880185 16881963 1778 False 316.766667 773 88.719333 5 933 3 chr2B.!!$F1 928
3 TraesCS2A01G024700 chr2D 11043927 11047229 3302 False 750.080000 1696 90.581200 5 3067 5 chr2D.!!$F1 3062
4 TraesCS2A01G024700 chr2D 11061037 11062330 1293 True 595.000000 715 84.686500 771 2211 2 chr2D.!!$R1 1440
5 TraesCS2A01G024700 chr7B 78242560 78246446 3886 True 815.750000 1653 87.585250 5 3164 4 chr7B.!!$R2 3159
6 TraesCS2A01G024700 chrUn 12631906 12634271 2365 True 1045.333333 1264 93.818333 220 2562 3 chrUn.!!$R3 2342
7 TraesCS2A01G024700 chr4A 530936910 530937810 900 True 699.000000 699 80.921000 1761 2659 1 chr4A.!!$R2 898
8 TraesCS2A01G024700 chr4D 65074536 65075436 900 True 695.000000 695 80.853000 1759 2659 1 chr4D.!!$R1 900
9 TraesCS2A01G024700 chr4B 95373001 95373888 887 True 695.000000 695 81.027000 1775 2659 1 chr4B.!!$R1 884
10 TraesCS2A01G024700 chr1D 382742278 382743012 734 True 508.000000 508 79.435000 1919 2652 1 chr1D.!!$R1 733
11 TraesCS2A01G024700 chr1B 512764108 512764841 733 True 424.000000 424 77.419000 1919 2651 1 chr1B.!!$R1 732
12 TraesCS2A01G024700 chr3B 807720170 807720683 513 True 267.000000 267 76.596000 1834 2333 1 chr3B.!!$R2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 1509 0.390472 CTCAGAAGCTTCGTCCCCAC 60.390 60.0 20.43 0.0 0.0 4.61 F
724 1861 0.955905 TCTTTTACCTTTGCGTGGCC 59.044 50.0 0.00 0.0 0.0 5.36 F
1305 2540 1.107538 TCGCCCCTTCCACGAGATAG 61.108 60.0 0.00 0.0 0.0 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 3027 0.108585 TCAACTGTTGCACTCCCTCC 59.891 55.000 15.52 0.0 0.00 4.30 R
1752 3029 0.546122 TGTCAACTGTTGCACTCCCT 59.454 50.000 15.52 0.0 0.00 4.20 R
3194 4558 1.002468 CTGAAACTGAACAGGCAACCG 60.002 52.381 6.76 0.0 37.17 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.491403 AGCTCATTATCTGTCAAGTTTGGTTT 59.509 34.615 0.00 0.00 0.00 3.27
33 34 7.665559 AGCTCATTATCTGTCAAGTTTGGTTTA 59.334 33.333 0.00 0.00 0.00 2.01
34 35 7.750903 GCTCATTATCTGTCAAGTTTGGTTTAC 59.249 37.037 0.00 0.00 0.00 2.01
35 36 8.918202 TCATTATCTGTCAAGTTTGGTTTACT 57.082 30.769 0.00 0.00 0.00 2.24
36 37 9.349713 TCATTATCTGTCAAGTTTGGTTTACTT 57.650 29.630 0.00 0.00 36.31 2.24
37 38 9.965824 CATTATCTGTCAAGTTTGGTTTACTTT 57.034 29.630 0.00 0.00 33.73 2.66
66 67 3.482156 TGAAAAGTCTTGAGCTGCTCT 57.518 42.857 28.04 7.33 0.00 4.09
67 68 3.136763 TGAAAAGTCTTGAGCTGCTCTG 58.863 45.455 28.04 20.39 0.00 3.35
108 109 1.072173 TGGGGCGTCATATGATCTTGG 59.928 52.381 9.02 0.00 0.00 3.61
119 120 2.133281 TGATCTTGGTGGCCTTGATG 57.867 50.000 3.32 0.00 0.00 3.07
197 1162 4.960469 ACCTGGGATCAAATACTCGACTTA 59.040 41.667 0.00 0.00 0.00 2.24
309 1274 9.745018 AAATATTTAGGATGATGTAGACATGGG 57.255 33.333 0.00 0.00 36.57 4.00
419 1386 2.589442 GTCGAACACGGTGGGCAA 60.589 61.111 13.48 0.00 0.00 4.52
420 1387 1.964373 GTCGAACACGGTGGGCAAT 60.964 57.895 13.48 0.00 0.00 3.56
421 1388 1.228003 TCGAACACGGTGGGCAATT 60.228 52.632 13.48 0.00 0.00 2.32
422 1389 1.081509 CGAACACGGTGGGCAATTG 60.082 57.895 13.48 0.00 0.00 2.32
423 1390 1.288752 GAACACGGTGGGCAATTGG 59.711 57.895 13.48 0.00 0.00 3.16
424 1391 2.153547 GAACACGGTGGGCAATTGGG 62.154 60.000 13.48 0.00 0.00 4.12
425 1392 4.067913 CACGGTGGGCAATTGGGC 62.068 66.667 7.72 0.25 42.44 5.36
426 1393 4.612279 ACGGTGGGCAATTGGGCA 62.612 61.111 7.72 0.00 45.66 5.36
450 1417 6.486253 TGAGTCAAGTCAATGCATACTTTC 57.514 37.500 11.39 8.31 33.72 2.62
455 1422 6.371548 GTCAAGTCAATGCATACTTTCCTACA 59.628 38.462 11.39 0.00 33.72 2.74
535 1502 2.289072 TGGTTCCTTCTCAGAAGCTTCG 60.289 50.000 20.43 15.04 41.27 3.79
542 1509 0.390472 CTCAGAAGCTTCGTCCCCAC 60.390 60.000 20.43 0.00 0.00 4.61
571 1544 3.192422 GCTCTCTTCACAACTGCTAGAGA 59.808 47.826 0.00 0.00 39.09 3.10
639 1612 5.192927 TGGAAGTTGAGTGTTTTCAGATGT 58.807 37.500 0.00 0.00 0.00 3.06
719 1856 3.559238 ACTGCATCTTTTACCTTTGCG 57.441 42.857 0.00 0.00 36.11 4.85
722 1859 2.030363 TGCATCTTTTACCTTTGCGTGG 60.030 45.455 0.00 0.00 36.11 4.94
723 1860 2.595386 CATCTTTTACCTTTGCGTGGC 58.405 47.619 0.00 0.00 0.00 5.01
724 1861 0.955905 TCTTTTACCTTTGCGTGGCC 59.044 50.000 0.00 0.00 0.00 5.36
726 1863 1.797211 TTTTACCTTTGCGTGGCCGG 61.797 55.000 0.00 0.00 33.68 6.13
735 1911 2.809601 CGTGGCCGGAAGTCGAAG 60.810 66.667 5.05 0.00 42.43 3.79
766 1947 5.066893 GTGTTTGCATCATCCAGATACATGT 59.933 40.000 2.69 2.69 34.43 3.21
836 2038 5.077564 ACTTGGTCTACAGACTACACATGA 58.922 41.667 9.15 0.00 44.20 3.07
881 2083 3.117491 TCTGTCTTTGCTGTCTCTTGG 57.883 47.619 0.00 0.00 0.00 3.61
921 2130 4.962362 TGCTCTGGTATATGGAGAACTTGA 59.038 41.667 0.00 0.00 0.00 3.02
949 2160 5.551233 GCCCATAGCTTGTATGAATCTGTA 58.449 41.667 0.00 0.00 38.99 2.74
953 2164 8.725148 CCCATAGCTTGTATGAATCTGTATTTC 58.275 37.037 0.00 0.00 0.00 2.17
1009 2220 8.442632 TCTTAAATCATCAGAAATGGCTACTG 57.557 34.615 0.00 0.00 0.00 2.74
1065 2276 3.731867 CGAGCATTTTGAGCACATTACCC 60.732 47.826 0.00 0.00 0.00 3.69
1184 2396 6.952773 ATGGTTGTGCTTTAACAGTTTCTA 57.047 33.333 0.00 0.00 0.00 2.10
1305 2540 1.107538 TCGCCCCTTCCACGAGATAG 61.108 60.000 0.00 0.00 0.00 2.08
1536 2771 6.237728 CCGATTCAAATTGCATCAATGTTCAG 60.238 38.462 6.44 0.00 34.04 3.02
1558 2835 5.471116 CAGGATTCTCAATCTTTGTCACACA 59.529 40.000 0.00 0.00 38.01 3.72
1607 2884 7.680730 ACAATGACAATATATGTACTCCCTCC 58.319 38.462 0.00 0.00 44.12 4.30
1608 2885 7.292356 ACAATGACAATATATGTACTCCCTCCA 59.708 37.037 0.00 0.00 44.12 3.86
1609 2886 8.324306 CAATGACAATATATGTACTCCCTCCAT 58.676 37.037 0.00 0.00 44.12 3.41
1610 2887 7.872061 TGACAATATATGTACTCCCTCCATT 57.128 36.000 0.00 0.00 44.12 3.16
1611 2888 8.275187 TGACAATATATGTACTCCCTCCATTT 57.725 34.615 0.00 0.00 44.12 2.32
1612 2889 8.375506 TGACAATATATGTACTCCCTCCATTTC 58.624 37.037 0.00 0.00 44.12 2.17
1613 2890 8.511748 ACAATATATGTACTCCCTCCATTTCT 57.488 34.615 0.00 0.00 41.63 2.52
1614 2891 9.615660 ACAATATATGTACTCCCTCCATTTCTA 57.384 33.333 0.00 0.00 41.63 2.10
1625 2902 9.453830 ACTCCCTCCATTTCTAAATATAAGTCT 57.546 33.333 0.00 0.00 0.00 3.24
1626 2903 9.717942 CTCCCTCCATTTCTAAATATAAGTCTG 57.282 37.037 0.00 0.00 0.00 3.51
1627 2904 9.225682 TCCCTCCATTTCTAAATATAAGTCTGT 57.774 33.333 0.00 0.00 0.00 3.41
1628 2905 9.853177 CCCTCCATTTCTAAATATAAGTCTGTT 57.147 33.333 0.00 0.00 0.00 3.16
1646 2923 8.798748 AGTCTGTTTTAGATATTTCGATACGG 57.201 34.615 0.00 0.00 37.83 4.02
1647 2924 8.627403 AGTCTGTTTTAGATATTTCGATACGGA 58.373 33.333 0.00 0.00 37.83 4.69
1648 2925 8.689069 GTCTGTTTTAGATATTTCGATACGGAC 58.311 37.037 0.00 0.00 37.83 4.79
1649 2926 8.627403 TCTGTTTTAGATATTTCGATACGGACT 58.373 33.333 0.00 0.00 0.00 3.85
1650 2927 9.888878 CTGTTTTAGATATTTCGATACGGACTA 57.111 33.333 0.00 0.00 0.00 2.59
1651 2928 9.669353 TGTTTTAGATATTTCGATACGGACTAC 57.331 33.333 0.00 0.00 0.00 2.73
1652 2929 9.669353 GTTTTAGATATTTCGATACGGACTACA 57.331 33.333 0.00 0.00 0.00 2.74
1656 2933 7.682824 AGATATTTCGATACGGACTACATACG 58.317 38.462 0.00 0.00 0.00 3.06
1657 2934 4.472691 TTTCGATACGGACTACATACGG 57.527 45.455 0.00 0.00 0.00 4.02
1658 2935 3.385193 TCGATACGGACTACATACGGA 57.615 47.619 0.00 0.00 0.00 4.69
1659 2936 3.930336 TCGATACGGACTACATACGGAT 58.070 45.455 0.00 0.00 33.11 4.18
1660 2937 3.681417 TCGATACGGACTACATACGGATG 59.319 47.826 5.94 5.94 39.16 3.51
