Multiple sequence alignment - TraesCS2A01G021600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G021600 chr2A 100.000 4042 0 0 1 4042 10372785 10376826 0.000000e+00 7465.0
1 TraesCS2A01G021600 chr2A 79.039 1956 286 64 1658 3532 40341667 40339755 0.000000e+00 1227.0
2 TraesCS2A01G021600 chr2A 77.097 1502 272 54 1619 3054 10198912 10200407 0.000000e+00 802.0
3 TraesCS2A01G021600 chr2A 86.057 667 80 9 889 1554 20502505 20503159 0.000000e+00 704.0
4 TraesCS2A01G021600 chr2A 77.715 1234 212 39 1619 2798 20503203 20504427 0.000000e+00 697.0
5 TraesCS2A01G021600 chr2A 81.973 821 128 14 743 1554 10198059 10198868 0.000000e+00 678.0
6 TraesCS2A01G021600 chr2A 83.402 729 109 4 1781 2506 9778055 9778774 0.000000e+00 665.0
7 TraesCS2A01G021600 chr2A 82.312 718 116 3 1781 2495 9201811 9201102 2.670000e-171 612.0
8 TraesCS2A01G021600 chr2A 81.764 669 97 13 2401 3049 9200996 9200333 1.650000e-148 536.0
9 TraesCS2A01G021600 chr2A 78.604 888 129 32 2401 3250 10382981 10382117 7.690000e-147 531.0
10 TraesCS2A01G021600 chr2A 82.624 564 73 13 2506 3049 9778900 9779458 3.660000e-130 475.0
11 TraesCS2A01G021600 chr2A 92.373 118 8 1 3627 3744 311190326 311190210 2.500000e-37 167.0
12 TraesCS2A01G021600 chr2A 91.597 119 9 1 3626 3744 737466368 737466251 3.230000e-36 163.0
13 TraesCS2A01G021600 chr2A 87.879 99 10 2 3530 3626 10381566 10381468 9.180000e-22 115.0
14 TraesCS2A01G021600 chr2B 83.449 2308 310 44 443 2714 13482009 13479738 0.000000e+00 2080.0
15 TraesCS2A01G021600 chr2B 87.889 1156 116 17 443 1589 13734529 13735669 0.000000e+00 1338.0
16 TraesCS2A01G021600 chr2B 80.804 1568 235 53 1541 3054 13735660 13737215 0.000000e+00 1168.0
17 TraesCS2A01G021600 chr2B 76.077 1463 278 51 1658 3054 13494277 13492821 0.000000e+00 697.0
18 TraesCS2A01G021600 chr2B 80.764 811 132 15 749 1554 13495151 13494360 2.670000e-171 612.0
19 TraesCS2A01G021600 chr2B 80.000 830 133 22 743 1554 31424344 31423530 2.090000e-162 582.0
20 TraesCS2A01G021600 chr2B 75.513 1266 251 38 1783 3002 31423310 31422058 2.110000e-157 566.0
21 TraesCS2A01G021600 chr2B 85.510 559 49 14 2788 3342 13479739 13479209 4.560000e-154 555.0
22 TraesCS2A01G021600 chr2B 94.191 241 12 1 3388 3626 13479208 13478968 2.300000e-97 366.0
23 TraesCS2A01G021600 chr2B 85.308 211 31 0 1606 1816 13433813 13433603 6.800000e-53 219.0
24 TraesCS2A01G021600 chr2B 84.416 154 20 2 25 174 756711810 756711963 9.050000e-32 148.0
25 TraesCS2A01G021600 chr2B 82.692 156 17 6 3377 3532 59223585 59223730 3.280000e-26 130.0
26 TraesCS2A01G021600 chr2D 79.506 1942 275 63 1658 3532 36434796 36432911 0.000000e+00 1267.0
27 TraesCS2A01G021600 chr2D 93.671 711 41 2 844 1554 10025078 10024372 0.000000e+00 1061.0
28 TraesCS2A01G021600 chr2D 76.298 1502 281 53 1619 3054 10097493 10098985 0.000000e+00 732.0
29 TraesCS2A01G021600 chr2D 76.219 1497 285 45 1622 3054 10024325 10022836 0.000000e+00 726.0
30 TraesCS2A01G021600 chr2D 77.715 1234 212 39 1619 2798 19462769 19463993 0.000000e+00 697.0
31 TraesCS2A01G021600 chr2D 89.689 514 53 0 1041 1554 19462212 19462725 0.000000e+00 656.0
32 TraesCS2A01G021600 chr2D 81.959 776 120 13 782 1554 10096691 10097449 1.220000e-179 640.0
33 TraesCS2A01G021600 chr2D 85.809 606 64 7 7 607 10027682 10027094 1.230000e-174 623.0
34 TraesCS2A01G021600 chr2D 75.654 1261 258 29 1783 3002 19581020 19582272 2.090000e-162 582.0
35 TraesCS2A01G021600 chr2D 79.447 832 137 24 743 1554 19579983 19580800 3.530000e-155 558.0
36 TraesCS2A01G021600 chr2D 88.424 311 22 2 3740 4036 589701007 589701317 2.970000e-96 363.0
37 TraesCS2A01G021600 chr2D 87.898 314 17 8 3740 4035 642038860 642038550 2.310000e-92 350.0
38 TraesCS2A01G021600 chr2D 90.435 230 16 3 622 851 10025567 10025344 8.490000e-77 298.0
39 TraesCS2A01G021600 chr7A 93.603 297 17 1 3740 4034 402042864 402043160 3.710000e-120 442.0
40 TraesCS2A01G021600 chr7A 88.215 297 32 3 3740 4034 113436815 113436520 6.430000e-93 351.0
