Multiple sequence alignment - TraesCS2A01G023600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G023600 chr2A 100.000 2777 0 0 1 2777 11614726 11611950 0.000000e+00 5129.0
1 TraesCS2A01G023600 chr2D 91.099 2101 100 27 408 2449 10907133 10905061 0.000000e+00 2763.0
2 TraesCS2A01G023600 chr2B 94.481 1069 51 5 1007 2071 16335021 16333957 0.000000e+00 1640.0
3 TraesCS2A01G023600 chr2B 89.045 712 65 7 306 1010 16335758 16335053 0.000000e+00 870.0
4 TraesCS2A01G023600 chr2B 91.262 206 17 1 2460 2664 16328973 16328768 2.110000e-71 279.0
5 TraesCS2A01G023600 chr2B 93.168 161 10 1 2296 2456 16331833 16331674 4.620000e-58 235.0
6 TraesCS2A01G023600 chr2B 94.872 117 5 1 2642 2757 25365975 25366091 6.110000e-42 182.0
7 TraesCS2A01G023600 chr3D 97.297 111 3 0 2650 2760 381640916 381640806 3.650000e-44 189.0
8 TraesCS2A01G023600 chr3B 96.491 114 4 0 2651 2764 779534223 779534336 3.650000e-44 189.0
9 TraesCS2A01G023600 chr3B 97.273 110 3 0 2651 2760 70582106 70582215 1.310000e-43 187.0
10 TraesCS2A01G023600 chr3B 82.569 109 13 6 2487 2592 439458403 439458508 1.060000e-14 91.6
11 TraesCS2A01G023600 chr1A 97.273 110 3 0 2651 2760 387511355 387511464 1.310000e-43 187.0
12 TraesCS2A01G023600 chr1A 95.690 116 4 1 2644 2758 119717411 119717296 4.720000e-43 185.0
13 TraesCS2A01G023600 chr1A 97.248 109 3 0 2650 2758 489400811 489400703 4.720000e-43 185.0
14 TraesCS2A01G023600 chr5A 97.248 109 3 0 2651 2759 350570284 350570176 4.720000e-43 185.0
15 TraesCS2A01G023600 chr7D 94.828 116 6 0 2651 2766 227507121 227507236 6.110000e-42 182.0
16 TraesCS2A01G023600 chr5D 82.237 152 19 6 2413 2560 444369347 444369494 1.040000e-24 124.0
17 TraesCS2A01G023600 chr4B 89.062 64 4 3 2498 2560 559305252 559305313 2.970000e-10 76.8
18 TraesCS2A01G023600 chr5B 94.000 50 1 2 2413 2461 659178197 659178149 1.070000e-09 75.0
19 TraesCS2A01G023600 chr6B 75.694 144 24 9 2412 2549 504138320 504138458 8.300000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G023600 chr2A 11611950 11614726 2776 True 5129 5129 100.000 1 2777 1 chr2A.!!$R1 2776
1 TraesCS2A01G023600 chr2D 10905061 10907133 2072 True 2763 2763 91.099 408 2449 1 chr2D.!!$R1 2041
2 TraesCS2A01G023600 chr2B 16328768 16335758 6990 True 756 1640 91.989 306 2664 4 chr2B.!!$R1 2358

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.030908 CCGGAGAAGTCGACATAGCC 59.969 60.0 19.50 12.35 0.00 3.93 F
52 53 0.030908 CGGAGAAGTCGACATAGCCC 59.969 60.0 19.50 10.68 0.00 5.19 F
98 99 0.036875 GGCTCTACCACAGTTGCCTT 59.963 55.0 0.00 0.00 39.85 4.35 F
257 258 0.039617 GCGCCAATTGTGTGCTTACA 60.040 50.0 19.09 0.00 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1149 1201 1.227704 CCCACGGTACACAACAGCA 60.228 57.895 0.0 0.0 0.0 4.41 R
1449 1501 5.238432 TCAATTGCTCATACGTGTTTGAAGT 59.762 36.000 0.0 0.0 0.0 3.01 R
1450 1502 5.688823 TCAATTGCTCATACGTGTTTGAAG 58.311 37.500 0.0 0.0 0.0 3.02 R
2231 2308 1.476833 CCCCCAACTTACATCATCCCG 60.477 57.143 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.772169 AGGGCATTTATATCTTCTTGAAGGC 59.228 40.000 10.08 3.70 0.00 4.35
25 26 5.536161 GGGCATTTATATCTTCTTGAAGGCA 59.464 40.000 10.08 0.11 0.00 4.75
26 27 6.210185 GGGCATTTATATCTTCTTGAAGGCAT 59.790 38.462 10.08 6.67 0.00 4.40
27 28 7.256083 GGGCATTTATATCTTCTTGAAGGCATT 60.256 37.037 10.08 0.00 0.00 3.56
28 29 7.597743 GGCATTTATATCTTCTTGAAGGCATTG 59.402 37.037 10.08 2.45 0.00 2.82
29 30 7.115947 GCATTTATATCTTCTTGAAGGCATTGC 59.884 37.037 10.08 0.00 0.00 3.56
30 31 7.886629 TTTATATCTTCTTGAAGGCATTGCT 57.113 32.000 8.82 0.00 0.00 3.91
31 32 5.769484 ATATCTTCTTGAAGGCATTGCTG 57.231 39.130 8.82 0.00 0.00 4.41
40 41 2.796651 GCATTGCTGCCGGAGAAG 59.203 61.111 5.05 0.00 42.88 2.85
41 42 2.042831 GCATTGCTGCCGGAGAAGT 61.043 57.895 5.05 0.00 42.88 3.01
42 43 1.986575 GCATTGCTGCCGGAGAAGTC 61.987 60.000 5.05 0.00 42.88 3.01
43 44 1.448540 ATTGCTGCCGGAGAAGTCG 60.449 57.895 5.05 0.00 0.00 4.18
44 45 1.888436 ATTGCTGCCGGAGAAGTCGA 61.888 55.000 5.05 0.00 0.00 4.20
45 46 2.507324 GCTGCCGGAGAAGTCGAC 60.507 66.667 5.05 7.70 0.00 4.20
46 47 2.962569 CTGCCGGAGAAGTCGACA 59.037 61.111 19.50 0.00 0.00 4.35
47 48 1.513158 CTGCCGGAGAAGTCGACAT 59.487 57.895 19.50 5.41 0.00 3.06
48 49 0.738975 CTGCCGGAGAAGTCGACATA 59.261 55.000 19.50 0.00 0.00 2.29
49 50 0.738975 TGCCGGAGAAGTCGACATAG 59.261 55.000 19.50 2.59 0.00 2.23
50 51 0.595310 GCCGGAGAAGTCGACATAGC 60.595 60.000 19.50 6.65 0.00 2.97
51 52 0.030908 CCGGAGAAGTCGACATAGCC 59.969 60.000 19.50 12.35 0.00 3.93
52 53 0.030908 CGGAGAAGTCGACATAGCCC 59.969 60.000 19.50 10.68 0.00 5.19
53 54 1.404843 GGAGAAGTCGACATAGCCCT 58.595 55.000 19.50 4.81 0.00 5.19
54 55 2.584236 GGAGAAGTCGACATAGCCCTA 58.416 52.381 19.50 0.00 0.00 3.53
55 56 2.293955 GGAGAAGTCGACATAGCCCTAC 59.706 54.545 19.50 2.12 0.00 3.18
56 57 1.948145 AGAAGTCGACATAGCCCTACG 59.052 52.381 19.50 0.00 0.00 3.51
57 58 1.674962 GAAGTCGACATAGCCCTACGT 59.325 52.381 19.50 0.00 0.00 3.57
58 59 1.022735 AGTCGACATAGCCCTACGTG 58.977 55.000 19.50 0.00 0.00 4.49
59 60 0.737219 GTCGACATAGCCCTACGTGT 59.263 55.000 11.55 0.00 0.00 4.49
60 61 1.133790 GTCGACATAGCCCTACGTGTT 59.866 52.381 11.55 0.00 0.00 3.32
61 62 2.355756 GTCGACATAGCCCTACGTGTTA 59.644 50.000 11.55 0.00 0.00 2.41
62 63 3.016031 TCGACATAGCCCTACGTGTTAA 58.984 45.455 0.00 0.00 0.00 2.01
63 64 3.443329 TCGACATAGCCCTACGTGTTAAA 59.557 43.478 0.00 0.00 0.00 1.52
64 65 4.098349 TCGACATAGCCCTACGTGTTAAAT 59.902 41.667 0.00 0.00 0.00 1.40
65 66 4.807304 CGACATAGCCCTACGTGTTAAATT 59.193 41.667 0.00 0.00 0.00 1.82
66 67 5.051240 CGACATAGCCCTACGTGTTAAATTC 60.051 44.000 0.00 0.00 0.00 2.17
67 68 5.736813 ACATAGCCCTACGTGTTAAATTCA 58.263 37.500 0.00 0.00 0.00 2.57
68 69 6.354130 ACATAGCCCTACGTGTTAAATTCAT 58.646 36.000 0.00 0.00 0.00 2.57
69 70 7.502696 ACATAGCCCTACGTGTTAAATTCATA 58.497 34.615 0.00 0.00 0.00 2.15
70 71 8.154856 ACATAGCCCTACGTGTTAAATTCATAT 58.845 33.333 0.00 0.00 0.00 1.78
71 72 8.999431 CATAGCCCTACGTGTTAAATTCATATT 58.001 33.333 0.00 0.00 0.00 1.28
72 73 7.875327 AGCCCTACGTGTTAAATTCATATTT 57.125 32.000 0.00 0.00 37.68 1.40
73 74 8.288689 AGCCCTACGTGTTAAATTCATATTTT 57.711 30.769 0.00 0.00 35.61 1.82
74 75 8.188139 AGCCCTACGTGTTAAATTCATATTTTG 58.812 33.333 0.00 0.00 35.61 2.44
75 76 7.971722 GCCCTACGTGTTAAATTCATATTTTGT 59.028 33.333 0.00 0.00 35.61 2.83
