Multiple sequence alignment - TraesCS2A01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G022700 chr2A 100.000 4904 0 0 1 4904 10996895 10991992 0.000000e+00 9057.0
1 TraesCS2A01G022700 chr2A 86.702 188 20 4 525 708 630946949 630946763 2.310000e-48 204.0
2 TraesCS2A01G022700 chr2B 90.180 2393 142 53 790 3135 14836767 14834421 0.000000e+00 3031.0
3 TraesCS2A01G022700 chr2B 90.578 1592 83 22 3141 4671 14834458 14832873 0.000000e+00 2047.0
4 TraesCS2A01G022700 chr2B 91.584 202 14 2 4668 4867 14817308 14817108 4.840000e-70 276.0
5 TraesCS2A01G022700 chr2D 91.948 2012 122 22 1150 3142 10725230 10723240 0.000000e+00 2782.0
6 TraesCS2A01G022700 chr2D 93.146 1211 69 11 3141 4340 10723283 10722076 0.000000e+00 1764.0
7 TraesCS2A01G022700 chr2D 81.618 544 80 14 1 528 10726187 10725648 2.710000e-117 433.0
8 TraesCS2A01G022700 chr2D 86.916 321 18 19 790 1104 10725535 10725233 6.080000e-89 339.0
9 TraesCS2A01G022700 chr2D 90.741 162 12 3 516 677 619720536 619720694 3.850000e-51 213.0
10 TraesCS2A01G022700 chr2D 88.793 116 9 2 4691 4804 10721744 10721631 6.620000e-29 139.0
11 TraesCS2A01G022700 chrUn 84.026 313 29 12 1434 1733 331842611 331842915 1.040000e-71 281.0
12 TraesCS2A01G022700 chrUn 83.750 320 25 16 1434 1731 354743476 354743790 1.340000e-70 278.0
13 TraesCS2A01G022700 chrUn 83.438 320 26 16 1434 1731 351214653 351214967 6.250000e-69 272.0
14 TraesCS2A01G022700 chrUn 86.235 247 15 10 1499 1731 430358646 430358405 2.930000e-62 250.0
15 TraesCS2A01G022700 chrUn 86.603 209 9 10 1537 1731 449931353 449931556 3.850000e-51 213.0
16 TraesCS2A01G022700 chr4B 83.750 320 25 16 1434 1731 151526271 151525957 1.340000e-70 278.0
17 TraesCS2A01G022700 chr3D 83.699 319 26 15 1434 1731 213404014 213403701 1.340000e-70 278.0
18 TraesCS2A01G022700 chr3D 87.912 91 11 0 3186 3276 437189898 437189808 1.870000e-19 108.0
19 TraesCS2A01G022700 chr3D 81.481 108 12 8 21 124 3034150 3034253 1.130000e-11 82.4
20 TraesCS2A01G022700 chr4D 85.490 255 20 8 1499 1741 354587503 354587254 2.930000e-62 250.0
21 TraesCS2A01G022700 chr4D 93.103 87 6 0 3191 3277 497058796 497058710 1.430000e-25 128.0
22 TraesCS2A01G022700 chr4D 89.412 85 8 1 3191 3275 504090711 504090794 6.710000e-19 106.0
23 TraesCS2A01G022700 chr5A 93.836 146 6 3 514 659 159614380 159614522 2.970000e-52 217.0
24 TraesCS2A01G022700 chr5B 94.891 137 7 0 523 659 114693754 114693890 1.070000e-51 215.0
25 TraesCS2A01G022700 chr5B 83.838 198 27 5 520 716 417000565 417000372 3.010000e-42 183.0
26 TraesCS2A01G022700 chr5B 94.595 37 0 2 82 118 495220202 495220236 6.860000e-04 56.5
27 TraesCS2A01G022700 chr4A 94.326 141 5 3 525 663 661975137 661974998 3.850000e-51 213.0
28 TraesCS2A01G022700 chr7A 92.000 150 9 3 510 659 180859692 180859546 1.790000e-49 207.0
29 TraesCS2A01G022700 chr6A 92.466 146 8 3 514 659 13194733 13194875 6.430000e-49 206.0
30 TraesCS2A01G022700 chr6D 85.263 190 22 6 528 712 303203975 303203787 1.800000e-44 191.0
31 TraesCS2A01G022700 chr6D 89.655 87 9 0 3190 3276 39676500 39676414 1.440000e-20 111.0
32 TraesCS2A01G022700 chr7B 76.205 332 57 15 4025 4340 206332217 206332542 6.570000e-34 156.0
33 TraesCS2A01G022700 chr7D 89.011 91 9 1 3191 3281 595026477 595026566 1.440000e-20 111.0
34 TraesCS2A01G022700 chr5D 89.773 88 8 1 3191 3278 122198514 122198428 1.440000e-20 111.0
35 TraesCS2A01G022700 chr3A 89.535 86 8 1 3191 3275 264718081 264718166 1.870000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G022700 chr2A 10991992 10996895 4903 True 9057.0 9057 100.0000 1 4904 1 chr2A.!!$R1 4903
1 TraesCS2A01G022700 chr2B 14832873 14836767 3894 True 2539.0 3031 90.3790 790 4671 2 chr2B.!!$R2 3881
2 TraesCS2A01G022700 chr2D 10721631 10726187 4556 True 1091.4 2782 88.4842 1 4804 5 chr2D.!!$R1 4803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
785 799 0.107017 GGCTCATTGGCAAGCTCCTA 60.107 55.0 5.96 0.0 41.37 2.94 F
2506 2573 0.308993 AGCTGCTTCACTTGAAACGC 59.691 50.0 0.00 0.0 33.07 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2728 2796 0.925558 TGGGACCACCATATGTGCAT 59.074 50.0 1.24 0.0 46.8 3.96 R
4478 4636 0.249699 ACAATTCGTGCGTGGTCAGA 60.250 50.0 0.00 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 5.713025 TGATGTCTACTTTTACGTACACCC 58.287 41.667 0.00 0.00 0.00 4.61
76 78 7.284820 ACACCCCCTACATTATTTGTATACAC 58.715 38.462 4.68 0.00 40.02 2.90
85 87 8.276252 ACATTATTTGTATACACCAGGAACAC 57.724 34.615 4.68 0.00 36.57 3.32
97 99 7.214467 ACACCAGGAACACTTTTTATACATG 57.786 36.000 0.00 0.00 0.00 3.21
98 100 6.775629 ACACCAGGAACACTTTTTATACATGT 59.224 34.615 2.69 2.69 0.00 3.21
271 274 8.397906 TCATTTAATCTTTTGATGTCTAAGGCG 58.602 33.333 0.00 0.00 39.48 5.52
287 290 6.311935 GTCTAAGGCGTTTCATACACATTGTA 59.688 38.462 0.00 0.00 37.24 2.41
288 291 4.939509 AGGCGTTTCATACACATTGTAC 57.060 40.909 0.00 0.00 35.42 2.90
292 295 5.737290 GGCGTTTCATACACATTGTACATTC 59.263 40.000 0.00 0.00 35.42 2.67
316 320 9.616156 TTCACATACACCTTGTACTTTCTTTTA 57.384 29.630 0.00 0.00 35.42 1.52
345 349 8.554528 CATCAGGAACATTTGTGTATAGATGTC 58.445 37.037 0.00 0.00 31.94 3.06
347 351 8.321353 TCAGGAACATTTGTGTATAGATGTCTT 58.679 33.333 0.00 0.00 31.94 3.01
415 429 9.436957 CTACTTTCCTCATACATGTTTTACACT 57.563 33.333 2.30 0.00 0.00 3.55
416 430 8.099364 ACTTTCCTCATACATGTTTTACACTG 57.901 34.615 2.30 0.00 0.00 3.66
419 433 7.667043 TCCTCATACATGTTTTACACTGTTC 57.333 36.000 2.30 0.00 0.00 3.18
436 450 5.062934 CACTGTTCGTGTTCACTAGAAACAA 59.937 40.000 14.21 1.69 38.84 2.83
439 453 6.711579 TGTTCGTGTTCACTAGAAACAATTC 58.288 36.000 14.21 5.09 35.08 2.17
443 457 7.406553 TCGTGTTCACTAGAAACAATTCTTTG 58.593 34.615 14.21 0.00 43.43 2.77
446 460 9.651718 GTGTTCACTAGAAACAATTCTTTGTAG 57.348 33.333 14.21 8.28 45.30 2.74
450 464 9.219603 TCACTAGAAACAATTCTTTGTAGATGG 57.780 33.333 14.55 6.36 45.30 3.51
451 465 9.003658 CACTAGAAACAATTCTTTGTAGATGGT 57.996 33.333 14.55 0.00 45.30 3.55
470 484 8.851541 AGATGGTTAACATTTTTCAAATGCAT 57.148 26.923 8.10 0.00 40.72 3.96
541 555 9.327628 CATATATATATATACTCCCTCCGTCCG 57.672 40.741 13.52 0.00 0.00 4.79
542 556 5.901413 ATATATATACTCCCTCCGTCCGA 57.099 43.478 0.00 0.00 0.00 4.55
543 557 2.965671 ATATACTCCCTCCGTCCGAA 57.034 50.000 0.00 0.00 0.00 4.30
544 558 2.734755 TATACTCCCTCCGTCCGAAA 57.265 50.000 0.00 0.00 0.00 3.46