41 TraesCS2A01G021600 chr7A 91.667 120 10 0 3625 3744 629799495 629799376 2.500000e-37 167.0
42 TraesCS2A01G021600 chr7A 86.184 152 17 2 25 172 125488218 125488067 1.160000e-35 161.0
43 TraesCS2A01G021600 chr7A 81.395 129 24 0 1263 1391 157169286 157169414 5.530000e-19 106.0
44 TraesCS2A01G021600 chr1D 92.384 302 22 1 3736 4037 6520931 6520631 2.890000e-116 429.0
45 TraesCS2A01G021600 chr1D 93.220 118 8 0 3627 3744 33868585 33868702 1.490000e-39 174.0
46 TraesCS2A01G021600 chr7D 89.666 329 18 4 3725 4038 46912945 46913272 4.860000e-109 405.0
47 TraesCS2A01G021600 chr7D 88.365 318 19 9 3740 4039 29045024 29045341 2.300000e-97 366.0
48 TraesCS2A01G021600 chr7D 87.948 307 23 2 3741 4033 565485287 565484981 2.310000e-92 350.0
49 TraesCS2A01G021600 chr7D 82.171 129 23 0 1263 1391 155308972 155309100 1.190000e-20 111.0
50 TraesCS2A01G021600 chr7D 86.747 83 11 0 1267 1349 616768592 616768510 4.300000e-15 93.5
51 TraesCS2A01G021600 chr6D 89.677 310 18 3 3740 4036 143968758 143968450 2.280000e-102 383.0
52 TraesCS2A01G021600 chr6D 87.419 310 16 6 3736 4031 353212078 353211778 6.470000e-88 335.0
53 TraesCS2A01G021600 chr6D 90.040 251 11 4 3740 3976 18444701 18444951 3.030000e-81 313.0
54 TraesCS2A01G021600 chr6D 91.597 119 9 1 3626 3744 311580247 311580130 3.230000e-36 163.0
55 TraesCS2A01G021600 chr6B 87.119 295 30 3 3736 4026 361860411 361860121 1.080000e-85 327.0
56 TraesCS2A01G021600 chr6B 91.525 118 9 1 3627 3744 696281549 696281433 1.160000e-35 161.0
57 TraesCS2A01G021600 chr3A 86.218 312 22 11 3731 4030 673096493 673096795 6.520000e-83 318.0
58 TraesCS2A01G021600 chr3B 91.045 134 12 0 3611 3744 570061908 570061775 8.920000e-42 182.0
59 TraesCS2A01G021600 chr1B 93.277 119 8 0 3626 3744 301760671 301760789 4.150000e-40 176.0
60 TraesCS2A01G021600 chr6A 91.667 120 7 2 3615 3732 2350488 2350606 3.230000e-36 163.0
61 TraesCS2A01G021600 chr7B 77.301 163 35 2 1267 1428 710545359 710545198 1.200000e-15 95.3
62 TraesCS2A01G021600 chr7B 77.301 163 35 2 1267 1428 710600815 710600654 1.200000e-15 95.3
63 TraesCS2A01G021600 chr7B 77.301 163 35 2 1267 1428 710608388 710608227 1.200000e-15 95.3
64 TraesCS2A01G021600 chrUn 72.414 290 66 13 1273 1555 12259605 12259887 3.350000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G021600 chr2A 10372785 10376826 4041 False 7465.000000 7465 100.000000 1 4042 1 chr2A.!!$F1 4041
1 TraesCS2A01G021600 chr2A 40339755 40341667 1912 True 1227.000000 1227 79.039000 1658 3532 1 chr2A.!!$R1 1874
2 TraesCS2A01G021600 chr2A 10198059 10200407 2348 False 740.000000 802 79.535000 743 3054 2 chr2A.!!$F3 2311
3 TraesCS2A01G021600 chr2A 20502505 20504427 1922 False 700.500000 704 81.886000 889 2798 2 chr2A.!!$F4 1909
4 TraesCS2A01G021600 chr2A 9200333 9201811 1478 True 574.000000 612 82.038000 1781 3049 2 chr2A.!!$R4 1268
5 TraesCS2A01G021600 chr2A 9778055 9779458 1403 False 570.000000 665 83.013000 1781 3049 2 chr2A.!!$F2 1268
6 TraesCS2A01G021600 chr2A 10381468 10382981 1513 True 323.000000 531 83.241500 2401 3626 2 chr2A.!!$R5 1225
7 TraesCS2A01G021600 chr2B 13734529 13737215 2686 False 1253.000000 1338 84.346500 443 3054 2 chr2B.!!$F3 2611
8 TraesCS2A01G021600 chr2B 13478968 13482009 3041 True 1000.333333 2080 87.716667 443 3626 3 chr2B.!!$R2 3183
9 TraesCS2A01G021600 chr2B 13492821 13495151 2330 True 654.500000 697 78.420500 749 3054 2 chr2B.!!$R3 2305
10 TraesCS2A01G021600 chr2B 31422058 31424344 2286 True 574.000000 582 77.756500 743 3002 2 chr2B.!!$R4 2259
11 TraesCS2A01G021600 chr2D 36432911 36434796 1885 True 1267.000000 1267 79.506000 1658 3532 1 chr2D.!!$R1 1874
12 TraesCS2A01G021600 chr2D 10096691 10098985 2294 False 686.000000 732 79.128500 782 3054 2 chr2D.!!$F2 2272
13 TraesCS2A01G021600 chr2D 10022836 10027682 4846 True 677.000000 1061 86.533500 7 3054 4 chr2D.!!$R3 3047
14 TraesCS2A01G021600 chr2D 19462212 19463993 1781 False 676.500000 697 83.702000 1041 2798 2 chr2D.!!$F3 1757