96 97 1.374947 TGGCTCTACCACAGTTGCC 59.625 57.895 0.00 0.00 46.36 4.52
97 98 1.127567 TGGCTCTACCACAGTTGCCT 61.128 55.000 0.00 0.00 46.36 4.75
98 99 0.036875 GGCTCTACCACAGTTGCCTT 59.963 55.000 0.00 0.00 39.85 4.35
99 100 1.545651 GGCTCTACCACAGTTGCCTTT 60.546 52.381 0.00 0.00 39.85 3.11
100 101 1.807142 GCTCTACCACAGTTGCCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
101 102 2.427506 CTCTACCACAGTTGCCTTTCC 58.572 52.381 0.00 0.00 0.00 3.13
102 103 2.039084 CTCTACCACAGTTGCCTTTCCT 59.961 50.000 0.00 0.00 0.00 3.36
103 104 3.244582 TCTACCACAGTTGCCTTTCCTA 58.755 45.455 0.00 0.00 0.00 2.94
104 105 3.844211 TCTACCACAGTTGCCTTTCCTAT 59.156 43.478 0.00 0.00 0.00 2.57
105 106 2.795329 ACCACAGTTGCCTTTCCTATG 58.205 47.619 0.00 0.00 0.00 2.23
106 107 2.108250 ACCACAGTTGCCTTTCCTATGT 59.892 45.455 0.00 0.00 0.00 2.29
107 108 3.157087 CCACAGTTGCCTTTCCTATGTT 58.843 45.455 0.00 0.00 0.00 2.71
108 109 3.191371 CCACAGTTGCCTTTCCTATGTTC 59.809 47.826 0.00 0.00 0.00 3.18
109 110 4.074970 CACAGTTGCCTTTCCTATGTTCT 58.925 43.478 0.00 0.00 0.00 3.01
110 111 4.520492 CACAGTTGCCTTTCCTATGTTCTT 59.480 41.667 0.00 0.00 0.00 2.52
111 112 4.762251 ACAGTTGCCTTTCCTATGTTCTTC 59.238 41.667 0.00 0.00 0.00 2.87
112 113 4.761739 CAGTTGCCTTTCCTATGTTCTTCA 59.238 41.667 0.00 0.00 0.00 3.02
113 114 4.762251 AGTTGCCTTTCCTATGTTCTTCAC 59.238 41.667 0.00 0.00 0.00 3.18
114 115 4.640771 TGCCTTTCCTATGTTCTTCACT 57.359 40.909 0.00 0.00 0.00 3.41
115 116 4.985538 TGCCTTTCCTATGTTCTTCACTT 58.014 39.130 0.00 0.00 0.00 3.16
116 117 4.761739 TGCCTTTCCTATGTTCTTCACTTG 59.238 41.667 0.00 0.00 0.00 3.16
117 118 4.762251 GCCTTTCCTATGTTCTTCACTTGT 59.238 41.667 0.00 0.00 0.00 3.16
118 119 5.241728 GCCTTTCCTATGTTCTTCACTTGTT 59.758 40.000 0.00 0.00 0.00 2.83
119 120 6.672147 CCTTTCCTATGTTCTTCACTTGTTG 58.328 40.000 0.00 0.00 0.00 3.33
120 121 6.486657 CCTTTCCTATGTTCTTCACTTGTTGA 59.513 38.462 0.00 0.00 0.00 3.18
121 122 7.175641 CCTTTCCTATGTTCTTCACTTGTTGAT 59.824 37.037 0.00 0.00 32.84 2.57
122 123 7.439157 TTCCTATGTTCTTCACTTGTTGATG 57.561 36.000 0.00 0.00 32.84 3.07
123 124 6.768483 TCCTATGTTCTTCACTTGTTGATGA 58.232 36.000 0.00 0.00 36.78 2.92
124 125 6.650807 TCCTATGTTCTTCACTTGTTGATGAC 59.349 38.462 0.00 0.00 37.95 3.06
125 126 6.427853 CCTATGTTCTTCACTTGTTGATGACA 59.572 38.462 0.00 0.00 37.95 3.58
126 127 6.889301 ATGTTCTTCACTTGTTGATGACAT 57.111 33.333 0.00 0.00 37.95 3.06
127 128 6.698008 TGTTCTTCACTTGTTGATGACATT 57.302 33.333 0.00 0.00 37.95 2.71
128 129 6.497437 TGTTCTTCACTTGTTGATGACATTG 58.503 36.000 0.00 0.00 37.95 2.82
129 130 5.694231 TCTTCACTTGTTGATGACATTGG 57.306 39.130 0.00 0.00 38.26 3.16
130 131 3.921119 TCACTTGTTGATGACATTGGC 57.079 42.857 0.00 0.00 38.26 4.52
131 132 3.220940 TCACTTGTTGATGACATTGGCA 58.779 40.909 0.00 0.00 38.26 4.92
132 133 3.827876 TCACTTGTTGATGACATTGGCAT 59.172 39.130 4.19 4.19 38.26 4.40
133 134 4.281435 TCACTTGTTGATGACATTGGCATT 59.719 37.500 6.42 0.00 38.26 3.56
134 135 4.992319 CACTTGTTGATGACATTGGCATTT 59.008 37.500 6.42 0.00 38.26 2.32
135 136 5.467399 CACTTGTTGATGACATTGGCATTTT 59.533 36.000 6.42 0.00 38.26 1.82
136 137 6.017770 CACTTGTTGATGACATTGGCATTTTT 60.018 34.615 6.42 0.00 38.26 1.94
137 138 5.926214 TGTTGATGACATTGGCATTTTTG 57.074 34.783 6.42 0.00 32.00 2.44
138 139 4.213694 TGTTGATGACATTGGCATTTTTGC 59.786 37.500 6.42 0.00 32.00 3.68
139 140 4.004196 TGATGACATTGGCATTTTTGCA 57.996 36.364 6.42 0.00 36.33 4.08
140 141 4.580868 TGATGACATTGGCATTTTTGCAT 58.419 34.783 6.42 0.00 36.33 3.96
141 142 5.004448 TGATGACATTGGCATTTTTGCATT 58.996 33.333 6.42 0.00 36.33 3.56
142 143 4.750952 TGACATTGGCATTTTTGCATTG 57.249 36.364 0.00 0.00 36.33 2.82
143 144 3.058155 TGACATTGGCATTTTTGCATTGC 60.058 39.130 0.46 0.46 36.33 3.56
144 145 2.885266 ACATTGGCATTTTTGCATTGCA 59.115 36.364 7.38 7.38 38.12 4.08
145 146 3.508012 ACATTGGCATTTTTGCATTGCAT 59.492 34.783 12.95 0.00 38.76 3.96
146 147 4.700692 ACATTGGCATTTTTGCATTGCATA 59.299 33.333 12.95 4.75 38.76 3.14
147 148 5.183331 ACATTGGCATTTTTGCATTGCATAA 59.817 32.000 12.95 11.29 38.76 1.90
148 149 5.700722 TTGGCATTTTTGCATTGCATAAA 57.299 30.435 23.31 23.31 41.77 1.40
149 150 5.044428 TGGCATTTTTGCATTGCATAAAC 57.956 34.783 23.48 14.62 40.79 2.01
150 151 4.517832 TGGCATTTTTGCATTGCATAAACA 59.482 33.333 23.48 16.42 40.79 2.83
151 152 5.009310 TGGCATTTTTGCATTGCATAAACAA 59.991 32.000 23.48 8.65 40.79 2.83
152 153 6.094061 GGCATTTTTGCATTGCATAAACAAT 58.906 32.000 23.48 10.21 40.79 2.71
153 154 7.094506 TGGCATTTTTGCATTGCATAAACAATA 60.095 29.630 23.48 11.90 40.79 1.90
154 155 7.754027 GGCATTTTTGCATTGCATAAACAATAA 59.246 29.630 23.48 6.70 40.79 1.40
155 156 9.291664 GCATTTTTGCATTGCATAAACAATAAT 57.708 25.926 23.48 9.04 40.79 1.28
181 182 7.692460 AAAACAGACTCTATGCATCAATTGA 57.308 32.000 11.26 11.26 0.00 2.57
182 183 7.876936 AAACAGACTCTATGCATCAATTGAT 57.123 32.000 15.36 15.36 34.56 2.57
190 191 3.859650 CATCAATTGATGCGGAGGC 57.140 52.632 30.11 0.00 44.44 4.70
191 192 0.313043 CATCAATTGATGCGGAGGCC 59.687 55.000 30.11 0.00 44.44 5.19
192 193 0.106569 ATCAATTGATGCGGAGGCCA 60.107 50.000 20.11 0.00 38.85 5.36
193 194 0.749091 TCAATTGATGCGGAGGCCAG 60.749 55.000 5.01 0.00 38.85 4.85
194 195 1.033746 CAATTGATGCGGAGGCCAGT 61.034 55.000 5.01 0.00 38.85 4.00
195 196 1.033746 AATTGATGCGGAGGCCAGTG 61.034 55.000 5.01 0.00 38.85 3.66
196 197 2.898920 ATTGATGCGGAGGCCAGTGG 62.899 60.000 5.01 4.20 38.85 4.00
197 198 4.101448 GATGCGGAGGCCAGTGGT 62.101 66.667 11.74 0.00 38.85 4.16
198 199 3.628646 GATGCGGAGGCCAGTGGTT 62.629 63.158 11.74 0.00 38.85 3.67
199 200 3.628646 ATGCGGAGGCCAGTGGTTC 62.629 63.158 11.74 9.04 38.85 3.62
201 202 3.636231 CGGAGGCCAGTGGTTCCA 61.636 66.667 25.32 0.00 31.29 3.53
202 203 2.843545 GGAGGCCAGTGGTTCCAA 59.156 61.111 22.70 0.00 31.86 3.53
203 204 1.603739 GGAGGCCAGTGGTTCCAAC 60.604 63.158 22.70 10.60 31.86 3.77
218 219 6.964807 GGTTCCAACCTCCTTTACTAAAAA 57.035 37.500 0.83 0.00 45.75 1.94
247 248 4.483476 GGTTATACCTAAGCGCCAATTG 57.517 45.455 2.29 0.00 34.73 2.32
248 249 3.881089 GGTTATACCTAAGCGCCAATTGT 59.119 43.478 2.29 0.00 34.73 2.71
249 250 4.261031 GGTTATACCTAAGCGCCAATTGTG 60.261 45.833 2.29 0.00 34.73 3.33
250 251 2.483014 TACCTAAGCGCCAATTGTGT 57.517 45.000 2.29 0.00 0.00 3.72
251 252 0.881118 ACCTAAGCGCCAATTGTGTG 59.119 50.000 2.29 4.09 0.00 3.82