1662 2939 4.627035 CGATACGGACTACATACGGATGTA 59.373 45.833 19.32 19.32 44.77 2.29
1663 2940 5.292834 CGATACGGACTACATACGGATGTAT 59.707 44.000 20.64 11.04 45.42 2.29
1664 2941 6.476706 CGATACGGACTACATACGGATGTATA 59.523 42.308 20.64 10.32 45.42 1.47
1665 2942 7.306457 CGATACGGACTACATACGGATGTATAG 60.306 44.444 20.64 14.36 45.42 1.31
1666 2943 5.798132 ACGGACTACATACGGATGTATAGA 58.202 41.667 20.64 0.52 45.42 1.98
1667 2944 5.873712 ACGGACTACATACGGATGTATAGAG 59.126 44.000 20.64 13.28 45.42 2.43
1668 2945 6.104665 CGGACTACATACGGATGTATAGAGA 58.895 44.000 20.64 0.00 45.42 3.10
1669 2946 6.035866 CGGACTACATACGGATGTATAGAGAC 59.964 46.154 20.64 10.95 45.42 3.36
1670 2947 6.035866 GGACTACATACGGATGTATAGAGACG 59.964 46.154 20.64 9.79 45.42 4.18
1671 2948 6.462500 ACTACATACGGATGTATAGAGACGT 58.538 40.000 20.64 10.41 45.42 4.34
1672 2949 7.606349 ACTACATACGGATGTATAGAGACGTA 58.394 38.462 20.64 10.01 45.42 3.57
1673 2950 6.718454 ACATACGGATGTATAGAGACGTAC 57.282 41.667 12.79 0.00 44.77 3.67
1674 2951 6.462500 ACATACGGATGTATAGAGACGTACT 58.538 40.000 12.79 0.00 44.77 2.73
1675 2952 6.933521 ACATACGGATGTATAGAGACGTACTT 59.066 38.462 12.79 0.69 44.77 2.24
1676 2953 7.443575 ACATACGGATGTATAGAGACGTACTTT 59.556 37.037 12.79 0.00 44.77 2.66
1677 2954 8.929746 CATACGGATGTATAGAGACGTACTTTA 58.070 37.037 0.00 0.00 39.28 1.85
1678 2955 7.418840 ACGGATGTATAGAGACGTACTTTAG 57.581 40.000 0.00 0.00 32.30 1.85
1679 2956 7.212976 ACGGATGTATAGAGACGTACTTTAGA 58.787 38.462 0.00 0.00 32.30 2.10
1680 2957 7.384660 ACGGATGTATAGAGACGTACTTTAGAG 59.615 40.741 0.00 0.00 32.30 2.43
1681 2958 7.384660 CGGATGTATAGAGACGTACTTTAGAGT 59.615 40.741 0.00 0.00 39.97 3.24
1682 2959 8.497554 GGATGTATAGAGACGTACTTTAGAGTG 58.502 40.741 0.00 0.00 36.60 3.51
1683 2960 8.961294 ATGTATAGAGACGTACTTTAGAGTGT 57.039 34.615 0.00 0.00 36.60 3.55
1685 2962 9.526713 TGTATAGAGACGTACTTTAGAGTGTAG 57.473 37.037 0.00 0.00 36.60 2.74
1686 2963 9.743057 GTATAGAGACGTACTTTAGAGTGTAGA 57.257 37.037 0.00 0.00 36.60 2.59
1688 2965 9.835389 ATAGAGACGTACTTTAGAGTGTAGATT 57.165 33.333 0.00 0.00 36.60 2.40
1689 2966 8.200364 AGAGACGTACTTTAGAGTGTAGATTC 57.800 38.462 0.00 0.00 36.60 2.52
1690 2967 7.823310 AGAGACGTACTTTAGAGTGTAGATTCA 59.177 37.037 0.00 0.00 36.60 2.57
1691 2968 7.750769 AGACGTACTTTAGAGTGTAGATTCAC 58.249 38.462 0.00 0.00 36.60 3.18
1703 2980 7.664082 AGTGTAGATTCACTCATTTTGTCTG 57.336 36.000 0.00 0.00 44.07 3.51
1704 2981 7.220030 AGTGTAGATTCACTCATTTTGTCTGT 58.780 34.615 0.00 0.00 44.07 3.41
1705 2982 8.367911 AGTGTAGATTCACTCATTTTGTCTGTA 58.632 33.333 0.00 0.00 44.07 2.74
1706 2983 9.155975 GTGTAGATTCACTCATTTTGTCTGTAT 57.844 33.333 0.00 0.00 35.68 2.29
1707 2984 9.154847 TGTAGATTCACTCATTTTGTCTGTATG 57.845 33.333 0.00 0.00 0.00 2.39
1708 2985 9.155975 GTAGATTCACTCATTTTGTCTGTATGT 57.844 33.333 0.00 0.00 0.00 2.29
1710 2987 9.376075 AGATTCACTCATTTTGTCTGTATGTAG 57.624 33.333 0.00 0.00 0.00 2.74
1711 2988 9.155975 GATTCACTCATTTTGTCTGTATGTAGT 57.844 33.333 0.00 0.00 0.00 2.73
1712 2989 8.902540 TTCACTCATTTTGTCTGTATGTAGTT 57.097 30.769 0.00 0.00 0.00 2.24
1713 2990 8.534333 TCACTCATTTTGTCTGTATGTAGTTC 57.466 34.615 0.00 0.00 0.00 3.01
1714 2991 7.328493 TCACTCATTTTGTCTGTATGTAGTTCG 59.672 37.037 0.00 0.00 0.00 3.95
1715 2992 7.116376 CACTCATTTTGTCTGTATGTAGTTCGT 59.884 37.037 0.00 0.00 0.00 3.85
1716 2993 8.301720 ACTCATTTTGTCTGTATGTAGTTCGTA 58.698 33.333 0.00 0.00 0.00 3.43
1717 2994 8.683550 TCATTTTGTCTGTATGTAGTTCGTAG 57.316 34.615 0.00 0.00 0.00 3.51
1718 2995 6.939551 TTTTGTCTGTATGTAGTTCGTAGC 57.060 37.500 0.00 0.00 0.00 3.58
1719 2996 4.268767 TGTCTGTATGTAGTTCGTAGCG 57.731 45.455 0.00 0.00 0.00 4.26
1720 2997 3.064408 TGTCTGTATGTAGTTCGTAGCGG 59.936 47.826 0.00 0.00 0.00 5.52
1721 2998 3.310774 GTCTGTATGTAGTTCGTAGCGGA 59.689 47.826 0.00 0.00 0.00 5.54
1722 2999 3.940852 TCTGTATGTAGTTCGTAGCGGAA 59.059 43.478 0.00 0.00 0.00 4.30
1723 3000 4.577693 TCTGTATGTAGTTCGTAGCGGAAT 59.422 41.667 0.00 0.00 0.00 3.01
1724 3001 4.852138 TGTATGTAGTTCGTAGCGGAATC 58.148 43.478 0.00 0.00 0.00 2.52
1725 3002 4.577693 TGTATGTAGTTCGTAGCGGAATCT 59.422 41.667 0.00 0.00 0.00 2.40
1726 3003 3.687572 TGTAGTTCGTAGCGGAATCTC 57.312 47.619 0.00 0.00 0.00 2.75
1727 3004 3.276857 TGTAGTTCGTAGCGGAATCTCT 58.723 45.455 0.00 0.00 0.00 3.10
1728 3005 4.445453 TGTAGTTCGTAGCGGAATCTCTA 58.555 43.478 0.00 0.00 0.00 2.43
1729 3006 4.510711 TGTAGTTCGTAGCGGAATCTCTAG 59.489 45.833 0.00 0.00 0.00 2.43
1730 3007 2.879646 AGTTCGTAGCGGAATCTCTAGG 59.120 50.000 0.00 0.00 0.00 3.02
1731 3008 2.877168 GTTCGTAGCGGAATCTCTAGGA 59.123 50.000 0.00 3.02 0.00 2.94
1732 3009 3.204306 TCGTAGCGGAATCTCTAGGAA 57.796 47.619 0.00 0.00 29.87 3.36
1733 3010 3.139850 TCGTAGCGGAATCTCTAGGAAG 58.860 50.000 0.00 0.00 29.87 3.46
1734 3011 3.139850 CGTAGCGGAATCTCTAGGAAGA 58.860 50.000 0.00 0.00 0.00 2.87
1735 3012 3.058777 CGTAGCGGAATCTCTAGGAAGAC 60.059 52.174 0.00 0.00 0.00 3.01
1736 3013 3.306472 AGCGGAATCTCTAGGAAGACT 57.694 47.619 0.00 0.00 0.00 3.24
1737 3014 3.637769 AGCGGAATCTCTAGGAAGACTT 58.362 45.455 0.00 0.00 0.00 3.01
1738 3015 4.794334 AGCGGAATCTCTAGGAAGACTTA 58.206 43.478 0.00 0.00 0.00 2.24
1739 3016 5.390387 AGCGGAATCTCTAGGAAGACTTAT 58.610 41.667 0.00 0.00 0.00 1.73
1740 3017 6.544650 AGCGGAATCTCTAGGAAGACTTATA 58.455 40.000 0.00 0.00 0.00 0.98
1741 3018 7.179269 AGCGGAATCTCTAGGAAGACTTATAT 58.821 38.462 0.00 0.00 0.00 0.86
1742 3019 7.672239 AGCGGAATCTCTAGGAAGACTTATATT 59.328 37.037 0.00 0.00 0.00 1.28
1743 3020 8.308207 GCGGAATCTCTAGGAAGACTTATATTT 58.692 37.037 0.00 0.00 0.00 1.40
1751 3028 9.075678 TCTAGGAAGACTTATATTTAGGAACGG 57.924 37.037 0.00 0.00 0.00 4.44
1752 3029 7.909485 AGGAAGACTTATATTTAGGAACGGA 57.091 36.000 0.00 0.00 0.00 4.69
1753 3030 7.953752 AGGAAGACTTATATTTAGGAACGGAG 58.046 38.462 0.00 0.00 0.00 4.63
1754 3031 7.015389 AGGAAGACTTATATTTAGGAACGGAGG 59.985 40.741 0.00 0.00 0.00 4.30
1755 3032 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1756 3033 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1757 3034 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2137 3428 4.284178 TGTAGTGGGGTCATAGTAAGTCC 58.716 47.826 0.00 0.00 0.00 3.85
2279 3583 6.436027 TCTATACAGAGGTGAAATCTCCACT 58.564 40.000 4.50 0.63 35.05 4.00
2800 4107 2.832838 TGTAGCCCAGAAATGAGAGGA 58.167 47.619 0.00 0.00 0.00 3.71
2964 4313 6.255020 AGTTTATGCTACGTTTTATCTGGTCG 59.745 38.462 0.00 0.00 0.00 4.79
2970 4319 5.228843 GCTACGTTTTATCTGGTCGTAACTC 59.771 44.000 0.00 0.00 36.75 3.01
3073 4425 5.346181 AGGAAAGGACATGCTCTACTTAC 57.654 43.478 0.00 0.00 0.00 2.34
3144 4506 5.527214 TCCATTTCTTATGATGGTTGCTACG 59.473 40.000 2.64 0.00 42.72 3.51
3150 4514 1.356624 GATGGTTGCTACGCCATGC 59.643 57.895 0.36 0.00 44.73 4.06
3164 4528 3.117794 CGCCATGCATATTTTCTTGGTG 58.882 45.455 0.00 0.00 33.65 4.17
3205 4569 1.544724 ATACAATGCGGTTGCCTGTT 58.455 45.000 1.92 0.00 41.69 3.16
3230 4594 9.638239 TTCAGTTTCAGTGCCAAATAATAATTC 57.362 29.630 0.00 0.00 0.00 2.17
3297 4661 5.576447 TTTTCAAGAGTCTGTTTGGTTCC 57.424 39.130 0.00 0.00 0.00 3.62
3300 4664 4.594970 TCAAGAGTCTGTTTGGTTCCAAA 58.405 39.130 12.29 12.29 34.09 3.28
3370 4734 0.466555 ACCCTAGGACTAGCTCTGCG 60.467 60.000 11.48 0.00 31.95 5.18