545 559 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
546 560 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
611 625 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
618 632 8.152023 ACATCTAGATACATCCCCTTTTATCC 57.848 38.462 4.54 0.00 0.00 2.59
619 633 7.739444 ACATCTAGATACATCCCCTTTTATCCA 59.261 37.037 4.54 0.00 0.00 3.41
620 634 8.776119 CATCTAGATACATCCCCTTTTATCCAT 58.224 37.037 4.54 0.00 0.00 3.41
621 635 8.757307 TCTAGATACATCCCCTTTTATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
622 636 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
623 637 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
624 638 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
625 639 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
626 640 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
627 641 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
628 642 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
629 643 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
630 644 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
631 645 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
632 646 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
633 647 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
634 648 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
640 654 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
641 655 6.432783 TCCATTTTGATGACAAGTATTTCCGT 59.567 34.615 0.00 0.00 37.32 4.69
642 656 7.608376 TCCATTTTGATGACAAGTATTTCCGTA 59.392 33.333 0.00 0.00 37.32 4.02
643 657 7.696453 CCATTTTGATGACAAGTATTTCCGTAC 59.304 37.037 0.00 0.00 37.32 3.67
644 658 6.397831 TTTGATGACAAGTATTTCCGTACG 57.602 37.500 8.69 8.69 37.32 3.67
645 659 4.426416 TGATGACAAGTATTTCCGTACGG 58.574 43.478 28.66 28.66 0.00 4.02
646 660 4.158209 TGATGACAAGTATTTCCGTACGGA 59.842 41.667 32.61 32.61 43.52 4.69
647 661 4.100707 TGACAAGTATTTCCGTACGGAG 57.899 45.455 33.67 23.26 46.06 4.63
648 662 3.119388 TGACAAGTATTTCCGTACGGAGG 60.119 47.826 33.67 20.29 46.06 4.30
649 663 2.167075 ACAAGTATTTCCGTACGGAGGG 59.833 50.000 33.67 20.89 46.06 4.30
650 664 2.428171 CAAGTATTTCCGTACGGAGGGA 59.572 50.000 33.67 24.13 46.06 4.20
651 665 2.305009 AGTATTTCCGTACGGAGGGAG 58.695 52.381 33.67 8.83 46.06 4.30
652 666 2.027385 GTATTTCCGTACGGAGGGAGT 58.973 52.381 33.67 20.06 46.06 3.85
663 677 8.713971 TCCGTACGGAGGGAGTATATATTTATA 58.286 37.037 32.61 3.76 39.76 0.98
710 724 8.751302 AGTGAACAAAATAAAGAAAACAACGT 57.249 26.923 0.00 0.00 0.00 3.99
743 757 3.524763 TTTTAGTGGTAAAACGAGCGC 57.475 42.857 0.00 0.00 33.93 5.92
744 758 2.443887 TTAGTGGTAAAACGAGCGCT 57.556 45.000 11.27 11.27 40.57 5.92
745 759 2.443887 TAGTGGTAAAACGAGCGCTT 57.556 45.000 13.26 0.00 38.54 4.68
748 762 2.735134 AGTGGTAAAACGAGCGCTTAAG 59.265 45.455 13.26 9.30 34.07 1.85
749 763 2.070783 TGGTAAAACGAGCGCTTAAGG 58.929 47.619 13.26 4.08 0.00 2.69
750 764 1.201998 GGTAAAACGAGCGCTTAAGGC 60.202 52.381 13.26 6.24 37.64 4.35
752 766 1.583495 AAAACGAGCGCTTAAGGCCC 61.583 55.000 13.26 0.00 37.74 5.80
753 767 3.971109 AACGAGCGCTTAAGGCCCC 62.971 63.158 13.26 0.00 37.74 5.80
754 768 4.162690 CGAGCGCTTAAGGCCCCT 62.163 66.667 13.26 0.00 37.74 4.79
755 769 2.514824 GAGCGCTTAAGGCCCCTG 60.515 66.667 13.26 0.00 37.74 4.45
756 770 4.115199 AGCGCTTAAGGCCCCTGG 62.115 66.667 2.64 0.00 37.74 4.45
781 795 2.753043 CCGGCTCATTGGCAAGCT 60.753 61.111 5.96 0.00 41.89 3.74
782 796 2.768492 CCGGCTCATTGGCAAGCTC 61.768 63.158 5.96 0.00 41.89 4.09
783 797 2.768492 CGGCTCATTGGCAAGCTCC 61.768 63.158 5.96 3.47 41.89 4.70
784 798 1.379576 GGCTCATTGGCAAGCTCCT 60.380 57.895 5.96 0.00 41.37 3.69
785 799 0.107017 GGCTCATTGGCAAGCTCCTA 60.107 55.000 5.96 0.00 41.37 2.94
786 800 1.020437 GCTCATTGGCAAGCTCCTAC 58.980 55.000 5.96 0.00 35.60 3.18
787 801 1.407989 GCTCATTGGCAAGCTCCTACT 60.408 52.381 5.96 0.00 35.60 2.57
788 802 2.286872 CTCATTGGCAAGCTCCTACTG 58.713 52.381 5.96 0.00 0.00 2.74
789 803 0.737219 CATTGGCAAGCTCCTACTGC 59.263 55.000 5.96 0.00 0.00 4.40
790 804 0.394899 ATTGGCAAGCTCCTACTGCC 60.395 55.000 17.77 17.77 45.19 4.85
791 805 1.492133 TTGGCAAGCTCCTACTGCCT 61.492 55.000 23.33 0.00 45.20 4.75
792 806 1.153269 GGCAAGCTCCTACTGCCTC 60.153 63.158 17.41 0.00 41.99 4.70
793 807 1.599047 GCAAGCTCCTACTGCCTCA 59.401 57.895 0.00 0.00 0.00 3.86
794 808 0.742635 GCAAGCTCCTACTGCCTCAC 60.743 60.000 0.00 0.00 0.00 3.51
795 809 0.610174 CAAGCTCCTACTGCCTCACA 59.390 55.000 0.00 0.00 0.00 3.58
805 819 2.046507 GCCTCACAGCCTCACAGG 60.047 66.667 0.00 0.00 38.80 4.00
819 833 2.425592 CAGGCTCACACCAACCGA 59.574 61.111 0.00 0.00 0.00 4.69
820 834 1.003355 CAGGCTCACACCAACCGAT 60.003 57.895 0.00 0.00 0.00 4.18
852 868 3.495806 GCATTATCTCCTCCCTCCAACAG 60.496 52.174 0.00 0.00 0.00 3.16
897 915 1.414181 CATTATCTCCTCCACCGCTGT 59.586 52.381 0.00 0.00 0.00 4.40
1025 1052 4.804420 AGGATGCTCCCCTGCCGA 62.804 66.667 0.00 0.00 37.19 5.54
1107 1134 3.315949 TACAACCGCGCCCCTCTT 61.316 61.111 0.00 0.00 0.00 2.85
1108 1135 2.886134 TACAACCGCGCCCCTCTTT 61.886 57.895 0.00 0.00 0.00 2.52
1109 1136 1.543065 TACAACCGCGCCCCTCTTTA 61.543 55.000 0.00 0.00 0.00 1.85
1113 1143 0.746923 ACCGCGCCCCTCTTTATTTC 60.747 55.000 0.00 0.00 0.00 2.17
1117 1147 1.676529 GCGCCCCTCTTTATTTCTTCC 59.323 52.381 0.00 0.00 0.00 3.46
1124 1154 5.340360 CCCCTCTTTATTTCTTCCTGGATGT 60.340 44.000 9.18 0.00 0.00 3.06
1130 1160 9.367160 TCTTTATTTCTTCCTGGATGTTTTCTT 57.633 29.630 9.18 0.00 0.00 2.52
1173 1216 1.468520 CACACTTGGCGGATAAGGTTG 59.531 52.381 0.00 0.00 0.00 3.77
1179 1229 3.655615 TGGCGGATAAGGTTGGTAATT 57.344 42.857 0.00 0.00 0.00 1.40
1278 1328 2.388232 GGAGTAACCGCTGCCGTTG 61.388 63.158 15.06 0.00 0.00 4.10
1310 1360 5.009510 TCGGCATCACTTTTCTTGAAAATCA 59.990 36.000 8.69 0.00 0.00 2.57
1359 1412 7.999679 TCAATTTCATTATAAGGAACTGCTGG 58.000 34.615 11.88 0.79 40.86 4.85
1378 1431 3.879295 CTGGTGCTGTATTGTCAATAGGG 59.121 47.826 5.49 3.52 0.00 3.53
1392 1446 3.012959 TCAATAGGGAGAGAGGGTTCACT 59.987 47.826 0.00 0.00 0.00 3.41
1401 1455 1.974236 AGAGGGTTCACTCTGTTCCAG 59.026 52.381 3.61 0.00 45.70 3.86
1453 1507 7.014134 TCAGTTGAGGCTCATCAAAATACAAAA 59.986 33.333 23.56 0.82 40.72 2.44
1525 1581 7.828508 TGATTAAATTGCTGCTCCTGAATAT 57.171 32.000 0.00 0.00 0.00 1.28