252 253 0.456653 CCTAAGCGCCAATTGTGTGC 60.457 55.000 18.86 18.86 0.00 4.57
253 254 0.523072 CTAAGCGCCAATTGTGTGCT 59.477 50.000 21.76 21.76 36.44 4.40
254 255 0.958091 TAAGCGCCAATTGTGTGCTT 59.042 45.000 31.64 31.64 43.23 3.91
255 256 0.958091 AAGCGCCAATTGTGTGCTTA 59.042 45.000 29.89 0.00 40.67 3.09
256 257 0.240945 AGCGCCAATTGTGTGCTTAC 59.759 50.000 21.76 5.73 32.34 2.34
257 258 0.039617 GCGCCAATTGTGTGCTTACA 60.040 50.000 19.09 0.00 0.00 2.41
258 259 1.601663 GCGCCAATTGTGTGCTTACAA 60.602 47.619 19.09 8.42 43.93 2.41
259 260 2.318578 CGCCAATTGTGTGCTTACAAG 58.681 47.619 4.43 1.49 43.14 3.16
260 261 2.676076 GCCAATTGTGTGCTTACAAGG 58.324 47.619 4.43 9.01 43.14 3.61
261 262 2.035832 GCCAATTGTGTGCTTACAAGGT 59.964 45.455 4.43 1.38 43.14 3.50
262 263 3.641648 CCAATTGTGTGCTTACAAGGTG 58.358 45.455 4.43 10.71 43.14 4.00
263 264 3.068024 CCAATTGTGTGCTTACAAGGTGT 59.932 43.478 4.43 0.00 43.14 4.16
264 265 3.988379 ATTGTGTGCTTACAAGGTGTG 57.012 42.857 11.05 0.00 43.14 3.82
265 266 1.674359 TGTGTGCTTACAAGGTGTGG 58.326 50.000 0.00 0.00 0.00 4.17
266 267 1.210722 TGTGTGCTTACAAGGTGTGGA 59.789 47.619 0.00 0.00 0.00 4.02
267 268 2.158682 TGTGTGCTTACAAGGTGTGGAT 60.159 45.455 0.00 0.00 0.00 3.41
268 269 2.884639 GTGTGCTTACAAGGTGTGGATT 59.115 45.455 0.00 0.00 0.00 3.01
269 270 3.317993 GTGTGCTTACAAGGTGTGGATTT 59.682 43.478 0.00 0.00 0.00 2.17
270 271 3.317711 TGTGCTTACAAGGTGTGGATTTG 59.682 43.478 0.00 0.00 0.00 2.32
271 272 2.890311 TGCTTACAAGGTGTGGATTTGG 59.110 45.455 0.00 0.00 0.00 3.28
272 273 2.890945 GCTTACAAGGTGTGGATTTGGT 59.109 45.455 0.00 0.00 0.00 3.67
273 274 4.076394 GCTTACAAGGTGTGGATTTGGTA 58.924 43.478 0.00 0.00 0.00 3.25
274 275 4.082949 GCTTACAAGGTGTGGATTTGGTAC 60.083 45.833 0.00 0.00 0.00 3.34
275 276 3.586470 ACAAGGTGTGGATTTGGTACA 57.414 42.857 0.00 0.00 0.00 2.90
295 296 9.456147 TGGTACAAATATAGTTTGCATGTTACT 57.544 29.630 0.00 0.00 31.92 2.24
298 299 8.687824 ACAAATATAGTTTGCATGTTACTTGC 57.312 30.769 15.04 15.04 40.55 4.01
299 300 8.522830 ACAAATATAGTTTGCATGTTACTTGCT 58.477 29.630 20.88 6.41 40.77 3.91
362 363 8.654230 TCTCATGAGTATTTGCTAACTTCATC 57.346 34.615 21.92 0.00 0.00 2.92
364 365 7.337938 TCATGAGTATTTGCTAACTTCATCCA 58.662 34.615 0.00 0.00 0.00 3.41
371 372 6.772360 TTTGCTAACTTCATCCATAATGCA 57.228 33.333 0.00 0.00 35.17 3.96
389 390 3.265791 TGCACAACATTTTGGTTTGACC 58.734 40.909 0.00 0.00 37.00 4.02
401 402 3.556999 TGGTTTGACCGAGATTTTTGGA 58.443 40.909 0.00 0.00 42.58 3.53
445 446 5.806654 AACAGGCCAAACAAGTTATGAAT 57.193 34.783 5.01 0.00 0.00 2.57
512 521 6.474140 ACATATGGTTATTGTGGTAGTCGA 57.526 37.500 7.80 0.00 0.00 4.20
513 522 6.880484 ACATATGGTTATTGTGGTAGTCGAA 58.120 36.000 7.80 0.00 0.00 3.71
514 523 6.984474 ACATATGGTTATTGTGGTAGTCGAAG 59.016 38.462 7.80 0.00 0.00 3.79
532 541 6.922407 AGTCGAAGAAACTACAACTAGGTTTC 59.078 38.462 11.45 11.45 45.04 2.78
568 580 6.678547 ACTTTAACTTCCATGGCCCATAATA 58.321 36.000 6.96 0.00 0.00 0.98
580 592 3.243068 GGCCCATAATAACAAAGTCAGCG 60.243 47.826 0.00 0.00 0.00 5.18
581 593 3.625764 GCCCATAATAACAAAGTCAGCGA 59.374 43.478 0.00 0.00 0.00 4.93
597 609 2.032799 CAGCGAACACTAGAGAGCTAGG 59.967 54.545 0.00 0.00 46.80 3.02
598 610 2.092861 AGCGAACACTAGAGAGCTAGGA 60.093 50.000 0.00 0.00 46.80 2.94
599 611 2.289547 GCGAACACTAGAGAGCTAGGAG 59.710 54.545 0.00 0.00 46.80 3.69
600 612 3.799366 CGAACACTAGAGAGCTAGGAGA 58.201 50.000 0.00 0.00 46.80 3.71
601 613 3.807622 CGAACACTAGAGAGCTAGGAGAG 59.192 52.174 0.00 0.00 46.80 3.20
602 614 3.857157 ACACTAGAGAGCTAGGAGAGG 57.143 52.381 0.00 0.00 46.80 3.69
630 642 7.418597 GGGTGGGGGTGATTTAATATTTCTTTC 60.419 40.741 0.00 0.00 0.00 2.62
635 647 8.414003 GGGGTGATTTAATATTTCTTTCTCCAC 58.586 37.037 0.00 0.00 0.00 4.02
655 669 4.095610 CACTTGACGTGGAAGTTTTGTTC 58.904 43.478 6.80 0.00 40.02 3.18
661 675 2.680841 CGTGGAAGTTTTGTTCTGACCA 59.319 45.455 0.00 0.00 0.00 4.02
682 696 2.618053 AGCCGTGTGTAGCTATCAAAC 58.382 47.619 0.00 1.85 37.64 2.93
715 729 7.068103 ACACAATTAATCACCTTGAACAAGTCA 59.932 33.333 12.54 0.00 36.72 3.41
745 759 7.611213 ACAAACTAGTTGGCTGTCATATAAC 57.389 36.000 9.34 0.00 41.97 1.89
759 773 4.823989 GTCATATAACTGCCTCCAAATGCT 59.176 41.667 0.00 0.00 0.00 3.79
788 805 5.382303 CAAAGCCAAACTCACATAGTAACG 58.618 41.667 0.00 0.00 37.50 3.18
823 840 7.872993 AGAACAACAATAGAGTGAAGAATCGAA 59.127 33.333 0.00 0.00 0.00 3.71
908 925 0.250553 TGGGTAAGCCAAAGTCACGG 60.251 55.000 0.00 0.00 36.17 4.94
1065 1117 0.673644 ATGGTTATATCGGCAGCGCC 60.674 55.000 2.29 9.20 46.75 6.53
1307 1359 7.598118 TCCGTTCGATTTGTTGTAGTATAACAA 59.402 33.333 18.12 18.12 43.88 2.83
1355 1407 7.390013 AGTTTTCCCTAAGTTTCTCCTAAGT 57.610 36.000 0.00 0.00 0.00 2.24
1421 1473 5.801350 TGGATTTTCTGTCATAAAGCTCG 57.199 39.130 0.00 0.00 0.00 5.03
1534 1586 9.528489 AAAAGGGAGTCATATTAAGCTAACAAA 57.472 29.630 0.00 0.00 0.00 2.83
1710 1762 0.249398 GTGCTAGATCCAACGGGTGT 59.751 55.000 0.00 0.00 34.93 4.16
1926 1981 8.032952 TCACATTTTCATCTATTCAGTGTCAC 57.967 34.615 0.00 0.00 0.00 3.67
1940 1995 6.507958 TCAGTGTCACAATTTCAGTTTGAA 57.492 33.333 5.62 0.00 34.03 2.69
1988 2044 6.238897 CGTATGTTGTAATGGGGCACAAATAT 60.239 38.462 0.00 0.00 36.47 1.28
1989 2045 7.041030 CGTATGTTGTAATGGGGCACAAATATA 60.041 37.037 0.00 0.00 36.47 0.86
1990 2046 7.854166 ATGTTGTAATGGGGCACAAATATAT 57.146 32.000 0.00 0.00 36.47 0.86
2001 2057 7.177568 TGGGGCACAAATATATTATACGCAATT 59.822 33.333 0.00 0.00 0.00 2.32
2073 2129 4.103153 AGACTTCAACTCCCAACTGAATCA 59.897 41.667 0.00 0.00 0.00 2.57
2075 2131 2.783135 TCAACTCCCAACTGAATCAGC 58.217 47.619 10.62 0.00 34.37 4.26
2076 2132 2.106338 TCAACTCCCAACTGAATCAGCA 59.894 45.455 10.62 0.00 34.37 4.41
2077 2133 2.191128 ACTCCCAACTGAATCAGCAC 57.809 50.000 10.62 0.00 34.37 4.40
2078 2134 1.701847 ACTCCCAACTGAATCAGCACT 59.298 47.619 10.62 0.00 34.37 4.40
2079 2135 2.107204 ACTCCCAACTGAATCAGCACTT 59.893 45.455 10.62 0.00 34.37 3.16
2135 2191 2.755103 CCAATAAGACTTGGGGCTGTTC 59.245 50.000 0.00 0.00 41.71 3.18
2182 2238 4.074466 GAACGGGTTGTTGCAATACTAC 57.926 45.455 0.59 0.00 42.09 2.73
2183 2239 2.429478 ACGGGTTGTTGCAATACTACC 58.571 47.619 12.16 12.16 41.37 3.18
2184 2240 2.039348 ACGGGTTGTTGCAATACTACCT 59.961 45.455 17.79 1.44 41.67 3.08
2187 2243 4.879545 CGGGTTGTTGCAATACTACCTTAT 59.120 41.667 17.79 0.00 41.67 1.73
2188 2244 6.050432 CGGGTTGTTGCAATACTACCTTATA 58.950 40.000 17.79 0.00 41.67 0.98