3397 4761 5.666969 TTAATTGTATGCACGTAGCCATC 57.333 39.130 7.38 0.20 44.83 3.51
3452 4816 2.286872 CATGATGCTCTCAAGGACCAC 58.713 52.381 0.00 0.00 37.44 4.16
3458 4822 4.207891 TGCTCTCAAGGACCACTAATTC 57.792 45.455 0.00 0.00 0.00 2.17
3523 4888 2.287915 GTGGTGACAACACATGAGTGAC 59.712 50.000 18.84 0.00 46.10 3.67
3537 4902 3.076621 TGAGTGACTTCAATGATGGTGC 58.923 45.455 1.24 0.00 0.00 5.01
3538 4903 3.244665 TGAGTGACTTCAATGATGGTGCT 60.245 43.478 1.24 0.00 0.00 4.40
3559 4924 1.986757 ATGCACCCAGTCTCGAGCT 60.987 57.895 7.81 5.50 0.00 4.09
3560 4925 0.684479 ATGCACCCAGTCTCGAGCTA 60.684 55.000 7.81 0.00 0.00 3.32
3585 4950 2.237392 GGTGAAAGCCTAGGTCTCACAT 59.763 50.000 27.14 9.72 38.50 3.21
3593 4958 2.834549 CCTAGGTCTCACATGAGTTGGT 59.165 50.000 8.70 0.00 42.60 3.67
3637 5002 0.168788 TCTACGTCGTTACCTTGCCG 59.831 55.000 1.78 0.00 0.00 5.69
3657 5022 4.285292 CCGAAGACATTGCTTGAATATGC 58.715 43.478 0.00 0.00 0.00 3.14
3665 5030 6.351711 ACATTGCTTGAATATGCTCTGACTA 58.648 36.000 0.00 0.00 0.00 2.59
3707 5072 2.290896 TGATTCTGGCCTTGGTAGTTGG 60.291 50.000 3.32 0.00 0.00 3.77
3708 5073 0.404040 TTCTGGCCTTGGTAGTTGGG 59.596 55.000 3.32 0.00 0.00 4.12
3709 5074 0.770557 TCTGGCCTTGGTAGTTGGGT 60.771 55.000 3.32 0.00 0.00 4.51
3710 5075 0.322546 CTGGCCTTGGTAGTTGGGTC 60.323 60.000 3.32 0.00 0.00 4.46
3711 5076 1.001269 GGCCTTGGTAGTTGGGTCC 60.001 63.158 0.00 0.00 0.00 4.46
3712 5077 1.376812 GCCTTGGTAGTTGGGTCCG 60.377 63.158 0.00 0.00 0.00 4.79
3713 5078 1.298667 CCTTGGTAGTTGGGTCCGG 59.701 63.158 0.00 0.00 0.00 5.14
3714 5079 1.486145 CCTTGGTAGTTGGGTCCGGT 61.486 60.000 0.00 0.00 0.00 5.28
3715 5080 0.321298 CTTGGTAGTTGGGTCCGGTG 60.321 60.000 0.00 0.00 0.00 4.94
3716 5081 0.763604 TTGGTAGTTGGGTCCGGTGA 60.764 55.000 0.00 0.00 0.00 4.02
3717 5082 1.294459 GGTAGTTGGGTCCGGTGAC 59.706 63.158 0.00 0.00 40.98 3.67
3718 5083 1.190178 GGTAGTTGGGTCCGGTGACT 61.190 60.000 0.00 2.37 41.47 3.41
3719 5084 0.037605 GTAGTTGGGTCCGGTGACTG 60.038 60.000 0.00 0.00 41.47 3.51
3720 5085 1.823169 TAGTTGGGTCCGGTGACTGC 61.823 60.000 0.00 0.00 41.47 4.40
3721 5086 4.308458 TTGGGTCCGGTGACTGCG 62.308 66.667 0.00 0.00 41.47 5.18
3723 5088 4.736896 GGGTCCGGTGACTGCGAC 62.737 72.222 0.00 4.95 41.47 5.19
3729 5094 4.400109 GGTGACTGCGACGCTCGA 62.400 66.667 22.08 0.00 43.74 4.04
3730 5095 2.872001 GTGACTGCGACGCTCGAG 60.872 66.667 22.08 8.45 43.74 4.04
3731 5096 4.760840 TGACTGCGACGCTCGAGC 62.761 66.667 27.64 27.64 43.74 5.03
3732 5097 4.760840 GACTGCGACGCTCGAGCA 62.761 66.667 34.69 16.60 43.74 4.26
3733 5098 4.121669 ACTGCGACGCTCGAGCAT 62.122 61.111 34.69 23.51 43.74 3.79
3734 5099 3.318555 CTGCGACGCTCGAGCATC 61.319 66.667 34.69 29.07 43.74 3.91
3747 5112 2.901975 AGCATCGCTCCCTTACTGA 58.098 52.632 0.00 0.00 30.62 3.41
3748 5113 1.195115 AGCATCGCTCCCTTACTGAA 58.805 50.000 0.00 0.00 30.62 3.02
3749 5114 1.137872 AGCATCGCTCCCTTACTGAAG 59.862 52.381 0.00 0.00 30.62 3.02
3760 5125 4.918810 CCTTACTGAAGGCTTTGTTGTT 57.081 40.909 0.00 0.00 45.91 2.83
3761 5126 4.610945 CCTTACTGAAGGCTTTGTTGTTG 58.389 43.478 0.00 0.00 45.91 3.33
3762 5127 2.584492 ACTGAAGGCTTTGTTGTTGC 57.416 45.000 0.00 0.00 0.00 4.17
3763 5128 1.824230 ACTGAAGGCTTTGTTGTTGCA 59.176 42.857 0.00 0.00 0.00 4.08
3764 5129 2.233431 ACTGAAGGCTTTGTTGTTGCAA 59.767 40.909 0.00 0.00 0.00 4.08
3765 5130 3.260740 CTGAAGGCTTTGTTGTTGCAAA 58.739 40.909 0.00 0.00 36.93 3.68
3766 5131 3.668447 TGAAGGCTTTGTTGTTGCAAAA 58.332 36.364 0.00 0.00 37.82 2.44
3767 5132 4.260170 TGAAGGCTTTGTTGTTGCAAAAT 58.740 34.783 0.00 0.00 37.82 1.82
3768 5133 4.332268 TGAAGGCTTTGTTGTTGCAAAATC 59.668 37.500 0.00 0.00 37.82 2.17
3769 5134 4.141233 AGGCTTTGTTGTTGCAAAATCT 57.859 36.364 0.00 0.00 37.82 2.40
3770 5135 4.122046 AGGCTTTGTTGTTGCAAAATCTC 58.878 39.130 0.00 0.00 37.82 2.75
3771 5136 3.060339 GGCTTTGTTGTTGCAAAATCTCG 60.060 43.478 0.00 0.00 37.82 4.04
3772 5137 3.551485 GCTTTGTTGTTGCAAAATCTCGT 59.449 39.130 0.00 0.00 37.82 4.18
3773 5138 4.317348 GCTTTGTTGTTGCAAAATCTCGTC 60.317 41.667 0.00 0.00 37.82 4.20
3774 5139 4.362932 TTGTTGTTGCAAAATCTCGTCA 57.637 36.364 0.00 0.00 0.00 4.35
3775 5140 4.566545 TGTTGTTGCAAAATCTCGTCAT 57.433 36.364 0.00 0.00 0.00 3.06
3776 5141 5.681337 TGTTGTTGCAAAATCTCGTCATA 57.319 34.783 0.00 0.00 0.00 2.15
3777 5142 5.448438 TGTTGTTGCAAAATCTCGTCATAC 58.552 37.500 0.00 0.00 0.00 2.39
3778 5143 4.320667 TGTTGCAAAATCTCGTCATACG 57.679 40.909 0.00 0.00 44.19 3.06
3779 5144 3.743911 TGTTGCAAAATCTCGTCATACGT 59.256 39.130 0.00 0.00 43.14 3.57
3780 5145 3.989705 TGCAAAATCTCGTCATACGTG 57.010 42.857 0.00 0.00 43.14 4.49
3781 5146 3.322369 TGCAAAATCTCGTCATACGTGT 58.678 40.909 0.00 0.00 43.14 4.49
3782 5147 4.487019 TGCAAAATCTCGTCATACGTGTA 58.513 39.130 0.00 0.00 43.14 2.90
3783 5148 4.924462 TGCAAAATCTCGTCATACGTGTAA 59.076 37.500 0.00 0.00 43.14 2.41
3784 5149 5.579119 TGCAAAATCTCGTCATACGTGTAAT 59.421 36.000 0.00 0.00 43.14 1.89
3785 5150 5.896432 GCAAAATCTCGTCATACGTGTAATG 59.104 40.000 0.00 0.00 43.14 1.90
3786 5151 6.455113 GCAAAATCTCGTCATACGTGTAATGT 60.455 38.462 0.00 0.00 43.14 2.71
3787 5152 6.807708 AAATCTCGTCATACGTGTAATGTC 57.192 37.500 0.00 0.00 43.14 3.06
3788 5153 4.950434 TCTCGTCATACGTGTAATGTCA 57.050 40.909 0.00 0.00 43.14 3.58
3789 5154 5.494632 TCTCGTCATACGTGTAATGTCAT 57.505 39.130 0.00 0.00 43.14 3.06
3790 5155 5.270853 TCTCGTCATACGTGTAATGTCATG 58.729 41.667 0.00 0.00 43.14 3.07
3791 5156 5.065474 TCTCGTCATACGTGTAATGTCATGA 59.935 40.000 0.00 0.00 43.14 3.07
3792 5157 5.642686 TCGTCATACGTGTAATGTCATGAA 58.357 37.500 0.00 0.00 43.14 2.57
3793 5158 6.094061 TCGTCATACGTGTAATGTCATGAAA 58.906 36.000 0.00 0.00 43.14 2.69
3794 5159 6.754675 TCGTCATACGTGTAATGTCATGAAAT 59.245 34.615 0.00 0.00 43.14 2.17
3795 5160 6.840789 CGTCATACGTGTAATGTCATGAAATG 59.159 38.462 0.00 0.00 40.61 2.32
3796 5161 7.253950 CGTCATACGTGTAATGTCATGAAATGA 60.254 37.037 0.00 0.00 43.69 2.57
3817 5182 9.485206 AAATGATCATTTTTGAGAAACAAGAGG 57.515 29.630 24.83 0.00 37.74 3.69
3818 5183 7.822161 TGATCATTTTTGAGAAACAAGAGGA 57.178 32.000 0.00 0.00 39.77 3.71
3819 5184 7.879070 TGATCATTTTTGAGAAACAAGAGGAG 58.121 34.615 0.00 0.00 39.77 3.69
3820 5185 7.720957 TGATCATTTTTGAGAAACAAGAGGAGA 59.279 33.333 0.00 0.00 39.77 3.71
3821 5186 7.264373 TCATTTTTGAGAAACAAGAGGAGAC 57.736 36.000 0.00 0.00 39.77 3.36
3822 5187 6.828273 TCATTTTTGAGAAACAAGAGGAGACA 59.172 34.615 0.00 0.00 39.77 3.41
3823 5188 6.683974 TTTTTGAGAAACAAGAGGAGACAG 57.316 37.500 0.00 0.00 39.77 3.51
3824 5189 5.614324 TTTGAGAAACAAGAGGAGACAGA 57.386 39.130 0.00 0.00 39.77 3.41
3825 5190 4.862902 TGAGAAACAAGAGGAGACAGAG 57.137 45.455 0.00 0.00 0.00 3.35
3826 5191 3.576118 TGAGAAACAAGAGGAGACAGAGG 59.424 47.826 0.00 0.00 0.00 3.69
3827 5192 2.903135 AGAAACAAGAGGAGACAGAGGG 59.097 50.000 0.00 0.00 0.00 4.30
3828 5193 2.704190 AACAAGAGGAGACAGAGGGA 57.296 50.000 0.00 0.00 0.00 4.20
3829 5194 2.704190 ACAAGAGGAGACAGAGGGAA 57.296 50.000 0.00 0.00 0.00 3.97
3830 5195 2.977808 ACAAGAGGAGACAGAGGGAAA 58.022 47.619 0.00 0.00 0.00 3.13
3831 5196 2.903135 ACAAGAGGAGACAGAGGGAAAG 59.097 50.000 0.00 0.00 0.00 2.62
3832 5197 3.169099 CAAGAGGAGACAGAGGGAAAGA 58.831 50.000 0.00 0.00 0.00 2.52
