Multiple sequence alignment - TraesCS2A01G022100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G022100 chr2A 100.000 6292 0 0 1 6292 10601905 10595614 0.000000e+00 11620.0
1 TraesCS2A01G022100 chr2B 95.937 3815 123 15 644 4455 14046543 14050328 0.000000e+00 6157.0
2 TraesCS2A01G022100 chr2B 92.347 1385 77 21 4488 5855 14050327 14051699 0.000000e+00 1943.0
3 TraesCS2A01G022100 chr2B 82.975 558 49 17 62 576 14046001 14046555 4.440000e-126 462.0
4 TraesCS2A01G022100 chr2B 100.000 30 0 0 6041 6070 728631133 728631104 8.810000e-04 56.5
5 TraesCS2A01G022100 chr2D 98.299 2116 34 1 644 2759 10336743 10334630 0.000000e+00 3707.0
6 TraesCS2A01G022100 chr2D 94.043 1578 49 13 2791 4366 10334631 10333097 0.000000e+00 2351.0
7 TraesCS2A01G022100 chr2D 93.161 1506 70 15 4359 5855 10333046 10331565 0.000000e+00 2180.0
8 TraesCS2A01G022100 chr2D 89.508 610 30 13 1 578 10337336 10336729 0.000000e+00 741.0
9 TraesCS2A01G022100 chr2D 86.574 216 16 7 6071 6273 10331506 10331291 6.350000e-55 226.0
10 TraesCS2A01G022100 chr4B 90.769 130 10 2 5910 6038 406466801 406466929 8.390000e-39 172.0
11 TraesCS2A01G022100 chr4B 100.000 34 0 0 6037 6070 406466895 406466928 5.270000e-06 63.9
12 TraesCS2A01G022100 chr7D 89.147 129 11 3 5905 6032 8735746 8735872 2.350000e-34 158.0
13 TraesCS2A01G022100 chr7D 89.516 124 11 2 5910 6032 9831884 9831762 8.450000e-34 156.0
14 TraesCS2A01G022100 chr7B 87.597 129 12 4 5911 6038 623943057 623942932 5.080000e-31 147.0
15 TraesCS2A01G022100 chr1D 85.827 127 12 5 5910 6033 217865932 217865809 5.120000e-26 130.0
16 TraesCS2A01G022100 chr1D 96.000 75 1 2 577 651 368627991 368627919 3.080000e-23 121.0
17 TraesCS2A01G022100 chr1D 91.667 48 4 0 5862 5909 217880401 217880354 4.070000e-07 67.6
18 TraesCS2A01G022100 chr5A 98.571 70 0 1 577 646 681274247 681274179 8.570000e-24 122.0
19 TraesCS2A01G022100 chr5A 88.235 102 11 1 5937 6037 230728299 230728198 3.080000e-23 121.0
20 TraesCS2A01G022100 chr5A 97.222 72 1 1 576 647 341137163 341137233 3.080000e-23 121.0
21 TraesCS2A01G022100 chr4D 96.000 75 2 1 573 647 173574888 173574961 3.080000e-23 121.0
22 TraesCS2A01G022100 chr4D 97.183 71 1 1 577 647 320108356 320108425 1.110000e-22 119.0
23 TraesCS2A01G022100 chr6D 97.183 71 1 1 577 647 94662756 94662687 1.110000e-22 119.0
24 TraesCS2A01G022100 chr6D 94.805 77 2 2 571 647 157816977 157817051 1.110000e-22 119.0
25 TraesCS2A01G022100 chr6D 97.183 71 1 1 577 647 267532890 267532821 1.110000e-22 119.0
26 TraesCS2A01G022100 chr6D 97.183 71 1 1 577 647 319703351 319703282 1.110000e-22 119.0
27 TraesCS2A01G022100 chr6D 85.321 109 13 3 5910 6017 308241101 308240995 6.670000e-20 110.0
28 TraesCS2A01G022100 chr3B 88.136 59 4 3 5851 5908 179168337 179168393 4.070000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G022100 chr2A 10595614 10601905 6291 True 11620 11620 100.000000 1 6292 1 chr2A.!!$R1 6291
1 TraesCS2A01G022100 chr2B 14046001 14051699 5698 False 2854 6157 90.419667 62 5855 3 chr2B.!!$F1 5793
2 TraesCS2A01G022100 chr2D 10331291 10337336 6045 True 1841 3707 92.317000 1 6273 5 chr2D.!!$R1 6272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 669 0.338467 TTCAGCTCTAGCCTACCCCA 59.662 55.000 0.00 0.0 43.38 4.96 F
619 670 0.338467 TCAGCTCTAGCCTACCCCAA 59.662 55.000 0.00 0.0 43.38 4.12 F
621 672 0.340208 AGCTCTAGCCTACCCCAACT 59.660 55.000 0.00 0.0 43.38 3.16 F
1189 1242 0.967380 GGTGGGAATGCCAAGTGGAG 60.967 60.000 0.00 0.0 37.39 3.86 F
1708 1761 2.198827 TGGGAGTTCACGCAATCATT 57.801 45.000 0.00 0.0 0.00 2.57 F
3207 3260 1.412710 GCTGATACCGGGATGACTTCA 59.587 52.381 2.14 0.0 0.00 3.02 F
4715 4848 0.538746 TGGAGCTGACACGAGTGGTA 60.539 55.000 8.19 0.0 34.19 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 2528 0.170784 CACGGTGCTGCAATGCAATA 59.829 50.000 9.92 0.0 45.12 1.90 R
2643 2696 1.731160 CTTCCTTCTCTTGAAGCAGCG 59.269 52.381 0.67 0.0 46.13 5.18 R
2767 2820 2.203470 TCCTTGCAGCACATCATCAA 57.797 45.000 0.00 0.0 0.00 2.57 R
3165 3218 3.362706 TCAGAGGTACCGAAGCTACATT 58.637 45.455 6.18 0.0 35.60 2.71 R
3505 3574 4.095483 CACATTTGTTATCAGGAGACCAGC 59.905 45.833 0.00 0.0 0.00 4.85 R
4723 4856 0.526662 CTTTCAGGTCGCGGACTAGT 59.473 55.000 6.13 0.0 32.47 2.57 R
5938 6095 0.107214 TAAGCCGGCCCATCTTTGAG 60.107 55.000 26.15 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.119495 GGAGCTGTTCCAAATTATTGCGT 60.119 43.478 5.59 0.00 46.01 5.24
39 40 4.666402 GCTGTTCCAAATTATTGCGTTTGC 60.666 41.667 0.00 0.00 43.20 3.68
46 47 5.390356 CCAAATTATTGCGTTTGCCGATTTT 60.390 36.000 0.00 0.00 41.78 1.82
64 69 7.148474 GCCGATTTTGACTTGTTACTTCTATGA 60.148 37.037 0.00 0.00 0.00 2.15
100 108 4.924305 ATGTGATTCCATTTCCATTCCG 57.076 40.909 0.00 0.00 0.00 4.30
107 115 2.307392 TCCATTTCCATTCCGGACAGAA 59.693 45.455 1.83 4.57 46.36 3.02
162 174 1.072331 GAAGCCAGGGAGACAGTTTCA 59.928 52.381 0.00 0.00 0.00 2.69
163 175 1.366319 AGCCAGGGAGACAGTTTCAT 58.634 50.000 0.00 0.00 0.00 2.57
199 228 2.579860 AGGGCTTCCATCATTTGTCTCT 59.420 45.455 0.00 0.00 0.00 3.10
217 252 2.071540 TCTGATTCGTTGCTGCTCTTG 58.928 47.619 0.00 0.00 0.00 3.02
218 253 1.129998 CTGATTCGTTGCTGCTCTTGG 59.870 52.381 0.00 0.00 0.00 3.61
298 342 4.522789 GGTGATGTATTTGGAGTGGTGTTT 59.477 41.667 0.00 0.00 0.00 2.83
326 372 4.623932 AGAGTTTCCTGCAGTGTAATGA 57.376 40.909 13.81 0.00 0.00 2.57
430 479 2.164219 CGTGCTGAGGCCAAATGTTTAT 59.836 45.455 5.01 0.00 37.74 1.40
451 500 4.981806 TTGCCATTTGACCAGTATAAGC 57.018 40.909 0.00 0.00 0.00 3.09
459 508 7.095607 CCATTTGACCAGTATAAGCGATTAGTC 60.096 40.741 0.00 1.25 0.00 2.59
526 577 8.815565 ATTCAACACACAATATACAATGGGTA 57.184 30.769 0.00 0.00 30.48 3.69
543 594 6.575244 ATGGGTACAGTCCTATTTGATTCA 57.425 37.500 0.00 0.00 0.00 2.57
573 624 7.827819 TTATTTTGTATGACTTGTCTCTCGG 57.172 36.000 2.35 0.00 0.00 4.63
574 625 2.941453 TGTATGACTTGTCTCTCGGC 57.059 50.000 2.35 0.00 0.00 5.54
575 626 2.167662 TGTATGACTTGTCTCTCGGCA 58.832 47.619 2.35 0.00 0.00 5.69
576 627 2.760650 TGTATGACTTGTCTCTCGGCAT 59.239 45.455 2.35 0.00 0.00 4.40
577 628 3.195610 TGTATGACTTGTCTCTCGGCATT 59.804 43.478 2.35 0.00 0.00 3.56
578 629 2.084610 TGACTTGTCTCTCGGCATTG 57.915 50.000 2.35 0.00 0.00 2.82
579 630 1.338105 TGACTTGTCTCTCGGCATTGG 60.338 52.381 2.35 0.00 0.00 3.16
580 631 0.687354 ACTTGTCTCTCGGCATTGGT 59.313 50.000 0.00 0.00 0.00 3.67
581 632 1.072331 ACTTGTCTCTCGGCATTGGTT 59.928 47.619 0.00 0.00 0.00 3.67
582 633 1.466167 CTTGTCTCTCGGCATTGGTTG 59.534 52.381 0.00 0.00 0.00 3.77
583 634 0.396435 TGTCTCTCGGCATTGGTTGT 59.604 50.000 0.00 0.00 0.00 3.32