2189 2245 6.708949 CGGGTTGTTGCAATACTACCTTATAT 59.291 38.462 17.79 0.00 41.67 0.86
2190 2246 7.874016 CGGGTTGTTGCAATACTACCTTATATA 59.126 37.037 17.79 0.00 41.67 0.86
2191 2247 9.734984 GGGTTGTTGCAATACTACCTTATATAT 57.265 33.333 17.79 0.00 41.67 0.86
2231 2308 0.893727 ATCAAAACGGGCAGTGGGAC 60.894 55.000 0.00 0.00 0.00 4.46
2246 4217 2.093128 GTGGGACGGGATGATGTAAGTT 60.093 50.000 0.00 0.00 0.00 2.66
2253 4226 1.692411 GATGATGTAAGTTGGGGGCC 58.308 55.000 0.00 0.00 0.00 5.80
2274 4247 3.182572 CCGAGCAATAACGAATCTACTGC 59.817 47.826 0.00 0.00 0.00 4.40
2281 4254 0.448990 ACGAATCTACTGCGCGTACA 59.551 50.000 8.43 0.00 32.94 2.90
2365 4358 0.038251 GCATGGACGGCTCGATATGA 60.038 55.000 0.00 0.00 0.00 2.15
2399 4392 2.324477 GCATGGCATCGTACGCAC 59.676 61.111 11.24 1.70 0.00 5.34
2496 7187 4.641094 TCTCTCTCTACCTCGAATTCAACC 59.359 45.833 6.22 0.00 0.00 3.77
2497 7188 3.377485 TCTCTCTACCTCGAATTCAACCG 59.623 47.826 6.22 0.00 0.00 4.44
2498 7189 2.426024 TCTCTACCTCGAATTCAACCGG 59.574 50.000 0.00 0.00 0.00 5.28
2500 7191 2.094390 TCTACCTCGAATTCAACCGGTG 60.094 50.000 8.52 2.16 0.00 4.94
2504 7195 1.209127 CGAATTCAACCGGTGTGGC 59.791 57.895 8.52 0.00 43.94 5.01
2506 7197 0.893727 GAATTCAACCGGTGTGGCCT 60.894 55.000 8.52 0.00 43.94 5.19
2516 7207 0.257039 GGTGTGGCCTCTTCATCCAT 59.743 55.000 3.32 0.00 31.83 3.41
2526 7217 5.221925 GGCCTCTTCATCCATCTATTACCAA 60.222 44.000 0.00 0.00 0.00 3.67
2539 7230 8.551440 CCATCTATTACCAATCATAATCCTCCA 58.449 37.037 0.00 0.00 0.00 3.86
2560 7251 8.186821 CCTCCACATCAGCTTATTTCTAAAAAG 58.813 37.037 0.00 0.00 0.00 2.27
2593 7284 8.367943 TCTTTTTGTAAACGTAGCATTACTCA 57.632 30.769 8.80 0.00 35.18 3.41
2626 7317 1.856265 GAGCAAAACACCCCAGAGCG 61.856 60.000 0.00 0.00 0.00 5.03
2644 7335 1.871676 GCGAAAGAGGGAACGTTCTTT 59.128 47.619 26.32 18.73 42.63 2.52
2664 7355 3.308438 TCTTTTTACTCCCTCCGTTCG 57.692 47.619 0.00 0.00 0.00 3.95
2665 7356 2.028748 TCTTTTTACTCCCTCCGTTCGG 60.029 50.000 4.74 4.74 0.00 4.30
2666 7357 1.631405 TTTTACTCCCTCCGTTCGGA 58.369 50.000 13.34 13.34 0.00 4.55
2667 7358 1.631405 TTTACTCCCTCCGTTCGGAA 58.369 50.000 14.79 0.04 33.41 4.30
2668 7359 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
2669 7360 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2670 7361 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2671 7362 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2672 7363 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2673 7364 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2674 7365 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2675 7366 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2676 7367 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2677 7368 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2678 7369 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2679 7370 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2680 7371 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
2681 7372 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
2682 7373 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
2683 7374 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
2684 7375 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
2685 7376 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
2686 7377 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
2687 7378 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
2688 7379 6.543736 GGAATTACTTGTCTCGAAAATGGAC 58.456 40.000 0.00 0.00 0.00 4.02
2689 7380 5.779806 ATTACTTGTCTCGAAAATGGACG 57.220 39.130 0.00 0.00 33.21 4.79
2690 7381 3.107642 ACTTGTCTCGAAAATGGACGT 57.892 42.857 0.00 0.00 33.21 4.34
2691 7382 4.247267 ACTTGTCTCGAAAATGGACGTA 57.753 40.909 0.00 0.00 33.21 3.57
2692 7383 4.817517 ACTTGTCTCGAAAATGGACGTAT 58.182 39.130 0.00 0.00 33.21 3.06
2693 7384 4.863131 ACTTGTCTCGAAAATGGACGTATC 59.137 41.667 0.00 0.00 33.21 2.24
2694 7385 4.713824 TGTCTCGAAAATGGACGTATCT 57.286 40.909 0.00 0.00 33.21 1.98
2695 7386 5.823209 TGTCTCGAAAATGGACGTATCTA 57.177 39.130 0.00 0.00 33.21 1.98
2696 7387 5.817988 TGTCTCGAAAATGGACGTATCTAG 58.182 41.667 0.00 0.00 33.21 2.43
2697 7388 5.587443 TGTCTCGAAAATGGACGTATCTAGA 59.413 40.000 0.00 0.00 33.21 2.43
2698 7389 6.094464 TGTCTCGAAAATGGACGTATCTAGAA 59.906 38.462 0.00 0.00 33.21 2.10
2699 7390 6.414402 GTCTCGAAAATGGACGTATCTAGAAC 59.586 42.308 0.00 0.00 0.00 3.01
2700 7391 6.318144 TCTCGAAAATGGACGTATCTAGAACT 59.682 38.462 0.00 0.00 0.00 3.01
2701 7392 7.496920 TCTCGAAAATGGACGTATCTAGAACTA 59.503 37.037 0.00 0.00 0.00 2.24
2702 7393 7.988737 TCGAAAATGGACGTATCTAGAACTAA 58.011 34.615 0.00 0.00 0.00 2.24
2703 7394 8.461222 TCGAAAATGGACGTATCTAGAACTAAA 58.539 33.333 0.00 0.00 0.00 1.85
2704 7395 9.079833 CGAAAATGGACGTATCTAGAACTAAAA 57.920 33.333 0.00 0.00 0.00 1.52
2708 7399 9.674824 AATGGACGTATCTAGAACTAAAATACG 57.325 33.333 21.30 21.30 46.40 3.06
2729 7420 9.832445 AATACGTTTAGATACATCCATTTCTGT 57.168 29.630 0.00 0.00 0.00 3.41
2730 7421 7.539712 ACGTTTAGATACATCCATTTCTGTG 57.460 36.000 0.00 0.00 0.00 3.66
2731 7422 7.327975 ACGTTTAGATACATCCATTTCTGTGA 58.672 34.615 0.00 0.00 0.00 3.58
2732 7423 7.277981 ACGTTTAGATACATCCATTTCTGTGAC 59.722 37.037 0.00 0.00 0.00 3.67
2733 7424 7.277760 CGTTTAGATACATCCATTTCTGTGACA 59.722 37.037 0.00 0.00 0.00 3.58
2734 7425 8.946085 GTTTAGATACATCCATTTCTGTGACAA 58.054 33.333 0.00 0.00 0.00 3.18
2735 7426 8.722480 TTAGATACATCCATTTCTGTGACAAG 57.278 34.615 0.00 0.00 0.00 3.16
2736 7427 6.715280 AGATACATCCATTTCTGTGACAAGT 58.285 36.000 0.00 0.00 0.00 3.16
2737 7428 7.851228 AGATACATCCATTTCTGTGACAAGTA 58.149 34.615 0.00 0.00 0.00 2.24
2738 7429 8.321353 AGATACATCCATTTCTGTGACAAGTAA 58.679 33.333 0.00 0.00 0.00 2.24
2739 7430 9.113838 GATACATCCATTTCTGTGACAAGTAAT 57.886 33.333 0.00 0.00 0.00 1.89
2740 7431 7.765695 ACATCCATTTCTGTGACAAGTAATT 57.234 32.000 0.00 0.00 0.00 1.40
2741 7432 7.820648 ACATCCATTTCTGTGACAAGTAATTC 58.179 34.615 0.00 0.00 0.00 2.17
2742 7433 6.817765 TCCATTTCTGTGACAAGTAATTCC 57.182 37.500 0.00 0.00 0.00 3.01
2743 7434 5.411361 TCCATTTCTGTGACAAGTAATTCCG 59.589 40.000 0.00 0.00 0.00 4.30
2744 7435 5.411361 CCATTTCTGTGACAAGTAATTCCGA 59.589 40.000 0.00 0.00 0.00 4.55
2745 7436 6.072728 CCATTTCTGTGACAAGTAATTCCGAA 60.073 38.462 0.00 0.00 0.00 4.30