3833 5198 3.551635 AGAGGAGACAGAGGGAAAGAA 57.448 47.619 0.00 0.00 0.00 2.52
3834 5199 3.169908 AGAGGAGACAGAGGGAAAGAAC 58.830 50.000 0.00 0.00 0.00 3.01
3835 5200 2.900546 GAGGAGACAGAGGGAAAGAACA 59.099 50.000 0.00 0.00 0.00 3.18
3836 5201 2.903135 AGGAGACAGAGGGAAAGAACAG 59.097 50.000 0.00 0.00 0.00 3.16
3837 5202 2.900546 GGAGACAGAGGGAAAGAACAGA 59.099 50.000 0.00 0.00 0.00 3.41
3838 5203 3.325135 GGAGACAGAGGGAAAGAACAGAA 59.675 47.826 0.00 0.00 0.00 3.02
3839 5204 4.562552 GGAGACAGAGGGAAAGAACAGAAG 60.563 50.000 0.00 0.00 0.00 2.85
3840 5205 3.070748 GACAGAGGGAAAGAACAGAAGC 58.929 50.000 0.00 0.00 0.00 3.86
3841 5206 2.439507 ACAGAGGGAAAGAACAGAAGCA 59.560 45.455 0.00 0.00 0.00 3.91
3842 5207 3.117888 ACAGAGGGAAAGAACAGAAGCAA 60.118 43.478 0.00 0.00 0.00 3.91
3843 5208 4.077822 CAGAGGGAAAGAACAGAAGCAAT 58.922 43.478 0.00 0.00 0.00 3.56
3844 5209 4.522022 CAGAGGGAAAGAACAGAAGCAATT 59.478 41.667 0.00 0.00 0.00 2.32
3845 5210 4.522022 AGAGGGAAAGAACAGAAGCAATTG 59.478 41.667 0.00 0.00 0.00 2.32
3846 5211 3.575687 AGGGAAAGAACAGAAGCAATTGG 59.424 43.478 7.72 0.00 0.00 3.16
3847 5212 3.320626 GGAAAGAACAGAAGCAATTGGC 58.679 45.455 7.72 0.00 45.30 4.52
3856 5221 2.800736 GCAATTGGCTAGGTGCGG 59.199 61.111 7.72 0.00 44.05 5.69
3857 5222 2.046285 GCAATTGGCTAGGTGCGGT 61.046 57.895 7.72 0.00 44.05 5.68
3858 5223 1.802636 CAATTGGCTAGGTGCGGTG 59.197 57.895 0.00 0.00 44.05 4.94
3859 5224 1.378514 AATTGGCTAGGTGCGGTGG 60.379 57.895 0.00 0.00 44.05 4.61
3860 5225 3.995506 ATTGGCTAGGTGCGGTGGC 62.996 63.158 0.00 0.00 44.05 5.01
3871 5236 2.182284 CGGTGGCCGTTATCGTCA 59.818 61.111 0.00 0.00 42.73 4.35
3872 5237 1.227147 CGGTGGCCGTTATCGTCAT 60.227 57.895 0.00 0.00 42.73 3.06
3873 5238 1.213094 CGGTGGCCGTTATCGTCATC 61.213 60.000 0.00 0.00 42.73 2.92
3874 5239 0.878961 GGTGGCCGTTATCGTCATCC 60.879 60.000 0.00 0.00 35.01 3.51
3875 5240 0.104304 GTGGCCGTTATCGTCATCCT 59.896 55.000 0.00 0.00 35.01 3.24
3876 5241 1.338973 GTGGCCGTTATCGTCATCCTA 59.661 52.381 0.00 0.00 35.01 2.94
3877 5242 1.338973 TGGCCGTTATCGTCATCCTAC 59.661 52.381 0.00 0.00 35.01 3.18
3878 5243 1.665161 GGCCGTTATCGTCATCCTACG 60.665 57.143 0.00 0.00 44.19 3.51
3879 5244 1.682982 CCGTTATCGTCATCCTACGC 58.317 55.000 0.00 0.00 42.56 4.42
3880 5245 1.665161 CCGTTATCGTCATCCTACGCC 60.665 57.143 0.00 0.00 42.56 5.68
3881 5246 1.665161 CGTTATCGTCATCCTACGCCC 60.665 57.143 0.00 0.00 42.56 6.13
3882 5247 0.594602 TTATCGTCATCCTACGCCCG 59.405 55.000 0.00 0.00 42.56 6.13
3883 5248 0.535780 TATCGTCATCCTACGCCCGT 60.536 55.000 0.00 0.00 42.56 5.28
3884 5249 1.793134 ATCGTCATCCTACGCCCGTC 61.793 60.000 0.00 0.00 42.56 4.79
3885 5250 2.478890 CGTCATCCTACGCCCGTCT 61.479 63.158 0.00 0.00 35.87 4.18
3886 5251 1.162181 CGTCATCCTACGCCCGTCTA 61.162 60.000 0.00 0.00 35.87 2.59
3887 5252 0.310232 GTCATCCTACGCCCGTCTAC 59.690 60.000 0.00 0.00 0.00 2.59
3888 5253 0.107066 TCATCCTACGCCCGTCTACA 60.107 55.000 0.00 0.00 0.00 2.74
3889 5254 0.311165 CATCCTACGCCCGTCTACAG 59.689 60.000 0.00 0.00 0.00 2.74
3890 5255 0.106819 ATCCTACGCCCGTCTACAGT 60.107 55.000 0.00 0.00 0.00 3.55
3891 5256 0.745845 TCCTACGCCCGTCTACAGTC 60.746 60.000 0.00 0.00 0.00 3.51
3892 5257 1.722636 CCTACGCCCGTCTACAGTCC 61.723 65.000 0.00 0.00 0.00 3.85
3893 5258 1.722636 CTACGCCCGTCTACAGTCCC 61.723 65.000 0.00 0.00 0.00 4.46
3894 5259 4.189188 CGCCCGTCTACAGTCCCG 62.189 72.222 0.00 0.00 0.00 5.14
3895 5260 3.066814 GCCCGTCTACAGTCCCGT 61.067 66.667 0.00 0.00 0.00 5.28
3896 5261 2.882876 CCCGTCTACAGTCCCGTG 59.117 66.667 0.00 0.00 0.00 4.94
3897 5262 1.676635 CCCGTCTACAGTCCCGTGA 60.677 63.158 0.00 0.00 0.00 4.35
3898 5263 1.654954 CCCGTCTACAGTCCCGTGAG 61.655 65.000 0.00 0.00 0.00 3.51
3914 5279 2.878406 CGTGAGGCCCAAAACTATATGG 59.122 50.000 0.00 0.00 36.42 2.74
3915 5280 2.623416 GTGAGGCCCAAAACTATATGGC 59.377 50.000 0.00 0.00 41.42 4.40
3916 5281 1.880027 GAGGCCCAAAACTATATGGCG 59.120 52.381 0.00 0.00 43.09 5.69
3917 5282 0.313987 GGCCCAAAACTATATGGCGC 59.686 55.000 0.00 0.00 43.09 6.53
3918 5283 0.313987 GCCCAAAACTATATGGCGCC 59.686 55.000 22.73 22.73 35.28 6.53
3919 5284 1.686355 CCCAAAACTATATGGCGCCA 58.314 50.000 34.80 34.80 35.28 5.69
3920 5285 2.238521 CCCAAAACTATATGGCGCCAT 58.761 47.619 41.28 41.28 40.19 4.40
3921 5286 3.417101 CCCAAAACTATATGGCGCCATA 58.583 45.455 42.58 42.58 42.28 2.74
3922 5287 3.440173 CCCAAAACTATATGGCGCCATAG 59.560 47.826 42.36 35.96 41.51 2.23
3923 5288 3.440173 CCAAAACTATATGGCGCCATAGG 59.560 47.826 42.36 36.90 41.51 2.57
3924 5289 2.403252 AACTATATGGCGCCATAGGC 57.597 50.000 42.36 13.41 46.75 3.93
3938 5303 4.336532 CCATAGGCAACGTTTACAGTTC 57.663 45.455 0.00 0.00 46.39 3.01
3939 5304 3.749088 CCATAGGCAACGTTTACAGTTCA 59.251 43.478 0.00 0.00 46.39 3.18
3940 5305 4.394920 CCATAGGCAACGTTTACAGTTCAT 59.605 41.667 0.00 0.00 46.39 2.57
3941 5306 5.106317 CCATAGGCAACGTTTACAGTTCATT 60.106 40.000 0.00 0.00 46.39 2.57
3942 5307 4.911514 AGGCAACGTTTACAGTTCATTT 57.088 36.364 0.00 0.00 46.39 2.32
3943 5308 5.257082 AGGCAACGTTTACAGTTCATTTT 57.743 34.783 0.00 0.00 46.39 1.82
3944 5309 5.040635 AGGCAACGTTTACAGTTCATTTTG 58.959 37.500 0.00 0.00 46.39 2.44
3945 5310 4.317769 GGCAACGTTTACAGTTCATTTTGC 60.318 41.667 0.00 0.00 36.85 3.68
3946 5311 4.266502 GCAACGTTTACAGTTCATTTTGCA 59.733 37.500 0.00 0.00 37.39 4.08
3947 5312 5.220303 GCAACGTTTACAGTTCATTTTGCAA 60.220 36.000 0.00 0.00 37.39 4.08
3948 5313 6.670927 GCAACGTTTACAGTTCATTTTGCAAA 60.671 34.615 8.05 8.05 37.39 3.68
3949 5314 6.325849 ACGTTTACAGTTCATTTTGCAAAC 57.674 33.333 12.39 0.00 30.72 2.93
3950 5315 6.096695 ACGTTTACAGTTCATTTTGCAAACT 58.903 32.000 12.39 3.28 31.48 2.66
3954 5319 3.132925 CAGTTCATTTTGCAAACTGGGG 58.867 45.455 24.21 11.16 43.84 4.96
3955 5320 1.872952 GTTCATTTTGCAAACTGGGGC 59.127 47.619 24.21 13.54 0.00 5.80
3956 5321 0.033228 TCATTTTGCAAACTGGGGCG 59.967 50.000 24.21 4.05 0.00 6.13
3957 5322 1.301637 ATTTTGCAAACTGGGGCGC 60.302 52.632 12.39 0.00 0.00 6.53
3958 5323 2.037620 ATTTTGCAAACTGGGGCGCA 62.038 50.000 12.39 3.57 0.00 6.09
3959 5324 2.914777 TTTTGCAAACTGGGGCGCAC 62.915 55.000 12.39 4.83 33.29 5.34
3972 5337 4.154347 CGCACCCCCTCTCTGCTC 62.154 72.222 0.00 0.00 0.00 4.26
3973 5338 2.686835 GCACCCCCTCTCTGCTCT 60.687 66.667 0.00 0.00 0.00 4.09
3974 5339 3.028921 GCACCCCCTCTCTGCTCTG 62.029 68.421 0.00 0.00 0.00 3.35
3975 5340 2.040278 ACCCCCTCTCTGCTCTGG 59.960 66.667 0.00 0.00 0.00 3.86
3976 5341 2.767496 CCCCCTCTCTGCTCTGGG 60.767 72.222 0.00 0.00 39.37 4.45
3977 5342 3.478274 CCCCTCTCTGCTCTGGGC 61.478 72.222 0.00 0.00 38.37 5.36
3978 5343 2.365370 CCCTCTCTGCTCTGGGCT 60.365 66.667 0.00 0.00 42.39 5.19
3979 5344 2.733669 CCCTCTCTGCTCTGGGCTG 61.734 68.421 0.00 0.00 42.39 4.85
3980 5345 2.733669 CCTCTCTGCTCTGGGCTGG 61.734 68.421 6.56 0.00 42.39 4.85
3981 5346 3.388703 CTCTCTGCTCTGGGCTGGC 62.389 68.421 6.56 0.00 42.39 4.85
3982 5347 4.486503 CTCTGCTCTGGGCTGGCC 62.487 72.222 14.23 14.23 42.39 5.36
3992 5357 4.259952 GGCTGGCCCATTAACCTC 57.740 61.111 0.00 0.00 0.00 3.85
3993 5358 1.615262 GGCTGGCCCATTAACCTCT 59.385 57.895 0.00 0.00 0.00 3.69
3994 5359 0.033109 GGCTGGCCCATTAACCTCTT 60.033 55.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.026052 TGACAGATAATGAGCTGGACAGA 58.974 43.478 0.00 0.00 43.70 3.41