584 635 0.798776 GTCTCTCGGCATTGGTTGTG 59.201 55.000 0.00 0.00 0.00 3.33
585 636 0.684535 TCTCTCGGCATTGGTTGTGA 59.315 50.000 0.00 0.00 0.00 3.58
586 637 1.081892 CTCTCGGCATTGGTTGTGAG 58.918 55.000 0.00 0.00 33.70 3.51
587 638 0.684535 TCTCGGCATTGGTTGTGAGA 59.315 50.000 0.00 0.00 36.94 3.27
588 639 1.278985 TCTCGGCATTGGTTGTGAGAT 59.721 47.619 0.00 0.00 35.44 2.75
589 640 2.086869 CTCGGCATTGGTTGTGAGATT 58.913 47.619 0.00 0.00 34.04 2.40
590 641 2.083774 TCGGCATTGGTTGTGAGATTC 58.916 47.619 0.00 0.00 0.00 2.52
591 642 2.086869 CGGCATTGGTTGTGAGATTCT 58.913 47.619 0.00 0.00 0.00 2.40
592 643 2.489329 CGGCATTGGTTGTGAGATTCTT 59.511 45.455 0.00 0.00 0.00 2.52
593 644 3.689161 CGGCATTGGTTGTGAGATTCTTA 59.311 43.478 0.00 0.00 0.00 2.10
594 645 4.336433 CGGCATTGGTTGTGAGATTCTTAT 59.664 41.667 0.00 0.00 0.00 1.73
595 646 5.585390 GGCATTGGTTGTGAGATTCTTATG 58.415 41.667 0.00 0.00 0.00 1.90
596 647 5.450965 GGCATTGGTTGTGAGATTCTTATGG 60.451 44.000 0.00 0.00 0.00 2.74
597 648 5.450965 GCATTGGTTGTGAGATTCTTATGGG 60.451 44.000 0.00 0.00 0.00 4.00
598 649 4.927267 TGGTTGTGAGATTCTTATGGGT 57.073 40.909 0.00 0.00 0.00 4.51
599 650 5.255397 TGGTTGTGAGATTCTTATGGGTT 57.745 39.130 0.00 0.00 0.00 4.11
600 651 5.640147 TGGTTGTGAGATTCTTATGGGTTT 58.360 37.500 0.00 0.00 0.00 3.27
601 652 5.710099 TGGTTGTGAGATTCTTATGGGTTTC 59.290 40.000 0.00 0.00 0.00 2.78
602 653 5.710099 GGTTGTGAGATTCTTATGGGTTTCA 59.290 40.000 0.00 0.00 0.00 2.69
603 654 6.127897 GGTTGTGAGATTCTTATGGGTTTCAG 60.128 42.308 0.00 0.00 0.00 3.02
604 655 4.943705 TGTGAGATTCTTATGGGTTTCAGC 59.056 41.667 0.00 0.00 0.00 4.26
605 656 5.189180 GTGAGATTCTTATGGGTTTCAGCT 58.811 41.667 0.00 0.00 0.00 4.24
606 657 5.295540 GTGAGATTCTTATGGGTTTCAGCTC 59.704 44.000 0.00 0.00 0.00 4.09
607 658 5.190528 TGAGATTCTTATGGGTTTCAGCTCT 59.809 40.000 0.00 0.00 0.00 4.09
608 659 6.384015 TGAGATTCTTATGGGTTTCAGCTCTA 59.616 38.462 0.00 0.00 0.00 2.43
609 660 6.825610 AGATTCTTATGGGTTTCAGCTCTAG 58.174 40.000 0.00 0.00 0.00 2.43
610 661 4.408182 TCTTATGGGTTTCAGCTCTAGC 57.592 45.455 0.00 0.00 42.49 3.42
611 662 3.134804 TCTTATGGGTTTCAGCTCTAGCC 59.865 47.826 0.00 0.00 43.38 3.93
612 663 1.589414 ATGGGTTTCAGCTCTAGCCT 58.411 50.000 0.00 0.00 43.38 4.58
613 664 2.247699 TGGGTTTCAGCTCTAGCCTA 57.752 50.000 0.00 0.00 43.38 3.93
614 665 1.831736 TGGGTTTCAGCTCTAGCCTAC 59.168 52.381 0.00 0.00 43.38 3.18
615 666 1.139256 GGGTTTCAGCTCTAGCCTACC 59.861 57.143 0.00 1.68 43.38 3.18
616 667 1.139256 GGTTTCAGCTCTAGCCTACCC 59.861 57.143 0.00 0.00 43.38 3.69
617 668 1.139256 GTTTCAGCTCTAGCCTACCCC 59.861 57.143 0.00 0.00 43.38 4.95
618 669 0.338467 TTCAGCTCTAGCCTACCCCA 59.662 55.000 0.00 0.00 43.38 4.96
619 670 0.338467 TCAGCTCTAGCCTACCCCAA 59.662 55.000 0.00 0.00 43.38 4.12
620 671 0.466124 CAGCTCTAGCCTACCCCAAC 59.534 60.000 0.00 0.00 43.38 3.77
621 672 0.340208 AGCTCTAGCCTACCCCAACT 59.660 55.000 0.00 0.00 43.38 3.16
622 673 1.205055 GCTCTAGCCTACCCCAACTT 58.795 55.000 0.00 0.00 34.31 2.66
623 674 1.134371 GCTCTAGCCTACCCCAACTTG 60.134 57.143 0.00 0.00 34.31 3.16
624 675 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
625 676 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
626 677 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
627 678 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
638 689 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
639 690 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
640 691 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
641 692 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
642 693 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
661 712 5.163874 GCTTTGTTGTCTCTCAGCATTCTAG 60.164 44.000 0.00 0.00 37.14 2.43
662 713 5.728637 TTGTTGTCTCTCAGCATTCTAGA 57.271 39.130 0.00 0.00 37.14 2.43
683 734 2.867368 ACAAATGTAGTTGCGTCGTTGA 59.133 40.909 0.00 0.00 31.29 3.18
702 753 5.449862 CGTTGATCCTCTCTCCTCTGTTTAG 60.450 48.000 0.00 0.00 0.00 1.85
737 788 1.633945 AGTCTTGGTAATGTGGGGTCC 59.366 52.381 0.00 0.00 0.00 4.46
864 915 5.063944 CACCTGCTATATGTTGTGACTGTTC 59.936 44.000 0.00 0.00 0.00 3.18
1173 1226 4.174411 TGTTCTCAATAGTCACGAGGTG 57.826 45.455 0.00 0.00 34.45 4.00
1189 1242 0.967380 GGTGGGAATGCCAAGTGGAG 60.967 60.000 0.00 0.00 37.39 3.86
1398 1451 7.307989 CCTTCACACAACTTAAACATAGACCTG 60.308 40.741 0.00 0.00 0.00 4.00
1708 1761 2.198827 TGGGAGTTCACGCAATCATT 57.801 45.000 0.00 0.00 0.00 2.57
1954 2007 5.163581 GCCAATGAGTATGAGCAATCACTTT 60.164 40.000 0.00 0.00 0.00 2.66
2149 2202 6.674066 TCAAATGGTAATTTCGGTTCAAGAC 58.326 36.000 0.00 0.00 33.59 3.01
2150 2203 5.638596 AATGGTAATTTCGGTTCAAGACC 57.361 39.130 0.00 0.00 45.55 3.85
2475 2528 4.982241 TTCTCATTCCAGAAGTCCAAGT 57.018 40.909 0.00 0.00 0.00 3.16
2643 2696 9.264144 GACCTTCAGTCTTTTATGCAGAGCATC 62.264 44.444 7.88 0.00 43.14 3.91
2900 2953 7.115378 GCACTAAAATCCACTTTTCATGTGAAG 59.885 37.037 8.58 8.58 38.09 3.02
3033 3086 6.710597 AAAGTTACTCAACCTTTCCTTTCC 57.289 37.500 0.00 0.00 35.05 3.13
3034 3087 5.648330 AGTTACTCAACCTTTCCTTTCCT 57.352 39.130 0.00 0.00 35.05 3.36
3043 3096 3.704566 ACCTTTCCTTTCCTTTGTTGGTC 59.295 43.478 0.00 0.00 0.00 4.02
3156 3209 5.778750 TCTTACCTGCTCTGTAAGGTAGTTT 59.221 40.000 15.66 0.00 46.93 2.66
3157 3210 4.273148 ACCTGCTCTGTAAGGTAGTTTG 57.727 45.455 0.00 0.00 45.15 2.93
3158 3211 3.003480 CCTGCTCTGTAAGGTAGTTTGC 58.997 50.000 0.00 0.00 0.00 3.68
3161 3214 4.456535 TGCTCTGTAAGGTAGTTTGCAAA 58.543 39.130 8.05 8.05 0.00 3.68
3162 3215 5.070001 TGCTCTGTAAGGTAGTTTGCAAAT 58.930 37.500 16.21 7.20 0.00 2.32
3163 3216 5.181245 TGCTCTGTAAGGTAGTTTGCAAATC 59.819 40.000 16.21 9.21 0.00 2.17
3164 3217 5.181245 GCTCTGTAAGGTAGTTTGCAAATCA 59.819 40.000 16.21 3.26 0.00 2.57
3165 3218 6.293955 GCTCTGTAAGGTAGTTTGCAAATCAA 60.294 38.462 16.21 0.94 0.00 2.57
3206 3259 1.689273 AGCTGATACCGGGATGACTTC 59.311 52.381 2.14 0.00 0.00 3.01
3207 3260 1.412710 GCTGATACCGGGATGACTTCA 59.587 52.381 2.14 0.00 0.00 3.02
3208 3261 2.546795 GCTGATACCGGGATGACTTCAG 60.547 54.545 2.14 6.93 33.86 3.02
3209 3262 2.959030 CTGATACCGGGATGACTTCAGA 59.041 50.000 2.14 0.00 32.77 3.27
3210 3263 3.371034 TGATACCGGGATGACTTCAGAA 58.629 45.455 2.14 0.00 0.00 3.02
3211 3264 3.967326 TGATACCGGGATGACTTCAGAAT 59.033 43.478 2.14 0.00 0.00 2.40
3212 3265 2.990066 ACCGGGATGACTTCAGAATC 57.010 50.000 6.32 0.00 0.00 2.52
3213 3266 2.472029 ACCGGGATGACTTCAGAATCT 58.528 47.619 6.32 0.00 0.00 2.40
3214 3267 2.840651 ACCGGGATGACTTCAGAATCTT 59.159 45.455 6.32 0.00 0.00 2.40
3215 3268 3.118592 ACCGGGATGACTTCAGAATCTTC 60.119 47.826 6.32 0.00 0.00 2.87