15 TraesCS2A01G021600 chr2D 19579983 19582272 2289 False 570.000000 582 77.550500 743 3002 2 chr2D.!!$F4 2259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
446 452 0.173481 GATGTGAGTGCTGCCGAGTA 59.827 55.0 0.0 0.0 0.0 2.59 F
1391 3196 0.178995 TGCTGATCCTTGTGGTGCAA 60.179 50.0 0.0 0.0 35.5 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 4284 0.179045 CCCCATTTAGTCCTCCGCAG 60.179 60.0 0.0 0.0 0.0 5.18 R
3339 5739 0.110295 ATACTGCACTGCCCACAACA 59.890 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.459337 GGACCAAGGGAGTAAATGACAAAG 59.541 45.833 0.00 0.00 0.00 2.77
37 38 4.827284 ACCAAGGGAGTAAATGACAAAGTG 59.173 41.667 0.00 0.00 0.00 3.16
38 39 5.070001 CCAAGGGAGTAAATGACAAAGTGA 58.930 41.667 0.00 0.00 0.00 3.41
44 45 5.940470 GGAGTAAATGACAAAGTGACCATCT 59.060 40.000 0.00 0.00 0.00 2.90
47 48 7.106239 AGTAAATGACAAAGTGACCATCTAGG 58.894 38.462 0.00 0.00 45.67 3.02
62 63 4.459337 CCATCTAGGAAAGGAACCAAACAC 59.541 45.833 0.00 0.00 41.22 3.32
70 71 3.525800 AGGAACCAAACACATAAGCCT 57.474 42.857 0.00 0.00 0.00 4.58
73 74 4.288626 AGGAACCAAACACATAAGCCTAGA 59.711 41.667 0.00 0.00 0.00 2.43
78 79 4.142600 CCAAACACATAAGCCTAGACAAGC 60.143 45.833 0.00 0.00 0.00 4.01
84 85 1.068121 AAGCCTAGACAAGCCTGGTT 58.932 50.000 0.00 0.00 0.00 3.67
86 87 2.266279 AGCCTAGACAAGCCTGGTTAA 58.734 47.619 0.00 0.00 0.00 2.01
97 98 2.297315 AGCCTGGTTAAGCAGAAAAAGC 59.703 45.455 31.19 24.54 0.00 3.51
98 99 2.297315 GCCTGGTTAAGCAGAAAAAGCT 59.703 45.455 31.19 0.00 45.97 3.74
99 100 3.612717 GCCTGGTTAAGCAGAAAAAGCTC 60.613 47.826 31.19 9.35 42.53 4.09
100 101 3.569701 CCTGGTTAAGCAGAAAAAGCTCA 59.430 43.478 31.19 0.00 42.53 4.26
101 102 4.540824 CTGGTTAAGCAGAAAAAGCTCAC 58.459 43.478 26.83 0.00 42.53 3.51
102 103 3.317993 TGGTTAAGCAGAAAAAGCTCACC 59.682 43.478 2.54 0.00 42.53 4.02
103 104 3.317993 GGTTAAGCAGAAAAAGCTCACCA 59.682 43.478 0.00 0.00 42.53 4.17
104 105 4.021981 GGTTAAGCAGAAAAAGCTCACCAT 60.022 41.667 0.00 0.00 42.53 3.55
105 106 3.930634 AAGCAGAAAAAGCTCACCATC 57.069 42.857 0.00 0.00 42.53 3.51
106 107 3.151912 AGCAGAAAAAGCTCACCATCT 57.848 42.857 0.00 0.00 38.01 2.90
111 112 1.831580 AAAAGCTCACCATCTCAGGC 58.168 50.000 0.00 0.00 0.00 4.85
118 119 3.204526 CTCACCATCTCAGGCTCAATTC 58.795 50.000 0.00 0.00 0.00 2.17
133 134 2.887783 TCAATTCAGGCAGCCGTTTTTA 59.112 40.909 5.55 0.00 0.00 1.52
134 135 2.986479 CAATTCAGGCAGCCGTTTTTAC 59.014 45.455 5.55 0.00 0.00 2.01
157 162 4.065088 GCACAATGTTCAGGACTCTAACA 58.935 43.478 0.00 0.00 37.51 2.41
166 172 1.351350 AGGACTCTAACAAACAGCCCC 59.649 52.381 0.00 0.00 0.00 5.80
172 178 4.258543 CTCTAACAAACAGCCCCGAAATA 58.741 43.478 0.00 0.00 0.00 1.40
192 198 1.219213 ACCCAAATCCCAAACTCCACA 59.781 47.619 0.00 0.00 0.00 4.17
210 216 4.580167 TCCACAGTTTTCCAATCTGTTCTG 59.420 41.667 0.00 0.00 39.89 3.02
214 220 3.005155 AGTTTTCCAATCTGTTCTGCTGC 59.995 43.478 0.00 0.00 0.00 5.25
265 271 4.473520 CGGCGCCTCCTGTCCATT 62.474 66.667 26.68 0.00 0.00 3.16
282 288 2.869503 ATTGTTAGGACCAGCCGCCG 62.870 60.000 0.00 0.00 43.43 6.46
306 312 1.134699 CGACCACCTGCATCATGTAGT 60.135 52.381 1.72 0.00 0.00 2.73
315 321 4.041567 CCTGCATCATGTAGTTACCCCATA 59.958 45.833 1.72 0.00 0.00 2.74
404 410 3.148279 CCGGGGTCTCCTTCTCCG 61.148 72.222 0.00 0.00 40.32 4.63
427 433 4.111016 CATGCCCACTGTGCTGCG 62.111 66.667 1.29 0.00 0.00 5.18
441 447 2.743538 TGCGATGTGAGTGCTGCC 60.744 61.111 0.00 0.00 0.00 4.85
446 452 0.173481 GATGTGAGTGCTGCCGAGTA 59.827 55.000 0.00 0.00 0.00 2.59
461 467 4.650588 TGCCGAGTAGCCTTATTTAACCTA 59.349 41.667 0.00 0.00 0.00 3.08
462 468 5.129155 TGCCGAGTAGCCTTATTTAACCTAA 59.871 40.000 0.00 0.00 0.00 2.69
480 486 4.881850 ACCTAAGGATTTTTGCATAGGACG 59.118 41.667 11.73 0.00 35.12 4.79
535 541 3.003480 GTCTGAACCTGCTACCACATTC 58.997 50.000 0.00 0.00 0.00 2.67
539 545 1.267121 ACCTGCTACCACATTCGTCT 58.733 50.000 0.00 0.00 0.00 4.18
540 546 1.623811 ACCTGCTACCACATTCGTCTT 59.376 47.619 0.00 0.00 0.00 3.01
610 616 9.174166 TGATCGAATGCAGCTTATATACTACTA 57.826 33.333 0.00 0.00 0.00 1.82