1 2 4.397481 TGACAGATAATGAGCTGGACAG 57.603 45.455 0.00 0.00 43.70 3.51
2 3 4.223700 ACTTGACAGATAATGAGCTGGACA 59.776 41.667 0.00 0.00 43.70 4.02
3 4 4.764172 ACTTGACAGATAATGAGCTGGAC 58.236 43.478 0.00 0.00 43.70 4.02
32 33 8.573885 TCAAGACTTTTCATCGTCTCTAAAGTA 58.426 33.333 0.00 0.00 39.44 2.24
33 34 7.434492 TCAAGACTTTTCATCGTCTCTAAAGT 58.566 34.615 0.00 0.00 39.44 2.66
34 35 7.411372 GCTCAAGACTTTTCATCGTCTCTAAAG 60.411 40.741 0.00 0.00 39.44 1.85
35 36 6.366332 GCTCAAGACTTTTCATCGTCTCTAAA 59.634 38.462 0.00 0.00 39.44 1.85
36 37 5.864474 GCTCAAGACTTTTCATCGTCTCTAA 59.136 40.000 0.00 0.00 39.44 2.10
37 38 5.184096 AGCTCAAGACTTTTCATCGTCTCTA 59.816 40.000 0.00 0.00 39.44 2.43
66 67 0.604780 GGAGCAGTCAAGCTTGAGCA 60.605 55.000 30.92 11.92 46.75 4.26
67 68 0.604780 TGGAGCAGTCAAGCTTGAGC 60.605 55.000 29.13 27.03 46.75 4.26
108 109 0.912486 AGGTAGACCATCAAGGCCAC 59.088 55.000 5.01 0.00 43.14 5.01
119 120 1.853963 TCCTTGAGCTCAGGTAGACC 58.146 55.000 22.79 0.00 0.00 3.85
146 1107 1.553704 AGGTACAACCGCCCTTCTAAG 59.446 52.381 0.00 0.00 44.90 2.18
197 1162 5.473931 CATTAGTAAGACACACAGAGCACT 58.526 41.667 0.00 0.00 0.00 4.40
337 1303 6.364261 CGTCCACGTCACTCTAAATATAGAG 58.636 44.000 10.53 10.53 45.50 2.43
419 1386 2.885135 TGACTTGACTCATGCCCAAT 57.115 45.000 0.00 0.00 0.00 3.16
420 1387 2.655090 TTGACTTGACTCATGCCCAA 57.345 45.000 0.00 0.00 0.00 4.12
421 1388 2.439409 CATTGACTTGACTCATGCCCA 58.561 47.619 0.00 0.00 0.00 5.36
422 1389 1.133790 GCATTGACTTGACTCATGCCC 59.866 52.381 0.00 0.00 0.00 5.36
423 1390 1.814394 TGCATTGACTTGACTCATGCC 59.186 47.619 0.00 0.00 33.10 4.40
424 1391 3.777465 ATGCATTGACTTGACTCATGC 57.223 42.857 0.00 0.00 0.00 4.06
425 1392 6.432607 AAGTATGCATTGACTTGACTCATG 57.567 37.500 12.96 0.00 34.61 3.07
426 1393 6.094603 GGAAAGTATGCATTGACTTGACTCAT 59.905 38.462 14.17 0.00 36.05 2.90
455 1422 0.691078 ATGAGATGCCCACCTACCGT 60.691 55.000 0.00 0.00 0.00 4.83
535 1502 0.534873 GAGAGCAGAGAAGTGGGGAC 59.465 60.000 0.00 0.00 0.00 4.46
542 1509 3.989167 CAGTTGTGAAGAGAGCAGAGAAG 59.011 47.826 0.00 0.00 0.00 2.85
571 1544 2.176798 AGATCGGACTCTTGAGGGATCT 59.823 50.000 17.36 17.36 36.66 2.75
626 1599 6.414987 GCTGTTCTAACAACATCTGAAAACAC 59.585 38.462 0.00 0.00 38.66 3.32
639 1612 5.185454 CCATAGACATGGCTGTTCTAACAA 58.815 41.667 12.69 0.00 45.29 2.83
719 1856 1.737008 GACTTCGACTTCCGGCCAC 60.737 63.158 2.24 0.00 39.14 5.01
722 1859 0.244178 AGAAGACTTCGACTTCCGGC 59.756 55.000 9.53 0.00 43.01 6.13
723 1860 1.269998 ACAGAAGACTTCGACTTCCGG 59.730 52.381 9.53 0.00 43.01 5.14
724 1861 2.287668 ACACAGAAGACTTCGACTTCCG 60.288 50.000 9.53 3.91 43.01 4.30
726 1863 4.551024 GCAAACACAGAAGACTTCGACTTC 60.551 45.833 9.53 6.22 42.53 3.01
735 1911 3.503363 TGGATGATGCAAACACAGAAGAC 59.497 43.478 0.00 0.00 0.00 3.01
766 1947 8.506168 AATAGAAGCTTTTATTGATTCGGTGA 57.494 30.769 18.63 0.00 35.31 4.02
856 2058 6.373774 CCAAGAGACAGCAAAGACAGATTAAT 59.626 38.462 0.00 0.00 0.00 1.40
953 2164 9.613428 TTGATGTGAGTTCTAATTTACCATAGG 57.387 33.333 0.00 0.00 0.00 2.57
956 2167 7.414098 GCGTTGATGTGAGTTCTAATTTACCAT 60.414 37.037 0.00 0.00 0.00 3.55
1009 2220 0.102663 GTTCTACCTCCGCTAGCACC 59.897 60.000 16.45 0.00 0.00 5.01
1033 2244 2.030893 TCAAAATGCTCGGCTTGTTCTG 60.031 45.455 0.00 0.00 0.00 3.02
1065 2276 4.639310 AGAAAGTCTAATGGCAGATGCTTG 59.361 41.667 4.59 0.00 41.70 4.01
1345 2580 6.843069 ACCAACTTTACAACATTTTCATGC 57.157 33.333 0.00 0.00 33.05 4.06
1536 2771 5.947228 TGTGTGACAAAGATTGAGAATCC 57.053 39.130 0.00 0.00 38.71 3.01
1581 2858 8.812972 GGAGGGAGTACATATATTGTCATTGTA 58.187 37.037 0.00 0.00 39.87 2.41
1582 2859 7.292356 TGGAGGGAGTACATATATTGTCATTGT 59.708 37.037 0.00 0.00 39.87 2.71
1599 2876 9.453830 AGACTTATATTTAGAAATGGAGGGAGT 57.546 33.333 0.00 0.00 0.00 3.85
1600 2877 9.717942 CAGACTTATATTTAGAAATGGAGGGAG 57.282 37.037 0.00 0.00 0.00 4.30
1601 2878 9.225682 ACAGACTTATATTTAGAAATGGAGGGA 57.774 33.333 0.00 0.00 0.00 4.20
1602 2879 9.853177 AACAGACTTATATTTAGAAATGGAGGG 57.147 33.333 0.00 0.00 0.00 4.30
1620 2897 9.245962 CCGTATCGAAATATCTAAAACAGACTT 57.754 33.333 0.00 0.00 35.62 3.01
1621 2898 8.627403 TCCGTATCGAAATATCTAAAACAGACT 58.373 33.333 0.00 0.00 35.62 3.24
1622 2899 8.689069 GTCCGTATCGAAATATCTAAAACAGAC 58.311 37.037 0.00 0.00 35.62 3.51
1623 2900 8.627403 AGTCCGTATCGAAATATCTAAAACAGA 58.373 33.333 0.00 0.00 37.79 3.41
1624 2901 8.798748 AGTCCGTATCGAAATATCTAAAACAG 57.201 34.615 0.00 0.00 0.00 3.16
1625 2902 9.669353 GTAGTCCGTATCGAAATATCTAAAACA 57.331 33.333 0.00 0.00 0.00 2.83
1626 2903 9.669353 TGTAGTCCGTATCGAAATATCTAAAAC 57.331 33.333 0.00 0.00 0.00 2.43
1630 2907 8.811378 CGTATGTAGTCCGTATCGAAATATCTA 58.189 37.037 0.00 0.00 0.00 1.98
1631 2908 7.201591 CCGTATGTAGTCCGTATCGAAATATCT 60.202 40.741 0.00 0.00 0.00 1.98
1632 2909 6.904011 CCGTATGTAGTCCGTATCGAAATATC 59.096 42.308 0.00 0.00 0.00 1.63
1633 2910 6.595326 TCCGTATGTAGTCCGTATCGAAATAT 59.405 38.462 0.00 0.00 0.00 1.28
1634 2911 5.931724 TCCGTATGTAGTCCGTATCGAAATA 59.068 40.000 0.00 0.00 0.00 1.40
1635 2912 4.756642 TCCGTATGTAGTCCGTATCGAAAT 59.243 41.667 0.00 0.00 0.00 2.17
1636 2913 4.126437 TCCGTATGTAGTCCGTATCGAAA 58.874 43.478 0.00 0.00 0.00 3.46
1637 2914 3.727726 TCCGTATGTAGTCCGTATCGAA 58.272 45.455 0.00 0.00 0.00 3.71
1638 2915 3.385193 TCCGTATGTAGTCCGTATCGA 57.615 47.619 0.00 0.00 0.00 3.59
1639 2916 3.434641 ACATCCGTATGTAGTCCGTATCG 59.565 47.826 0.00 0.00 44.66 2.92
1651 2928 6.964741 AGTACGTCTCTATACATCCGTATG 57.035 41.667 0.00 0.00 38.79 2.39
1652 2929 7.976135 AAAGTACGTCTCTATACATCCGTAT 57.024 36.000 0.00 0.00 41.34 3.06
1653 2930 8.360390 TCTAAAGTACGTCTCTATACATCCGTA 58.640 37.037 0.00 0.00 0.00 4.02
1654 2931 7.212976 TCTAAAGTACGTCTCTATACATCCGT 58.787 38.462 0.00 0.00 0.00 4.69
1655 2932 7.384660 ACTCTAAAGTACGTCTCTATACATCCG 59.615 40.741 0.00 0.00 32.59 4.18
1656 2933 8.497554 CACTCTAAAGTACGTCTCTATACATCC 58.502 40.741 0.00 0.00 33.25 3.51
1657 2934 9.044150 ACACTCTAAAGTACGTCTCTATACATC 57.956 37.037 0.00 0.00 33.25 3.06
1658 2935 8.961294 ACACTCTAAAGTACGTCTCTATACAT 57.039 34.615 0.00 0.00 33.25 2.29
1659 2936 9.526713 CTACACTCTAAAGTACGTCTCTATACA 57.473 37.037 0.00 0.00 33.25 2.29
1660 2937 9.743057 TCTACACTCTAAAGTACGTCTCTATAC 57.257 37.037 0.00 0.00 33.25 1.47
1662 2939 9.835389 AATCTACACTCTAAAGTACGTCTCTAT 57.165 33.333 0.00 0.00 33.25 1.98
1663 2940 9.311916 GAATCTACACTCTAAAGTACGTCTCTA 57.688 37.037 0.00 0.00 33.25 2.43
1664 2941 7.823310 TGAATCTACACTCTAAAGTACGTCTCT 59.177 37.037 0.00 0.00 33.25 3.10
1665 2942 7.904461 GTGAATCTACACTCTAAAGTACGTCTC 59.096 40.741 0.00 0.00 37.73 3.36
1666 2943 7.607223 AGTGAATCTACACTCTAAAGTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
1667 2944 7.750769 AGTGAATCTACACTCTAAAGTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
1668 2945 7.684937 AGTGAATCTACACTCTAAAGTACGT 57.315 36.000 0.00 0.00 46.36 3.57
1680 2957 7.426929 ACAGACAAAATGAGTGAATCTACAC 57.573 36.000 0.00 0.00 40.60 2.90
1681 2958 9.154847 CATACAGACAAAATGAGTGAATCTACA 57.845 33.333 0.00 0.00 0.00 2.74
1682 2959 9.155975 ACATACAGACAAAATGAGTGAATCTAC 57.844 33.333 0.00 0.00 0.00 2.59