3216 3269 3.133721 CCGGGATGACTTCAGAATCTTCT 59.866 47.826 0.00 0.00 38.25 2.85
3473 3542 9.768662 AAGTTGCTTTTCATGTTCAATTCTATT 57.231 25.926 0.00 0.00 0.00 1.73
3515 3584 1.421268 TGTTGAACATGCTGGTCTCCT 59.579 47.619 0.00 0.00 34.53 3.69
3521 3590 3.550437 ACATGCTGGTCTCCTGATAAC 57.450 47.619 0.00 0.00 0.00 1.89
3560 3629 7.603404 TGCCTGTATACTTAAACGTAAATGTGT 59.397 33.333 4.17 0.00 0.00 3.72
3696 3765 4.489810 TGTTTGCCGCTTAACAATATTGG 58.510 39.130 19.37 2.98 31.75 3.16
3701 3770 4.339530 TGCCGCTTAACAATATTGGCATTA 59.660 37.500 19.37 6.65 45.35 1.90
3765 3834 6.415206 ACAAGTGCCTTTAAGTACAGTCTA 57.585 37.500 0.00 0.00 0.00 2.59
3794 3863 6.763610 GCTGCTAACAATCATAGTACCTCTTT 59.236 38.462 0.00 0.00 0.00 2.52
3928 3999 1.282157 GCTTCCACCACAGGTATCCTT 59.718 52.381 0.00 0.00 32.11 3.36
3967 4038 6.969043 TGTGTATCCTTCAACCAGGAATATT 58.031 36.000 0.00 0.00 46.50 1.28
4189 4260 1.140312 TCAGGAGAGCCAGTTTGGTT 58.860 50.000 0.00 0.00 40.46 3.67
4283 4354 3.455910 TCACCCCATTCCTAGATCACAAG 59.544 47.826 0.00 0.00 0.00 3.16
4305 4377 3.890147 GTCTGTGTTATCTATCCCTCGGT 59.110 47.826 0.00 0.00 0.00 4.69
4426 4556 7.385778 TGTGACATGGCTTTAAATAAGTACC 57.614 36.000 0.00 0.00 0.00 3.34
4430 4560 6.727394 ACATGGCTTTAAATAAGTACCAGGA 58.273 36.000 0.00 0.00 32.21 3.86
4431 4561 7.354312 ACATGGCTTTAAATAAGTACCAGGAT 58.646 34.615 0.00 0.00 32.21 3.24
4459 4589 3.560636 ATAAACTTGGGATGAGACGGG 57.439 47.619 0.00 0.00 0.00 5.28
4462 4592 2.285368 TTGGGATGAGACGGGCCT 60.285 61.111 0.84 0.00 0.00 5.19
4465 4595 4.554036 GGATGAGACGGGCCTGGC 62.554 72.222 18.00 14.63 0.00 4.85
4484 4614 1.560146 GCCTAGCCCTTGGAACTAGTT 59.440 52.381 8.13 8.13 33.09 2.24
4609 4742 5.649831 GGATCTAACCAGATTCAAGTTTGCT 59.350 40.000 0.00 0.00 41.78 3.91
4659 4792 2.367567 CGGCTATGGTCCTAGGCTTTTA 59.632 50.000 2.96 0.00 40.99 1.52
4704 4837 7.047891 CCTTTATACTACATGTTTGGAGCTGA 58.952 38.462 2.30 0.00 37.30 4.26
4715 4848 0.538746 TGGAGCTGACACGAGTGGTA 60.539 55.000 8.19 0.00 34.19 3.25
4723 4856 4.552355 CTGACACGAGTGGTACATTGTAA 58.448 43.478 8.19 0.00 44.52 2.41
4732 4865 3.861689 GTGGTACATTGTAACTAGTCCGC 59.138 47.826 12.84 5.30 44.52 5.54
4734 4867 3.181497 GGTACATTGTAACTAGTCCGCGA 60.181 47.826 8.23 0.00 0.00 5.87
4737 4870 1.538047 TTGTAACTAGTCCGCGACCT 58.462 50.000 8.23 5.01 32.18 3.85
4789 4922 8.572828 TGTATGACATTGTTGAATTTGTGTTC 57.427 30.769 0.00 0.00 0.00 3.18
4796 4929 9.598517 ACATTGTTGAATTTGTGTTCAATTACT 57.401 25.926 5.49 0.00 46.33 2.24
4805 4938 5.903764 TGTGTTCAATTACTGCAATTTGC 57.096 34.783 14.49 14.49 45.29 3.68
4855 4988 2.027100 TGGTGAACGTATTGGGCATGTA 60.027 45.455 0.00 0.00 0.00 2.29
5018 5153 4.885413 TGCTGCTGTAAATTTGCTTGATT 58.115 34.783 7.80 0.00 0.00 2.57
5066 5202 4.454504 TCATCGTTTAGAACTTTTGAGCCC 59.545 41.667 0.00 0.00 0.00 5.19
5087 5223 6.663093 AGCCCACATGATTTAACTATTGTTCA 59.337 34.615 0.00 0.00 37.59 3.18
5144 5284 5.949952 TCACTTACTGACTGAGCATACCTTA 59.050 40.000 0.00 0.00 0.00 2.69
5168 5308 2.301870 TCGGTGTTTGCAGGAAGACTAT 59.698 45.455 0.00 0.00 0.00 2.12
5171 5311 3.077359 GTGTTTGCAGGAAGACTATGCT 58.923 45.455 8.25 0.00 40.62 3.79
5432 5577 2.644798 CCTCTTTTCCTCCTCCCAAGAA 59.355 50.000 0.00 0.00 0.00 2.52
5519 5667 2.173569 GCACCCCTCTTACTGAATGGAT 59.826 50.000 0.00 0.00 0.00 3.41
5577 5726 3.761218 TGGTTTCTGCTTCTGTTCAAACA 59.239 39.130 0.00 0.00 37.37 2.83
5658 5812 2.100605 ATCTCGTTTCCCTCTTGTGC 57.899 50.000 0.00 0.00 0.00 4.57
5739 5895 6.575162 CTGTAAGCAACTTAGGGAAACAAT 57.425 37.500 0.00 0.00 0.00 2.71
5805 5962 4.764679 TTAGAACTGAACGCAATGCATT 57.235 36.364 5.99 5.99 0.00 3.56
5815 5972 6.567959 TGAACGCAATGCATTTAAATATCCA 58.432 32.000 9.83 0.00 0.00 3.41
5838 5995 5.931724 CACTTTGTTGGACAAAAAGAAGGTT 59.068 36.000 17.97 2.85 46.15 3.50
5855 6012 4.993705 AGGTTGAATTCAGAACCCTACA 57.006 40.909 20.88 0.00 42.38 2.74
5856 6013 5.520748 AGGTTGAATTCAGAACCCTACAT 57.479 39.130 20.88 5.76 42.38 2.29
5857 6014 5.256474 AGGTTGAATTCAGAACCCTACATG 58.744 41.667 20.88 0.00 42.38 3.21
5859 6016 5.476945 GGTTGAATTCAGAACCCTACATGTT 59.523 40.000 15.74 0.00 36.39 2.71
5860 6017 6.657541 GGTTGAATTCAGAACCCTACATGTTA 59.342 38.462 15.74 0.00 36.39 2.41
5862 6019 6.414732 TGAATTCAGAACCCTACATGTTAGG 58.585 40.000 2.30 8.06 34.52 2.69
5886 6043 3.632896 ACCCCGTGGTATAACCCG 58.367 61.111 0.00 0.00 45.45 5.28
5887 6044 2.109593 CCCCGTGGTATAACCCGC 59.890 66.667 0.00 0.00 37.50 6.13
5889 6046 2.437396 CCCGTGGTATAACCCGCCT 61.437 63.158 0.00 0.00 37.50 5.52
5891 6048 0.812412 CCGTGGTATAACCCGCCTTG 60.812 60.000 0.00 0.00 37.50 3.61
5892 6049 0.176219 CGTGGTATAACCCGCCTTGA 59.824 55.000 0.00 0.00 37.50 3.02
5894 6051 2.713877 GTGGTATAACCCGCCTTGAAA 58.286 47.619 0.00 0.00 37.50 2.69
5895 6052 2.681344 GTGGTATAACCCGCCTTGAAAG 59.319 50.000 0.00 0.00 37.50 2.62
5896 6053 2.294979 GGTATAACCCGCCTTGAAAGG 58.705 52.381 4.63 4.63 39.85 3.11
5904 6061 2.636412 GCCTTGAAAGGGCCGGTTC 61.636 63.158 11.03 14.09 46.56 3.62
5905 6062 1.228429 CCTTGAAAGGGCCGGTTCA 60.228 57.895 18.27 18.27 42.66 3.18
5907 6064 1.228429 TTGAAAGGGCCGGTTCAGG 60.228 57.895 20.31 0.00 35.29 3.86
5916 6073 2.772739 CCGGTTCAGGCTGATCAAG 58.227 57.895 19.50 14.27 0.00 3.02
5917 6074 0.250234 CCGGTTCAGGCTGATCAAGA 59.750 55.000 19.50 0.00 0.00 3.02
5918 6075 1.363744 CGGTTCAGGCTGATCAAGAC 58.636 55.000 19.50 12.75 0.00 3.01
5919 6076 1.363744 GGTTCAGGCTGATCAAGACG 58.636 55.000 19.50 0.00 39.88 4.18
5920 6077 0.723981 GTTCAGGCTGATCAAGACGC 59.276 55.000 19.50 0.00 39.88 5.19
5921 6078 0.391661 TTCAGGCTGATCAAGACGCC 60.392 55.000 19.50 14.33 39.88 5.68
5922 6079 1.078918 CAGGCTGATCAAGACGCCA 60.079 57.895 21.84 0.00 44.85 5.69
5923 6080 1.088340 CAGGCTGATCAAGACGCCAG 61.088 60.000 21.84 12.69 44.85 4.85
5924 6081 1.219124 GGCTGATCAAGACGCCAGA 59.781 57.895 16.63 0.00 42.06 3.86
5925 6082 0.809241 GGCTGATCAAGACGCCAGAG 60.809 60.000 16.63 0.00 42.06 3.35
5926 6083 1.427592 GCTGATCAAGACGCCAGAGC 61.428 60.000 0.00 0.00 0.00 4.09
5927 6084 0.809241 CTGATCAAGACGCCAGAGCC 60.809 60.000 0.00 0.00 34.57 4.70
5928 6085 1.219124 GATCAAGACGCCAGAGCCA 59.781 57.895 0.00 0.00 34.57 4.75
5929 6086 0.809241 GATCAAGACGCCAGAGCCAG 60.809 60.000 0.00 0.00 34.57 4.85
5930 6087 1.260538 ATCAAGACGCCAGAGCCAGA 61.261 55.000 0.00 0.00 34.57 3.86
5931 6088 1.447489 CAAGACGCCAGAGCCAGAG 60.447 63.158 0.00 0.00 34.57 3.35
5932 6089 2.654079 AAGACGCCAGAGCCAGAGG 61.654 63.158 0.00 0.00 34.57 3.69
5933 6090 4.154347 GACGCCAGAGCCAGAGGG 62.154 72.222 0.00 0.00 34.57 4.30