2746 7437 5.917541 TTCTGTGACAAGTAATTCCGAAC 57.082 39.130 0.00 0.00 0.00 3.95
2747 7438 3.985279 TCTGTGACAAGTAATTCCGAACG 59.015 43.478 0.00 0.00 0.00 3.95
2748 7439 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
2749 7440 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
2750 7441 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
2751 7442 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2752 7443 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2753 7444 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2754 7445 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2755 7446 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2756 7447 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2757 7448 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2758 7449 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
2759 7450 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.000 12.04 0.00 39.76 2.24
2760 7451 0.172803 CCGAACGGAGGGAGTACTTG 59.827 60.000 7.53 0.00 37.50 3.16
2761 7452 0.172803 CGAACGGAGGGAGTACTTGG 59.827 60.000 0.00 0.00 0.00 3.61
2762 7453 0.535797 GAACGGAGGGAGTACTTGGG 59.464 60.000 0.00 0.00 0.00 4.12
2763 7454 0.115745 AACGGAGGGAGTACTTGGGA 59.884 55.000 0.00 0.00 0.00 4.37
2764 7455 0.338814 ACGGAGGGAGTACTTGGGAT 59.661 55.000 0.00 0.00 0.00 3.85
2765 7456 0.753262 CGGAGGGAGTACTTGGGATG 59.247 60.000 0.00 0.00 0.00 3.51
2766 7457 1.688311 CGGAGGGAGTACTTGGGATGA 60.688 57.143 0.00 0.00 0.00 2.92
2767 7458 1.763545 GGAGGGAGTACTTGGGATGAC 59.236 57.143 0.00 0.00 0.00 3.06
2768 7459 2.467880 GAGGGAGTACTTGGGATGACA 58.532 52.381 0.00 0.00 0.00 3.58
2769 7460 2.168728 GAGGGAGTACTTGGGATGACAC 59.831 54.545 0.00 0.00 0.00 3.67
2770 7461 1.134788 GGGAGTACTTGGGATGACACG 60.135 57.143 0.00 0.00 0.00 4.49
2771 7462 1.641577 GAGTACTTGGGATGACACGC 58.358 55.000 0.00 0.00 0.00 5.34
2772 7463 0.108804 AGTACTTGGGATGACACGCG 60.109 55.000 3.53 3.53 0.00 6.01
2773 7464 0.108992 GTACTTGGGATGACACGCGA 60.109 55.000 15.93 0.00 0.00 5.87
2774 7465 0.604073 TACTTGGGATGACACGCGAA 59.396 50.000 15.93 0.00 0.00 4.70
2775 7466 0.949105 ACTTGGGATGACACGCGAAC 60.949 55.000 15.93 3.83 0.00 3.95
2776 7467 0.948623 CTTGGGATGACACGCGAACA 60.949 55.000 15.93 10.24 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.772169 GCCTTCAAGAAGATATAAATGCCCT 59.228 40.000 11.25 0.00 40.79 5.19
1 2 5.536161 TGCCTTCAAGAAGATATAAATGCCC 59.464 40.000 11.25 0.00 40.79 5.36
2 3 6.639632 TGCCTTCAAGAAGATATAAATGCC 57.360 37.500 11.25 0.00 40.79 4.40
3 4 7.115947 GCAATGCCTTCAAGAAGATATAAATGC 59.884 37.037 11.25 8.21 40.79 3.56
4 5 8.358148 AGCAATGCCTTCAAGAAGATATAAATG 58.642 33.333 11.25 3.01 40.79 2.32
5 6 8.358148 CAGCAATGCCTTCAAGAAGATATAAAT 58.642 33.333 11.25 0.00 40.79 1.40
6 7 7.682741 GCAGCAATGCCTTCAAGAAGATATAAA 60.683 37.037 11.25 0.00 40.79 1.40
7 8 6.238842 GCAGCAATGCCTTCAAGAAGATATAA 60.239 38.462 11.25 0.00 40.79 0.98
8 9 5.240183 GCAGCAATGCCTTCAAGAAGATATA 59.760 40.000 11.25 0.00 40.79 0.86
9 10 4.037684 GCAGCAATGCCTTCAAGAAGATAT 59.962 41.667 11.25 2.83 40.79 1.63
10 11 3.379372 GCAGCAATGCCTTCAAGAAGATA 59.621 43.478 11.25 0.62 40.79 1.98
11 12 2.165845 GCAGCAATGCCTTCAAGAAGAT 59.834 45.455 11.25 0.00 40.79 2.40
12 13 1.542915 GCAGCAATGCCTTCAAGAAGA 59.457 47.619 11.25 0.00 40.79 2.87
13 14 1.992170 GCAGCAATGCCTTCAAGAAG 58.008 50.000 0.00 2.83 38.14 2.85
23 24 1.986575 GACTTCTCCGGCAGCAATGC 61.987 60.000 0.00 0.00 0.00 3.56
24 25 1.699656 CGACTTCTCCGGCAGCAATG 61.700 60.000 0.00 0.00 0.00 2.82
25 26 1.448540 CGACTTCTCCGGCAGCAAT 60.449 57.895 0.00 0.00 0.00 3.56
26 27 2.048222 CGACTTCTCCGGCAGCAA 60.048 61.111 0.00 0.00 0.00 3.91
27 28 2.989253 TCGACTTCTCCGGCAGCA 60.989 61.111 0.00 0.00 0.00 4.41
28 29 2.507324 GTCGACTTCTCCGGCAGC 60.507 66.667 8.70 0.00 0.00 5.25
29 30 0.738975 TATGTCGACTTCTCCGGCAG 59.261 55.000 17.92 0.00 45.06 4.85
30 31 0.738975 CTATGTCGACTTCTCCGGCA 59.261 55.000 17.92 0.00 45.93 5.69
31 32 0.595310 GCTATGTCGACTTCTCCGGC 60.595 60.000 17.92 7.64 0.00 6.13
32 33 0.030908 GGCTATGTCGACTTCTCCGG 59.969 60.000 17.92 0.00 0.00 5.14
33 34 0.030908 GGGCTATGTCGACTTCTCCG 59.969 60.000 17.92 1.93 0.00 4.63
34 35 1.404843 AGGGCTATGTCGACTTCTCC 58.595 55.000 17.92 13.85 0.00 3.71
35 36 2.031857 CGTAGGGCTATGTCGACTTCTC 60.032 54.545 17.92 5.80 0.00 2.87
36 37 1.948145 CGTAGGGCTATGTCGACTTCT 59.052 52.381 17.92 6.38 0.00 2.85
37 38 1.674962 ACGTAGGGCTATGTCGACTTC 59.325 52.381 17.92 2.94 29.89 3.01
38 39 1.404391 CACGTAGGGCTATGTCGACTT 59.596 52.381 17.92 13.30 33.33 3.01
39 40 1.022735 CACGTAGGGCTATGTCGACT 58.977 55.000 17.92 4.95 33.33 4.18
40 41 0.737219 ACACGTAGGGCTATGTCGAC 59.263 55.000 9.11 9.11 33.33 4.20
41 42 1.466856 AACACGTAGGGCTATGTCGA 58.533 50.000 0.00 0.00 33.33 4.20
42 43 3.425577 TTAACACGTAGGGCTATGTCG 57.574 47.619 0.00 0.00 33.33 4.35
43 44 5.813672 TGAATTTAACACGTAGGGCTATGTC 59.186 40.000 0.00 0.00 33.33 3.06
44 45 5.736813 TGAATTTAACACGTAGGGCTATGT 58.263 37.500 0.00 0.00 35.81 2.29
45 46 6.861065 ATGAATTTAACACGTAGGGCTATG 57.139 37.500 0.00 0.00 0.00 2.23
46 47 9.569122 AAATATGAATTTAACACGTAGGGCTAT 57.431 29.630 0.00 0.00 33.45 2.97
47 48 8.967664 AAATATGAATTTAACACGTAGGGCTA 57.032 30.769 0.00 0.00 33.45 3.93
48 49 7.875327 AAATATGAATTTAACACGTAGGGCT 57.125 32.000 0.00 0.00 33.45 5.19
49 50 7.971722 ACAAAATATGAATTTAACACGTAGGGC 59.028 33.333 0.00 0.00 34.12 5.19
62 63 9.420118 TGGTAGAGCCATTACAAAATATGAATT 57.580 29.630 0.00 0.00 43.61 2.17
63 64 8.995027 TGGTAGAGCCATTACAAAATATGAAT 57.005 30.769 0.00 0.00 43.61 2.57
78 79 1.374947 GGCAACTGTGGTAGAGCCA 59.625 57.895 0.00 0.00 44.68 4.75
79 80 4.303257 GGCAACTGTGGTAGAGCC 57.697 61.111 0.00 0.00 41.34 4.70
91 92 4.762251 AGTGAAGAACATAGGAAAGGCAAC 59.238 41.667 0.00 0.00 0.00 4.17
92 93 4.985538 AGTGAAGAACATAGGAAAGGCAA 58.014 39.130 0.00 0.00 0.00 4.52
93 94 4.640771 AGTGAAGAACATAGGAAAGGCA 57.359 40.909 0.00 0.00 0.00 4.75
94 95 4.762251 ACAAGTGAAGAACATAGGAAAGGC 59.238 41.667 0.00 0.00 0.00 4.35
95 96 6.486657 TCAACAAGTGAAGAACATAGGAAAGG 59.513 38.462 0.00 0.00 31.51 3.11
96 97 7.496529 TCAACAAGTGAAGAACATAGGAAAG 57.503 36.000 0.00 0.00 31.51 2.62
97 98 7.719193 TCATCAACAAGTGAAGAACATAGGAAA 59.281 33.333 0.00 0.00 40.50 3.13
98 99 7.173218 GTCATCAACAAGTGAAGAACATAGGAA 59.827 37.037 0.00 0.00 40.50 3.36