1580 1636 7.888021 TCCACTCTATTTTCTCTTTGCCAAATA 59.112 33.333 0.00 0.00 0.00 1.40
1587 1651 5.759506 TTCTCTTTGCCAAATAAACGTCA 57.240 34.783 0.00 0.00 0.00 4.35
1618 1683 4.081365 CCCAAGTCTTCTAGACCTCTTTCC 60.081 50.000 0.00 0.00 46.18 3.13
1619 1684 4.381079 CCAAGTCTTCTAGACCTCTTTCCG 60.381 50.000 0.00 0.00 46.18 4.30
1682 1747 6.338146 CAAGTCTCGGTATCTTATTGGTGAA 58.662 40.000 0.00 0.00 0.00 3.18
1707 1772 9.736023 AAACTGAATACTTGAAATTCAACAGAC 57.264 29.630 21.96 8.40 41.50 3.51
1727 1792 6.013725 ACAGACCCCTTGTTTTCTTTTTCTTT 60.014 34.615 0.00 0.00 0.00 2.52
1728 1793 6.878923 CAGACCCCTTGTTTTCTTTTTCTTTT 59.121 34.615 0.00 0.00 0.00 2.27
1790 1855 4.734398 AGGACTTGTGCAATCAAAACAA 57.266 36.364 0.00 0.00 33.06 2.83
1902 1967 4.394729 CAAGAGCTGTTACAAACCCCTTA 58.605 43.478 0.00 0.00 0.00 2.69
1993 2059 6.205853 TGTTATGCAGTCTTTATCCGTGTTTT 59.794 34.615 0.00 0.00 0.00 2.43
2005 2072 1.247567 CGTGTTTTCCCTTGCAGGAT 58.752 50.000 0.00 0.00 37.67 3.24
2006 2073 1.613437 CGTGTTTTCCCTTGCAGGATT 59.387 47.619 0.00 0.00 37.67 3.01
2040 2107 4.599047 TCATTTTGGTTGTCCATGTTCC 57.401 40.909 0.00 0.00 43.91 3.62
2262 2329 1.959282 CCCTTGGCCTCTGCATAAATC 59.041 52.381 3.32 0.00 40.13 2.17
2263 2330 2.423947 CCCTTGGCCTCTGCATAAATCT 60.424 50.000 3.32 0.00 40.13 2.40
2326 2393 9.325198 GGATATGTCTTTTGTTTGGAAAAAGTT 57.675 29.630 8.12 0.21 42.59 2.66
2506 2573 0.308993 AGCTGCTTCACTTGAAACGC 59.691 50.000 0.00 0.00 33.07 4.84
2525 2592 2.651455 GCCCAATACTTAACCACTCCC 58.349 52.381 0.00 0.00 0.00 4.30
2547 2614 5.527582 CCCTAGTCATTGTTATTACTGCCAC 59.472 44.000 0.00 0.00 0.00 5.01
2557 2624 2.051334 TTACTGCCACAGCACAAAGT 57.949 45.000 0.00 0.00 46.52 2.66
2582 2649 7.168135 GTCAGTTTATTTCTTCACAAGGCAAAG 59.832 37.037 0.00 0.00 0.00 2.77
2584 2651 5.789643 TTATTTCTTCACAAGGCAAAGCT 57.210 34.783 0.00 0.00 0.00 3.74
2603 2670 5.301835 AGCTATGAGCCACACTTATTCAT 57.698 39.130 0.00 0.00 43.77 2.57
2728 2796 7.175467 ACTTGTCATGAAGTTAATGATCTGCAA 59.825 33.333 6.18 5.28 36.49 4.08
2786 2854 5.011635 TGCCTTTACTGTAGAGATGTTGTCA 59.988 40.000 6.92 0.00 0.00 3.58
2829 2897 5.050295 GCCTGTTTACTGTTAGAACTGTCAC 60.050 44.000 8.04 7.61 40.76 3.67
2846 2917 5.237344 ACTGTCACTATGAAGTTTCTTGTGC 59.763 40.000 0.00 0.00 31.97 4.57
2878 2949 3.805422 TGTACGTTTAGGAGTGCTGTTTG 59.195 43.478 0.00 0.00 0.00 2.93
2932 3003 5.942236 ACCAGATATAGGCATGTAAGCATTG 59.058 40.000 0.00 0.00 35.83 2.82
2976 3047 4.100653 TGCACATTTCAATTTCAGGGTTGA 59.899 37.500 0.00 0.00 32.86 3.18
3071 3142 1.733389 CGTGAAACAGCAATGGCCATC 60.733 52.381 21.08 7.62 42.56 3.51
3086 3157 0.108207 CCATCAGGCATGAGGAGGAC 59.892 60.000 15.44 0.00 39.62 3.85
3116 3188 6.291377 TGTGGTTTATTTTGCAAGGCATTAA 58.709 32.000 0.00 0.00 38.76 1.40
3117 3189 6.939163 TGTGGTTTATTTTGCAAGGCATTAAT 59.061 30.769 0.00 0.00 38.76 1.40
3161 3233 9.696917 AAGTATTATTTTGCAAGGCATTATAGC 57.303 29.630 0.00 0.00 38.76 2.97
3162 3234 9.082313 AGTATTATTTTGCAAGGCATTATAGCT 57.918 29.630 0.00 0.00 38.76 3.32
3163 3235 9.696917 GTATTATTTTGCAAGGCATTATAGCTT 57.303 29.630 0.00 0.00 38.76 3.74
3164 3236 8.597662 ATTATTTTGCAAGGCATTATAGCTTG 57.402 30.769 0.00 0.00 38.76 4.01
3165 3237 5.657826 TTTTGCAAGGCATTATAGCTTGA 57.342 34.783 0.00 0.00 38.76 3.02
3166 3238 5.657826 TTTGCAAGGCATTATAGCTTGAA 57.342 34.783 0.00 0.00 38.76 2.69
3167 3239 5.657826 TTGCAAGGCATTATAGCTTGAAA 57.342 34.783 0.00 0.00 38.76 2.69
3168 3240 5.657826 TGCAAGGCATTATAGCTTGAAAA 57.342 34.783 0.00 0.00 31.71 2.29
3169 3241 6.035368 TGCAAGGCATTATAGCTTGAAAAA 57.965 33.333 0.00 0.00 31.71 1.94
3170 3242 6.642430 TGCAAGGCATTATAGCTTGAAAAAT 58.358 32.000 0.00 0.00 31.71 1.82
3171 3243 7.780064 TGCAAGGCATTATAGCTTGAAAAATA 58.220 30.769 0.00 0.00 31.71 1.40
3172 3244 8.256605 TGCAAGGCATTATAGCTTGAAAAATAA 58.743 29.630 0.00 0.00 31.71 1.40
3173 3245 9.264719 GCAAGGCATTATAGCTTGAAAAATAAT 57.735 29.630 0.00 0.00 34.17 1.28
3203 3275 5.021458 TGTTTAATCTTACTCCCTCCGTCT 58.979 41.667 0.00 0.00 0.00 4.18
3204 3276 5.105473 TGTTTAATCTTACTCCCTCCGTCTG 60.105 44.000 0.00 0.00 0.00 3.51
3261 3333 8.840321 AGCTTGCAAAACGATCTTATATTATGT 58.160 29.630 0.00 0.00 0.00 2.29
3271 3343 5.995565 TCTTATATTATGTGACGGAGGGG 57.004 43.478 0.00 0.00 0.00 4.79
3431 3503 7.387122 GTGATGCATAAGATCTGAGAATAAGCA 59.613 37.037 0.00 0.00 0.00 3.91
3465 3537 9.219603 TGAGCTAACATAATATGAGGCAATAAC 57.780 33.333 7.33 1.43 0.00 1.89
3596 3668 6.153510 TGGCACATTTACTTGCATTGGTTATA 59.846 34.615 0.00 0.00 40.75 0.98
3675 3747 1.375523 GTCACCTCCATTCCGCGTT 60.376 57.895 4.92 0.00 0.00 4.84
3711 3783 2.109425 ATGAAAACAGGCGGGAGTAC 57.891 50.000 0.00 0.00 0.00 2.73
3846 3918 4.687215 GCGGAGGAGCACTGCACA 62.687 66.667 3.30 0.00 37.39 4.57
3906 3978 0.963962 CAAGTGGTGGCTGCTGAAAT 59.036 50.000 0.00 0.00 0.00 2.17
3909 3981 2.440409 AGTGGTGGCTGCTGAAATAAG 58.560 47.619 0.00 0.00 0.00 1.73
3914 3986 2.094545 GTGGCTGCTGAAATAAGGGTTG 60.095 50.000 0.00 0.00 0.00 3.77
3916 3988 1.821136 GCTGCTGAAATAAGGGTTGCT 59.179 47.619 0.00 0.00 0.00 3.91
3962 4034 5.247564 GGTACCCCTGCATATACAGATACAA 59.752 44.000 4.39 0.00 40.25 2.41
3964 4036 4.287067 ACCCCTGCATATACAGATACAAGG 59.713 45.833 4.39 0.00 40.25 3.61
3965 4037 4.256920 CCCTGCATATACAGATACAAGGC 58.743 47.826 4.39 0.00 40.25 4.35
3966 4038 3.928992 CCTGCATATACAGATACAAGGCG 59.071 47.826 4.39 0.00 40.25 5.52
3967 4039 4.560128 CTGCATATACAGATACAAGGCGT 58.440 43.478 0.00 0.00 40.25 5.68
4138 4219 1.305219 CGACCAATGTGGCCGATGTT 61.305 55.000 0.00 0.00 46.71 2.71
4167 4248 8.630091 ACCCTATATGTCCACTAATATAGACCA 58.370 37.037 10.04 0.00 39.90 4.02
4215 4296 7.730364 TTCCAGAGAACAGTGAAAATAAGAC 57.270 36.000 0.00 0.00 0.00 3.01
4236 4317 8.539770 AAGACTATGTATTCACAACTTCACTG 57.460 34.615 0.00 0.00 38.42 3.66
4374 4504 8.873830 TCTCATCTAATTTCTTCATTGTTCGAC 58.126 33.333 0.00 0.00 0.00 4.20
4383 4513 6.880822 TCTTCATTGTTCGACTTATAACGG 57.119 37.500 0.00 0.00 0.00 4.44
4411 4541 1.256117 CGTGCTTTTTCTTTGTGCTGC 59.744 47.619 0.00 0.00 0.00 5.25
4443 4601 3.916761 TGTGCTCGTATCGTTTTACCTT 58.083 40.909 0.00 0.00 0.00 3.50
4478 4636 8.649973 TTTGCCACGTTTGTATTTCTTTTTAT 57.350 26.923 0.00 0.00 0.00 1.40
4492 4650 2.442212 TTTTATCTGACCACGCACGA 57.558 45.000 0.00 0.00 0.00 4.35
4540 4703 6.706295 AGAGAACAGAGTAAAAAGGAGATGG 58.294 40.000 0.00 0.00 0.00 3.51
4558 4722 2.532843 TGGGAAAGCCTACTCGTTAGT 58.467 47.619 0.00 0.00 39.91 2.24