5943 6100 4.033776 CCAGAGGGGCGGCTCAAA 62.034 66.667 13.05 0.00 0.00 2.69
5944 6101 2.437359 CAGAGGGGCGGCTCAAAG 60.437 66.667 13.05 0.00 0.00 2.77
5945 6102 2.607750 AGAGGGGCGGCTCAAAGA 60.608 61.111 13.05 0.00 0.00 2.52
5946 6103 1.997874 AGAGGGGCGGCTCAAAGAT 60.998 57.895 13.05 0.00 0.00 2.40
5947 6104 1.821332 GAGGGGCGGCTCAAAGATG 60.821 63.158 13.05 0.00 0.00 2.90
5948 6105 2.830370 GGGGCGGCTCAAAGATGG 60.830 66.667 9.56 0.00 0.00 3.51
5949 6106 2.830370 GGGCGGCTCAAAGATGGG 60.830 66.667 9.56 0.00 0.00 4.00
5955 6112 2.273449 CTCAAAGATGGGCCGGCT 59.727 61.111 28.56 6.33 0.00 5.52
5956 6113 1.379044 CTCAAAGATGGGCCGGCTT 60.379 57.895 28.56 9.58 0.00 4.35
5957 6114 0.107214 CTCAAAGATGGGCCGGCTTA 60.107 55.000 28.56 16.30 0.00 3.09
5958 6115 0.329931 TCAAAGATGGGCCGGCTTAA 59.670 50.000 28.56 12.80 0.00 1.85
5959 6116 0.740737 CAAAGATGGGCCGGCTTAAG 59.259 55.000 28.56 4.92 0.00 1.85
5960 6117 0.395724 AAAGATGGGCCGGCTTAAGG 60.396 55.000 28.56 0.00 0.00 2.69
5977 6134 2.747855 GCCCAAGGCCAGAAGACG 60.748 66.667 5.01 0.00 44.06 4.18
5978 6135 2.045926 CCCAAGGCCAGAAGACGG 60.046 66.667 5.01 0.00 0.00 4.79
5985 6142 3.197790 CCAGAAGACGGCATGCGG 61.198 66.667 22.34 22.34 0.00 5.69
5986 6143 3.869272 CAGAAGACGGCATGCGGC 61.869 66.667 23.67 15.42 43.74 6.53
5995 6152 3.285215 GCATGCGGCCTGGAGATG 61.285 66.667 0.00 0.00 36.11 2.90
5996 6153 2.191375 CATGCGGCCTGGAGATGT 59.809 61.111 0.00 0.00 0.00 3.06
5997 6154 1.447217 CATGCGGCCTGGAGATGTA 59.553 57.895 0.00 0.00 0.00 2.29
5998 6155 0.179048 CATGCGGCCTGGAGATGTAA 60.179 55.000 0.00 0.00 0.00 2.41
5999 6156 0.107456 ATGCGGCCTGGAGATGTAAG 59.893 55.000 0.00 0.00 0.00 2.34
6000 6157 1.889573 GCGGCCTGGAGATGTAAGC 60.890 63.158 0.00 0.00 0.00 3.09
6001 6158 1.227674 CGGCCTGGAGATGTAAGCC 60.228 63.158 0.00 0.00 37.03 4.35
6002 6159 1.227674 GGCCTGGAGATGTAAGCCG 60.228 63.158 0.00 0.00 0.00 5.52
6003 6160 1.889573 GCCTGGAGATGTAAGCCGC 60.890 63.158 0.00 0.00 0.00 6.53
6004 6161 1.227674 CCTGGAGATGTAAGCCGCC 60.228 63.158 0.00 0.00 0.00 6.13
6005 6162 1.690219 CCTGGAGATGTAAGCCGCCT 61.690 60.000 0.00 0.00 0.00 5.52
6006 6163 0.531532 CTGGAGATGTAAGCCGCCTG 60.532 60.000 0.00 0.00 0.00 4.85
6007 6164 0.975556 TGGAGATGTAAGCCGCCTGA 60.976 55.000 0.00 0.00 0.00 3.86
6008 6165 0.394565 GGAGATGTAAGCCGCCTGAT 59.605 55.000 0.00 0.00 0.00 2.90
6009 6166 1.506493 GAGATGTAAGCCGCCTGATG 58.494 55.000 0.00 0.00 0.00 3.07
6010 6167 1.069204 GAGATGTAAGCCGCCTGATGA 59.931 52.381 0.00 0.00 0.00 2.92
6011 6168 1.696336 AGATGTAAGCCGCCTGATGAT 59.304 47.619 0.00 0.00 0.00 2.45
6012 6169 1.802960 GATGTAAGCCGCCTGATGATG 59.197 52.381 0.00 0.00 0.00 3.07
6013 6170 0.829990 TGTAAGCCGCCTGATGATGA 59.170 50.000 0.00 0.00 0.00 2.92
6014 6171 1.221414 GTAAGCCGCCTGATGATGAC 58.779 55.000 0.00 0.00 0.00 3.06
6015 6172 1.123077 TAAGCCGCCTGATGATGACT 58.877 50.000 0.00 0.00 0.00 3.41
6016 6173 0.254178 AAGCCGCCTGATGATGACTT 59.746 50.000 0.00 0.00 0.00 3.01
6017 6174 0.463295 AGCCGCCTGATGATGACTTG 60.463 55.000 0.00 0.00 0.00 3.16
6018 6175 0.745845 GCCGCCTGATGATGACTTGT 60.746 55.000 0.00 0.00 0.00 3.16
6019 6176 1.293924 CCGCCTGATGATGACTTGTC 58.706 55.000 0.00 0.00 0.00 3.18
6020 6177 1.405933 CCGCCTGATGATGACTTGTCA 60.406 52.381 5.89 5.89 0.00 3.58
6021 6178 2.558378 CGCCTGATGATGACTTGTCAT 58.442 47.619 15.16 15.16 38.94 3.06
6022 6179 3.493176 CCGCCTGATGATGACTTGTCATA 60.493 47.826 15.21 5.98 36.49 2.15
6023 6180 3.739810 CGCCTGATGATGACTTGTCATAG 59.260 47.826 15.21 9.50 36.49 2.23
6024 6181 4.500375 CGCCTGATGATGACTTGTCATAGA 60.500 45.833 15.21 6.78 36.49 1.98
6025 6182 5.363101 GCCTGATGATGACTTGTCATAGAA 58.637 41.667 15.21 6.10 36.49 2.10
6026 6183 5.466058 GCCTGATGATGACTTGTCATAGAAG 59.534 44.000 15.21 10.66 36.49 2.85
6027 6184 5.990386 CCTGATGATGACTTGTCATAGAAGG 59.010 44.000 15.21 14.65 36.49 3.46
6028 6185 5.363101 TGATGATGACTTGTCATAGAAGGC 58.637 41.667 15.21 4.10 36.49 4.35
6029 6186 4.824479 TGATGACTTGTCATAGAAGGCA 57.176 40.909 15.21 6.40 42.69 4.75
6030 6187 5.164620 TGATGACTTGTCATAGAAGGCAA 57.835 39.130 15.21 0.00 41.81 4.52
6031 6188 5.181009 TGATGACTTGTCATAGAAGGCAAG 58.819 41.667 15.21 6.74 41.81 4.01
6032 6189 3.942829 TGACTTGTCATAGAAGGCAAGG 58.057 45.455 12.24 0.00 41.65 3.61
6033 6190 3.327757 TGACTTGTCATAGAAGGCAAGGT 59.672 43.478 12.24 0.00 41.65 3.50
6034 6191 3.679389 ACTTGTCATAGAAGGCAAGGTG 58.321 45.455 12.24 0.00 41.65 4.00
6035 6192 3.327757 ACTTGTCATAGAAGGCAAGGTGA 59.672 43.478 12.24 0.00 41.65 4.02
6036 6193 3.334583 TGTCATAGAAGGCAAGGTGAC 57.665 47.619 0.00 0.00 37.18 3.67
6037 6194 2.027192 TGTCATAGAAGGCAAGGTGACC 60.027 50.000 0.00 0.00 36.14 4.02
6038 6195 1.559682 TCATAGAAGGCAAGGTGACCC 59.440 52.381 0.00 0.00 0.00 4.46
6039 6196 0.541863 ATAGAAGGCAAGGTGACCCG 59.458 55.000 0.00 0.00 35.12 5.28
6040 6197 0.543410 TAGAAGGCAAGGTGACCCGA 60.543 55.000 0.00 0.00 35.12 5.14
6041 6198 1.201429 AGAAGGCAAGGTGACCCGAT 61.201 55.000 0.00 0.00 35.12 4.18
6042 6199 1.002134 AAGGCAAGGTGACCCGATG 60.002 57.895 0.00 0.00 35.12 3.84
6043 6200 1.488705 AAGGCAAGGTGACCCGATGA 61.489 55.000 0.00 0.00 35.12 2.92
6044 6201 1.224592 GGCAAGGTGACCCGATGAT 59.775 57.895 0.00 0.00 35.12 2.45
6045 6202 1.097547 GGCAAGGTGACCCGATGATG 61.098 60.000 0.00 0.00 35.12 3.07
6046 6203 0.107703 GCAAGGTGACCCGATGATGA 60.108 55.000 0.00 0.00 35.12 2.92
6047 6204 1.656652 CAAGGTGACCCGATGATGAC 58.343 55.000 0.00 0.00 35.12 3.06
6048 6205 1.208052 CAAGGTGACCCGATGATGACT 59.792 52.381 0.00 0.00 35.12 3.41
6049 6206 1.573108 AGGTGACCCGATGATGACTT 58.427 50.000 0.00 0.00 35.12 3.01
6050 6207 1.208052 AGGTGACCCGATGATGACTTG 59.792 52.381 0.00 0.00 35.12 3.16
6051 6208 1.066143 GGTGACCCGATGATGACTTGT 60.066 52.381 0.00 0.00 0.00 3.16
6052 6209 2.271800 GTGACCCGATGATGACTTGTC 58.728 52.381 0.00 0.00 0.00 3.18
6053 6210 1.899142 TGACCCGATGATGACTTGTCA 59.101 47.619 5.89 5.89 0.00 3.58
6054 6211 2.501316 TGACCCGATGATGACTTGTCAT 59.499 45.455 15.16 15.16 38.94 3.06
6055 6212 3.704061 TGACCCGATGATGACTTGTCATA 59.296 43.478 15.21 5.98 36.49 2.15
6056 6213 4.202151 TGACCCGATGATGACTTGTCATAG 60.202 45.833 15.21 8.12 36.49 2.23
6057 6214 3.960755 ACCCGATGATGACTTGTCATAGA 59.039 43.478 15.21 6.78 36.49 1.98
6058 6215 4.405680 ACCCGATGATGACTTGTCATAGAA 59.594 41.667 15.21 6.10 36.49 2.10
6059 6216 4.987285 CCCGATGATGACTTGTCATAGAAG 59.013 45.833 15.21 8.41 36.49 2.85
6060 6217 4.987285 CCGATGATGACTTGTCATAGAAGG 59.013 45.833 15.21 12.60 36.49 3.46
6061 6218 4.447054 CGATGATGACTTGTCATAGAAGGC 59.553 45.833 15.21 4.10 36.49 4.35
6062 6219 4.824479 TGATGACTTGTCATAGAAGGCA 57.176 40.909 15.21 6.40 42.69 4.75