99 100 6.650807 GTCATCAACAAGTGAAGAACATAGGA 59.349 38.462 0.00 0.00 40.50 2.94
100 101 6.427853 TGTCATCAACAAGTGAAGAACATAGG 59.572 38.462 0.00 0.00 40.50 2.57
101 102 7.425577 TGTCATCAACAAGTGAAGAACATAG 57.574 36.000 0.00 0.00 40.50 2.23
102 103 7.984422 ATGTCATCAACAAGTGAAGAACATA 57.016 32.000 0.00 0.00 42.37 2.29
103 104 6.889301 ATGTCATCAACAAGTGAAGAACAT 57.111 33.333 0.00 0.00 42.37 2.71
104 105 6.459985 CCAATGTCATCAACAAGTGAAGAACA 60.460 38.462 0.00 0.00 42.37 3.18
105 106 5.916883 CCAATGTCATCAACAAGTGAAGAAC 59.083 40.000 0.00 0.00 42.37 3.01
106 107 5.507817 GCCAATGTCATCAACAAGTGAAGAA 60.508 40.000 0.00 0.00 42.37 2.52
107 108 4.022935 GCCAATGTCATCAACAAGTGAAGA 60.023 41.667 0.00 0.00 42.37 2.87
108 109 4.232221 GCCAATGTCATCAACAAGTGAAG 58.768 43.478 0.00 0.00 42.37 3.02
109 110 3.635836 TGCCAATGTCATCAACAAGTGAA 59.364 39.130 0.00 0.00 42.37 3.18
110 111 3.220940 TGCCAATGTCATCAACAAGTGA 58.779 40.909 0.00 0.00 42.37 3.41
111 112 3.646611 TGCCAATGTCATCAACAAGTG 57.353 42.857 0.00 0.00 42.37 3.16
112 113 4.877378 AATGCCAATGTCATCAACAAGT 57.123 36.364 0.00 0.00 42.37 3.16
113 114 6.367421 CAAAAATGCCAATGTCATCAACAAG 58.633 36.000 0.00 0.00 42.37 3.16
114 115 5.277876 GCAAAAATGCCAATGTCATCAACAA 60.278 36.000 0.00 0.00 42.37 2.83
115 116 4.213694 GCAAAAATGCCAATGTCATCAACA 59.786 37.500 0.00 0.00 43.51 3.33
116 117 4.213694 TGCAAAAATGCCAATGTCATCAAC 59.786 37.500 0.00 0.00 0.00 3.18
117 118 4.386711 TGCAAAAATGCCAATGTCATCAA 58.613 34.783 0.00 0.00 0.00 2.57
118 119 4.004196 TGCAAAAATGCCAATGTCATCA 57.996 36.364 0.00 0.00 0.00 3.07
119 120 5.328691 CAATGCAAAAATGCCAATGTCATC 58.671 37.500 0.00 0.00 0.00 2.92
120 121 4.380023 GCAATGCAAAAATGCCAATGTCAT 60.380 37.500 0.00 0.00 34.03 3.06
121 122 3.058155 GCAATGCAAAAATGCCAATGTCA 60.058 39.130 0.00 0.00 34.03 3.58
122 123 3.058155 TGCAATGCAAAAATGCCAATGTC 60.058 39.130 5.01 0.00 39.31 3.06
123 124 2.885266 TGCAATGCAAAAATGCCAATGT 59.115 36.364 5.01 0.00 39.31 2.71
124 125 3.560902 TGCAATGCAAAAATGCCAATG 57.439 38.095 5.01 0.00 39.31 2.82
125 126 5.899120 TTATGCAATGCAAAAATGCCAAT 57.101 30.435 13.45 0.00 43.62 3.16
126 127 5.009310 TGTTTATGCAATGCAAAAATGCCAA 59.991 32.000 13.45 6.14 43.62 4.52
127 128 4.517832 TGTTTATGCAATGCAAAAATGCCA 59.482 33.333 13.45 6.03 43.62 4.92
128 129 5.044428 TGTTTATGCAATGCAAAAATGCC 57.956 34.783 13.45 3.72 43.62 4.40
129 130 8.670804 TTATTGTTTATGCAATGCAAAAATGC 57.329 26.923 13.45 6.86 43.62 3.56
155 156 9.230122 TCAATTGATGCATAGAGTCTGTTTTTA 57.770 29.630 3.38 0.00 0.00 1.52
156 157 8.114331 TCAATTGATGCATAGAGTCTGTTTTT 57.886 30.769 3.38 0.00 0.00 1.94
157 158 7.692460 TCAATTGATGCATAGAGTCTGTTTT 57.308 32.000 3.38 0.00 0.00 2.43
158 159 7.704271 CATCAATTGATGCATAGAGTCTGTTT 58.296 34.615 30.11 0.00 44.44 2.83
159 160 7.260558 CATCAATTGATGCATAGAGTCTGTT 57.739 36.000 30.11 0.00 44.44 3.16
160 161 6.862711 CATCAATTGATGCATAGAGTCTGT 57.137 37.500 30.11 0.00 44.44 3.41
173 174 0.106569 TGGCCTCCGCATCAATTGAT 60.107 50.000 15.36 15.36 36.38 2.57
174 175 0.749091 CTGGCCTCCGCATCAATTGA 60.749 55.000 11.26 11.26 36.38 2.57
175 176 1.033746 ACTGGCCTCCGCATCAATTG 61.034 55.000 3.32 0.00 36.38 2.32
176 177 1.033746 CACTGGCCTCCGCATCAATT 61.034 55.000 3.32 0.00 36.38 2.32
177 178 1.452651 CACTGGCCTCCGCATCAAT 60.453 57.895 3.32 0.00 36.38 2.57
178 179 2.046023 CACTGGCCTCCGCATCAA 60.046 61.111 3.32 0.00 36.38 2.57
179 180 4.100084 CCACTGGCCTCCGCATCA 62.100 66.667 3.32 0.00 36.38 3.07
180 181 3.628646 AACCACTGGCCTCCGCATC 62.629 63.158 3.32 0.00 36.38 3.91
181 182 3.628646 GAACCACTGGCCTCCGCAT 62.629 63.158 3.32 0.00 36.38 4.73
182 183 4.329545 GAACCACTGGCCTCCGCA 62.330 66.667 3.32 0.00 36.38 5.69
184 185 3.190738 TTGGAACCACTGGCCTCCG 62.191 63.158 3.32 0.00 32.48 4.63
185 186 1.603739 GTTGGAACCACTGGCCTCC 60.604 63.158 3.32 1.03 0.00 4.30
186 187 4.081050 GTTGGAACCACTGGCCTC 57.919 61.111 3.32 0.00 0.00 4.70
226 227 3.881089 ACAATTGGCGCTTAGGTATAACC 59.119 43.478 7.64 0.00 38.99 2.85
227 228 4.334481 ACACAATTGGCGCTTAGGTATAAC 59.666 41.667 7.64 0.00 0.00 1.89
228 229 4.334203 CACACAATTGGCGCTTAGGTATAA 59.666 41.667 7.64 0.00 0.00 0.98
229 230 3.874543 CACACAATTGGCGCTTAGGTATA 59.125 43.478 7.64 0.00 0.00 1.47
230 231 2.682856 CACACAATTGGCGCTTAGGTAT 59.317 45.455 7.64 0.00 0.00 2.73
231 232 2.080693 CACACAATTGGCGCTTAGGTA 58.919 47.619 7.64 0.00 0.00 3.08
232 233 0.881118 CACACAATTGGCGCTTAGGT 59.119 50.000 7.64 0.00 0.00 3.08
233 234 0.456653 GCACACAATTGGCGCTTAGG 60.457 55.000 7.64 0.00 0.00 2.69
234 235 0.523072 AGCACACAATTGGCGCTTAG 59.477 50.000 7.64 0.00 33.10 2.18
235 236 0.958091 AAGCACACAATTGGCGCTTA 59.042 45.000 22.20 0.00 41.37 3.09
236 237 0.958091 TAAGCACACAATTGGCGCTT 59.042 45.000 24.95 24.95 43.88 4.68
237 238 0.240945 GTAAGCACACAATTGGCGCT 59.759 50.000 7.64 11.17 37.23 5.92
238 239 0.039617 TGTAAGCACACAATTGGCGC 60.040 50.000 10.83 0.00 0.00 6.53
239 240 2.318578 CTTGTAAGCACACAATTGGCG 58.681 47.619 10.83 2.90 37.75 5.69
240 241 2.035832 ACCTTGTAAGCACACAATTGGC 59.964 45.455 10.83 3.64 37.75 4.52
241 242 3.068024 ACACCTTGTAAGCACACAATTGG 59.932 43.478 10.83 1.35 37.75 3.16
242 243 4.043750 CACACCTTGTAAGCACACAATTG 58.956 43.478 3.24 3.24 37.75 2.32
243 244 3.068024 CCACACCTTGTAAGCACACAATT 59.932 43.478 3.89 0.00 37.75 2.32
244 245 2.622942 CCACACCTTGTAAGCACACAAT 59.377 45.455 3.89 0.00 37.75 2.71
245 246 2.020720 CCACACCTTGTAAGCACACAA 58.979 47.619 3.49 3.49 36.94 3.33
246 247 1.210722 TCCACACCTTGTAAGCACACA 59.789 47.619 0.00 0.00 33.30 3.72
247 248 1.961793 TCCACACCTTGTAAGCACAC 58.038 50.000 0.00 0.00 33.30 3.82
248 249 2.949177 ATCCACACCTTGTAAGCACA 57.051 45.000 0.00 0.00 0.00 4.57
249 250 3.305335 CCAAATCCACACCTTGTAAGCAC 60.305 47.826 0.00 0.00 0.00 4.40
250 251 2.890311 CCAAATCCACACCTTGTAAGCA 59.110 45.455 0.00 0.00 0.00 3.91
251 252 2.890945 ACCAAATCCACACCTTGTAAGC 59.109 45.455 0.00 0.00 0.00 3.09
252 253 5.067273 TGTACCAAATCCACACCTTGTAAG 58.933 41.667 0.00 0.00 0.00 2.34
253 254 5.050126 TGTACCAAATCCACACCTTGTAA 57.950 39.130 0.00 0.00 0.00 2.41
254 255 4.708576 TGTACCAAATCCACACCTTGTA 57.291 40.909 0.00 0.00 0.00 2.41
255 256 3.586470 TGTACCAAATCCACACCTTGT 57.414 42.857 0.00 0.00 0.00 3.16
256 257 4.927978 TTTGTACCAAATCCACACCTTG 57.072 40.909 0.00 0.00 0.00 3.61
257 258 8.113462 ACTATATTTGTACCAAATCCACACCTT 58.887 33.333 5.53 0.00 0.00 3.50