4605 4769 2.067766 CCAACGCCATTTTTGTGATGG 58.932 47.619 0.00 0.00 45.52 3.51
4612 4776 2.616001 CCATTTTTGTGATGGGGGCTTG 60.616 50.000 0.00 0.00 40.30 4.01
4680 4845 9.778741 TTCAACAGCTTTATATATAACTCAGGG 57.221 33.333 4.61 0.00 0.00 4.45
4681 4846 9.154632 TCAACAGCTTTATATATAACTCAGGGA 57.845 33.333 4.61 0.00 0.00 4.20
4682 4847 9.950496 CAACAGCTTTATATATAACTCAGGGAT 57.050 33.333 4.61 0.00 0.00 3.85
4703 4868 6.095440 GGGATATTACAAATTCTGTGCACTGT 59.905 38.462 19.41 14.80 39.20 3.55
4710 4875 3.961480 ATTCTGTGCACTGTAGCTGTA 57.039 42.857 19.41 0.00 34.99 2.74
4719 4884 3.611057 GCACTGTAGCTGTACGTGTAACT 60.611 47.826 0.00 0.00 36.69 2.24
4720 4885 4.543692 CACTGTAGCTGTACGTGTAACTT 58.456 43.478 0.00 0.00 33.09 2.66
4750 4915 5.701290 ACATAAACTTGTCTGGTCTAGTTGC 59.299 40.000 0.00 0.00 34.73 4.17
4761 4926 6.595716 GTCTGGTCTAGTTGCATGTCTATTTT 59.404 38.462 0.00 0.00 0.00 1.82
4762 4927 6.818644 TCTGGTCTAGTTGCATGTCTATTTTC 59.181 38.462 0.00 0.00 0.00 2.29
4775 4942 8.175069 GCATGTCTATTTTCGACACAGATTTAA 58.825 33.333 0.00 0.00 43.44 1.52
4777 4944 8.025243 TGTCTATTTTCGACACAGATTTAACC 57.975 34.615 0.00 0.00 36.54 2.85
4778 4945 7.148705 TGTCTATTTTCGACACAGATTTAACCG 60.149 37.037 0.00 0.00 36.54 4.44
4791 4958 6.875195 ACAGATTTAACCGGTCTCGAATTTAA 59.125 34.615 8.04 0.00 39.00 1.52
4814 4981 7.891183 AATTTCATGTCTATCCTACATACGC 57.109 36.000 0.00 0.00 35.82 4.42
4815 4982 6.399639 TTTCATGTCTATCCTACATACGCA 57.600 37.500 0.00 0.00 35.82 5.24
4816 4983 6.399639 TTCATGTCTATCCTACATACGCAA 57.600 37.500 0.00 0.00 35.82 4.85
4817 4984 5.769367 TCATGTCTATCCTACATACGCAAC 58.231 41.667 0.00 0.00 35.82 4.17
4818 4985 5.535030 TCATGTCTATCCTACATACGCAACT 59.465 40.000 0.00 0.00 35.82 3.16
4819 4986 5.847111 TGTCTATCCTACATACGCAACTT 57.153 39.130 0.00 0.00 0.00 2.66
4820 4987 5.588240 TGTCTATCCTACATACGCAACTTG 58.412 41.667 0.00 0.00 0.00 3.16
4821 4988 5.126545 TGTCTATCCTACATACGCAACTTGT 59.873 40.000 0.00 0.00 0.00 3.16
4822 4989 5.686397 GTCTATCCTACATACGCAACTTGTC 59.314 44.000 0.00 0.00 0.00 3.18
4823 4990 3.241067 TCCTACATACGCAACTTGTCC 57.759 47.619 0.00 0.00 0.00 4.02
4824 4991 2.563620 TCCTACATACGCAACTTGTCCA 59.436 45.455 0.00 0.00 0.00 4.02
4825 4992 3.007074 TCCTACATACGCAACTTGTCCAA 59.993 43.478 0.00 0.00 0.00 3.53
4826 4993 3.124636 CCTACATACGCAACTTGTCCAAC 59.875 47.826 0.00 0.00 0.00 3.77
4827 4994 1.877443 ACATACGCAACTTGTCCAACC 59.123 47.619 0.00 0.00 0.00 3.77
4828 4995 1.199097 CATACGCAACTTGTCCAACCC 59.801 52.381 0.00 0.00 0.00 4.11
4829 4996 0.470766 TACGCAACTTGTCCAACCCT 59.529 50.000 0.00 0.00 0.00 4.34
4830 4997 0.470766 ACGCAACTTGTCCAACCCTA 59.529 50.000 0.00 0.00 0.00 3.53
4831 4998 1.134037 ACGCAACTTGTCCAACCCTAA 60.134 47.619 0.00 0.00 0.00 2.69
4832 4999 1.265905 CGCAACTTGTCCAACCCTAAC 59.734 52.381 0.00 0.00 0.00 2.34
4833 5000 2.583143 GCAACTTGTCCAACCCTAACT 58.417 47.619 0.00 0.00 0.00 2.24
4834 5001 2.552743 GCAACTTGTCCAACCCTAACTC 59.447 50.000 0.00 0.00 0.00 3.01
4835 5002 3.815809 CAACTTGTCCAACCCTAACTCA 58.184 45.455 0.00 0.00 0.00 3.41
4836 5003 3.771577 ACTTGTCCAACCCTAACTCAG 57.228 47.619 0.00 0.00 0.00 3.35
4837 5004 3.046374 ACTTGTCCAACCCTAACTCAGT 58.954 45.455 0.00 0.00 0.00 3.41
4838 5005 3.458487 ACTTGTCCAACCCTAACTCAGTT 59.542 43.478 0.00 0.00 0.00 3.16
4839 5006 3.485463 TGTCCAACCCTAACTCAGTTG 57.515 47.619 0.00 0.00 40.42 3.16
4840 5007 2.152016 GTCCAACCCTAACTCAGTTGC 58.848 52.381 0.00 0.00 39.61 4.17
4841 5008 1.771854 TCCAACCCTAACTCAGTTGCA 59.228 47.619 0.00 0.00 39.61 4.08
4842 5009 2.375174 TCCAACCCTAACTCAGTTGCAT 59.625 45.455 0.00 0.00 39.61 3.96
4843 5010 2.489329 CCAACCCTAACTCAGTTGCATG 59.511 50.000 0.00 0.00 39.61 4.06
4844 5011 3.149196 CAACCCTAACTCAGTTGCATGT 58.851 45.455 0.00 0.00 34.98 3.21
4845 5012 3.059352 ACCCTAACTCAGTTGCATGTC 57.941 47.619 0.00 0.00 0.00 3.06
4846 5013 2.290323 ACCCTAACTCAGTTGCATGTCC 60.290 50.000 0.00 0.00 0.00 4.02
4847 5014 2.290260 CCCTAACTCAGTTGCATGTCCA 60.290 50.000 0.00 0.00 0.00 4.02
4848 5015 2.744202 CCTAACTCAGTTGCATGTCCAC 59.256 50.000 0.00 0.00 0.00 4.02
4849 5016 1.609208 AACTCAGTTGCATGTCCACC 58.391 50.000 0.00 0.00 0.00 4.61
4850 5017 0.767375 ACTCAGTTGCATGTCCACCT 59.233 50.000 0.00 0.00 0.00 4.00
4851 5018 1.143684 ACTCAGTTGCATGTCCACCTT 59.856 47.619 0.00 0.00 0.00 3.50
4852 5019 2.233271 CTCAGTTGCATGTCCACCTTT 58.767 47.619 0.00 0.00 0.00 3.11
4853 5020 1.955778 TCAGTTGCATGTCCACCTTTG 59.044 47.619 0.00 0.00 0.00 2.77
4854 5021 1.955778 CAGTTGCATGTCCACCTTTGA 59.044 47.619 0.00 0.00 0.00 2.69
4855 5022 2.559668 CAGTTGCATGTCCACCTTTGAT 59.440 45.455 0.00 0.00 0.00 2.57
4856 5023 3.758023 CAGTTGCATGTCCACCTTTGATA 59.242 43.478 0.00 0.00 0.00 2.15
4857 5024 3.758554 AGTTGCATGTCCACCTTTGATAC 59.241 43.478 0.00 0.00 0.00 2.24
4858 5025 3.431673 TGCATGTCCACCTTTGATACA 57.568 42.857 0.00 0.00 0.00 2.29
4859 5026 3.081061 TGCATGTCCACCTTTGATACAC 58.919 45.455 0.00 0.00 0.00 2.90
4860 5027 3.081061 GCATGTCCACCTTTGATACACA 58.919 45.455 0.00 0.00 0.00 3.72
4861 5028 3.505680 GCATGTCCACCTTTGATACACAA 59.494 43.478 0.00 0.00 36.65 3.33
4862 5029 4.158394 GCATGTCCACCTTTGATACACAAT 59.842 41.667 0.00 0.00 38.36 2.71
4863 5030 5.336690 GCATGTCCACCTTTGATACACAATT 60.337 40.000 0.00 0.00 38.36 2.32
4864 5031 6.690530 CATGTCCACCTTTGATACACAATTT 58.309 36.000 0.00 0.00 38.36 1.82
4865 5032 6.083098 TGTCCACCTTTGATACACAATTTG 57.917 37.500 0.00 0.00 38.36 2.32
4866 5033 5.596361 TGTCCACCTTTGATACACAATTTGT 59.404 36.000 0.00 0.00 42.84 2.83
4877 5044 3.476295 CACAATTTGTGTCCATCCTCG 57.524 47.619 19.25 0.00 43.08 4.63
4878 5045 3.073678 CACAATTTGTGTCCATCCTCGA 58.926 45.455 19.25 0.00 43.08 4.04
4879 5046 3.691118 CACAATTTGTGTCCATCCTCGAT 59.309 43.478 19.25 0.00 43.08 3.59
4880 5047 4.875536 CACAATTTGTGTCCATCCTCGATA 59.124 41.667 19.25 0.00 43.08 2.92
4881 5048 4.876107 ACAATTTGTGTCCATCCTCGATAC 59.124 41.667 0.15 0.00 34.38 2.24
4882 5049 2.863401 TTGTGTCCATCCTCGATACG 57.137 50.000 0.00 0.00 0.00 3.06
4883 5050 2.047002 TGTGTCCATCCTCGATACGA 57.953 50.000 0.00 0.00 0.00 3.43
4884 5051 2.371306 TGTGTCCATCCTCGATACGAA 58.629 47.619 0.00 0.00 34.74 3.85
4885 5052 2.756207 TGTGTCCATCCTCGATACGAAA 59.244 45.455 0.00 0.00 34.74 3.46
4886 5053 3.114065 GTGTCCATCCTCGATACGAAAC 58.886 50.000 0.00 0.00 34.74 2.78