6063 6220 5.164620 TGATGACTTGTCATAGAAGGCAA 57.835 39.130 15.21 0.00 41.81 4.52
6064 6221 5.181009 TGATGACTTGTCATAGAAGGCAAG 58.819 41.667 15.21 6.74 41.81 4.01
6065 6222 3.942829 TGACTTGTCATAGAAGGCAAGG 58.057 45.455 12.24 0.00 41.65 3.61
6066 6223 2.680339 GACTTGTCATAGAAGGCAAGGC 59.320 50.000 12.24 5.86 41.65 4.35
6067 6224 1.667724 CTTGTCATAGAAGGCAAGGCG 59.332 52.381 0.61 0.00 35.87 5.52
6068 6225 0.901827 TGTCATAGAAGGCAAGGCGA 59.098 50.000 0.00 0.00 0.00 5.54
6069 6226 1.291132 GTCATAGAAGGCAAGGCGAC 58.709 55.000 0.00 0.00 0.00 5.19
6094 6251 9.569122 ACAACAACCATACAAATAAGTTACTCT 57.431 29.630 0.00 0.00 0.00 3.24
6099 6256 9.877178 AACCATACAAATAAGTTACTCTCTCTG 57.123 33.333 0.00 0.00 0.00 3.35
6151 6308 8.610035 GTTCAAATAGAAAATAAGGGACGGTAG 58.390 37.037 0.00 0.00 38.13 3.18
6157 6314 1.624336 ATAAGGGACGGTAGCGCATA 58.376 50.000 15.35 1.12 0.00 3.14
6161 6318 0.460635 GGGACGGTAGCGCATACAAA 60.461 55.000 15.35 0.00 35.96 2.83
6165 6322 2.350498 GACGGTAGCGCATACAAAACAT 59.650 45.455 15.35 0.00 35.96 2.71
6201 6370 7.381323 AGATATGTTGCTTTTTCTCCCAAAAG 58.619 34.615 2.19 2.19 43.79 2.27
6211 6380 3.989787 CCCAAAAGCGGCCACCAC 61.990 66.667 2.24 0.00 0.00 4.16
6212 6381 3.989787 CCAAAAGCGGCCACCACC 61.990 66.667 2.24 0.00 0.00 4.61
6235 6404 1.985684 GCAAGCGTGGTAAAAGCAATC 59.014 47.619 0.79 0.00 35.46 2.67
6273 6443 3.920093 GAGGACCAAAGTGGCCGGG 62.920 68.421 2.18 0.00 42.67 5.73
6274 6444 4.280019 GGACCAAAGTGGCCGGGT 62.280 66.667 2.18 0.00 42.67 5.28
6275 6445 2.203437 GACCAAAGTGGCCGGGTT 60.203 61.111 2.18 0.00 42.67 4.11
6276 6446 2.520741 ACCAAAGTGGCCGGGTTG 60.521 61.111 2.18 1.31 42.67 3.77
6277 6447 3.989787 CCAAAGTGGCCGGGTTGC 61.990 66.667 2.18 0.00 0.00 4.17
6278 6448 3.222855 CAAAGTGGCCGGGTTGCA 61.223 61.111 2.18 0.00 0.00 4.08
6279 6449 3.223589 AAAGTGGCCGGGTTGCAC 61.224 61.111 2.18 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.926238 TCAAAATCGGCAAACGCAATAATT 59.074 33.333 0.00 0.00 43.86 1.40
32 33 1.451651 CAAGTCAAAATCGGCAAACGC 59.548 47.619 0.00 0.00 43.86 4.84
35 36 5.508200 AGTAACAAGTCAAAATCGGCAAA 57.492 34.783 0.00 0.00 0.00 3.68
39 40 8.169268 GTCATAGAAGTAACAAGTCAAAATCGG 58.831 37.037 0.00 0.00 0.00 4.18
64 69 6.658816 TGGAATCACATAAGCACATAACAAGT 59.341 34.615 0.00 0.00 0.00 3.16
100 108 7.626452 GCATCACAGGTTAATTAGTTTCTGTCC 60.626 40.741 8.25 0.00 33.80 4.02
107 115 6.951971 AGAGAGCATCACAGGTTAATTAGTT 58.048 36.000 0.00 0.00 37.82 2.24
199 228 1.159285 CCAAGAGCAGCAACGAATCA 58.841 50.000 0.00 0.00 0.00 2.57
217 252 5.221641 TGGCATACATACATACCTCAAGTCC 60.222 44.000 0.00 0.00 0.00 3.85
218 253 5.696724 GTGGCATACATACATACCTCAAGTC 59.303 44.000 0.00 0.00 0.00 3.01
430 479 3.376859 CGCTTATACTGGTCAAATGGCAA 59.623 43.478 0.00 0.00 0.00 4.52
451 500 2.159043 ACAGGATGCACAGGACTAATCG 60.159 50.000 0.00 0.00 42.53 3.34
459 508 6.515272 AAACTTTAATACAGGATGCACAGG 57.485 37.500 0.00 0.00 42.53 4.00
568 619 0.684535 TCTCACAACCAATGCCGAGA 59.315 50.000 0.00 0.00 38.12 4.04
569 620 1.742761 ATCTCACAACCAATGCCGAG 58.257 50.000 0.00 0.00 34.63 4.63
570 621 2.083774 GAATCTCACAACCAATGCCGA 58.916 47.619 0.00 0.00 0.00 5.54
571 622 2.086869 AGAATCTCACAACCAATGCCG 58.913 47.619 0.00 0.00 0.00 5.69
572 623 5.450965 CCATAAGAATCTCACAACCAATGCC 60.451 44.000 0.00 0.00 0.00 4.40
573 624 5.450965 CCCATAAGAATCTCACAACCAATGC 60.451 44.000 0.00 0.00 0.00 3.56
574 625 5.653769 ACCCATAAGAATCTCACAACCAATG 59.346 40.000 0.00 0.00 0.00 2.82
575 626 5.831103 ACCCATAAGAATCTCACAACCAAT 58.169 37.500 0.00 0.00 0.00 3.16
576 627 5.255397 ACCCATAAGAATCTCACAACCAA 57.745 39.130 0.00 0.00 0.00 3.67
577 628 4.927267 ACCCATAAGAATCTCACAACCA 57.073 40.909 0.00 0.00 0.00 3.67
578 629 5.710099 TGAAACCCATAAGAATCTCACAACC 59.290 40.000 0.00 0.00 0.00 3.77
579 630 6.623767 GCTGAAACCCATAAGAATCTCACAAC 60.624 42.308 0.00 0.00 0.00 3.32
580 631 5.415701 GCTGAAACCCATAAGAATCTCACAA 59.584 40.000 0.00 0.00 0.00 3.33
581 632 4.943705 GCTGAAACCCATAAGAATCTCACA 59.056 41.667 0.00 0.00 0.00 3.58
582 633 5.189180 AGCTGAAACCCATAAGAATCTCAC 58.811 41.667 0.00 0.00 0.00 3.51
583 634 5.190528 AGAGCTGAAACCCATAAGAATCTCA 59.809 40.000 0.00 0.00 0.00 3.27
584 635 5.679601 AGAGCTGAAACCCATAAGAATCTC 58.320 41.667 0.00 0.00 0.00 2.75
585 636 5.707066 AGAGCTGAAACCCATAAGAATCT 57.293 39.130 0.00 0.00 0.00 2.40
586 637 5.468409 GCTAGAGCTGAAACCCATAAGAATC 59.532 44.000 0.00 0.00 38.21 2.52
587 638 5.372373 GCTAGAGCTGAAACCCATAAGAAT 58.628 41.667 0.00 0.00 38.21 2.40
588 639 4.384208 GGCTAGAGCTGAAACCCATAAGAA 60.384 45.833 0.00 0.00 41.70 2.52
589 640 3.134804 GGCTAGAGCTGAAACCCATAAGA 59.865 47.826 0.00 0.00 41.70 2.10
590 641 3.135530 AGGCTAGAGCTGAAACCCATAAG 59.864 47.826 0.00 0.00 41.70 1.73
591 642 3.115390 AGGCTAGAGCTGAAACCCATAA 58.885 45.455 0.00 0.00 41.70 1.90
592 643 2.764269 AGGCTAGAGCTGAAACCCATA 58.236 47.619 0.00 0.00 41.70 2.74
593 644 1.589414 AGGCTAGAGCTGAAACCCAT 58.411 50.000 0.00 0.00 41.70 4.00
594 645 1.831736 GTAGGCTAGAGCTGAAACCCA 59.168 52.381 0.00 0.00 41.70 4.51
595 646 1.139256 GGTAGGCTAGAGCTGAAACCC 59.861 57.143 0.00 0.00 41.70 4.11
596 647 1.139256 GGGTAGGCTAGAGCTGAAACC 59.861 57.143 0.00 4.43 41.70 3.27
597 648 1.139256 GGGGTAGGCTAGAGCTGAAAC 59.861 57.143 0.00 0.00 41.70 2.78
598 649 1.273609 TGGGGTAGGCTAGAGCTGAAA 60.274 52.381 0.00 0.00 41.70 2.69
599 650 0.338467 TGGGGTAGGCTAGAGCTGAA 59.662 55.000 0.00 0.00 41.70 3.02
600 651 0.338467 TTGGGGTAGGCTAGAGCTGA 59.662 55.000 0.00 0.00 41.70 4.26
601 652 0.466124 GTTGGGGTAGGCTAGAGCTG 59.534 60.000 0.00 0.00 41.70 4.24
602 653 0.340208 AGTTGGGGTAGGCTAGAGCT 59.660 55.000 0.00 0.00 41.70 4.09
603 654 1.134371 CAAGTTGGGGTAGGCTAGAGC 60.134 57.143 0.00 0.00 41.14 4.09
604 655 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
605 656 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
606 657 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
607 658 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
608 659 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
617 668 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
618 669 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
619 670 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
620 671 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
621 672 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
622 673 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
623 674 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
624 675 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