1684 2961 9.376075 CTACATACAGACAAAATGAGTGAATCT 57.624 33.333 0.00 0.00 0.00 2.40
1685 2962 9.155975 ACTACATACAGACAAAATGAGTGAATC 57.844 33.333 0.00 0.00 0.00 2.52
1686 2963 9.507329 AACTACATACAGACAAAATGAGTGAAT 57.493 29.630 0.00 0.00 0.00 2.57
1687 2964 8.902540 AACTACATACAGACAAAATGAGTGAA 57.097 30.769 0.00 0.00 0.00 3.18
1688 2965 7.328493 CGAACTACATACAGACAAAATGAGTGA 59.672 37.037 0.00 0.00 0.00 3.41
1689 2966 7.116376 ACGAACTACATACAGACAAAATGAGTG 59.884 37.037 0.00 0.00 0.00 3.51
1690 2967 7.152645 ACGAACTACATACAGACAAAATGAGT 58.847 34.615 0.00 0.00 0.00 3.41
1691 2968 7.582435 ACGAACTACATACAGACAAAATGAG 57.418 36.000 0.00 0.00 0.00 2.90
1692 2969 7.274904 GCTACGAACTACATACAGACAAAATGA 59.725 37.037 0.00 0.00 0.00 2.57
1693 2970 7.391786 GCTACGAACTACATACAGACAAAATG 58.608 38.462 0.00 0.00 0.00 2.32
1694 2971 6.252869 CGCTACGAACTACATACAGACAAAAT 59.747 38.462 0.00 0.00 0.00 1.82
1695 2972 5.570206 CGCTACGAACTACATACAGACAAAA 59.430 40.000 0.00 0.00 0.00 2.44
1696 2973 5.090757 CGCTACGAACTACATACAGACAAA 58.909 41.667 0.00 0.00 0.00 2.83
1697 2974 4.437794 CCGCTACGAACTACATACAGACAA 60.438 45.833 0.00 0.00 0.00 3.18
1698 2975 3.064408 CCGCTACGAACTACATACAGACA 59.936 47.826 0.00 0.00 0.00 3.41
1699 2976 3.310774 TCCGCTACGAACTACATACAGAC 59.689 47.826 0.00 0.00 0.00 3.51
1700 2977 3.534554 TCCGCTACGAACTACATACAGA 58.465 45.455 0.00 0.00 0.00 3.41
1701 2978 3.957671 TCCGCTACGAACTACATACAG 57.042 47.619 0.00 0.00 0.00 2.74
1702 2979 4.577693 AGATTCCGCTACGAACTACATACA 59.422 41.667 0.00 0.00 0.00 2.29
1703 2980 5.049543 AGAGATTCCGCTACGAACTACATAC 60.050 44.000 0.00 0.00 0.00 2.39
1704 2981 5.061853 AGAGATTCCGCTACGAACTACATA 58.938 41.667 0.00 0.00 0.00 2.29
1705 2982 3.884091 AGAGATTCCGCTACGAACTACAT 59.116 43.478 0.00 0.00 0.00 2.29
1706 2983 3.276857 AGAGATTCCGCTACGAACTACA 58.723 45.455 0.00 0.00 0.00 2.74
1707 2984 3.967203 AGAGATTCCGCTACGAACTAC 57.033 47.619 0.00 0.00 0.00 2.73
1708 2985 4.063689 CCTAGAGATTCCGCTACGAACTA 58.936 47.826 0.00 0.00 0.00 2.24
1709 2986 2.879646 CCTAGAGATTCCGCTACGAACT 59.120 50.000 0.00 0.00 0.00 3.01
1710 2987 2.877168 TCCTAGAGATTCCGCTACGAAC 59.123 50.000 0.00 0.00 0.00 3.95
1711 2988 3.204306 TCCTAGAGATTCCGCTACGAA 57.796 47.619 0.00 0.00 0.00 3.85
1712 2989 2.924757 TCCTAGAGATTCCGCTACGA 57.075 50.000 0.00 0.00 0.00 3.43
1713 2990 3.058777 GTCTTCCTAGAGATTCCGCTACG 60.059 52.174 0.00 0.00 0.00 3.51
1714 2991 4.139038 AGTCTTCCTAGAGATTCCGCTAC 58.861 47.826 0.00 0.00 0.00 3.58
1715 2992 4.440826 AGTCTTCCTAGAGATTCCGCTA 57.559 45.455 0.00 0.00 0.00 4.26
1716 2993 3.306472 AGTCTTCCTAGAGATTCCGCT 57.694 47.619 0.00 0.00 0.00 5.52
1717 2994 5.715434 ATAAGTCTTCCTAGAGATTCCGC 57.285 43.478 0.00 0.00 0.00 5.54
1725 3002 9.075678 CCGTTCCTAAATATAAGTCTTCCTAGA 57.924 37.037 0.00 0.00 0.00 2.43
1726 3003 9.075678 TCCGTTCCTAAATATAAGTCTTCCTAG 57.924 37.037 0.00 0.00 0.00 3.02
1727 3004 9.075678 CTCCGTTCCTAAATATAAGTCTTCCTA 57.924 37.037 0.00 0.00 0.00 2.94
1728 3005 7.015389 CCTCCGTTCCTAAATATAAGTCTTCCT 59.985 40.741 0.00 0.00 0.00 3.36
1729 3006 7.153315 CCTCCGTTCCTAAATATAAGTCTTCC 58.847 42.308 0.00 0.00 0.00 3.46
1730 3007 7.015001 TCCCTCCGTTCCTAAATATAAGTCTTC 59.985 40.741 0.00 0.00 0.00 2.87
1731 3008 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1732 3009 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1733 3010 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1734 3011 6.041751 CACTCCCTCCGTTCCTAAATATAAGT 59.958 42.308 0.00 0.00 0.00 2.24
1735 3012 6.456501 CACTCCCTCCGTTCCTAAATATAAG 58.543 44.000 0.00 0.00 0.00 1.73
1736 3013 5.221581 GCACTCCCTCCGTTCCTAAATATAA 60.222 44.000 0.00 0.00 0.00 0.98
1737 3014 4.282703 GCACTCCCTCCGTTCCTAAATATA 59.717 45.833 0.00 0.00 0.00 0.86
1738 3015 3.071167 GCACTCCCTCCGTTCCTAAATAT 59.929 47.826 0.00 0.00 0.00 1.28
1739 3016 2.433239 GCACTCCCTCCGTTCCTAAATA 59.567 50.000 0.00 0.00 0.00 1.40
1740 3017 1.209747 GCACTCCCTCCGTTCCTAAAT 59.790 52.381 0.00 0.00 0.00 1.40
1741 3018 0.611714 GCACTCCCTCCGTTCCTAAA 59.388 55.000 0.00 0.00 0.00 1.85
1742 3019 0.543410 TGCACTCCCTCCGTTCCTAA 60.543 55.000 0.00 0.00 0.00 2.69
1743 3020 0.543410 TTGCACTCCCTCCGTTCCTA 60.543 55.000 0.00 0.00 0.00 2.94
1744 3021 1.841556 TTGCACTCCCTCCGTTCCT 60.842 57.895 0.00 0.00 0.00 3.36
1745 3022 1.671379 GTTGCACTCCCTCCGTTCC 60.671 63.158 0.00 0.00 0.00 3.62
1746 3023 0.951040 CTGTTGCACTCCCTCCGTTC 60.951 60.000 0.00 0.00 0.00 3.95
1747 3024 1.071471 CTGTTGCACTCCCTCCGTT 59.929 57.895 0.00 0.00 0.00 4.44
1748 3025 1.696097 AACTGTTGCACTCCCTCCGT 61.696 55.000 0.00 0.00 0.00 4.69
1749 3026 1.071471 AACTGTTGCACTCCCTCCG 59.929 57.895 0.00 0.00 0.00 4.63
1750 3027 0.108585 TCAACTGTTGCACTCCCTCC 59.891 55.000 15.52 0.00 0.00 4.30
1751 3028 1.230324 GTCAACTGTTGCACTCCCTC 58.770 55.000 15.52 0.00 0.00 4.30
1752 3029 0.546122 TGTCAACTGTTGCACTCCCT 59.454 50.000 15.52 0.00 0.00 4.20
1753 3030 1.267806 CATGTCAACTGTTGCACTCCC 59.732 52.381 15.52 0.59 0.00 4.30
1754 3031 2.221169 TCATGTCAACTGTTGCACTCC 58.779 47.619 15.52 2.17 0.00 3.85
1755 3032 3.499537 TGATCATGTCAACTGTTGCACTC 59.500 43.478 15.52 13.21 32.78 3.51
1756 3033 3.479489 TGATCATGTCAACTGTTGCACT 58.521 40.909 15.52 6.09 32.78 4.40
1757 3034 3.902261 TGATCATGTCAACTGTTGCAC 57.098 42.857 15.52 13.96 32.78 4.57
2137 3428 9.961265 ATCACAAATTTATCACAGCTCATAATG 57.039 29.630 0.00 0.00 0.00 1.90
2178 3473 4.337555 CCAGAGAGGTTAGGATGCAATTTG 59.662 45.833 0.00 0.00 0.00 2.32
2279 3583 7.067859 ACGCCTAAACTGTATATGTCTGACTTA 59.932 37.037 9.51 7.58 0.00 2.24
2520 3827 7.715249 GCTTTTAATGATGGGTACTCTGATACA 59.285 37.037 0.00 0.00 0.00 2.29
2800 4107 8.579863 GCAGATAAGGGTTGCAAATATCTTAAT 58.420 33.333 16.52 7.81 37.75 1.40
2964 4313 7.823149 ATTTCATACACAGGTTACGAGTTAC 57.177 36.000 0.00 0.00 0.00 2.50
2970 4319 7.359262 TCTGAAATTTCATACACAGGTTACG 57.641 36.000 20.76 5.28 36.46 3.18
3073 4425 9.079833 CATAGCAAATTATTCCAAGTTTGTCAG 57.920 33.333 0.00 0.00 34.82 3.51
3144 4506 4.389890 TCACCAAGAAAATATGCATGGC 57.610 40.909 10.16 0.00 0.00 4.40
3150 4514 7.636150 AGAACTCCATCACCAAGAAAATATG 57.364 36.000 0.00 0.00 0.00 1.78
3194 4558 1.002468 CTGAAACTGAACAGGCAACCG 60.002 52.381 6.76 0.00 37.17 4.44
3205 4569 9.023962 AGAATTATTATTTGGCACTGAAACTGA 57.976 29.630 0.00 0.00 0.00 3.41
3338 4702 5.800653 AGTCCTAGGGTATACCATCCTTTT 58.199 41.667 23.33 0.98 43.89 2.27
3345 4709 4.043059 CAGAGCTAGTCCTAGGGTATACCA 59.957 50.000 23.33 2.92 43.89 3.25
3347 4711 4.011698 GCAGAGCTAGTCCTAGGGTATAC 58.988 52.174 9.46 0.00 33.87 1.47
3359 4723 5.178797 ACAATTAATTGACGCAGAGCTAGT 58.821 37.500 30.18 4.50 40.14 2.57
3370 4734 5.907391 GGCTACGTGCATACAATTAATTGAC 59.093 40.000 30.18 17.80 45.15 3.18
3397 4761 6.173339 TGCCTTTGAGGTTTCTTAGTATCTG 58.827 40.000 0.00 0.00 37.80 2.90
3500 4865 1.211703 ACTCATGTGTTGTCACCACCA 59.788 47.619 0.00 0.00 43.26 4.17
3502 4867 2.287915 GTCACTCATGTGTTGTCACCAC 59.712 50.000 0.00 0.00 44.14 4.16
3512 4877 4.698780 ACCATCATTGAAGTCACTCATGTG 59.301 41.667 0.00 0.00 45.07 3.21
3517 4882 3.341823 AGCACCATCATTGAAGTCACTC 58.658 45.455 0.00 0.00 0.00 3.51
3518 4883 3.430042 AGCACCATCATTGAAGTCACT 57.570 42.857 0.00 0.00 0.00 3.41
3523 4888 3.961182 GCATGTAGCACCATCATTGAAG 58.039 45.455 0.00 0.00 44.79 3.02