4887 5054 3.021695 TGTCCATCCTCGATACGAAACT 58.978 45.455 0.00 0.00 34.74 2.66
4888 5055 3.446161 TGTCCATCCTCGATACGAAACTT 59.554 43.478 0.00 0.00 34.74 2.66
4889 5056 3.797256 GTCCATCCTCGATACGAAACTTG 59.203 47.826 0.00 0.00 34.74 3.16
4890 5057 2.540101 CCATCCTCGATACGAAACTTGC 59.460 50.000 0.00 0.00 34.74 4.01
4891 5058 2.288961 TCCTCGATACGAAACTTGCC 57.711 50.000 0.00 0.00 34.74 4.52
4892 5059 1.822990 TCCTCGATACGAAACTTGCCT 59.177 47.619 0.00 0.00 34.74 4.75
4893 5060 1.927174 CCTCGATACGAAACTTGCCTG 59.073 52.381 0.00 0.00 34.74 4.85
4894 5061 2.416836 CCTCGATACGAAACTTGCCTGA 60.417 50.000 0.00 0.00 34.74 3.86
4895 5062 2.599082 CTCGATACGAAACTTGCCTGAC 59.401 50.000 0.00 0.00 34.74 3.51
4896 5063 1.659098 CGATACGAAACTTGCCTGACC 59.341 52.381 0.00 0.00 0.00 4.02
4897 5064 2.007608 GATACGAAACTTGCCTGACCC 58.992 52.381 0.00 0.00 0.00 4.46
4898 5065 0.035739 TACGAAACTTGCCTGACCCC 59.964 55.000 0.00 0.00 0.00 4.95
4899 5066 1.073199 CGAAACTTGCCTGACCCCT 59.927 57.895 0.00 0.00 0.00 4.79
4900 5067 1.237285 CGAAACTTGCCTGACCCCTG 61.237 60.000 0.00 0.00 0.00 4.45
4901 5068 0.110486 GAAACTTGCCTGACCCCTGA 59.890 55.000 0.00 0.00 0.00 3.86
4902 5069 0.178990 AAACTTGCCTGACCCCTGAC 60.179 55.000 0.00 0.00 0.00 3.51
4903 5070 2.069165 AACTTGCCTGACCCCTGACC 62.069 60.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.006027 GGTGTACGTAAAAGTAGACATCAAAAC 58.994 37.037 0.00 0.00 41.09 2.43
248 251 7.681939 ACGCCTTAGACATCAAAAGATTAAA 57.318 32.000 0.00 0.00 0.00 1.52
251 254 6.206634 TGAAACGCCTTAGACATCAAAAGATT 59.793 34.615 0.00 0.00 0.00 2.40
252 255 5.705441 TGAAACGCCTTAGACATCAAAAGAT 59.295 36.000 0.00 0.00 0.00 2.40
254 257 5.356882 TGAAACGCCTTAGACATCAAAAG 57.643 39.130 0.00 0.00 0.00 2.27
267 270 4.320023 TGTACAATGTGTATGAAACGCCT 58.680 39.130 0.00 0.00 37.84 5.52
268 271 4.671880 TGTACAATGTGTATGAAACGCC 57.328 40.909 0.00 0.00 37.84 5.68
269 272 6.248420 GTGAATGTACAATGTGTATGAAACGC 59.752 38.462 0.00 0.00 35.05 4.84
270 273 7.294473 TGTGAATGTACAATGTGTATGAAACG 58.706 34.615 0.00 0.00 35.05 3.60
287 290 7.224297 AGAAAGTACAAGGTGTATGTGAATGT 58.776 34.615 0.00 0.00 35.05 2.71
288 291 7.672983 AGAAAGTACAAGGTGTATGTGAATG 57.327 36.000 0.00 0.00 35.05 2.67
321 325 7.851228 AGACATCTATACACAAATGTTCCTGA 58.149 34.615 0.00 0.00 40.48 3.86
394 408 7.095397 CGAACAGTGTAAAACATGTATGAGGAA 60.095 37.037 0.00 0.00 0.00 3.36
396 410 6.147164 ACGAACAGTGTAAAACATGTATGAGG 59.853 38.462 0.00 0.00 0.00 3.86
397 411 7.009440 CACGAACAGTGTAAAACATGTATGAG 58.991 38.462 0.00 0.00 45.51 2.90
415 429 6.537301 AGAATTGTTTCTAGTGAACACGAACA 59.463 34.615 12.00 11.64 40.47 3.18
416 430 6.945072 AGAATTGTTTCTAGTGAACACGAAC 58.055 36.000 12.00 4.98 40.47 3.95
419 433 7.594824 CAAAGAATTGTTTCTAGTGAACACG 57.405 36.000 12.00 0.00 41.42 4.49
443 457 9.202273 TGCATTTGAAAAATGTTAACCATCTAC 57.798 29.630 12.82 0.00 31.75 2.59
444 458 9.941325 ATGCATTTGAAAAATGTTAACCATCTA 57.059 25.926 12.82 0.00 31.75 1.98
446 460 8.719648 TCATGCATTTGAAAAATGTTAACCATC 58.280 29.630 12.82 0.00 31.75 3.51
515 529 9.327628 CGGACGGAGGGAGTATATATATATATG 57.672 40.741 20.93 7.22 31.69 1.78
523 537 4.371624 TTTCGGACGGAGGGAGTATATA 57.628 45.455 0.00 0.00 0.00 0.86
524 538 2.965671 TTCGGACGGAGGGAGTATAT 57.034 50.000 0.00 0.00 0.00 0.86
525 539 2.734755 TTTCGGACGGAGGGAGTATA 57.265 50.000 0.00 0.00 0.00 1.47
526 540 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
527 541 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
528 542 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
585 599 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
592 606 9.268282 GGATAAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
593 607 7.739444 TGGATAAAAGGGGATGTATCTAGATGT 59.261 37.037 15.79 1.25 0.00 3.06
594 608 8.150827 TGGATAAAAGGGGATGTATCTAGATG 57.849 38.462 15.79 0.00 0.00 2.90
595 609 8.940012 ATGGATAAAAGGGGATGTATCTAGAT 57.060 34.615 10.73 10.73 0.00 1.98
596 610 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
597 611 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
598 612 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
599 613 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
600 614 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
601 615 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
602 616 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
603 617 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
604 618 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
605 619 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
606 620 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
607 621 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
608 622 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
614 628 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
615 629 7.122650 ACGGAAATACTTGTCATCAAAATGGAT 59.877 33.333 0.00 0.00 33.42 3.41
616 630 6.432783 ACGGAAATACTTGTCATCAAAATGGA 59.567 34.615 0.00 0.00 33.42 3.41
617 631 6.620678 ACGGAAATACTTGTCATCAAAATGG 58.379 36.000 0.00 0.00 33.42 3.16
618 632 7.425309 CGTACGGAAATACTTGTCATCAAAATG 59.575 37.037 7.57 0.00 32.87 2.32
619 633 7.413657 CCGTACGGAAATACTTGTCATCAAAAT 60.414 37.037 30.64 0.00 37.50 1.82
620 634 6.128499 CCGTACGGAAATACTTGTCATCAAAA 60.128 38.462 30.64 0.00 37.50 2.44
621 635 5.349270 CCGTACGGAAATACTTGTCATCAAA 59.651 40.000 30.64 0.00 37.50 2.69
622 636 4.865925 CCGTACGGAAATACTTGTCATCAA 59.134 41.667 30.64 0.00 37.50 2.57
623 637 4.158209 TCCGTACGGAAATACTTGTCATCA 59.842 41.667 33.96 5.78 42.05 3.07
624 638 4.675510 TCCGTACGGAAATACTTGTCATC 58.324 43.478 33.96 0.00 42.05 2.92
625 639 4.441079 CCTCCGTACGGAAATACTTGTCAT 60.441 45.833 34.77 0.00 44.66 3.06
626 640 3.119388 CCTCCGTACGGAAATACTTGTCA 60.119 47.826 34.77 10.83 44.66 3.58
627 641 3.442100 CCTCCGTACGGAAATACTTGTC 58.558 50.000 34.77 0.00 44.66 3.18
628 642 2.167075 CCCTCCGTACGGAAATACTTGT 59.833 50.000 34.77 0.00 44.66 3.16
629 643 2.428171 TCCCTCCGTACGGAAATACTTG 59.572 50.000 34.77 21.77 44.66 3.16
630 644 2.692041 CTCCCTCCGTACGGAAATACTT 59.308 50.000 34.77 0.00 44.66 2.24
631 645 2.305009 CTCCCTCCGTACGGAAATACT 58.695 52.381 34.77 0.00 44.66 2.12
632 646 2.027385 ACTCCCTCCGTACGGAAATAC 58.973 52.381 34.77 0.00 44.66 1.89
633 647 2.442236 ACTCCCTCCGTACGGAAATA 57.558 50.000 34.77 21.70 44.66 1.40