625 676 3.634910 GACAACAAAGCCTTTAGTCCCAA 59.365 43.478 0.00 0.00 0.00 4.12
626 677 3.117663 AGACAACAAAGCCTTTAGTCCCA 60.118 43.478 10.93 0.00 0.00 4.37
627 678 3.487372 AGACAACAAAGCCTTTAGTCCC 58.513 45.455 10.93 0.00 0.00 4.46
628 679 4.390264 AGAGACAACAAAGCCTTTAGTCC 58.610 43.478 10.93 5.58 0.00 3.85
629 680 5.057149 TGAGAGACAACAAAGCCTTTAGTC 58.943 41.667 7.94 7.94 0.00 2.59
630 681 5.036117 TGAGAGACAACAAAGCCTTTAGT 57.964 39.130 0.00 0.00 0.00 2.24
631 682 4.083590 GCTGAGAGACAACAAAGCCTTTAG 60.084 45.833 0.00 0.00 0.00 1.85
632 683 3.815401 GCTGAGAGACAACAAAGCCTTTA 59.185 43.478 0.00 0.00 0.00 1.85
633 684 2.620585 GCTGAGAGACAACAAAGCCTTT 59.379 45.455 0.00 0.00 0.00 3.11
634 685 2.225467 GCTGAGAGACAACAAAGCCTT 58.775 47.619 0.00 0.00 0.00 4.35
635 686 1.141657 TGCTGAGAGACAACAAAGCCT 59.858 47.619 0.00 0.00 0.00 4.58
636 687 1.597742 TGCTGAGAGACAACAAAGCC 58.402 50.000 0.00 0.00 0.00 4.35
637 688 3.501445 AGAATGCTGAGAGACAACAAAGC 59.499 43.478 0.00 0.00 0.00 3.51
638 689 6.090628 GTCTAGAATGCTGAGAGACAACAAAG 59.909 42.308 0.00 0.00 37.17 2.77
639 690 5.928839 GTCTAGAATGCTGAGAGACAACAAA 59.071 40.000 0.00 0.00 37.17 2.83
640 691 5.011023 TGTCTAGAATGCTGAGAGACAACAA 59.989 40.000 2.71 0.00 42.58 2.83
641 692 4.524328 TGTCTAGAATGCTGAGAGACAACA 59.476 41.667 2.71 0.00 42.58 3.33
642 693 5.065704 TGTCTAGAATGCTGAGAGACAAC 57.934 43.478 2.71 0.00 42.58 3.32
661 712 3.060138 TCAACGACGCAACTACATTTGTC 60.060 43.478 0.00 0.00 0.00 3.18
662 713 2.867368 TCAACGACGCAACTACATTTGT 59.133 40.909 0.00 0.00 0.00 2.83
683 734 5.596772 GCTTACTAAACAGAGGAGAGAGGAT 59.403 44.000 0.00 0.00 0.00 3.24
702 753 8.822652 TTACCAAGACTAGTTTTACAGCTTAC 57.177 34.615 0.00 0.00 0.00 2.34
864 915 9.853177 AAATAGGACAGATGGAAAATAGTAAGG 57.147 33.333 0.00 0.00 0.00 2.69
891 942 7.338710 TGAAACTTGAAGTAGATAATCCTGGG 58.661 38.462 0.00 0.00 0.00 4.45
1173 1226 4.344237 CCTCCACTTGGCATTCCC 57.656 61.111 0.00 0.00 34.44 3.97
1189 1242 2.747396 TTTTGCTGACCAATCATGCC 57.253 45.000 0.00 0.00 33.22 4.40
1398 1451 8.192774 TCAAATTGATCAGCCTGATTAATGTTC 58.807 33.333 21.27 4.20 40.68 3.18
1708 1761 3.196039 AGCAGCATATCATTGTTTTGGCA 59.804 39.130 0.00 0.00 0.00 4.92
1815 1868 5.905331 TGAGGTATCAGTATTCTGGTCCAAT 59.095 40.000 0.00 0.00 41.59 3.16
1954 2007 2.165357 TCCTCAGGCAGCAGATTAGA 57.835 50.000 0.00 0.00 0.00 2.10
2149 2202 1.833630 TGTATCAGCAGAACTCCCTGG 59.166 52.381 0.00 0.00 34.82 4.45
2150 2203 3.616956 TTGTATCAGCAGAACTCCCTG 57.383 47.619 0.00 0.00 37.23 4.45
2475 2528 0.170784 CACGGTGCTGCAATGCAATA 59.829 50.000 9.92 0.00 45.12 1.90
2643 2696 1.731160 CTTCCTTCTCTTGAAGCAGCG 59.269 52.381 0.67 0.00 46.13 5.18
2767 2820 2.203470 TCCTTGCAGCACATCATCAA 57.797 45.000 0.00 0.00 0.00 2.57
2816 2869 7.974504 TCTTTGAGAAACATAGTAAGGAAGGT 58.025 34.615 0.00 0.00 0.00 3.50
2863 2916 4.577283 TGGATTTTAGTGCGGGTTATTAGC 59.423 41.667 0.00 0.00 0.00 3.09
2900 2953 6.837992 TGAAATAGCTCACACGGAAATAAAC 58.162 36.000 0.00 0.00 0.00 2.01
3014 3067 6.192044 ACAAAGGAAAGGAAAGGTTGAGTAA 58.808 36.000 0.00 0.00 0.00 2.24
3030 3083 5.319043 AGGTTCATAGACCAACAAAGGAA 57.681 39.130 0.00 0.00 42.35 3.36
3031 3084 4.993705 AGGTTCATAGACCAACAAAGGA 57.006 40.909 0.00 0.00 42.35 3.36
3032 3085 5.823045 GGATAGGTTCATAGACCAACAAAGG 59.177 44.000 0.00 0.00 42.35 3.11
3033 3086 6.653989 AGGATAGGTTCATAGACCAACAAAG 58.346 40.000 0.00 0.00 42.35 2.77
3034 3087 6.636454 AGGATAGGTTCATAGACCAACAAA 57.364 37.500 0.00 0.00 42.35 2.83
3156 3209 3.505680 ACCGAAGCTACATTTGATTTGCA 59.494 39.130 0.00 0.00 0.00 4.08
3157 3210 4.096732 ACCGAAGCTACATTTGATTTGC 57.903 40.909 0.00 0.00 0.00 3.68
3158 3211 5.354234 AGGTACCGAAGCTACATTTGATTTG 59.646 40.000 6.18 0.00 32.98 2.32
3161 3214 4.406003 AGAGGTACCGAAGCTACATTTGAT 59.594 41.667 6.18 0.00 35.60 2.57
3162 3215 3.767673 AGAGGTACCGAAGCTACATTTGA 59.232 43.478 6.18 0.00 35.60 2.69
3163 3216 3.865745 CAGAGGTACCGAAGCTACATTTG 59.134 47.826 6.18 0.00 35.60 2.32
3164 3217 3.767673 TCAGAGGTACCGAAGCTACATTT 59.232 43.478 6.18 0.00 35.60 2.32
3165 3218 3.362706 TCAGAGGTACCGAAGCTACATT 58.637 45.455 6.18 0.00 35.60 2.71
3207 3260 7.177921 TGGAAAATGCTGAATTCAGAAGATTCT 59.822 33.333 34.43 17.16 46.59 2.40
3208 3261 7.318141 TGGAAAATGCTGAATTCAGAAGATTC 58.682 34.615 34.43 28.13 46.59 2.52
3209 3262 7.039223 ACTGGAAAATGCTGAATTCAGAAGATT 60.039 33.333 34.43 23.37 46.59 2.40
3210 3263 6.436532 ACTGGAAAATGCTGAATTCAGAAGAT 59.563 34.615 34.43 20.43 46.59 2.40
3211 3264 5.771666 ACTGGAAAATGCTGAATTCAGAAGA 59.228 36.000 34.43 19.24 46.59 2.87
3212 3265 6.022163 ACTGGAAAATGCTGAATTCAGAAG 57.978 37.500 34.43 15.68 46.59 2.85
3213 3266 7.523293 TTACTGGAAAATGCTGAATTCAGAA 57.477 32.000 34.43 27.26 46.59 3.02
3214 3267 7.613022 AGATTACTGGAAAATGCTGAATTCAGA 59.387 33.333 34.43 21.02 46.59 3.27
3215 3268 7.769220 AGATTACTGGAAAATGCTGAATTCAG 58.231 34.615 27.82 27.82 46.40 3.02
3216 3269 7.707624 AGATTACTGGAAAATGCTGAATTCA 57.292 32.000 8.12 8.12 0.00 2.57
3505 3574 4.095483 CACATTTGTTATCAGGAGACCAGC 59.905 45.833 0.00 0.00 0.00 4.85
3515 3584 6.183360 ACAGGCAAGTTTCACATTTGTTATCA 60.183 34.615 0.00 0.00 0.00 2.15
3521 3590 6.913170 AGTATACAGGCAAGTTTCACATTTG 58.087 36.000 5.50 0.00 0.00 2.32
3701 3770 9.657419 CACTGGAGATTTAATATTTGCCTTTTT 57.343 29.630 0.00 0.00 0.00 1.94
3765 3834 7.112779 AGGTACTATGATTGTTAGCAGCTTTT 58.887 34.615 0.00 0.00 36.02 2.27
3820 3889 5.836705 TCACCAAATATTGAATTCAGGGGA 58.163 37.500 8.41 8.99 0.00 4.81
3941 4012 6.575244 ATTCCTGGTTGAAGGATACACATA 57.425 37.500 0.00 0.00 45.84 2.29
4019 4090 8.440059 TGTACTTGAAAGTATGAAAACTATGCG 58.560 33.333 6.21 0.00 42.88 4.73
4047 4118 3.314080 CACTTGCCGTTGAAGAACCTTAA 59.686 43.478 0.00 0.00 0.00 1.85
4245 4316 1.550976 GGTGAAGGTGCTGCTACTAGT 59.449 52.381 0.00 0.00 0.00 2.57
4283 4354 3.890147 ACCGAGGGATAGATAACACAGAC 59.110 47.826 0.00 0.00 0.00 3.51
4305 4377 4.657504 AGCAGTCCATGATAGGATTTCTGA 59.342 41.667 0.00 0.00 40.42 3.27
4345 4417 3.843422 TGGCATGGACATATTTAAGGGG 58.157 45.455 0.00 0.00 0.00 4.79
4346 4418 4.262164 GCTTGGCATGGACATATTTAAGGG 60.262 45.833 2.33 0.00 0.00 3.95
4347 4419 4.586001 AGCTTGGCATGGACATATTTAAGG 59.414 41.667 2.33 0.00 0.00 2.69
4431 4561 9.923143 CGTCTCATCCCAAGTTTATATTGTATA 57.077 33.333 0.00 0.00 0.00 1.47
4465 4595 5.246429 CCTATAACTAGTTCCAAGGGCTAGG 59.754 48.000 12.39 7.09 37.20 3.02
4468 4598 3.974642 CCCTATAACTAGTTCCAAGGGCT 59.025 47.826 25.48 1.06 0.00 5.19
4576 4709 2.768527 TCTGGTTAGATCCTGCCAAGAG 59.231 50.000 0.00 0.00 0.00 2.85
4609 4742 5.049167 GCACTGGTCATCAAAATTGAAACA 58.951 37.500 0.00 0.00 41.13 2.83