3537 4902 0.817654 TCGAGACTGGGTGCATGTAG 59.182 55.000 0.00 0.00 0.00 2.74
3538 4903 0.817654 CTCGAGACTGGGTGCATGTA 59.182 55.000 6.58 0.00 0.00 2.29
3549 4914 1.749638 CACCCCGTAGCTCGAGACT 60.750 63.158 18.75 15.13 42.86 3.24
3559 4924 0.252375 ACCTAGGCTTTCACCCCGTA 60.252 55.000 9.30 0.00 0.00 4.02
3560 4925 1.538135 ACCTAGGCTTTCACCCCGT 60.538 57.895 9.30 0.00 0.00 5.28
3613 4978 4.266265 GGCAAGGTAACGACGTAGATAAAC 59.734 45.833 0.00 0.00 46.39 2.01
3619 4984 0.168788 TCGGCAAGGTAACGACGTAG 59.831 55.000 0.00 0.00 46.39 3.51
3637 5002 6.037940 TCAGAGCATATTCAAGCAATGTCTTC 59.962 38.462 0.00 0.00 0.00 2.87
3657 5022 5.713792 TCACCTTGAAGAGTTAGTCAGAG 57.286 43.478 0.00 0.00 0.00 3.35
3665 5030 3.953542 AGGGTTTCACCTTGAAGAGTT 57.046 42.857 0.00 0.00 37.69 3.01
3692 5057 1.765074 GACCCAACTACCAAGGCCA 59.235 57.895 5.01 0.00 0.00 5.36
3694 5059 1.376812 CGGACCCAACTACCAAGGC 60.377 63.158 0.00 0.00 0.00 4.35
3712 5077 4.400109 TCGAGCGTCGCAGTCACC 62.400 66.667 21.09 0.17 40.21 4.02
3713 5078 2.872001 CTCGAGCGTCGCAGTCAC 60.872 66.667 21.09 4.34 40.21 3.67
3714 5079 4.760840 GCTCGAGCGTCGCAGTCA 62.761 66.667 23.61 0.00 40.21 3.41
3715 5080 4.760840 TGCTCGAGCGTCGCAGTC 62.761 66.667 30.75 8.24 45.83 3.51
3716 5081 4.121669 ATGCTCGAGCGTCGCAGT 62.122 61.111 30.75 8.96 45.83 4.40
3717 5082 3.318555 GATGCTCGAGCGTCGCAG 61.319 66.667 36.33 13.06 45.68 5.18
3721 5086 3.021788 GAGCGATGCTCGAGCGTC 61.022 66.667 38.31 38.31 45.85 5.19
3729 5094 1.137872 CTTCAGTAAGGGAGCGATGCT 59.862 52.381 0.00 0.00 43.88 3.79
3730 5095 1.576356 CTTCAGTAAGGGAGCGATGC 58.424 55.000 0.00 0.00 0.00 3.91
3740 5105 4.044426 GCAACAACAAAGCCTTCAGTAAG 58.956 43.478 0.00 0.00 0.00 2.34
3741 5106 3.445450 TGCAACAACAAAGCCTTCAGTAA 59.555 39.130 0.00 0.00 0.00 2.24
3742 5107 3.020274 TGCAACAACAAAGCCTTCAGTA 58.980 40.909 0.00 0.00 0.00 2.74
3743 5108 1.824230 TGCAACAACAAAGCCTTCAGT 59.176 42.857 0.00 0.00 0.00 3.41
3744 5109 2.582728 TGCAACAACAAAGCCTTCAG 57.417 45.000 0.00 0.00 0.00 3.02
3745 5110 3.325293 TTTGCAACAACAAAGCCTTCA 57.675 38.095 0.00 0.00 34.68 3.02
3746 5111 4.571984 AGATTTTGCAACAACAAAGCCTTC 59.428 37.500 0.00 0.00 40.43 3.46
3747 5112 4.516323 AGATTTTGCAACAACAAAGCCTT 58.484 34.783 0.00 0.00 40.43 4.35
3748 5113 4.122046 GAGATTTTGCAACAACAAAGCCT 58.878 39.130 0.00 0.00 40.43 4.58
3749 5114 3.060339 CGAGATTTTGCAACAACAAAGCC 60.060 43.478 0.00 0.00 40.43 4.35
3750 5115 3.551485 ACGAGATTTTGCAACAACAAAGC 59.449 39.130 0.00 0.00 40.43 3.51
3751 5116 4.797868 TGACGAGATTTTGCAACAACAAAG 59.202 37.500 0.00 0.00 40.43 2.77
3752 5117 4.738124 TGACGAGATTTTGCAACAACAAA 58.262 34.783 0.00 0.00 37.74 2.83
3753 5118 4.362932 TGACGAGATTTTGCAACAACAA 57.637 36.364 0.00 0.00 0.00 2.83
3754 5119 4.566545 ATGACGAGATTTTGCAACAACA 57.433 36.364 0.00 0.00 0.00 3.33
3755 5120 4.549599 CGTATGACGAGATTTTGCAACAAC 59.450 41.667 0.00 0.00 46.05 3.32
3756 5121 4.212425 ACGTATGACGAGATTTTGCAACAA 59.788 37.500 0.00 0.00 46.05 2.83
3757 5122 3.743911 ACGTATGACGAGATTTTGCAACA 59.256 39.130 0.00 0.00 46.05 3.33
3758 5123 4.081761 CACGTATGACGAGATTTTGCAAC 58.918 43.478 0.00 0.00 46.05 4.17
3759 5124 3.743911 ACACGTATGACGAGATTTTGCAA 59.256 39.130 5.94 0.00 46.05 4.08
3760 5125 3.322369 ACACGTATGACGAGATTTTGCA 58.678 40.909 5.94 0.00 46.05 4.08
3761 5126 3.991605 ACACGTATGACGAGATTTTGC 57.008 42.857 5.94 0.00 46.05 3.68
3762 5127 6.989437 ACATTACACGTATGACGAGATTTTG 58.011 36.000 5.94 0.00 46.05 2.44
3763 5128 6.809689 TGACATTACACGTATGACGAGATTTT 59.190 34.615 5.94 0.00 46.05 1.82
3764 5129 6.327154 TGACATTACACGTATGACGAGATTT 58.673 36.000 5.94 0.00 46.05 2.17
3765 5130 5.886992 TGACATTACACGTATGACGAGATT 58.113 37.500 5.94 0.00 46.05 2.40
3766 5131 5.494632 TGACATTACACGTATGACGAGAT 57.505 39.130 5.94 0.00 46.05 2.75
3767 5132 4.950434 TGACATTACACGTATGACGAGA 57.050 40.909 5.94 0.00 46.05 4.04
3768 5133 5.270853 TCATGACATTACACGTATGACGAG 58.729 41.667 5.94 0.03 46.05 4.18
3769 5134 5.238006 TCATGACATTACACGTATGACGA 57.762 39.130 5.94 0.00 46.05 4.20
3770 5135 7.253950 TCATTTCATGACATTACACGTATGACG 60.254 37.037 3.85 0.00 40.13 4.35
3771 5136 7.905126 TCATTTCATGACATTACACGTATGAC 58.095 34.615 3.85 0.00 33.59 3.06
3772 5137 8.661352 ATCATTTCATGACATTACACGTATGA 57.339 30.769 3.85 0.00 43.01 2.15
3773 5138 8.550376 TGATCATTTCATGACATTACACGTATG 58.450 33.333 0.00 0.00 43.01 2.39
3774 5139 8.661352 TGATCATTTCATGACATTACACGTAT 57.339 30.769 0.00 0.00 43.01 3.06
3775 5140 8.661352 ATGATCATTTCATGACATTACACGTA 57.339 30.769 1.18 0.00 43.60 3.57
3776 5141 6.983474 TGATCATTTCATGACATTACACGT 57.017 33.333 0.00 0.00 43.01 4.49
3777 5142 8.845942 AAATGATCATTTCATGACATTACACG 57.154 30.769 24.83 0.00 44.51 4.49
3784 5149 9.984190 TTTCTCAAAAATGATCATTTCATGACA 57.016 25.926 29.08 20.92 44.51 3.58
3786 5151 9.984190 TGTTTCTCAAAAATGATCATTTCATGA 57.016 25.926 29.22 29.22 44.51 3.07
3791 5156 9.485206 CCTCTTGTTTCTCAAAAATGATCATTT 57.515 29.630 24.83 24.83 42.35 2.32
3792 5157 8.863086 TCCTCTTGTTTCTCAAAAATGATCATT 58.137 29.630 15.36 15.36 35.48 2.57
3793 5158 8.413309 TCCTCTTGTTTCTCAAAAATGATCAT 57.587 30.769 1.18 1.18 35.48 2.45
3794 5159 7.720957 TCTCCTCTTGTTTCTCAAAAATGATCA 59.279 33.333 0.00 0.00 35.48 2.92
3795 5160 8.020244 GTCTCCTCTTGTTTCTCAAAAATGATC 58.980 37.037 0.00 0.00 35.48 2.92
3796 5161 7.503566 TGTCTCCTCTTGTTTCTCAAAAATGAT 59.496 33.333 0.00 0.00 35.48 2.45
3797 5162 6.828273 TGTCTCCTCTTGTTTCTCAAAAATGA 59.172 34.615 0.00 0.00 35.48 2.57
3798 5163 7.012704 TCTGTCTCCTCTTGTTTCTCAAAAATG 59.987 37.037 0.00 0.00 35.48 2.32
3799 5164 7.056635 TCTGTCTCCTCTTGTTTCTCAAAAAT 58.943 34.615 0.00 0.00 35.48 1.82
3800 5165 6.414732 TCTGTCTCCTCTTGTTTCTCAAAAA 58.585 36.000 0.00 0.00 35.48 1.94
3801 5166 5.989477 TCTGTCTCCTCTTGTTTCTCAAAA 58.011 37.500 0.00 0.00 35.48 2.44
3802 5167 5.453903 CCTCTGTCTCCTCTTGTTTCTCAAA 60.454 44.000 0.00 0.00 35.48 2.69
3803 5168 4.039730 CCTCTGTCTCCTCTTGTTTCTCAA 59.960 45.833 0.00 0.00 34.61 3.02
3804 5169 3.576118 CCTCTGTCTCCTCTTGTTTCTCA 59.424 47.826 0.00 0.00 0.00 3.27
3805 5170 3.056179 CCCTCTGTCTCCTCTTGTTTCTC 60.056 52.174 0.00 0.00 0.00 2.87
3806 5171 2.903135 CCCTCTGTCTCCTCTTGTTTCT 59.097 50.000 0.00 0.00 0.00 2.52
3807 5172 2.900546 TCCCTCTGTCTCCTCTTGTTTC 59.099 50.000 0.00 0.00 0.00 2.78
3808 5173 2.977808 TCCCTCTGTCTCCTCTTGTTT 58.022 47.619 0.00 0.00 0.00 2.83
3809 5174 2.704190 TCCCTCTGTCTCCTCTTGTT 57.296 50.000 0.00 0.00 0.00 2.83
3810 5175 2.704190 TTCCCTCTGTCTCCTCTTGT 57.296 50.000 0.00 0.00 0.00 3.16
3811 5176 3.169099 TCTTTCCCTCTGTCTCCTCTTG 58.831 50.000 0.00 0.00 0.00 3.02
3812 5177 3.551635 TCTTTCCCTCTGTCTCCTCTT 57.448 47.619 0.00 0.00 0.00 2.85
3813 5178 3.169908 GTTCTTTCCCTCTGTCTCCTCT 58.830 50.000 0.00 0.00 0.00 3.69
3814 5179 2.900546 TGTTCTTTCCCTCTGTCTCCTC 59.099 50.000 0.00 0.00 0.00 3.71
3815 5180 2.903135 CTGTTCTTTCCCTCTGTCTCCT 59.097 50.000 0.00 0.00 0.00 3.69
3816 5181 2.900546 TCTGTTCTTTCCCTCTGTCTCC 59.099 50.000 0.00 0.00 0.00 3.71
3817 5182 4.565022 CTTCTGTTCTTTCCCTCTGTCTC 58.435 47.826 0.00 0.00 0.00 3.36
3818 5183 3.244387 GCTTCTGTTCTTTCCCTCTGTCT 60.244 47.826 0.00 0.00 0.00 3.41
3819 5184 3.070748 GCTTCTGTTCTTTCCCTCTGTC 58.929 50.000 0.00 0.00 0.00 3.51