634 648 2.442236 TACTCCCTCCGTACGGAAAT 57.558 50.000 34.77 20.78 44.66 2.17
635 649 2.442236 ATACTCCCTCCGTACGGAAA 57.558 50.000 34.77 22.33 44.66 3.13
636 650 3.795688 ATATACTCCCTCCGTACGGAA 57.204 47.619 34.77 21.13 44.66 4.30
637 651 5.441718 AATATATACTCCCTCCGTACGGA 57.558 43.478 33.55 33.55 42.90 4.69
638 652 7.814264 ATAAATATATACTCCCTCCGTACGG 57.186 40.000 28.66 28.66 0.00 4.02
691 705 9.399025 CCGTTTTACGTTGTTTTCTTTATTTTG 57.601 29.630 0.00 0.00 40.58 2.44
722 736 3.560896 AGCGCTCGTTTTACCACTAAAAA 59.439 39.130 2.64 0.00 34.33 1.94
723 737 3.132925 AGCGCTCGTTTTACCACTAAAA 58.867 40.909 2.64 0.00 30.72 1.52
724 738 2.758009 AGCGCTCGTTTTACCACTAAA 58.242 42.857 2.64 0.00 0.00 1.85
725 739 2.443887 AGCGCTCGTTTTACCACTAA 57.556 45.000 2.64 0.00 0.00 2.24
728 742 2.159747 CCTTAAGCGCTCGTTTTACCAC 60.160 50.000 12.06 0.00 0.00 4.16
730 744 1.201998 GCCTTAAGCGCTCGTTTTACC 60.202 52.381 12.06 0.00 0.00 2.85
731 745 1.201998 GGCCTTAAGCGCTCGTTTTAC 60.202 52.381 12.06 0.00 45.17 2.01
732 746 1.081094 GGCCTTAAGCGCTCGTTTTA 58.919 50.000 12.06 0.00 45.17 1.52
733 747 1.873863 GGCCTTAAGCGCTCGTTTT 59.126 52.632 12.06 0.00 45.17 2.43
764 778 2.753043 AGCTTGCCAATGAGCCGG 60.753 61.111 0.00 0.00 39.71 6.13
765 779 2.768492 GGAGCTTGCCAATGAGCCG 61.768 63.158 0.00 0.00 39.71 5.52
767 781 1.020437 GTAGGAGCTTGCCAATGAGC 58.980 55.000 0.00 0.00 39.17 4.26
768 782 2.286872 CAGTAGGAGCTTGCCAATGAG 58.713 52.381 0.00 0.00 0.00 2.90
769 783 1.679944 GCAGTAGGAGCTTGCCAATGA 60.680 52.381 0.00 0.00 0.00 2.57
770 784 0.737219 GCAGTAGGAGCTTGCCAATG 59.263 55.000 0.00 0.00 0.00 2.82
771 785 0.394899 GGCAGTAGGAGCTTGCCAAT 60.395 55.000 19.32 0.00 44.42 3.16
772 786 1.002134 GGCAGTAGGAGCTTGCCAA 60.002 57.895 19.32 0.00 44.42 4.52
774 788 1.153269 GAGGCAGTAGGAGCTTGCC 60.153 63.158 17.05 17.05 45.30 4.52
775 789 0.742635 GTGAGGCAGTAGGAGCTTGC 60.743 60.000 0.00 0.00 0.00 4.01
776 790 0.610174 TGTGAGGCAGTAGGAGCTTG 59.390 55.000 0.00 0.00 0.00 4.01
777 791 0.901124 CTGTGAGGCAGTAGGAGCTT 59.099 55.000 0.00 0.00 40.27 3.74
778 792 1.612395 GCTGTGAGGCAGTAGGAGCT 61.612 60.000 0.00 0.00 46.64 4.09
779 793 1.153469 GCTGTGAGGCAGTAGGAGC 60.153 63.158 0.00 0.00 46.64 4.70
780 794 0.975040 AGGCTGTGAGGCAGTAGGAG 60.975 60.000 0.00 0.00 46.64 3.69
781 795 0.972983 GAGGCTGTGAGGCAGTAGGA 60.973 60.000 0.00 0.00 46.64 2.94
782 796 1.260538 TGAGGCTGTGAGGCAGTAGG 61.261 60.000 0.00 0.00 46.64 3.18
783 797 0.108424 GTGAGGCTGTGAGGCAGTAG 60.108 60.000 0.00 0.00 46.64 2.57
784 798 0.831711 TGTGAGGCTGTGAGGCAGTA 60.832 55.000 0.00 0.00 46.64 2.74
785 799 2.109517 CTGTGAGGCTGTGAGGCAGT 62.110 60.000 0.00 0.00 46.64 4.40
786 800 1.375652 CTGTGAGGCTGTGAGGCAG 60.376 63.158 0.00 0.00 44.19 4.85
787 801 2.745698 CTGTGAGGCTGTGAGGCA 59.254 61.111 0.00 0.00 44.19 4.75
788 802 2.046507 CCTGTGAGGCTGTGAGGC 60.047 66.667 0.00 0.00 41.73 4.70
805 819 1.398390 GAATGATCGGTTGGTGTGAGC 59.602 52.381 0.00 0.00 0.00 4.26
819 833 5.045724 GGAGGAGATAATGCAGGAGAATGAT 60.046 44.000 0.00 0.00 0.00 2.45
820 834 4.285517 GGAGGAGATAATGCAGGAGAATGA 59.714 45.833 0.00 0.00 0.00 2.57
980 998 4.896829 CGGAGGAGAGGCCGGCTA 62.897 72.222 28.56 0.00 43.67 3.93
988 1006 1.006337 GCAGCATAGCGGAGGAGAG 60.006 63.158 0.00 0.00 0.00 3.20
989 1007 2.502492 GGCAGCATAGCGGAGGAGA 61.502 63.158 0.00 0.00 34.64 3.71
990 1008 2.030262 GGCAGCATAGCGGAGGAG 59.970 66.667 0.00 0.00 34.64 3.69
991 1009 2.763710 TGGCAGCATAGCGGAGGA 60.764 61.111 0.00 0.00 34.64 3.71
1093 1120 0.323087 AAATAAAGAGGGGCGCGGTT 60.323 50.000 8.83 0.00 0.00 4.44
1130 1160 2.622470 GGGTTGTACCTGCCGTTAAAAA 59.378 45.455 0.00 0.00 38.64 1.94
1137 1167 1.375523 GTGAGGGTTGTACCTGCCG 60.376 63.158 0.00 0.00 42.10 5.69
1140 1170 2.494059 CAAGTGTGAGGGTTGTACCTG 58.506 52.381 0.00 0.00 42.10 4.00
1141 1171 1.420138 CCAAGTGTGAGGGTTGTACCT 59.580 52.381 0.00 0.00 45.57 3.08
1142 1172 1.892209 CCAAGTGTGAGGGTTGTACC 58.108 55.000 0.00 0.00 37.60 3.34
1145 1175 1.525995 CGCCAAGTGTGAGGGTTGT 60.526 57.895 0.00 0.00 0.00 3.32
1146 1176 2.260869 CCGCCAAGTGTGAGGGTTG 61.261 63.158 0.00 0.00 0.00 3.77
1147 1177 1.779061 ATCCGCCAAGTGTGAGGGTT 61.779 55.000 0.00 0.00 0.00 4.11
1148 1178 0.907704 TATCCGCCAAGTGTGAGGGT 60.908 55.000 0.00 0.00 0.00 4.34
1173 1216 5.318630 TCTACAACAGAAACCCCAATTACC 58.681 41.667 0.00 0.00 0.00 2.85
1179 1229 1.771854 TGCTCTACAACAGAAACCCCA 59.228 47.619 0.00 0.00 31.12 4.96
1278 1328 3.471495 AAAGTGATGCCGAAAATCGAC 57.529 42.857 0.58 0.00 43.74 4.20
1310 1360 2.418368 TTATGGCCAAATCTCGCAGT 57.582 45.000 10.96 0.00 0.00 4.40
1359 1412 5.023533 TCTCCCTATTGACAATACAGCAC 57.976 43.478 3.68 0.00 0.00 4.40
1367 1420 3.491766 ACCCTCTCTCCCTATTGACAA 57.508 47.619 0.00 0.00 0.00 3.18
1378 1431 2.232696 GGAACAGAGTGAACCCTCTCTC 59.767 54.545 0.00 0.00 40.23 3.20
1399 1453 2.212652 TGCAGACAACAACAGCTACTG 58.787 47.619 0.00 0.00 37.52 2.74
1401 1455 2.957576 CTGCAGACAACAACAGCTAC 57.042 50.000 8.42 0.00 0.00 3.58
1489 1545 7.461938 GCAGCAATTTAATCATTCGAGTGTTTC 60.462 37.037 7.87 0.00 0.00 2.78
1495 1551 5.008415 AGGAGCAGCAATTTAATCATTCGAG 59.992 40.000 0.00 0.00 0.00 4.04
1555 1611 5.964958 TTGGCAAAGAGAAAATAGAGTGG 57.035 39.130 0.00 0.00 0.00 4.00
1556 1612 9.912634 TTTATTTGGCAAAGAGAAAATAGAGTG 57.087 29.630 18.61 0.00 0.00 3.51
1580 1636 2.167487 ACTTGGGCAAACATTGACGTTT 59.833 40.909 0.00 0.00 40.53 3.60
1587 1651 4.762251 GTCTAGAAGACTTGGGCAAACATT 59.238 41.667 0.00 0.00 41.88 2.71
1642 1707 5.382618 AGACTTGCTTCACATTTGGAATC 57.617 39.130 0.00 0.00 0.00 2.52
1656 1721 4.406003 ACCAATAAGATACCGAGACTTGCT 59.594 41.667 0.00 0.00 0.00 3.91
1682 1747 8.352942 GGTCTGTTGAATTTCAAGTATTCAGTT 58.647 33.333 12.02 0.00 41.53 3.16
1730 1795 9.357652 GACGAGTACCAAAAATACAGTACATAA 57.642 33.333 0.00 0.00 38.01 1.90
1739 1804 5.476614 AGAGTGGACGAGTACCAAAAATAC 58.523 41.667 0.00 0.00 39.22 1.89
2040 2107 7.824289 TCTGTAGAAAGAACATGTATTTCCTGG 59.176 37.037 23.07 15.12 34.23 4.45
2472 2539 1.757118 GCAGCTCACACCACTAGGATA 59.243 52.381 0.00 0.00 38.69 2.59
2506 2573 4.720273 ACTAGGGAGTGGTTAAGTATTGGG 59.280 45.833 0.00 0.00 33.41 4.12
2525 2592 6.238211 GCTGTGGCAGTAATAACAATGACTAG 60.238 42.308 0.00 0.00 38.54 2.57
2547 2614 7.166473 GTGAAGAAATAAACTGACTTTGTGCTG 59.834 37.037 0.00 0.00 0.00 4.41
2557 2624 6.707440 TTGCCTTGTGAAGAAATAAACTGA 57.293 33.333 0.00 0.00 0.00 3.41