4704 4837 4.595762 AGTTACAATGTACCACTCGTGT 57.404 40.909 0.00 0.00 0.00 4.49
4715 4848 2.416431 GGTCGCGGACTAGTTACAATGT 60.416 50.000 6.13 0.00 32.47 2.71
4723 4856 0.526662 CTTTCAGGTCGCGGACTAGT 59.473 55.000 6.13 0.00 32.47 2.57
4732 4865 3.875134 ACTTAAACCACACTTTCAGGTCG 59.125 43.478 0.00 0.00 33.74 4.79
4734 4867 3.951680 CCACTTAAACCACACTTTCAGGT 59.048 43.478 0.00 0.00 37.20 4.00
4737 4870 4.883006 GGTACCACTTAAACCACACTTTCA 59.117 41.667 7.15 0.00 33.28 2.69
4796 4929 3.323115 TGGATAAACCACAGCAAATTGCA 59.677 39.130 20.82 0.00 44.68 4.08
4805 4938 4.021102 ACAGTTCCTGGATAAACCACAG 57.979 45.455 0.00 0.00 44.64 3.66
5018 5153 8.506168 ACAATGTTCTCTCAAAGTGACTTAAA 57.494 30.769 0.00 0.00 0.00 1.52
5104 5240 8.721478 TCAGTAAGTGAGCAAGCTATTTTTAAG 58.279 33.333 0.00 0.00 0.00 1.85
5105 5241 8.504005 GTCAGTAAGTGAGCAAGCTATTTTTAA 58.496 33.333 0.00 0.00 35.13 1.52
5144 5284 2.293399 GTCTTCCTGCAAACACCGAAAT 59.707 45.455 0.00 0.00 0.00 2.17
5168 5308 3.381983 ATGTCCTCGCCGTCAGCA 61.382 61.111 0.00 0.00 44.04 4.41
5171 5311 3.770040 CCCATGTCCTCGCCGTCA 61.770 66.667 0.00 0.00 0.00 4.35
5311 5454 4.880537 CCACAGGAGCGCCGCTAG 62.881 72.222 13.54 7.96 39.88 3.42
5378 5523 1.202256 GCTTTGCCGCTTATAACCCAC 60.202 52.381 0.00 0.00 0.00 4.61
5432 5577 2.665185 GCCCTTGACGACGTTGCT 60.665 61.111 0.13 0.00 0.00 3.91
5658 5812 4.974721 ACCCAAACCGCAGCCAGG 62.975 66.667 0.00 0.00 0.00 4.45
5838 5995 6.414732 CCTAACATGTAGGGTTCTGAATTCA 58.585 40.000 8.12 8.12 0.00 2.57
5855 6012 3.585732 CCACGGGGTTATATCCCTAACAT 59.414 47.826 16.89 0.00 46.27 2.71
5856 6013 2.974099 CCACGGGGTTATATCCCTAACA 59.026 50.000 16.89 0.00 46.27 2.41
5857 6014 3.690475 CCACGGGGTTATATCCCTAAC 57.310 52.381 16.89 1.99 46.27 2.34
5870 6027 2.109593 GCGGGTTATACCACGGGG 59.890 66.667 0.00 0.00 41.02 5.73
5871 6028 1.974973 AAGGCGGGTTATACCACGGG 61.975 60.000 0.00 0.00 41.02 5.28
5874 6031 2.406596 TTCAAGGCGGGTTATACCAC 57.593 50.000 0.00 0.00 41.02 4.16
5875 6032 2.356330 CCTTTCAAGGCGGGTTATACCA 60.356 50.000 0.00 0.00 38.68 3.25
5876 6033 2.294979 CCTTTCAAGGCGGGTTATACC 58.705 52.381 0.00 0.00 39.76 2.73
5878 6035 1.409101 GCCCTTTCAAGGCGGGTTATA 60.409 52.381 0.00 0.00 45.10 0.98
5879 6036 0.683179 GCCCTTTCAAGGCGGGTTAT 60.683 55.000 0.00 0.00 45.10 1.89
5880 6037 1.303806 GCCCTTTCAAGGCGGGTTA 60.304 57.895 0.00 0.00 45.10 2.85
5881 6038 2.600470 GCCCTTTCAAGGCGGGTT 60.600 61.111 0.00 0.00 45.10 4.11
5887 6044 1.228429 TGAACCGGCCCTTTCAAGG 60.228 57.895 10.59 0.00 46.06 3.61
5889 6046 1.228429 CCTGAACCGGCCCTTTCAA 60.228 57.895 13.34 0.86 31.41 2.69
5891 6048 3.062466 GCCTGAACCGGCCCTTTC 61.062 66.667 0.00 0.00 44.41 2.62
5898 6055 0.250234 TCTTGATCAGCCTGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
5899 6056 1.363744 GTCTTGATCAGCCTGAACCG 58.636 55.000 0.00 0.00 0.00 4.44
5901 6058 0.723981 GCGTCTTGATCAGCCTGAAC 59.276 55.000 0.00 0.00 0.00 3.18
5902 6059 0.391661 GGCGTCTTGATCAGCCTGAA 60.392 55.000 14.77 0.00 45.67 3.02
5904 6061 3.805267 GGCGTCTTGATCAGCCTG 58.195 61.111 14.77 0.43 45.67 4.85
5907 6064 1.427592 GCTCTGGCGTCTTGATCAGC 61.428 60.000 0.00 0.00 0.00 4.26
5908 6065 0.809241 GGCTCTGGCGTCTTGATCAG 60.809 60.000 0.00 0.00 39.81 2.90
5911 6068 1.220206 CTGGCTCTGGCGTCTTGAT 59.780 57.895 0.00 0.00 39.81 2.57
5912 6069 1.881903 CTCTGGCTCTGGCGTCTTGA 61.882 60.000 0.00 0.00 39.81 3.02
5913 6070 1.447489 CTCTGGCTCTGGCGTCTTG 60.447 63.158 0.00 0.00 39.81 3.02
5914 6071 2.654079 CCTCTGGCTCTGGCGTCTT 61.654 63.158 0.00 0.00 39.81 3.01
5915 6072 3.073735 CCTCTGGCTCTGGCGTCT 61.074 66.667 0.00 0.00 39.81 4.18
5916 6073 4.154347 CCCTCTGGCTCTGGCGTC 62.154 72.222 0.00 0.00 39.81 5.19
5926 6083 3.984193 CTTTGAGCCGCCCCTCTGG 62.984 68.421 0.67 0.00 33.02 3.86
5927 6084 2.262774 ATCTTTGAGCCGCCCCTCTG 62.263 60.000 0.67 0.00 33.02 3.35
5928 6085 1.997874 ATCTTTGAGCCGCCCCTCT 60.998 57.895 0.67 0.00 33.02 3.69
5929 6086 1.821332 CATCTTTGAGCCGCCCCTC 60.821 63.158 0.00 0.00 0.00 4.30
5930 6087 2.273449 CATCTTTGAGCCGCCCCT 59.727 61.111 0.00 0.00 0.00 4.79
5931 6088 2.830370 CCATCTTTGAGCCGCCCC 60.830 66.667 0.00 0.00 0.00 5.80
5932 6089 2.830370 CCCATCTTTGAGCCGCCC 60.830 66.667 0.00 0.00 0.00 6.13
5933 6090 3.521796 GCCCATCTTTGAGCCGCC 61.522 66.667 0.00 0.00 0.00 6.13
5934 6091 3.521796 GGCCCATCTTTGAGCCGC 61.522 66.667 0.00 0.00 35.30 6.53
5936 6093 2.830370 CCGGCCCATCTTTGAGCC 60.830 66.667 0.00 0.00 42.18 4.70
5937 6094 3.521796 GCCGGCCCATCTTTGAGC 61.522 66.667 18.11 0.00 0.00 4.26
5938 6095 0.107214 TAAGCCGGCCCATCTTTGAG 60.107 55.000 26.15 0.00 0.00 3.02
5939 6096 0.329931 TTAAGCCGGCCCATCTTTGA 59.670 50.000 26.15 3.09 0.00 2.69
5940 6097 0.740737 CTTAAGCCGGCCCATCTTTG 59.259 55.000 26.15 3.34 0.00 2.77
5941 6098 0.395724 CCTTAAGCCGGCCCATCTTT 60.396 55.000 26.15 12.63 0.00 2.52
5942 6099 1.227383 CCTTAAGCCGGCCCATCTT 59.773 57.895 26.15 13.46 0.00 2.40
5943 6100 2.919043 CCTTAAGCCGGCCCATCT 59.081 61.111 26.15 0.00 0.00 2.90
5944 6101 2.907407 GCCTTAAGCCGGCCCATC 60.907 66.667 26.15 3.80 41.73 3.51
5961 6118 2.045926 CCGTCTTCTGGCCTTGGG 60.046 66.667 3.32 0.00 0.00 4.12
5968 6125 3.197790 CCGCATGCCGTCTTCTGG 61.198 66.667 13.15 0.23 34.38 3.86
5969 6126 3.869272 GCCGCATGCCGTCTTCTG 61.869 66.667 13.15 0.00 34.38 3.02
5978 6135 2.665008 TACATCTCCAGGCCGCATGC 62.665 60.000 7.91 7.91 40.16 4.06
5979 6136 0.179048 TTACATCTCCAGGCCGCATG 60.179 55.000 0.00 0.00 0.00 4.06
5980 6137 0.107456 CTTACATCTCCAGGCCGCAT 59.893 55.000 0.00 0.00 0.00 4.73
5981 6138 1.522092 CTTACATCTCCAGGCCGCA 59.478 57.895 0.00 0.00 0.00 5.69
5982 6139 1.889573 GCTTACATCTCCAGGCCGC 60.890 63.158 0.00 0.00 0.00 6.53
5983 6140 1.227674 GGCTTACATCTCCAGGCCG 60.228 63.158 0.00 0.00 0.00 6.13
5984 6141 1.227674 CGGCTTACATCTCCAGGCC 60.228 63.158 0.00 0.00 36.60 5.19
5985 6142 1.889573 GCGGCTTACATCTCCAGGC 60.890 63.158 0.00 0.00 0.00 4.85
5986 6143 1.227674 GGCGGCTTACATCTCCAGG 60.228 63.158 0.00 0.00 0.00 4.45
5987 6144 0.531532 CAGGCGGCTTACATCTCCAG 60.532 60.000 9.66 0.00 0.00 3.86
5988 6145 0.975556 TCAGGCGGCTTACATCTCCA 60.976 55.000 9.66 0.00 0.00 3.86
5989 6146 0.394565 ATCAGGCGGCTTACATCTCC 59.605 55.000 9.66 0.00 0.00 3.71
5990 6147 1.069204 TCATCAGGCGGCTTACATCTC 59.931 52.381 9.66 0.00 0.00 2.75
5991 6148 1.123077 TCATCAGGCGGCTTACATCT 58.877 50.000 9.66 0.00 0.00 2.90
5992 6149 1.802960 CATCATCAGGCGGCTTACATC 59.197 52.381 9.66 0.00 0.00 3.06
5993 6150 1.417517 TCATCATCAGGCGGCTTACAT 59.582 47.619 9.66 0.00 0.00 2.29
5994 6151 0.829990 TCATCATCAGGCGGCTTACA 59.170 50.000 9.66 0.00 0.00 2.41