612 618 9.958234 ATCGAATGCAGCTTATATACTACTATG 57.042 33.333 0.00 0.00 0.00 2.23
628 2144 6.427441 ACTACTATGATGGTCTCAACTCTCA 58.573 40.000 0.00 0.00 37.44 3.27
629 2145 7.066142 ACTACTATGATGGTCTCAACTCTCAT 58.934 38.462 0.00 0.00 37.44 2.90
683 2202 6.898041 TGCACATGTTTGAGACTGTATTTAC 58.102 36.000 0.00 0.00 0.00 2.01
699 2218 7.710907 ACTGTATTTACGCACATAATCTCATGT 59.289 33.333 0.00 0.00 39.76 3.21
718 2237 3.642705 TGTGATTCCTCATCGCTTATCG 58.357 45.455 0.00 0.00 42.25 2.92
732 2251 8.922676 TCATCGCTTATCGGTATTCTTAAATTC 58.077 33.333 0.00 0.00 39.05 2.17
733 2252 7.647907 TCGCTTATCGGTATTCTTAAATTCC 57.352 36.000 0.00 0.00 39.05 3.01
736 2255 7.360101 CGCTTATCGGTATTCTTAAATTCCTGG 60.360 40.741 0.00 0.00 31.83 4.45
737 2256 7.573283 GCTTATCGGTATTCTTAAATTCCTGGC 60.573 40.741 0.00 0.00 31.83 4.85
741 2260 5.237344 CGGTATTCTTAAATTCCTGGCTCAG 59.763 44.000 0.00 0.00 31.83 3.35
776 2295 0.253044 GGCACTCATGGTTGGCTAGA 59.747 55.000 12.06 0.00 0.00 2.43
833 2358 5.239963 TGTTGACTTGACTGTGTACTCGATA 59.760 40.000 0.00 0.00 0.00 2.92
842 2371 5.720202 ACTGTGTACTCGATAAATTGCTCA 58.280 37.500 0.00 0.00 0.00 4.26
866 2665 4.461781 GTGGTTACTCTAAGGTAGCAGTGA 59.538 45.833 0.00 0.00 0.00 3.41
882 2681 2.030958 TGACATGCTCTGCAGTGCG 61.031 57.895 29.55 20.84 43.65 5.34
883 2682 2.031516 GACATGCTCTGCAGTGCGT 61.032 57.895 29.55 27.71 43.65 5.24
904 2703 4.982295 CGTGTGATCACTTTGTTCAGAGTA 59.018 41.667 25.55 0.00 41.89 2.59
915 2714 4.585955 TGTTCAGAGTAGAGTGTTGTCC 57.414 45.455 0.00 0.00 0.00 4.02
920 2721 1.896465 GAGTAGAGTGTTGTCCTGCCT 59.104 52.381 0.00 0.00 0.00 4.75
984 2785 8.303876 GGCTTTGATCTTACCTTGTTTTATTGA 58.696 33.333 0.00 0.00 0.00 2.57
1391 3196 0.178995 TGCTGATCCTTGTGGTGCAA 60.179 50.000 0.00 0.00 35.50 4.08
1554 3359 1.638070 TCCTCCAGAGCTCTCTCAAGA 59.362 52.381 14.96 4.57 41.81 3.02
1568 3373 6.238869 GCTCTCTCAAGACAACCAAAGAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
1620 3479 6.487331 ACCAAGACGTGACCAACATTTTTATA 59.513 34.615 0.00 0.00 0.00 0.98
1713 3572 2.609459 CGTGGGATAGTTGATTCAGTGC 59.391 50.000 0.00 0.00 0.00 4.40
1738 3597 3.666274 AGATAGACGACTCAGATACCCG 58.334 50.000 0.00 0.00 0.00 5.28
1755 3632 3.175594 ACCCGGAGTAAGGTAACAATCA 58.824 45.455 0.73 0.00 41.41 2.57
1762 3639 6.235664 GGAGTAAGGTAACAATCAAGGAACA 58.764 40.000 0.00 0.00 41.41 3.18
1771 3648 5.520748 ACAATCAAGGAACATAGGGAAGT 57.479 39.130 0.00 0.00 0.00 3.01
1808 3685 1.842562 AGGGTGATGGAGATGGAACTG 59.157 52.381 0.00 0.00 0.00 3.16
1838 3715 8.028652 TCATGTATGATATCCTGTACACCAAA 57.971 34.615 12.25 1.18 30.67 3.28
1862 3739 0.321671 ACGTGATCCACTCTTGGGTG 59.678 55.000 0.00 0.00 44.11 4.61
1919 3796 1.745232 TTGCCTCACTCGTGTTGTTT 58.255 45.000 0.00 0.00 0.00 2.83
1922 3799 1.668751 GCCTCACTCGTGTTGTTTCAA 59.331 47.619 0.00 0.00 0.00 2.69
1952 3829 3.569701 ACAAAGATGGTTACAGCCAAGTG 59.430 43.478 0.00 0.00 42.48 3.16
1979 3856 4.195225 TGTCATCACATACGCCTTGTTA 57.805 40.909 0.00 0.00 0.00 2.41
2172 4049 3.137728 TGGCAAGATGATCATGACAGGAT 59.862 43.478 14.30 1.45 26.67 3.24
2242 4119 1.679311 GTGCTGGACAGGTGGATCA 59.321 57.895 1.01 0.00 0.00 2.92
2257 4134 3.157217 ATCAGATGAGTCGCCGGCC 62.157 63.158 23.46 7.92 0.00 6.13
2284 4161 3.482156 TCTATTCAAGATGCTGAGGCC 57.518 47.619 0.00 0.00 37.74 5.19
2313 4193 1.204146 GTGGGATAGGAGGCACTTGA 58.796 55.000 0.00 0.00 41.55 3.02
2356 4236 0.890996 GTCAAGAAGTGTGCAGGGGG 60.891 60.000 0.00 0.00 0.00 5.40
2394 4284 2.362077 GGTGATATGAACACAATGGGCC 59.638 50.000 0.00 0.00 39.65 5.80
2459 4349 3.579151 AGTACCCTGAACTCTTGAAGGAC 59.421 47.826 0.00 0.00 30.92 3.85
2466 4356 3.711704 TGAACTCTTGAAGGACTTGGAGT 59.288 43.478 0.00 0.00 35.87 3.85
2531 4747 1.766494 TCGCCACCGACTTAATCCTA 58.234 50.000 0.00 0.00 38.82 2.94
2706 4946 1.278637 GAACACGTTGCCGGTTCTG 59.721 57.895 1.90 0.00 39.28 3.02
2735 4975 1.347050 AGAGTCTGCACTGTGCTCATT 59.653 47.619 30.43 15.22 45.31 2.57
2780 5023 2.484770 CCGTGACTGGAAACCTTCTGAA 60.485 50.000 0.00 0.00 0.00 3.02
2804 5047 0.901124 AGAAGAAGATCGCCAGTGCT 59.099 50.000 0.00 0.00 34.43 4.40