3820 5185 2.439507 TGCTTCTGTTCTTTCCCTCTGT 59.560 45.455 0.00 0.00 0.00 3.41
3821 5186 3.131709 TGCTTCTGTTCTTTCCCTCTG 57.868 47.619 0.00 0.00 0.00 3.35
3822 5187 3.864789 TTGCTTCTGTTCTTTCCCTCT 57.135 42.857 0.00 0.00 0.00 3.69
3823 5188 4.321527 CCAATTGCTTCTGTTCTTTCCCTC 60.322 45.833 0.00 0.00 0.00 4.30
3824 5189 3.575687 CCAATTGCTTCTGTTCTTTCCCT 59.424 43.478 0.00 0.00 0.00 4.20
3825 5190 3.862264 GCCAATTGCTTCTGTTCTTTCCC 60.862 47.826 0.00 0.00 36.87 3.97
3826 5191 3.320626 GCCAATTGCTTCTGTTCTTTCC 58.679 45.455 0.00 0.00 36.87 3.13
3839 5204 2.046285 ACCGCACCTAGCCAATTGC 61.046 57.895 0.00 0.00 41.38 3.56
3840 5205 1.656818 CCACCGCACCTAGCCAATTG 61.657 60.000 0.00 0.00 41.38 2.32
3841 5206 1.378514 CCACCGCACCTAGCCAATT 60.379 57.895 0.00 0.00 41.38 2.32
3842 5207 2.272146 CCACCGCACCTAGCCAAT 59.728 61.111 0.00 0.00 41.38 3.16
3843 5208 4.715523 GCCACCGCACCTAGCCAA 62.716 66.667 0.00 0.00 41.38 4.52
3860 5225 1.665161 GGCGTAGGATGACGATAACGG 60.665 57.143 0.00 0.00 45.82 4.44
3861 5226 1.665161 GGGCGTAGGATGACGATAACG 60.665 57.143 0.00 0.00 45.82 3.18
3862 5227 1.665161 CGGGCGTAGGATGACGATAAC 60.665 57.143 0.00 0.00 45.82 1.89
3863 5228 0.594602 CGGGCGTAGGATGACGATAA 59.405 55.000 0.00 0.00 45.82 1.75
3864 5229 0.535780 ACGGGCGTAGGATGACGATA 60.536 55.000 0.00 0.00 45.82 2.92
3865 5230 1.793134 GACGGGCGTAGGATGACGAT 61.793 60.000 0.00 0.00 45.82 3.73
3866 5231 2.438975 ACGGGCGTAGGATGACGA 60.439 61.111 0.00 0.00 45.82 4.20
3867 5232 1.162181 TAGACGGGCGTAGGATGACG 61.162 60.000 0.00 0.00 45.70 4.35
3868 5233 0.310232 GTAGACGGGCGTAGGATGAC 59.690 60.000 0.00 0.00 0.00 3.06
3869 5234 0.107066 TGTAGACGGGCGTAGGATGA 60.107 55.000 0.00 0.00 0.00 2.92
3870 5235 0.311165 CTGTAGACGGGCGTAGGATG 59.689 60.000 0.00 0.00 0.00 3.51
3871 5236 0.106819 ACTGTAGACGGGCGTAGGAT 60.107 55.000 0.00 0.00 0.00 3.24
3872 5237 0.745845 GACTGTAGACGGGCGTAGGA 60.746 60.000 0.00 0.00 0.00 2.94
3873 5238 1.722636 GGACTGTAGACGGGCGTAGG 61.723 65.000 0.00 0.00 0.00 3.18
3874 5239 1.722636 GGGACTGTAGACGGGCGTAG 61.723 65.000 0.00 0.00 0.00 3.51
3875 5240 1.750399 GGGACTGTAGACGGGCGTA 60.750 63.158 0.00 0.00 0.00 4.42
3876 5241 3.066814 GGGACTGTAGACGGGCGT 61.067 66.667 0.00 0.00 0.00 5.68
3877 5242 4.189188 CGGGACTGTAGACGGGCG 62.189 72.222 0.00 0.00 0.00 6.13
3878 5243 3.066814 ACGGGACTGTAGACGGGC 61.067 66.667 0.00 0.00 0.00 6.13
3879 5244 1.654954 CTCACGGGACTGTAGACGGG 61.655 65.000 0.00 0.00 0.00 5.28
3880 5245 1.654954 CCTCACGGGACTGTAGACGG 61.655 65.000 0.00 0.00 37.23 4.79
3881 5246 1.801332 CCTCACGGGACTGTAGACG 59.199 63.158 0.00 0.00 37.23 4.18
3882 5247 1.511768 GCCTCACGGGACTGTAGAC 59.488 63.158 0.00 0.00 37.23 2.59
3883 5248 1.681327 GGCCTCACGGGACTGTAGA 60.681 63.158 0.00 0.00 40.87 2.59
3884 5249 2.722201 GGGCCTCACGGGACTGTAG 61.722 68.421 0.84 0.00 44.42 2.74
3885 5250 2.682494 GGGCCTCACGGGACTGTA 60.682 66.667 0.84 0.00 44.42 2.74
3886 5251 4.954118 TGGGCCTCACGGGACTGT 62.954 66.667 4.53 0.00 44.42 3.55
3887 5252 2.690653 TTTTGGGCCTCACGGGACTG 62.691 60.000 4.53 0.00 44.42 3.51
3888 5253 2.457323 TTTTGGGCCTCACGGGACT 61.457 57.895 4.53 0.00 44.42 3.85
3889 5254 2.114411 TTTTGGGCCTCACGGGAC 59.886 61.111 4.53 0.00 44.23 4.46
3890 5255 1.128809 TAGTTTTGGGCCTCACGGGA 61.129 55.000 4.53 0.00 37.23 5.14
3891 5256 0.034477 ATAGTTTTGGGCCTCACGGG 60.034 55.000 4.53 0.00 38.36 5.28
3892 5257 2.702592 TATAGTTTTGGGCCTCACGG 57.297 50.000 4.53 0.00 0.00 4.94
3893 5258 2.878406 CCATATAGTTTTGGGCCTCACG 59.122 50.000 4.53 0.00 0.00 4.35
3894 5259 2.623416 GCCATATAGTTTTGGGCCTCAC 59.377 50.000 4.53 0.00 38.70 3.51
3895 5260 2.748132 CGCCATATAGTTTTGGGCCTCA 60.748 50.000 4.53 0.00 41.58 3.86
3896 5261 1.880027 CGCCATATAGTTTTGGGCCTC 59.120 52.381 4.53 0.00 41.58 4.70
3897 5262 1.981256 CGCCATATAGTTTTGGGCCT 58.019 50.000 4.53 0.00 41.58 5.19
3898 5263 0.313987 GCGCCATATAGTTTTGGGCC 59.686 55.000 0.00 0.00 41.58 5.80
3899 5264 0.313987 GGCGCCATATAGTTTTGGGC 59.686 55.000 24.80 0.00 41.20 5.36
3900 5265 1.686355 TGGCGCCATATAGTTTTGGG 58.314 50.000 29.03 0.00 33.40 4.12
3901 5266 3.440173 CCTATGGCGCCATATAGTTTTGG 59.560 47.826 41.29 32.70 38.13 3.28
3902 5267 3.119849 GCCTATGGCGCCATATAGTTTTG 60.120 47.826 41.29 28.97 39.62 2.44
3903 5268 3.081804 GCCTATGGCGCCATATAGTTTT 58.918 45.455 41.29 23.02 39.62 2.43
3904 5269 2.711542 GCCTATGGCGCCATATAGTTT 58.288 47.619 41.29 23.75 39.62 2.66
3905 5270 2.403252 GCCTATGGCGCCATATAGTT 57.597 50.000 41.29 24.48 39.62 2.24
3917 5282 3.749088 TGAACTGTAAACGTTGCCTATGG 59.251 43.478 0.00 0.00 0.00 2.74
3918 5283 5.545658 ATGAACTGTAAACGTTGCCTATG 57.454 39.130 0.00 0.00 0.00 2.23
3919 5284 6.569179 AAATGAACTGTAAACGTTGCCTAT 57.431 33.333 0.00 0.00 0.00 2.57
3920 5285 6.202937 CAAAATGAACTGTAAACGTTGCCTA 58.797 36.000 0.00 0.00 0.00 3.93
3921 5286 4.911514 AAATGAACTGTAAACGTTGCCT 57.088 36.364 0.00 0.00 0.00 4.75
3922 5287 4.317769 GCAAAATGAACTGTAAACGTTGCC 60.318 41.667 0.00 0.00 34.26 4.52
3923 5288 4.266502 TGCAAAATGAACTGTAAACGTTGC 59.733 37.500 0.00 0.00 39.35 4.17
3924 5289 5.940603 TGCAAAATGAACTGTAAACGTTG 57.059 34.783 0.00 0.00 0.00 4.10
3925 5290 6.588373 AGTTTGCAAAATGAACTGTAAACGTT 59.412 30.769 14.67 0.00 46.42 3.99
3926 5291 6.034470 CAGTTTGCAAAATGAACTGTAAACGT 59.966 34.615 30.35 0.00 46.42 3.99
3927 5292 6.402017 CAGTTTGCAAAATGAACTGTAAACG 58.598 36.000 30.35 2.54 46.42 3.60
3928 5293 6.238076 CCCAGTTTGCAAAATGAACTGTAAAC 60.238 38.462 34.25 10.63 45.39 2.01
3929 5294 5.814705 CCCAGTTTGCAAAATGAACTGTAAA 59.185 36.000 34.25 0.00 45.39 2.01
3930 5295 5.355596 CCCAGTTTGCAAAATGAACTGTAA 58.644 37.500 34.25 0.00 45.39 2.41
3931 5296 4.202202 CCCCAGTTTGCAAAATGAACTGTA 60.202 41.667 34.25 0.00 45.39 2.74
3932 5297 3.432046 CCCCAGTTTGCAAAATGAACTGT 60.432 43.478 34.25 0.00 45.39 3.55
3933 5298 3.132925 CCCCAGTTTGCAAAATGAACTG 58.867 45.455 34.25 25.62 46.04 3.16
3934 5299 2.485302 GCCCCAGTTTGCAAAATGAACT 60.485 45.455 34.25 16.89 36.17 3.01
3935 5300 1.872952 GCCCCAGTTTGCAAAATGAAC 59.127 47.619 34.25 21.15 36.17 3.18
3936 5301 1.539929 CGCCCCAGTTTGCAAAATGAA 60.540 47.619 34.25 2.09 36.17 2.57
3937 5302 0.033228 CGCCCCAGTTTGCAAAATGA 59.967 50.000 34.25 2.51 36.17 2.57
3938 5303 1.567746 GCGCCCCAGTTTGCAAAATG 61.568 55.000 27.98 27.98 34.07 2.32
3939 5304 1.301637 GCGCCCCAGTTTGCAAAAT 60.302 52.632 14.67 10.45 0.00 1.82
3940 5305 2.107953 GCGCCCCAGTTTGCAAAA 59.892 55.556 14.67 0.00 0.00 2.44
3941 5306 3.150335 TGCGCCCCAGTTTGCAAA 61.150 55.556 8.05 8.05 33.80 3.68
3942 5307 3.910490 GTGCGCCCCAGTTTGCAA 61.910 61.111 4.18 0.00 39.34 4.08
3955 5320 4.154347 GAGCAGAGAGGGGGTGCG 62.154 72.222 0.00 0.00 42.26 5.34
3956 5321 2.686835 AGAGCAGAGAGGGGGTGC 60.687 66.667 0.00 0.00 37.48 5.01
3957 5322 2.365586 CCAGAGCAGAGAGGGGGTG 61.366 68.421 0.00 0.00 0.00 4.61
3958 5323 2.040278 CCAGAGCAGAGAGGGGGT 59.960 66.667 0.00 0.00 0.00 4.95
3959 5324 2.767496 CCCAGAGCAGAGAGGGGG 60.767 72.222 0.00 0.00 37.66 5.40
3960 5325 3.478274 GCCCAGAGCAGAGAGGGG 61.478 72.222 0.00 0.00 41.75 4.79
3975 5340 0.033109 AAGAGGTTAATGGGCCAGCC 60.033 55.000 13.78 11.56 0.00 4.85
3976 5341 3.596362 AAGAGGTTAATGGGCCAGC 57.404 52.632 13.78 1.78 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.