258 259 7.639378 ACTATATTTGTACCAAATCCACACCT 58.361 34.615 5.53 0.00 0.00 4.00
259 260 7.875327 ACTATATTTGTACCAAATCCACACC 57.125 36.000 5.53 0.00 0.00 4.16
260 261 9.567848 CAAACTATATTTGTACCAAATCCACAC 57.432 33.333 5.53 0.00 0.00 3.82
261 262 8.247562 GCAAACTATATTTGTACCAAATCCACA 58.752 33.333 5.53 0.00 0.00 4.17
262 263 8.247562 TGCAAACTATATTTGTACCAAATCCAC 58.752 33.333 5.53 0.00 0.00 4.02
263 264 8.354711 TGCAAACTATATTTGTACCAAATCCA 57.645 30.769 5.53 0.00 0.00 3.41
264 265 9.248291 CATGCAAACTATATTTGTACCAAATCC 57.752 33.333 5.53 0.00 0.00 3.01
265 266 9.801873 ACATGCAAACTATATTTGTACCAAATC 57.198 29.630 5.53 0.00 0.00 2.17
269 270 9.456147 AGTAACATGCAAACTATATTTGTACCA 57.544 29.630 0.00 0.00 0.00 3.25
272 273 9.781834 GCAAGTAACATGCAAACTATATTTGTA 57.218 29.630 0.00 0.00 43.29 2.41
273 274 8.522830 AGCAAGTAACATGCAAACTATATTTGT 58.477 29.630 6.07 0.00 46.22 2.83
274 275 8.915871 AGCAAGTAACATGCAAACTATATTTG 57.084 30.769 6.07 0.00 46.22 2.32
284 285 9.781834 GTGTTATATTTAGCAAGTAACATGCAA 57.218 29.630 6.07 0.00 46.22 4.08
285 286 8.951243 TGTGTTATATTTAGCAAGTAACATGCA 58.049 29.630 6.07 0.00 46.22 3.96
286 287 9.781834 TTGTGTTATATTTAGCAAGTAACATGC 57.218 29.630 0.00 0.00 44.15 4.06
293 294 9.073475 TGGTCTTTTGTGTTATATTTAGCAAGT 57.927 29.630 0.00 0.00 0.00 3.16
294 295 9.906660 TTGGTCTTTTGTGTTATATTTAGCAAG 57.093 29.630 0.00 0.00 0.00 4.01
350 351 5.192176 TGTGCATTATGGATGAAGTTAGCA 58.808 37.500 0.00 0.00 38.03 3.49
356 357 7.201574 CCAAAATGTTGTGCATTATGGATGAAG 60.202 37.037 0.00 0.00 46.29 3.02
362 363 6.204301 TCAAACCAAAATGTTGTGCATTATGG 59.796 34.615 0.00 0.00 46.29 2.74
364 365 6.204495 GGTCAAACCAAAATGTTGTGCATTAT 59.796 34.615 0.00 0.00 41.49 1.28
371 372 3.697045 TCTCGGTCAAACCAAAATGTTGT 59.303 39.130 0.00 0.00 38.47 3.32
389 390 9.860898 AAAAATCTAAAGGATCCAAAAATCTCG 57.139 29.630 15.82 0.00 32.76 4.04
424 425 4.588528 ACATTCATAACTTGTTTGGCCTGT 59.411 37.500 3.32 0.00 0.00 4.00
425 426 5.138125 ACATTCATAACTTGTTTGGCCTG 57.862 39.130 3.32 0.00 0.00 4.85
445 446 4.445735 GGGCCCTTGATAGTAAGCAATACA 60.446 45.833 17.04 0.00 36.94 2.29
512 521 7.562135 TCACAGAAACCTAGTTGTAGTTTCTT 58.438 34.615 16.68 9.27 36.05 2.52
513 522 7.120923 TCACAGAAACCTAGTTGTAGTTTCT 57.879 36.000 14.63 14.63 37.24 2.52
514 523 7.494952 ACTTCACAGAAACCTAGTTGTAGTTTC 59.505 37.037 11.45 11.45 32.29 2.78
559 571 3.625764 TCGCTGACTTTGTTATTATGGGC 59.374 43.478 0.00 0.00 0.00 5.36
568 580 4.051922 CTCTAGTGTTCGCTGACTTTGTT 58.948 43.478 0.00 0.00 0.00 2.83
580 592 4.134563 CCTCTCCTAGCTCTCTAGTGTTC 58.865 52.174 0.00 0.00 40.51 3.18
581 593 3.117663 CCCTCTCCTAGCTCTCTAGTGTT 60.118 52.174 0.00 0.00 40.51 3.32
602 614 0.639943 ATTAAATCACCCCCACCCCC 59.360 55.000 0.00 0.00 0.00 5.40
607 619 7.563556 GGAGAAAGAAATATTAAATCACCCCCA 59.436 37.037 0.00 0.00 0.00 4.96
609 621 8.414003 GTGGAGAAAGAAATATTAAATCACCCC 58.586 37.037 0.00 0.00 0.00 4.95
635 647 4.094294 TCAGAACAAAACTTCCACGTCAAG 59.906 41.667 2.76 2.76 0.00 3.02
655 669 1.291877 GCTACACACGGCTTGGTCAG 61.292 60.000 0.00 0.00 0.00 3.51
661 675 3.000727 GTTTGATAGCTACACACGGCTT 58.999 45.455 0.00 0.00 39.65 4.35
682 696 8.815141 TCAAGGTGATTAATTGTGTTCATTTG 57.185 30.769 0.00 0.00 0.00 2.32
745 759 1.989966 CTGCGAGCATTTGGAGGCAG 61.990 60.000 0.00 0.00 41.42 4.85
759 773 1.100463 TGAGTTTGGCTTTGCTGCGA 61.100 50.000 0.00 0.00 0.00 5.10
788 805 8.088981 TCACTCTATTGTTGTTCTTCTACTTCC 58.911 37.037 0.00 0.00 0.00 3.46
823 840 0.737715 GAAGCAGTTCGCCATCTCGT 60.738 55.000 0.00 0.00 44.04 4.18
908 925 1.724429 CCTCTCTTGCTCTGTCTTGC 58.276 55.000 0.00 0.00 0.00 4.01
1065 1117 1.902432 GATCTCGTCGGGGTAGGGG 60.902 68.421 0.00 0.00 0.00 4.79
1149 1201 1.227704 CCCACGGTACACAACAGCA 60.228 57.895 0.00 0.00 0.00 4.41
1396 1448 7.552687 ACGAGCTTTATGACAGAAAATCCATTA 59.447 33.333 0.00 0.00 0.00 1.90
1449 1501 5.238432 TCAATTGCTCATACGTGTTTGAAGT 59.762 36.000 0.00 0.00 0.00 3.01
1450 1502 5.688823 TCAATTGCTCATACGTGTTTGAAG 58.311 37.500 0.00 0.00 0.00 3.02
1710 1762 6.983984 TGTTTCAATTCTTGCATCAATCTCA 58.016 32.000 0.00 0.00 0.00 3.27
1879 1931 9.567776 TGTGAAAATAGGTTCAGAGTTTATTCA 57.432 29.630 0.00 0.00 38.17 2.57
1888 1940 9.300681 AGATGAAAATGTGAAAATAGGTTCAGA 57.699 29.630 0.00 0.00 38.17 3.27
1901 1956 7.661027 TGTGACACTGAATAGATGAAAATGTGA 59.339 33.333 7.20 0.00 0.00 3.58
2038 2094 8.160765 TGGGAGTTGAAGTCTATTTTTGATACA 58.839 33.333 0.00 0.00 0.00 2.29
2073 2129 8.292444 TCATGTTTATTAAGCCAATAAGTGCT 57.708 30.769 0.00 0.00 39.63 4.40
2135 2191 2.162408 GGTCTTTCTTGAAATCCGCCTG 59.838 50.000 0.00 0.00 0.00 4.85
2187 2243 9.643778 ATTTCCCCCTCTTAAATCCTACATATA 57.356 33.333 0.00 0.00 0.00 0.86
2188 2244 7.964730 TTTCCCCCTCTTAAATCCTACATAT 57.035 36.000 0.00 0.00 0.00 1.78
2189 2245 7.574750 TGATTTCCCCCTCTTAAATCCTACATA 59.425 37.037 0.00 0.00 38.34 2.29
2190 2246 6.392842 TGATTTCCCCCTCTTAAATCCTACAT 59.607 38.462 0.00 0.00 38.34 2.29
2191 2247 5.734140 TGATTTCCCCCTCTTAAATCCTACA 59.266 40.000 0.00 0.00 38.34 2.74
2192 2248 6.262056 TGATTTCCCCCTCTTAAATCCTAC 57.738 41.667 0.00 0.00 38.34 3.18
2193 2249 6.918951 TTGATTTCCCCCTCTTAAATCCTA 57.081 37.500 0.00 0.00 38.34 2.94
2195 2251 6.627287 CGTTTTGATTTCCCCCTCTTAAATCC 60.627 42.308 0.00 0.00 38.34 3.01
2201 2276 2.525368 CCGTTTTGATTTCCCCCTCTT 58.475 47.619 0.00 0.00 0.00 2.85
2231 2308 1.476833 CCCCCAACTTACATCATCCCG 60.477 57.143 0.00 0.00 0.00 5.14
2246 4217 2.274104 GTTATTGCTCGGCCCCCA 59.726 61.111 0.00 0.00 0.00 4.96
2253 4226 3.121663 CGCAGTAGATTCGTTATTGCTCG 60.122 47.826 0.00 0.00 33.22 5.03
2274 4247 9.731819 ATCCTACATATATAAGAATTGTACGCG 57.268 33.333 3.53 3.53 0.00 6.01
2311 4304 0.107654 AGCCGGCCACTTGATTAGTC 60.108 55.000 26.15 0.00 33.85 2.59
2365 4358 4.737352 GCCATGCATCCGATTTTTGTATGT 60.737 41.667 0.00 0.00 33.33 2.29
2399 4392 1.725641 TTATTGGTCGAGTGCTGCTG 58.274 50.000 0.00 0.00 0.00 4.41
2461 7152 7.201741 CGAGGTAGAGAGAGAATTGTAATGTGA 60.202 40.741 0.00 0.00 0.00 3.58
2462 7153 6.915300 CGAGGTAGAGAGAGAATTGTAATGTG 59.085 42.308 0.00 0.00 0.00 3.21
2469 7160 6.800543 TGAATTCGAGGTAGAGAGAGAATTG 58.199 40.000 0.04 0.00 38.10 2.32
2496 7187 1.450312 GGATGAAGAGGCCACACCG 60.450 63.158 5.01 0.00 46.52 4.94
2497 7188 0.257039 ATGGATGAAGAGGCCACACC 59.743 55.000 5.01 5.00 33.93 4.16
2498 7189 1.211457 AGATGGATGAAGAGGCCACAC 59.789 52.381 5.01 0.00 33.93 3.82
2500 7191 4.363991 AATAGATGGATGAAGAGGCCAC 57.636 45.455 5.01 0.00 33.93 5.01