2582 2649 6.718454 CTATGAATAAGTGTGGCTCATAGC 57.282 41.667 4.87 0.00 39.16 2.97
2584 2651 6.173427 TGCTATGAATAAGTGTGGCTCATA 57.827 37.500 0.00 0.00 0.00 2.15
2603 2670 4.367039 AAACTAAAGACCCTTGCTGCTA 57.633 40.909 0.00 0.00 0.00 3.49
2720 2788 3.305131 CCACCATATGTGCATTGCAGATC 60.305 47.826 22.94 7.60 41.57 2.75
2728 2796 0.925558 TGGGACCACCATATGTGCAT 59.074 50.000 1.24 0.00 46.80 3.96
2786 2854 3.010584 AGGCCGGGAAATATAGCATTCAT 59.989 43.478 2.18 0.00 0.00 2.57
2829 2897 2.420022 CCCCGCACAAGAAACTTCATAG 59.580 50.000 0.00 0.00 0.00 2.23
2846 2917 0.034616 TAAACGTACAACCCACCCCG 59.965 55.000 0.00 0.00 0.00 5.73
2932 3003 5.689961 TGCAGATTTTTCTTTAAAACGAGGC 59.310 36.000 0.00 0.00 38.48 4.70
3071 3142 2.607499 AGATAGTCCTCCTCATGCCTG 58.393 52.381 0.00 0.00 0.00 4.85
3086 3157 6.311200 GCCTTGCAAAATAAACCACAAGATAG 59.689 38.462 0.00 0.00 37.32 2.08
3136 3208 9.082313 AGCTATAATGCCTTGCAAAATAATACT 57.918 29.630 0.00 0.00 43.62 2.12
3137 3209 9.696917 AAGCTATAATGCCTTGCAAAATAATAC 57.303 29.630 0.00 0.00 43.62 1.89
3138 3210 9.695526 CAAGCTATAATGCCTTGCAAAATAATA 57.304 29.630 0.00 0.00 43.62 0.98
3139 3211 8.423349 TCAAGCTATAATGCCTTGCAAAATAAT 58.577 29.630 0.00 0.00 43.62 1.28
3140 3212 7.780064 TCAAGCTATAATGCCTTGCAAAATAA 58.220 30.769 0.00 0.00 43.62 1.40
3141 3213 7.345422 TCAAGCTATAATGCCTTGCAAAATA 57.655 32.000 0.00 0.00 43.62 1.40
3142 3214 6.224665 TCAAGCTATAATGCCTTGCAAAAT 57.775 33.333 0.00 0.00 43.62 1.82
3143 3215 5.657826 TCAAGCTATAATGCCTTGCAAAA 57.342 34.783 0.00 0.00 43.62 2.44
3144 3216 5.657826 TTCAAGCTATAATGCCTTGCAAA 57.342 34.783 0.00 0.00 43.62 3.68
3145 3217 5.657826 TTTCAAGCTATAATGCCTTGCAA 57.342 34.783 0.00 0.00 43.62 4.08
3146 3218 5.657826 TTTTCAAGCTATAATGCCTTGCA 57.342 34.783 0.00 0.00 44.86 4.08
3147 3219 8.647143 TTATTTTTCAAGCTATAATGCCTTGC 57.353 30.769 0.00 0.00 0.00 4.01
3174 3246 7.931948 CGGAGGGAGTAAGATTAAACACATATT 59.068 37.037 0.00 0.00 0.00 1.28
3175 3247 7.070821 ACGGAGGGAGTAAGATTAAACACATAT 59.929 37.037 0.00 0.00 0.00 1.78
3176 3248 6.381994 ACGGAGGGAGTAAGATTAAACACATA 59.618 38.462 0.00 0.00 0.00 2.29
3177 3249 5.189145 ACGGAGGGAGTAAGATTAAACACAT 59.811 40.000 0.00 0.00 0.00 3.21
3184 3256 4.515028 TCAGACGGAGGGAGTAAGATTA 57.485 45.455 0.00 0.00 0.00 1.75
3226 3298 4.486090 TCGTTTTGCAAGCTAAAACAACA 58.514 34.783 18.63 4.26 44.28 3.33
3261 3333 0.031515 ATGATGTACCCCCTCCGTCA 60.032 55.000 0.00 0.00 0.00 4.35
3271 3343 9.467258 CAAAATCCAACAATCATATGATGTACC 57.533 33.333 18.85 0.00 34.49 3.34
3404 3476 7.387122 GCTTATTCTCAGATCTTATGCATCACA 59.613 37.037 0.19 0.00 0.00 3.58
3486 3558 6.875972 ACCTGGTAATACTGAAGATCTGTT 57.124 37.500 0.00 0.00 31.00 3.16
3596 3668 9.319143 CGAGAATATCTTGGTGTTCTAAGATTT 57.681 33.333 10.91 2.91 45.25 2.17
3675 3747 2.861274 TCATTGTCATTGTGCAGGACA 58.139 42.857 6.39 6.39 39.60 4.02
3711 3783 2.455674 TCATCAGGACTTGGACAACG 57.544 50.000 0.00 0.00 0.00 4.10
3846 3918 4.809496 CCATTGCCCCTCAGCGCT 62.809 66.667 2.64 2.64 34.65 5.92
3867 3939 1.537202 GCAGGTTCAATTGAGCTTCGT 59.463 47.619 19.93 6.77 0.00 3.85
3953 4025 2.066262 CAACGAACGCCTTGTATCTGT 58.934 47.619 0.00 0.00 0.00 3.41
3962 4034 2.482721 CCATCTTTAACAACGAACGCCT 59.517 45.455 0.00 0.00 0.00 5.52
3964 4036 2.846693 CCCATCTTTAACAACGAACGC 58.153 47.619 0.00 0.00 0.00 4.84
3965 4037 2.224549 TGCCCATCTTTAACAACGAACG 59.775 45.455 0.00 0.00 0.00 3.95
3966 4038 3.907894 TGCCCATCTTTAACAACGAAC 57.092 42.857 0.00 0.00 0.00 3.95
3967 4039 3.192422 CCATGCCCATCTTTAACAACGAA 59.808 43.478 0.00 0.00 0.00 3.85
4127 4208 1.906105 TAGGGTCCAACATCGGCCAC 61.906 60.000 2.24 0.00 0.00 5.01
4215 4296 9.424319 ACTTACAGTGAAGTTGTGAATACATAG 57.576 33.333 0.00 0.00 36.19 2.23
4235 4316 8.129496 TCTACAAACAGTATGGATGACTTACA 57.871 34.615 0.00 0.00 43.62 2.41
4236 4317 8.997621 TTCTACAAACAGTATGGATGACTTAC 57.002 34.615 0.00 0.00 43.62 2.34
4343 4438 9.676861 ACAATGAAGAAATTAGATGAGATGTGA 57.323 29.630 0.00 0.00 0.00 3.58
4346 4441 9.647679 CGAACAATGAAGAAATTAGATGAGATG 57.352 33.333 0.00 0.00 0.00 2.90
4366 4496 4.558178 TCTTGCCGTTATAAGTCGAACAA 58.442 39.130 0.00 1.97 0.00 2.83
4374 4504 3.555956 AGCACGAATCTTGCCGTTATAAG 59.444 43.478 8.14 0.00 41.18 1.73
4383 4513 4.504097 ACAAAGAAAAAGCACGAATCTTGC 59.496 37.500 3.32 3.32 40.52 4.01
4453 4611 6.969828 AAAAAGAAATACAAACGTGGCAAA 57.030 29.167 0.00 0.00 0.00 3.68
4478 4636 0.249699 ACAATTCGTGCGTGGTCAGA 60.250 50.000 0.00 0.00 0.00 3.27
4492 4650 5.649782 AATTTCTCAAGGCATCGACAATT 57.350 34.783 0.00 0.00 0.00 2.32
4540 4703 3.922910 ACAACTAACGAGTAGGCTTTCC 58.077 45.455 0.00 0.00 33.58 3.13
4605 4769 1.304134 ACGGAATGGTTCAAGCCCC 60.304 57.895 0.00 0.00 0.00 5.80
4612 4776 2.076863 CTCCAGTTGACGGAATGGTTC 58.923 52.381 2.88 0.00 34.32 3.62
4639 4804 6.968250 AGCTGTTGAATCAGAAAAGAAGAAG 58.032 36.000 0.00 0.00 37.61 2.85
4641 4806 6.949352 AAGCTGTTGAATCAGAAAAGAAGA 57.051 33.333 0.00 0.00 37.61 2.87
4671 4836 9.613428 CACAGAATTTGTAATATCCCTGAGTTA 57.387 33.333 0.00 0.00 38.16 2.24
4672 4837 7.067494 GCACAGAATTTGTAATATCCCTGAGTT 59.933 37.037 0.00 0.00 38.16 3.01
4673 4838 6.543831 GCACAGAATTTGTAATATCCCTGAGT 59.456 38.462 0.00 0.00 38.16 3.41
4674 4839 6.543465 TGCACAGAATTTGTAATATCCCTGAG 59.457 38.462 0.00 0.00 38.16 3.35
4675 4840 6.318648 GTGCACAGAATTTGTAATATCCCTGA 59.681 38.462 13.17 0.00 38.16 3.86
4676 4841 6.319658 AGTGCACAGAATTTGTAATATCCCTG 59.680 38.462 21.04 0.00 38.16 4.45
4677 4842 6.319658 CAGTGCACAGAATTTGTAATATCCCT 59.680 38.462 21.04 0.00 38.16 4.20
4678 4843 6.095440 ACAGTGCACAGAATTTGTAATATCCC 59.905 38.462 21.04 0.00 38.16 3.85
4679 4844 7.088589 ACAGTGCACAGAATTTGTAATATCC 57.911 36.000 21.04 0.00 38.16 2.59
4680 4845 7.852945 GCTACAGTGCACAGAATTTGTAATATC 59.147 37.037 21.04 4.01 38.16 1.63
4681 4846 7.554118 AGCTACAGTGCACAGAATTTGTAATAT 59.446 33.333 21.04 3.85 38.16 1.28
4682 4847 6.878923 AGCTACAGTGCACAGAATTTGTAATA 59.121 34.615 21.04 0.00 38.16 0.98
4683 4848 5.707298 AGCTACAGTGCACAGAATTTGTAAT 59.293 36.000 21.04 6.45 38.16 1.89
4684 4849 5.049474 CAGCTACAGTGCACAGAATTTGTAA 60.049 40.000 21.04 2.39 38.16 2.41
4685 4850 4.452114 CAGCTACAGTGCACAGAATTTGTA 59.548 41.667 21.04 15.75 38.16 2.41
4686 4851 3.251729 CAGCTACAGTGCACAGAATTTGT 59.748 43.478 21.04 15.45 41.94 2.83
4687 4852 3.251729 ACAGCTACAGTGCACAGAATTTG 59.748 43.478 21.04 9.85 34.99 2.32