2851 5103 2.303022 ACTCTGAAAATCCTCGGCTCAA 59.697 45.455 0.00 0.00 0.00 3.02
2859 5111 2.708216 TCCTCGGCTCAATTATGCAA 57.292 45.000 0.00 0.00 0.00 4.08
2862 5114 2.684881 CCTCGGCTCAATTATGCAAGTT 59.315 45.455 0.00 0.00 0.00 2.66
2883 5135 6.001460 AGTTTTATTGCTACCACACTGCTTA 58.999 36.000 0.00 0.00 0.00 3.09
2907 5165 9.816787 TTAATAGGAAGGAAAATGTGGTTAAGT 57.183 29.630 0.00 0.00 0.00 2.24
2915 5173 3.648339 AATGTGGTTAAGTTGCTGCTG 57.352 42.857 0.00 0.00 0.00 4.41
3027 5285 8.427902 TCTGACTATCATGTGGCTTTATCTAT 57.572 34.615 0.00 0.00 0.00 1.98
3049 5307 3.945640 ACACCTCCACCAAGTAAAAGT 57.054 42.857 0.00 0.00 0.00 2.66
3055 5313 5.309806 ACCTCCACCAAGTAAAAGTAGACAT 59.690 40.000 0.00 0.00 0.00 3.06
3059 5317 8.197592 TCCACCAAGTAAAAGTAGACATAAGA 57.802 34.615 0.00 0.00 0.00 2.10
3060 5318 8.653191 TCCACCAAGTAAAAGTAGACATAAGAA 58.347 33.333 0.00 0.00 0.00 2.52
3061 5319 9.280174 CCACCAAGTAAAAGTAGACATAAGAAA 57.720 33.333 0.00 0.00 0.00 2.52
3069 5327 8.494016 AAAAGTAGACATAAGAAATCGGAAGG 57.506 34.615 0.00 0.00 0.00 3.46
3070 5328 7.419711 AAGTAGACATAAGAAATCGGAAGGA 57.580 36.000 0.00 0.00 0.00 3.36
3071 5329 7.419711 AGTAGACATAAGAAATCGGAAGGAA 57.580 36.000 0.00 0.00 0.00 3.36
3078 5336 8.049721 ACATAAGAAATCGGAAGGAAGAAGAAT 58.950 33.333 0.00 0.00 0.00 2.40
3081 5339 6.476378 AGAAATCGGAAGGAAGAAGAATGAA 58.524 36.000 0.00 0.00 0.00 2.57
3208 5494 8.562892 CAGTTTCCTATGATGAATACATTGGAC 58.437 37.037 0.00 0.00 44.41 4.02
3217 5503 6.998074 TGATGAATACATTGGACCATAGAACC 59.002 38.462 0.00 0.00 36.82 3.62
3237 5523 5.301835 ACCTCAATTGACATGCTAGCTAT 57.698 39.130 17.23 5.06 0.00 2.97
3260 5546 4.210724 CCAGCAATGATTTTGGGAACAT 57.789 40.909 0.00 0.00 42.32 2.71
3312 5712 6.250819 CAACGATGATATGTGAACAAGTTCC 58.749 40.000 10.19 3.15 38.77 3.62
3334 5734 2.196742 AATAGATGCAGGTCCAGGGA 57.803 50.000 0.00 0.00 0.00 4.20
3339 5739 1.213926 GATGCAGGTCCAGGGATCTTT 59.786 52.381 0.00 0.00 32.47 2.52
3359 5759 0.523072 GTTGTGGGCAGTGCAGTATG 59.477 55.000 18.61 0.00 40.87 2.39
3383 5786 8.655651 TGTGCATATCAGTTACGATTTATTGA 57.344 30.769 0.00 0.00 0.00 2.57
3401 5804 3.683365 TGACAGCAGCAGAAAGTCATA 57.317 42.857 0.00 0.00 34.59 2.15
3417 5820 5.755409 AGTCATATCCAGTTGGTGTTGTA 57.245 39.130 0.00 0.00 36.34 2.41
3430 5833 3.580895 TGGTGTTGTATGAAGTAGCAGGA 59.419 43.478 0.00 0.00 0.00 3.86
3438 5841 2.447443 TGAAGTAGCAGGATCTGACGT 58.553 47.619 0.00 0.00 32.44 4.34
3566 6142 2.421952 GCAGATGGAATGCTGACCCTAA 60.422 50.000 0.00 0.00 40.59 2.69
3619 6195 4.202441 TGGGAATGCTTCTCTTGCTATTC 58.798 43.478 0.00 0.00 32.55 1.75
3626 6202 6.246420 TGCTTCTCTTGCTATTCACTTTTC 57.754 37.500 0.00 0.00 0.00 2.29
3627 6203 5.764686 TGCTTCTCTTGCTATTCACTTTTCA 59.235 36.000 0.00 0.00 0.00 2.69
3628 6204 6.082984 GCTTCTCTTGCTATTCACTTTTCAC 58.917 40.000 0.00 0.00 0.00 3.18
3629 6205 6.072783 GCTTCTCTTGCTATTCACTTTTCACT 60.073 38.462 0.00 0.00 0.00 3.41
3630 6206 7.521261 GCTTCTCTTGCTATTCACTTTTCACTT 60.521 37.037 0.00 0.00 0.00 3.16
3631 6207 7.426929 TCTCTTGCTATTCACTTTTCACTTC 57.573 36.000 0.00 0.00 0.00 3.01
3632 6208 6.428159 TCTCTTGCTATTCACTTTTCACTTCC 59.572 38.462 0.00 0.00 0.00 3.46
3633 6209 5.179368 TCTTGCTATTCACTTTTCACTTCCG 59.821 40.000 0.00 0.00 0.00 4.30
3634 6210 3.188460 TGCTATTCACTTTTCACTTCCGC 59.812 43.478 0.00 0.00 0.00 5.54
3635 6211 3.437049 GCTATTCACTTTTCACTTCCGCT 59.563 43.478 0.00 0.00 0.00 5.52
3636 6212 4.083271 GCTATTCACTTTTCACTTCCGCTT 60.083 41.667 0.00 0.00 0.00 4.68
3637 6213 3.963383 TTCACTTTTCACTTCCGCTTC 57.037 42.857 0.00 0.00 0.00 3.86
3638 6214 1.864711 TCACTTTTCACTTCCGCTTCG 59.135 47.619 0.00 0.00 0.00 3.79
3643 6219 1.250328 TTCACTTCCGCTTCGGTAGA 58.750 50.000 16.71 3.95 45.08 2.59
3644 6220 0.524862 TCACTTCCGCTTCGGTAGAC 59.475 55.000 16.71 0.00 45.08 2.59
3645 6221 0.458025 CACTTCCGCTTCGGTAGACC 60.458 60.000 16.71 0.00 45.08 3.85
3646 6222 1.141234 CTTCCGCTTCGGTAGACCC 59.859 63.158 6.09 0.00 45.08 4.46
3647 6223 2.294132 CTTCCGCTTCGGTAGACCCC 62.294 65.000 6.09 0.00 45.08 4.95