5995 6152 1.202580 AGTCATCATCAGGCGGCTTAC 60.203 52.381 9.66 0.00 0.00 2.34
5996 6153 1.123077 AGTCATCATCAGGCGGCTTA 58.877 50.000 9.66 0.33 0.00 3.09
5997 6154 0.254178 AAGTCATCATCAGGCGGCTT 59.746 50.000 9.66 0.00 0.00 4.35
5998 6155 0.463295 CAAGTCATCATCAGGCGGCT 60.463 55.000 5.25 5.25 0.00 5.52
5999 6156 0.745845 ACAAGTCATCATCAGGCGGC 60.746 55.000 0.00 0.00 0.00 6.53
6000 6157 1.293924 GACAAGTCATCATCAGGCGG 58.706 55.000 0.00 0.00 0.00 6.13
6001 6158 2.014335 TGACAAGTCATCATCAGGCG 57.986 50.000 0.00 0.00 34.14 5.52
6002 6159 4.953667 TCTATGACAAGTCATCATCAGGC 58.046 43.478 18.16 0.00 46.57 4.85
6003 6160 5.990386 CCTTCTATGACAAGTCATCATCAGG 59.010 44.000 18.16 14.71 46.57 3.86
6004 6161 5.466058 GCCTTCTATGACAAGTCATCATCAG 59.534 44.000 18.16 10.81 46.57 2.90
6005 6162 5.104817 TGCCTTCTATGACAAGTCATCATCA 60.105 40.000 18.16 7.43 46.57 3.07
6006 6163 5.363101 TGCCTTCTATGACAAGTCATCATC 58.637 41.667 18.16 5.30 46.57 2.92
6007 6164 5.363562 TGCCTTCTATGACAAGTCATCAT 57.636 39.130 18.16 1.09 46.57 2.45
6008 6165 4.824479 TGCCTTCTATGACAAGTCATCA 57.176 40.909 18.16 7.32 46.57 3.07
6009 6166 4.574013 CCTTGCCTTCTATGACAAGTCATC 59.426 45.833 18.16 4.93 46.57 2.92
6011 6168 3.327757 ACCTTGCCTTCTATGACAAGTCA 59.672 43.478 5.24 5.24 44.59 3.41
6012 6169 3.686726 CACCTTGCCTTCTATGACAAGTC 59.313 47.826 0.00 0.00 38.24 3.01
6013 6170 3.327757 TCACCTTGCCTTCTATGACAAGT 59.672 43.478 0.00 0.00 38.24 3.16
6014 6171 3.686726 GTCACCTTGCCTTCTATGACAAG 59.313 47.826 0.00 0.00 39.35 3.16
6015 6172 3.559171 GGTCACCTTGCCTTCTATGACAA 60.559 47.826 4.73 0.00 38.54 3.18
6016 6173 2.027192 GGTCACCTTGCCTTCTATGACA 60.027 50.000 4.73 0.00 38.54 3.58
6017 6174 2.633488 GGTCACCTTGCCTTCTATGAC 58.367 52.381 0.00 0.00 36.55 3.06
6018 6175 1.559682 GGGTCACCTTGCCTTCTATGA 59.440 52.381 0.00 0.00 0.00 2.15
6019 6176 1.743772 CGGGTCACCTTGCCTTCTATG 60.744 57.143 0.00 0.00 33.28 2.23
6020 6177 0.541863 CGGGTCACCTTGCCTTCTAT 59.458 55.000 0.00 0.00 33.28 1.98
6021 6178 0.543410 TCGGGTCACCTTGCCTTCTA 60.543 55.000 0.00 0.00 33.28 2.10
6022 6179 1.201429 ATCGGGTCACCTTGCCTTCT 61.201 55.000 0.00 0.00 33.28 2.85
6023 6180 1.026718 CATCGGGTCACCTTGCCTTC 61.027 60.000 0.00 0.00 33.28 3.46
6024 6181 1.002134 CATCGGGTCACCTTGCCTT 60.002 57.895 0.00 0.00 33.28 4.35
6025 6182 1.274703 ATCATCGGGTCACCTTGCCT 61.275 55.000 0.00 0.00 33.28 4.75
6026 6183 1.097547 CATCATCGGGTCACCTTGCC 61.098 60.000 0.00 0.00 33.28 4.52
6027 6184 0.107703 TCATCATCGGGTCACCTTGC 60.108 55.000 0.00 0.00 33.28 4.01
6028 6185 1.208052 AGTCATCATCGGGTCACCTTG 59.792 52.381 0.00 0.00 33.28 3.61
6029 6186 1.573108 AGTCATCATCGGGTCACCTT 58.427 50.000 0.00 0.00 33.28 3.50
6030 6187 1.208052 CAAGTCATCATCGGGTCACCT 59.792 52.381 0.00 0.00 33.28 4.00
6031 6188 1.066143 ACAAGTCATCATCGGGTCACC 60.066 52.381 0.00 0.00 0.00 4.02
6032 6189 2.271800 GACAAGTCATCATCGGGTCAC 58.728 52.381 0.00 0.00 0.00 3.67
6033 6190 1.899142 TGACAAGTCATCATCGGGTCA 59.101 47.619 0.00 0.00 34.14 4.02
6034 6191 2.672961 TGACAAGTCATCATCGGGTC 57.327 50.000 0.00 0.00 34.14 4.46
6035 6192 3.960755 TCTATGACAAGTCATCATCGGGT 59.039 43.478 18.16 0.00 46.57 5.28
6036 6193 4.590850 TCTATGACAAGTCATCATCGGG 57.409 45.455 18.16 4.95 46.57 5.14
6037 6194 4.987285 CCTTCTATGACAAGTCATCATCGG 59.013 45.833 18.16 11.54 46.57 4.18
6038 6195 4.447054 GCCTTCTATGACAAGTCATCATCG 59.553 45.833 18.16 7.05 46.57 3.84
6039 6196 5.363101 TGCCTTCTATGACAAGTCATCATC 58.637 41.667 18.16 5.30 46.57 2.92
6040 6197 5.363562 TGCCTTCTATGACAAGTCATCAT 57.636 39.130 18.16 1.09 46.57 2.45
6041 6198 4.824479 TGCCTTCTATGACAAGTCATCA 57.176 40.909 18.16 7.32 46.57 3.07
6042 6199 4.574013 CCTTGCCTTCTATGACAAGTCATC 59.426 45.833 18.16 4.93 46.57 2.92
6044 6201 3.869912 GCCTTGCCTTCTATGACAAGTCA 60.870 47.826 5.24 5.24 44.59 3.41
6045 6202 2.680339 GCCTTGCCTTCTATGACAAGTC 59.320 50.000 0.00 0.00 38.24 3.01
6046 6203 2.716217 GCCTTGCCTTCTATGACAAGT 58.284 47.619 0.00 0.00 38.24 3.16
6047 6204 1.667724 CGCCTTGCCTTCTATGACAAG 59.332 52.381 0.00 0.00 39.35 3.16
6048 6205 1.277842 TCGCCTTGCCTTCTATGACAA 59.722 47.619 0.00 0.00 0.00 3.18
6049 6206 0.901827 TCGCCTTGCCTTCTATGACA 59.098 50.000 0.00 0.00 0.00 3.58
6050 6207 1.291132 GTCGCCTTGCCTTCTATGAC 58.709 55.000 0.00 0.00 0.00 3.06
6051 6208 0.901827 TGTCGCCTTGCCTTCTATGA 59.098 50.000 0.00 0.00 0.00 2.15
6052 6209 1.398390 GTTGTCGCCTTGCCTTCTATG 59.602 52.381 0.00 0.00 0.00 2.23
6053 6210 1.003118 TGTTGTCGCCTTGCCTTCTAT 59.997 47.619 0.00 0.00 0.00 1.98
6054 6211 0.394938 TGTTGTCGCCTTGCCTTCTA 59.605 50.000 0.00 0.00 0.00 2.10
6055 6212 0.465460 TTGTTGTCGCCTTGCCTTCT 60.465 50.000 0.00 0.00 0.00 2.85
6056 6213 0.317854 GTTGTTGTCGCCTTGCCTTC 60.318 55.000 0.00 0.00 0.00 3.46
6057 6214 1.733526 GTTGTTGTCGCCTTGCCTT 59.266 52.632 0.00 0.00 0.00 4.35
6058 6215 2.193536 GGTTGTTGTCGCCTTGCCT 61.194 57.895 0.00 0.00 0.00 4.75
6059 6216 1.805428 ATGGTTGTTGTCGCCTTGCC 61.805 55.000 0.00 0.00 0.00 4.52
6060 6217 0.878416 TATGGTTGTTGTCGCCTTGC 59.122 50.000 0.00 0.00 0.00 4.01
6061 6218 1.876799 TGTATGGTTGTTGTCGCCTTG 59.123 47.619 0.00 0.00 0.00 3.61
6062 6219 2.264005 TGTATGGTTGTTGTCGCCTT 57.736 45.000 0.00 0.00 0.00 4.35
6063 6220 2.264005 TTGTATGGTTGTTGTCGCCT 57.736 45.000 0.00 0.00 0.00 5.52
6064 6221 3.569250 ATTTGTATGGTTGTTGTCGCC 57.431 42.857 0.00 0.00 0.00 5.54
6065 6222 5.695818 ACTTATTTGTATGGTTGTTGTCGC 58.304 37.500 0.00 0.00 0.00 5.19
6066 6223 8.500773 AGTAACTTATTTGTATGGTTGTTGTCG 58.499 33.333 0.00 0.00 0.00 4.35
6067 6224 9.821662 GAGTAACTTATTTGTATGGTTGTTGTC 57.178 33.333 0.00 0.00 0.00 3.18
6068 6225 9.569122 AGAGTAACTTATTTGTATGGTTGTTGT 57.431 29.630 0.00 0.00 0.00 3.32
6094 6251 7.147897 ACCACGACACTTAATATGAATCAGAGA 60.148 37.037 0.00 0.00 0.00 3.10
6099 6256 9.916397 CTAAAACCACGACACTTAATATGAATC 57.084 33.333 0.00 0.00 0.00 2.52
6102 6259 8.836268 AACTAAAACCACGACACTTAATATGA 57.164 30.769 0.00 0.00 0.00 2.15
6111 6268 7.181143 TCTATTTGAACTAAAACCACGACAC 57.819 36.000 0.00 0.00 0.00 3.67
6143 6300 1.061566 GTTTTGTATGCGCTACCGTCC 59.938 52.381 9.73 0.00 36.67 4.79
6151 6308 7.406553 TCTTCTATTACATGTTTTGTATGCGC 58.593 34.615 2.30 0.00 40.46 6.09
6169 6326 9.336171 GGAGAAAAAGCAACATATCTCTTCTAT 57.664 33.333 0.00 0.00 34.98 1.98
6176 6333 6.916360 TTTGGGAGAAAAAGCAACATATCT 57.084 33.333 0.00 0.00 0.00 1.98
6194 6351 3.989787 GTGGTGGCCGCTTTTGGG 61.990 66.667 17.49 0.00 0.00 4.12
6211 6380 2.195123 CTTTTACCACGCTTGCCGGG 62.195 60.000 2.18 0.00 42.52 5.73
6212 6381 1.209127 CTTTTACCACGCTTGCCGG 59.791 57.895 0.00 0.00 42.52 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.