4688 4853 3.480470 ACAGCTACAGTGCACAGAATTT 58.520 40.909 21.04 0.00 34.99 1.82
4689 4854 3.131709 ACAGCTACAGTGCACAGAATT 57.868 42.857 21.04 0.00 34.99 2.17
4703 4868 5.459762 GTGTCAAAAGTTACACGTACAGCTA 59.540 40.000 0.00 0.00 36.92 3.32
4719 4884 6.601613 AGACCAGACAAGTTTATGTGTCAAAA 59.398 34.615 6.57 0.00 45.40 2.44
4720 4885 6.119536 AGACCAGACAAGTTTATGTGTCAAA 58.880 36.000 6.57 0.00 45.40 2.69
4761 4926 2.559668 AGACCGGTTAAATCTGTGTCGA 59.440 45.455 9.42 0.00 0.00 4.20
4762 4927 2.921754 GAGACCGGTTAAATCTGTGTCG 59.078 50.000 9.42 0.00 0.00 4.35
4775 4942 5.646360 ACATGAAATTAAATTCGAGACCGGT 59.354 36.000 6.92 6.92 36.24 5.28
4777 4944 7.005062 AGACATGAAATTAAATTCGAGACCG 57.995 36.000 0.00 0.00 31.80 4.79
4791 4958 6.993079 TGCGTATGTAGGATAGACATGAAAT 58.007 36.000 0.00 0.00 38.03 2.17
4804 4971 2.967362 TGGACAAGTTGCGTATGTAGG 58.033 47.619 1.81 0.00 0.00 3.18
4805 4972 3.124636 GGTTGGACAAGTTGCGTATGTAG 59.875 47.826 1.81 0.00 0.00 2.74
4806 4973 3.068560 GGTTGGACAAGTTGCGTATGTA 58.931 45.455 1.81 0.00 0.00 2.29
4807 4974 1.877443 GGTTGGACAAGTTGCGTATGT 59.123 47.619 1.81 0.00 0.00 2.29
4808 4975 1.199097 GGGTTGGACAAGTTGCGTATG 59.801 52.381 1.81 0.00 0.00 2.39
4809 4976 1.073284 AGGGTTGGACAAGTTGCGTAT 59.927 47.619 1.81 0.00 0.00 3.06
4810 4977 0.470766 AGGGTTGGACAAGTTGCGTA 59.529 50.000 1.81 0.00 0.00 4.42
4811 4978 0.470766 TAGGGTTGGACAAGTTGCGT 59.529 50.000 1.81 0.00 0.00 5.24
4812 4979 1.265905 GTTAGGGTTGGACAAGTTGCG 59.734 52.381 1.81 0.00 0.00 4.85
4813 4980 2.552743 GAGTTAGGGTTGGACAAGTTGC 59.447 50.000 1.81 0.00 0.00 4.17
4814 4981 3.815401 CTGAGTTAGGGTTGGACAAGTTG 59.185 47.826 0.00 0.00 0.00 3.16
4815 4982 3.458487 ACTGAGTTAGGGTTGGACAAGTT 59.542 43.478 0.00 0.00 0.00 2.66
4816 4983 3.046374 ACTGAGTTAGGGTTGGACAAGT 58.954 45.455 0.00 0.00 0.00 3.16
4817 4984 3.771577 ACTGAGTTAGGGTTGGACAAG 57.228 47.619 0.00 0.00 0.00 3.16
4818 4985 3.815809 CAACTGAGTTAGGGTTGGACAA 58.184 45.455 0.00 0.00 37.32 3.18
4819 4986 2.486548 GCAACTGAGTTAGGGTTGGACA 60.487 50.000 0.00 0.00 40.16 4.02
4820 4987 2.152016 GCAACTGAGTTAGGGTTGGAC 58.848 52.381 0.00 0.00 40.16 4.02
4821 4988 1.771854 TGCAACTGAGTTAGGGTTGGA 59.228 47.619 0.00 0.00 40.16 3.53
4822 4989 2.270352 TGCAACTGAGTTAGGGTTGG 57.730 50.000 0.00 0.00 40.16 3.77
4823 4990 3.149196 ACATGCAACTGAGTTAGGGTTG 58.851 45.455 0.00 0.00 41.96 3.77
4824 4991 3.412386 GACATGCAACTGAGTTAGGGTT 58.588 45.455 0.00 0.00 0.00 4.11
4825 4992 2.290323 GGACATGCAACTGAGTTAGGGT 60.290 50.000 0.00 0.00 0.00 4.34
4826 4993 2.290260 TGGACATGCAACTGAGTTAGGG 60.290 50.000 0.00 0.00 0.00 3.53
4827 4994 2.744202 GTGGACATGCAACTGAGTTAGG 59.256 50.000 0.00 0.00 0.00 2.69
4828 4995 2.744202 GGTGGACATGCAACTGAGTTAG 59.256 50.000 0.00 0.00 0.00 2.34
4829 4996 2.371841 AGGTGGACATGCAACTGAGTTA 59.628 45.455 0.00 0.00 0.00 2.24
4830 4997 1.143684 AGGTGGACATGCAACTGAGTT 59.856 47.619 0.00 0.00 0.00 3.01
4831 4998 0.767375 AGGTGGACATGCAACTGAGT 59.233 50.000 0.00 0.00 0.00 3.41
4832 4999 1.901591 AAGGTGGACATGCAACTGAG 58.098 50.000 0.00 0.00 0.00 3.35
4833 5000 1.955778 CAAAGGTGGACATGCAACTGA 59.044 47.619 0.00 0.00 0.00 3.41
4834 5001 1.955778 TCAAAGGTGGACATGCAACTG 59.044 47.619 0.00 0.00 0.00 3.16
4835 5002 2.363306 TCAAAGGTGGACATGCAACT 57.637 45.000 0.00 0.00 0.00 3.16
4836 5003 3.505680 TGTATCAAAGGTGGACATGCAAC 59.494 43.478 0.00 0.00 0.00 4.17
4837 5004 3.505680 GTGTATCAAAGGTGGACATGCAA 59.494 43.478 0.00 0.00 0.00 4.08
4838 5005 3.081061 GTGTATCAAAGGTGGACATGCA 58.919 45.455 0.00 0.00 0.00 3.96
4839 5006 3.081061 TGTGTATCAAAGGTGGACATGC 58.919 45.455 0.00 0.00 0.00 4.06
4840 5007 5.902613 ATTGTGTATCAAAGGTGGACATG 57.097 39.130 0.00 0.00 39.62 3.21
4841 5008 6.267471 ACAAATTGTGTATCAAAGGTGGACAT 59.733 34.615 0.00 0.00 39.29 3.06
4842 5009 5.596361 ACAAATTGTGTATCAAAGGTGGACA 59.404 36.000 0.00 0.00 39.29 4.02
4843 5010 5.920273 CACAAATTGTGTATCAAAGGTGGAC 59.080 40.000 17.29 0.00 43.08 4.02
4844 5011 6.083098 CACAAATTGTGTATCAAAGGTGGA 57.917 37.500 17.29 0.00 43.08 4.02
4858 5025 3.417069 TCGAGGATGGACACAAATTGT 57.583 42.857 0.00 0.00 43.10 2.71
4859 5026 4.025730 CGTATCGAGGATGGACACAAATTG 60.026 45.833 0.00 0.00 0.00 2.32
4860 5027 4.119862 CGTATCGAGGATGGACACAAATT 58.880 43.478 0.00 0.00 0.00 1.82
4861 5028 3.383505 TCGTATCGAGGATGGACACAAAT 59.616 43.478 0.00 0.00 0.00 2.32
4862 5029 2.756207 TCGTATCGAGGATGGACACAAA 59.244 45.455 0.00 0.00 0.00 2.83
4863 5030 2.371306 TCGTATCGAGGATGGACACAA 58.629 47.619 0.00 0.00 0.00 3.33
4864 5031 2.047002 TCGTATCGAGGATGGACACA 57.953 50.000 0.00 0.00 0.00 3.72
4865 5032 3.114065 GTTTCGTATCGAGGATGGACAC 58.886 50.000 0.00 0.00 37.14 3.67
4866 5033 3.021695 AGTTTCGTATCGAGGATGGACA 58.978 45.455 0.00 0.00 37.14 4.02
4867 5034 3.712091 AGTTTCGTATCGAGGATGGAC 57.288 47.619 0.00 0.00 37.14 4.02
4868 5035 3.737047 GCAAGTTTCGTATCGAGGATGGA 60.737 47.826 0.00 0.00 37.14 3.41
4869 5036 2.540101 GCAAGTTTCGTATCGAGGATGG 59.460 50.000 0.00 0.00 37.14 3.51
4870 5037 2.540101 GGCAAGTTTCGTATCGAGGATG 59.460 50.000 0.00 0.00 37.14 3.51
4871 5038 2.431057 AGGCAAGTTTCGTATCGAGGAT 59.569 45.455 0.00 0.00 37.14 3.24
4872 5039 1.822990 AGGCAAGTTTCGTATCGAGGA 59.177 47.619 0.00 0.00 37.14 3.71
4873 5040 1.927174 CAGGCAAGTTTCGTATCGAGG 59.073 52.381 0.00 0.00 37.14 4.63
4874 5041 2.599082 GTCAGGCAAGTTTCGTATCGAG 59.401 50.000 0.00 0.00 37.14 4.04
4875 5042 2.602878 GTCAGGCAAGTTTCGTATCGA 58.397 47.619 0.00 0.00 0.00 3.59
4876 5043 1.659098 GGTCAGGCAAGTTTCGTATCG 59.341 52.381 0.00 0.00 0.00 2.92
4877 5044 2.007608 GGGTCAGGCAAGTTTCGTATC 58.992 52.381 0.00 0.00 0.00 2.24
4878 5045 1.339727 GGGGTCAGGCAAGTTTCGTAT 60.340 52.381 0.00 0.00 0.00 3.06
4879 5046 0.035739 GGGGTCAGGCAAGTTTCGTA 59.964 55.000 0.00 0.00 0.00 3.43
4880 5047 1.228154 GGGGTCAGGCAAGTTTCGT 60.228 57.895 0.00 0.00 0.00 3.85
4881 5048 1.073199 AGGGGTCAGGCAAGTTTCG 59.927 57.895 0.00 0.00 0.00 3.46
4882 5049 0.110486 TCAGGGGTCAGGCAAGTTTC 59.890 55.000 0.00 0.00 0.00 2.78
4883 5050 0.178990 GTCAGGGGTCAGGCAAGTTT 60.179 55.000 0.00 0.00 0.00 2.66
4884 5051 1.456287 GTCAGGGGTCAGGCAAGTT 59.544 57.895 0.00 0.00 0.00 2.66
4885 5052 2.529744 GGTCAGGGGTCAGGCAAGT 61.530 63.158 0.00 0.00 0.00 3.16
4886 5053 2.352805 GGTCAGGGGTCAGGCAAG 59.647 66.667 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.