3648 6224 3.846430 CCGCTTCGGTAGACCCCC 61.846 72.222 0.00 0.00 42.73 5.40
3649 6225 2.758737 CGCTTCGGTAGACCCCCT 60.759 66.667 0.00 0.00 0.00 4.79
3650 6226 2.356780 CGCTTCGGTAGACCCCCTT 61.357 63.158 0.00 0.00 0.00 3.95
3651 6227 1.521141 GCTTCGGTAGACCCCCTTC 59.479 63.158 0.00 0.00 0.00 3.46
3652 6228 1.262640 GCTTCGGTAGACCCCCTTCA 61.263 60.000 0.00 0.00 0.00 3.02
3653 6229 1.272807 CTTCGGTAGACCCCCTTCAA 58.727 55.000 0.00 0.00 0.00 2.69
3654 6230 0.978907 TTCGGTAGACCCCCTTCAAC 59.021 55.000 0.00 0.00 0.00 3.18
3655 6231 0.178926 TCGGTAGACCCCCTTCAACA 60.179 55.000 0.00 0.00 0.00 3.33
3656 6232 0.036671 CGGTAGACCCCCTTCAACAC 60.037 60.000 0.00 0.00 0.00 3.32
3657 6233 1.061546 GGTAGACCCCCTTCAACACA 58.938 55.000 0.00 0.00 0.00 3.72
3658 6234 1.422402 GGTAGACCCCCTTCAACACAA 59.578 52.381 0.00 0.00 0.00 3.33
3659 6235 2.552373 GGTAGACCCCCTTCAACACAAG 60.552 54.545 0.00 0.00 0.00 3.16
3660 6236 0.478507 AGACCCCCTTCAACACAAGG 59.521 55.000 0.00 0.00 42.57 3.61
3661 6237 0.476771 GACCCCCTTCAACACAAGGA 59.523 55.000 0.53 0.00 45.41 3.36
3662 6238 1.075536 GACCCCCTTCAACACAAGGAT 59.924 52.381 0.53 0.00 45.41 3.24
3663 6239 1.203050 ACCCCCTTCAACACAAGGATG 60.203 52.381 0.53 0.00 45.41 3.51
3664 6240 1.549203 CCCCTTCAACACAAGGATGG 58.451 55.000 0.53 0.00 45.41 3.51
3665 6241 0.890683 CCCTTCAACACAAGGATGGC 59.109 55.000 0.53 0.00 45.41 4.40
3666 6242 1.548582 CCCTTCAACACAAGGATGGCT 60.549 52.381 0.53 0.00 45.41 4.75
3667 6243 2.290896 CCCTTCAACACAAGGATGGCTA 60.291 50.000 0.53 0.00 45.41 3.93
3668 6244 3.420893 CCTTCAACACAAGGATGGCTAA 58.579 45.455 0.00 0.00 45.41 3.09
3669 6245 3.441572 CCTTCAACACAAGGATGGCTAAG 59.558 47.826 0.00 0.00 45.41 2.18
3670 6246 4.326826 CTTCAACACAAGGATGGCTAAGA 58.673 43.478 0.00 0.00 0.00 2.10
3671 6247 4.574674 TCAACACAAGGATGGCTAAGAT 57.425 40.909 0.00 0.00 0.00 2.40
3672 6248 4.922206 TCAACACAAGGATGGCTAAGATT 58.078 39.130 0.00 0.00 0.00 2.40
3673 6249 4.701651 TCAACACAAGGATGGCTAAGATTG 59.298 41.667 0.00 0.00 0.00 2.67
3674 6250 4.307032 ACACAAGGATGGCTAAGATTGT 57.693 40.909 0.00 0.00 0.00 2.71
3675 6251 4.265073 ACACAAGGATGGCTAAGATTGTC 58.735 43.478 0.00 0.00 0.00 3.18
3676 6252 3.629398 CACAAGGATGGCTAAGATTGTCC 59.371 47.826 0.00 0.00 0.00 4.02
3677 6253 3.217626 CAAGGATGGCTAAGATTGTCCC 58.782 50.000 0.00 0.00 0.00 4.46
3678 6254 2.492025 AGGATGGCTAAGATTGTCCCA 58.508 47.619 0.00 0.00 0.00 4.37
3679 6255 3.059097 AGGATGGCTAAGATTGTCCCAT 58.941 45.455 0.00 0.00 38.90 4.00
3680 6256 4.242811 AGGATGGCTAAGATTGTCCCATA 58.757 43.478 0.00 0.00 36.48 2.74
3681 6257 4.042187 AGGATGGCTAAGATTGTCCCATAC 59.958 45.833 0.00 0.00 36.48 2.39
3682 6258 3.857157 TGGCTAAGATTGTCCCATACC 57.143 47.619 0.00 0.00 0.00 2.73
3683 6259 2.441750 TGGCTAAGATTGTCCCATACCC 59.558 50.000 0.00 0.00 0.00 3.69
3684 6260 2.224793 GGCTAAGATTGTCCCATACCCC 60.225 54.545 0.00 0.00 0.00 4.95
3685 6261 2.711547 GCTAAGATTGTCCCATACCCCT 59.288 50.000 0.00 0.00 0.00 4.79
3686 6262 3.138468 GCTAAGATTGTCCCATACCCCTT 59.862 47.826 0.00 0.00 0.00 3.95
3687 6263 3.953542 AAGATTGTCCCATACCCCTTC 57.046 47.619 0.00 0.00 0.00 3.46
3688 6264 2.858644 AGATTGTCCCATACCCCTTCA 58.141 47.619 0.00 0.00 0.00 3.02
3689 6265 3.407209 AGATTGTCCCATACCCCTTCAT 58.593 45.455 0.00 0.00 0.00 2.57
3690 6266 4.577096 AGATTGTCCCATACCCCTTCATA 58.423 43.478 0.00 0.00 0.00 2.15
3691 6267 4.981647 AGATTGTCCCATACCCCTTCATAA 59.018 41.667 0.00 0.00 0.00 1.90
3692 6268 4.513406 TTGTCCCATACCCCTTCATAAC 57.487 45.455 0.00 0.00 0.00 1.89
3693 6269 2.436542 TGTCCCATACCCCTTCATAACG 59.563 50.000 0.00 0.00 0.00 3.18
3694 6270 2.051692 TCCCATACCCCTTCATAACGG 58.948 52.381 0.00 0.00 0.00 4.44
3695 6271 2.051692 CCCATACCCCTTCATAACGGA 58.948 52.381 0.00 0.00 0.00 4.69
3696 6272 2.038557 CCCATACCCCTTCATAACGGAG 59.961 54.545 0.00 0.00 0.00 4.63
3697 6273 2.038557 CCATACCCCTTCATAACGGAGG 59.961 54.545 0.00 0.00 0.00 4.30
3698 6274 1.797320 TACCCCTTCATAACGGAGGG 58.203 55.000 0.00 0.00 40.58 4.30
3699 6275 1.148498 CCCCTTCATAACGGAGGGC 59.852 63.158 0.00 0.00 38.44 5.19