2504 7195 7.683578 TGATTGGTAATAGATGGATGAAGAGG 58.316 38.462 0.00 0.00 0.00 3.69
2516 7207 8.504811 TGTGGAGGATTATGATTGGTAATAGA 57.495 34.615 0.00 0.00 0.00 1.98
2526 7217 5.579753 AAGCTGATGTGGAGGATTATGAT 57.420 39.130 0.00 0.00 0.00 2.45
2569 7260 8.280497 ACTGAGTAATGCTACGTTTACAAAAAG 58.720 33.333 9.79 4.89 32.87 2.27
2576 7267 4.178540 GCCACTGAGTAATGCTACGTTTA 58.821 43.478 0.00 0.00 32.87 2.01
2593 7284 1.841302 TTGCTCCTTCATCCGCCACT 61.841 55.000 0.00 0.00 0.00 4.00
2644 7335 2.028748 CCGAACGGAGGGAGTAAAAAGA 60.029 50.000 7.53 0.00 37.50 2.52
2664 7355 6.543736 GTCCATTTTCGAGACAAGTAATTCC 58.456 40.000 0.00 0.00 0.00 3.01
2665 7356 6.128634 ACGTCCATTTTCGAGACAAGTAATTC 60.129 38.462 3.11 0.00 0.00 2.17
2666 7357 5.699458 ACGTCCATTTTCGAGACAAGTAATT 59.301 36.000 3.11 0.00 0.00 1.40
2667 7358 5.235516 ACGTCCATTTTCGAGACAAGTAAT 58.764 37.500 3.11 0.00 0.00 1.89
2668 7359 4.624015 ACGTCCATTTTCGAGACAAGTAA 58.376 39.130 3.11 0.00 0.00 2.24
2669 7360 4.247267 ACGTCCATTTTCGAGACAAGTA 57.753 40.909 3.11 0.00 0.00 2.24
2670 7361 3.107642 ACGTCCATTTTCGAGACAAGT 57.892 42.857 3.11 0.00 0.00 3.16
2671 7362 5.103000 AGATACGTCCATTTTCGAGACAAG 58.897 41.667 0.00 0.00 0.00 3.16
2672 7363 5.068234 AGATACGTCCATTTTCGAGACAA 57.932 39.130 0.00 0.00 0.00 3.18
2673 7364 4.713824 AGATACGTCCATTTTCGAGACA 57.286 40.909 0.00 0.00 0.00 3.41
2674 7365 6.057627 TCTAGATACGTCCATTTTCGAGAC 57.942 41.667 0.00 0.00 0.00 3.36
2675 7366 6.318144 AGTTCTAGATACGTCCATTTTCGAGA 59.682 38.462 0.00 0.00 0.00 4.04
2676 7367 6.496571 AGTTCTAGATACGTCCATTTTCGAG 58.503 40.000 0.00 0.00 0.00 4.04
2677 7368 6.446781 AGTTCTAGATACGTCCATTTTCGA 57.553 37.500 0.00 0.00 0.00 3.71
2678 7369 8.624701 TTTAGTTCTAGATACGTCCATTTTCG 57.375 34.615 0.00 0.00 0.00 3.46
2682 7373 9.674824 CGTATTTTAGTTCTAGATACGTCCATT 57.325 33.333 18.48 0.00 40.12 3.16
2703 7394 9.832445 ACAGAAATGGATGTATCTAAACGTATT 57.168 29.630 0.00 0.00 0.00 1.89
2704 7395 9.261180 CACAGAAATGGATGTATCTAAACGTAT 57.739 33.333 0.00 0.00 0.00 3.06
2705 7396 8.471609 TCACAGAAATGGATGTATCTAAACGTA 58.528 33.333 0.00 0.00 0.00 3.57
2706 7397 7.277981 GTCACAGAAATGGATGTATCTAAACGT 59.722 37.037 0.00 0.00 0.00 3.99
2707 7398 7.277760 TGTCACAGAAATGGATGTATCTAAACG 59.722 37.037 0.00 0.00 0.00 3.60
2708 7399 8.492673 TGTCACAGAAATGGATGTATCTAAAC 57.507 34.615 0.00 0.00 0.00 2.01
2709 7400 9.166173 CTTGTCACAGAAATGGATGTATCTAAA 57.834 33.333 0.00 0.00 0.00 1.85
2710 7401 8.321353 ACTTGTCACAGAAATGGATGTATCTAA 58.679 33.333 0.00 0.00 0.00 2.10
2711 7402 7.851228 ACTTGTCACAGAAATGGATGTATCTA 58.149 34.615 0.00 0.00 0.00 1.98
2712 7403 6.715280 ACTTGTCACAGAAATGGATGTATCT 58.285 36.000 0.00 0.00 0.00 1.98
2713 7404 6.992063 ACTTGTCACAGAAATGGATGTATC 57.008 37.500 0.00 0.00 0.00 2.24
2714 7405 9.466497 AATTACTTGTCACAGAAATGGATGTAT 57.534 29.630 0.00 0.00 0.00 2.29
2715 7406 8.862325 AATTACTTGTCACAGAAATGGATGTA 57.138 30.769 0.00 0.00 0.00 2.29
2716 7407 7.094205 GGAATTACTTGTCACAGAAATGGATGT 60.094 37.037 0.00 0.00 0.00 3.06
2717 7408 7.253422 GGAATTACTTGTCACAGAAATGGATG 58.747 38.462 0.00 0.00 0.00 3.51
2718 7409 6.094048 CGGAATTACTTGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
2719 7410 5.411361 CGGAATTACTTGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
2720 7411 5.411361 TCGGAATTACTTGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
2721 7412 6.480524 TCGGAATTACTTGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
2722 7413 6.347402 CGTTCGGAATTACTTGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
2723 7414 5.050634 CGTTCGGAATTACTTGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
2724 7415 4.446385 CGTTCGGAATTACTTGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
2725 7416 3.985279 CGTTCGGAATTACTTGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
2726 7417 3.122948 CCGTTCGGAATTACTTGTCACAG 59.877 47.826 5.19 0.00 0.00 3.66
2727 7418 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
2728 7419 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
2729 7420 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2730 7421 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2731 7422 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2732 7423 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2733 7424 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2734 7425 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2735 7426 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2736 7427 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2737 7428 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2738 7429 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2739 7430 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2740 7431 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2741 7432 0.172803 CAAGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
2742 7433 0.172803 CCAAGTACTCCCTCCGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
2743 7434 0.535797 CCCAAGTACTCCCTCCGTTC 59.464 60.000 0.00 0.00 0.00 3.95
2744 7435 0.115745 TCCCAAGTACTCCCTCCGTT 59.884 55.000 0.00 0.00 0.00 4.44
2745 7436 0.338814 ATCCCAAGTACTCCCTCCGT 59.661 55.000 0.00 0.00 0.00 4.69
2746 7437 0.753262 CATCCCAAGTACTCCCTCCG 59.247 60.000 0.00 0.00 0.00 4.63
2747 7438 1.763545 GTCATCCCAAGTACTCCCTCC 59.236 57.143 0.00 0.00 0.00 4.30
2748 7439 2.168728 GTGTCATCCCAAGTACTCCCTC 59.831 54.545 0.00 0.00 0.00 4.30
2749 7440 2.188817 GTGTCATCCCAAGTACTCCCT 58.811 52.381 0.00 0.00 0.00 4.20
2750 7441 1.134788 CGTGTCATCCCAAGTACTCCC 60.135 57.143 0.00 0.00 0.00 4.30
2751 7442 1.739371 GCGTGTCATCCCAAGTACTCC 60.739 57.143 0.00 0.00 0.00 3.85
2752 7443 1.641577 GCGTGTCATCCCAAGTACTC 58.358 55.000 0.00 0.00 0.00 2.59
2753 7444 0.108804 CGCGTGTCATCCCAAGTACT 60.109 55.000 0.00 0.00 0.00 2.73
2754 7445 0.108992 TCGCGTGTCATCCCAAGTAC 60.109 55.000 5.77 0.00 0.00 2.73
2755 7446 0.604073 TTCGCGTGTCATCCCAAGTA 59.396 50.000 5.77 0.00 0.00 2.24
2756 7447 0.949105 GTTCGCGTGTCATCCCAAGT 60.949 55.000 5.77 0.00 0.00 3.16
2757 7448 0.948623 TGTTCGCGTGTCATCCCAAG 60.949 55.000 5.77 0.00 0.00 3.61
2758 7449 1.069935 TGTTCGCGTGTCATCCCAA 59.930 52.632 5.77 0.00 0.00 4.12
2759 7450 2.737830 TGTTCGCGTGTCATCCCA 59.262 55.556 5.77 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.