3700 6276 1.632018 CCCCTTCATAACGGAGGGCA 61.632 60.000 0.00 0.00 38.44 5.36
3701 6277 0.463833 CCCTTCATAACGGAGGGCAC 60.464 60.000 0.00 0.00 32.95 5.01
3702 6278 0.810031 CCTTCATAACGGAGGGCACG 60.810 60.000 0.00 0.00 37.36 5.34
3703 6279 0.174845 CTTCATAACGGAGGGCACGA 59.825 55.000 0.00 0.00 34.93 4.35
3704 6280 0.828022 TTCATAACGGAGGGCACGAT 59.172 50.000 0.00 0.00 34.93 3.73
3705 6281 1.694844 TCATAACGGAGGGCACGATA 58.305 50.000 0.00 0.00 34.93 2.92
3706 6282 1.611977 TCATAACGGAGGGCACGATAG 59.388 52.381 0.00 0.00 46.19 2.08
3707 6283 0.966920 ATAACGGAGGGCACGATAGG 59.033 55.000 0.00 0.00 43.77 2.57
3708 6284 1.741327 TAACGGAGGGCACGATAGGC 61.741 60.000 0.00 0.00 43.77 3.93
3709 6285 3.536917 CGGAGGGCACGATAGGCA 61.537 66.667 0.00 0.00 43.77 4.75
3710 6286 2.872388 CGGAGGGCACGATAGGCAT 61.872 63.158 0.00 0.00 43.77 4.40
3711 6287 1.532604 CGGAGGGCACGATAGGCATA 61.533 60.000 0.00 0.00 43.77 3.14
3712 6288 0.685097 GGAGGGCACGATAGGCATAA 59.315 55.000 0.00 0.00 43.77 1.90
3713 6289 1.279271 GGAGGGCACGATAGGCATAAT 59.721 52.381 0.00 0.00 43.77 1.28
3714 6290 2.290323 GGAGGGCACGATAGGCATAATT 60.290 50.000 0.00 0.00 43.77 1.40
3715 6291 3.412386 GAGGGCACGATAGGCATAATTT 58.588 45.455 0.00 0.00 43.77 1.82
3716 6292 3.149196 AGGGCACGATAGGCATAATTTG 58.851 45.455 0.00 0.00 43.77 2.32
3717 6293 3.146066 GGGCACGATAGGCATAATTTGA 58.854 45.455 0.00 0.00 43.77 2.69
3718 6294 3.568007 GGGCACGATAGGCATAATTTGAA 59.432 43.478 0.00 0.00 43.77 2.69
3719 6295 4.037446 GGGCACGATAGGCATAATTTGAAA 59.963 41.667 0.00 0.00 43.77 2.69
3720 6296 5.451242 GGGCACGATAGGCATAATTTGAAAA 60.451 40.000 0.00 0.00 43.77 2.29
3721 6297 6.039616 GGCACGATAGGCATAATTTGAAAAA 58.960 36.000 0.00 0.00 43.77 1.94
3722 6298 6.198966 GGCACGATAGGCATAATTTGAAAAAG 59.801 38.462 0.00 0.00 43.77 2.27
3723 6299 6.972328 GCACGATAGGCATAATTTGAAAAAGA 59.028 34.615 0.00 0.00 43.77 2.52
3724 6300 7.166473 GCACGATAGGCATAATTTGAAAAAGAG 59.834 37.037 0.00 0.00 43.77 2.85
3725 6301 7.645340 CACGATAGGCATAATTTGAAAAAGAGG 59.355 37.037 0.00 0.00 43.77 3.69
3726 6302 6.638468 CGATAGGCATAATTTGAAAAAGAGGC 59.362 38.462 0.00 0.00 0.00 4.70
3727 6303 5.089970 AGGCATAATTTGAAAAAGAGGCC 57.910 39.130 0.00 0.00 35.20 5.19
3728 6304 3.865164 GGCATAATTTGAAAAAGAGGCCG 59.135 43.478 0.00 0.00 0.00 6.13
3729 6305 3.306973 GCATAATTTGAAAAAGAGGCCGC 59.693 43.478 0.00 0.00 0.00 6.53
3730 6306 2.455674 AATTTGAAAAAGAGGCCGCC 57.544 45.000 1.49 0.00 0.00 6.13
3731 6307 0.608130 ATTTGAAAAAGAGGCCGCCC 59.392 50.000 5.55 0.00 0.00 6.13
3732 6308 0.757188 TTTGAAAAAGAGGCCGCCCA 60.757 50.000 5.55 0.00 0.00 5.36
3733 6309 1.460273 TTGAAAAAGAGGCCGCCCAC 61.460 55.000 5.55 0.42 0.00 4.61
3734 6310 1.603739 GAAAAAGAGGCCGCCCACT 60.604 57.895 5.55 3.12 33.04 4.00
3735 6311 1.587043 GAAAAAGAGGCCGCCCACTC 61.587 60.000 5.55 0.00 30.11 3.51
3736 6312 3.901797 AAAAGAGGCCGCCCACTCG 62.902 63.158 5.55 0.00 38.72 4.18
3745 6321 4.767255 GCCCACTCGCTGTCCCTG 62.767 72.222 0.00 0.00 0.00 4.45
3746 6322 4.087892 CCCACTCGCTGTCCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
3747 6323 4.767255 CCACTCGCTGTCCCTGGC 62.767 72.222 0.00 0.00 0.00 4.85
3753 6329 4.008933 GCTGTCCCTGGCGACTGT 62.009 66.667 17.10 0.00 34.99 3.55
3754 6330 2.047844 CTGTCCCTGGCGACTGTG 60.048 66.667 13.91 0.00 33.70 3.66
3755 6331 3.596066 CTGTCCCTGGCGACTGTGG 62.596 68.421 13.91 0.00 33.70 4.17
3765 6341 2.676471 GACTGTGGCGCCCCAAAT 60.676 61.111 26.77 9.84 44.33 2.32
3766 6342 2.676471 ACTGTGGCGCCCCAAATC 60.676 61.111 26.77 7.88 44.33 2.17
3767 6343 2.676121 CTGTGGCGCCCCAAATCA 60.676 61.111 26.77 12.09 44.33 2.57
3768 6344 2.037049 TGTGGCGCCCCAAATCAT 59.963 55.556 26.77 0.00 44.33 2.45
3769 6345 2.287457 CTGTGGCGCCCCAAATCATG 62.287 60.000 26.77 0.74 44.33 3.07
3770 6346 2.051518 GTGGCGCCCCAAATCATGA 61.052 57.895 26.77 0.00 44.33 3.07
3771 6347 1.304796 TGGCGCCCCAAATCATGAA 60.305 52.632 26.77 0.00 38.46 2.57
3772 6348 1.321805 TGGCGCCCCAAATCATGAAG 61.322 55.000 26.77 0.00 38.46 3.02
3773 6349 1.227060 GCGCCCCAAATCATGAAGC 60.227 57.895 0.00 0.00 0.00 3.86
3774 6350 1.438814 CGCCCCAAATCATGAAGCC 59.561 57.895 0.00 0.00 0.00 4.35
3775 6351 1.438814 GCCCCAAATCATGAAGCCG 59.561 57.895 0.00 0.00 0.00 5.52
3776 6352 1.438814 CCCCAAATCATGAAGCCGC 59.561 57.895 0.00 0.00 0.00 6.53
3777 6353 1.438814 CCCAAATCATGAAGCCGCC 59.561 57.895 0.00 0.00 0.00 6.13
3778 6354 1.039233 CCCAAATCATGAAGCCGCCT 61.039 55.000 0.00 0.00 0.00 5.52
3779 6355 0.101759 CCAAATCATGAAGCCGCCTG 59.898 55.000 0.00 0.00 0.00 4.85
3780 6356 0.526954 CAAATCATGAAGCCGCCTGC 60.527 55.000 0.00 0.00 41.71 4.85
3781 6357 1.669999 AAATCATGAAGCCGCCTGCC 61.670 55.000 0.00 0.00 42.71 4.85
3782 6358 2.842188 AATCATGAAGCCGCCTGCCA 62.842 55.000 0.00 0.00 42.71 4.92
3783 6359 2.635787 ATCATGAAGCCGCCTGCCAT 62.636 55.000 0.00 0.00 42.71 4.40
3784 6360 2.831742 ATGAAGCCGCCTGCCATG 60.832 61.111 0.00 0.00 42.71 3.66
3790 6366 2.442643 CCGCCTGCCATGGGAAAT 60.443 61.111 15.13 0.00 0.00 2.17
3791 6367 2.788640 CCGCCTGCCATGGGAAATG 61.789 63.158 15.13 3.20 0.00 2.32
3792 6368 2.788640 CGCCTGCCATGGGAAATGG 61.789 63.158 15.13 9.89 41.99 3.16
3793 6369 2.437396 GCCTGCCATGGGAAATGGG 61.437 63.158 15.13 9.49 39.53 4.00
3794 6370 1.310715 CCTGCCATGGGAAATGGGA 59.689 57.895 15.13 2.58 39.53 4.37
3795 6371 0.105349 CCTGCCATGGGAAATGGGAT 60.105 55.000 15.13 0.00 38.84 3.85
3796 6372 1.335145 CTGCCATGGGAAATGGGATC 58.665 55.000 15.13 0.00 38.84 3.36
3797 6373 0.467844 TGCCATGGGAAATGGGATCG 60.468 55.000 15.13 0.00 39.53 3.69
3798 6374 1.809567 GCCATGGGAAATGGGATCGC 61.810 60.000 15.13 2.14 39.53 4.58
3799 6375 0.178981 CCATGGGAAATGGGATCGCT 60.179 55.000 11.46 0.00 35.58 4.93
3800 6376 0.956633 CATGGGAAATGGGATCGCTG 59.043 55.000 11.46 0.00 0.00 5.18
3801 6377 0.178981 ATGGGAAATGGGATCGCTGG 60.179 55.000 11.46 0.00 0.00 4.85
3802 6378 1.278302 TGGGAAATGGGATCGCTGGA 61.278 55.000 11.46 0.00 0.00 3.86
3803 6379 0.536006 GGGAAATGGGATCGCTGGAG 60.536 60.000 11.46 0.00 0.00 3.86
3804 6380 1.169034 GGAAATGGGATCGCTGGAGC 61.169 60.000 11.46 0.00 37.78 4.70
3823 6399 4.873129 CCGCCATCCCTCGTCGTG 62.873 72.222 0.00 0.00 0.00 4.35
3824 6400 3.822192 CGCCATCCCTCGTCGTGA 61.822 66.667 0.00 0.00 0.00 4.35
3825 6401 2.202756 GCCATCCCTCGTCGTGAC 60.203 66.667 0.00 0.00 0.00 3.67
3870 6446 4.504916 CCGCCAGCTCCTCACGAG 62.505 72.222 0.00 0.00 42.04 4.18
3916 6492 3.443045 CGGCGATGGCAAGGCTTT 61.443 61.111 0.00 0.00 42.47 3.51
3917 6493 2.182537 GGCGATGGCAAGGCTTTG 59.817 61.111 3.80 3.80 42.47 2.77
3957 6533 4.144727 GGCGAGGGAGGAGGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
3958 6534 2.042843 GCGAGGGAGGAGGAGGAA 60.043 66.667 0.00 0.00 0.00 3.36
3959 6535 2.131067 GCGAGGGAGGAGGAGGAAG 61.131 68.421 0.00 0.00 0.00 3.46
3960 6536 1.615814 CGAGGGAGGAGGAGGAAGA 59.384 63.158 0.00 0.00 0.00 2.87
3961 6537 0.467290 CGAGGGAGGAGGAGGAAGAG 60.467 65.000 0.00 0.00 0.00 2.85
3962 6538 0.930726 GAGGGAGGAGGAGGAAGAGA 59.069 60.000 0.00 0.00 0.00 3.10
3963 6539 0.933700 AGGGAGGAGGAGGAAGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
3964 6540 0.105709 GGGAGGAGGAGGAAGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
3965 6541 0.105709 GGAGGAGGAGGAAGAGAGGG 60.106 65.000 0.00 0.00 0.00 4.30
3966 6542 0.105709 GAGGAGGAGGAAGAGAGGGG 60.106 65.000 0.00 0.00 0.00 4.79
3967 6543 1.074850 GGAGGAGGAAGAGAGGGGG 60.075 68.421 0.00 0.00 0.00 5.40
3968 6544 1.595058 GGAGGAGGAAGAGAGGGGGA 61.595 65.000 0.00 0.00 0.00 4.81
3969 6545 0.105709 GAGGAGGAAGAGAGGGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
3970 6546 0.858139 AGGAGGAAGAGAGGGGGAGT 60.858 60.000 0.00 0.00 0.00 3.85
3971 6547 0.397957 GGAGGAAGAGAGGGGGAGTC 60.398 65.000 0.00 0.00 0.00 3.36
3972 6548 0.753848 GAGGAAGAGAGGGGGAGTCG 60.754 65.000 0.00 0.00 0.00 4.18
3973 6549 1.758906 GGAAGAGAGGGGGAGTCGG 60.759 68.421 0.00 0.00 0.00 4.79
3974 6550 1.758906 GAAGAGAGGGGGAGTCGGG 60.759 68.421 0.00 0.00 0.00 5.14
3975 6551 3.318922 AAGAGAGGGGGAGTCGGGG 62.319 68.421 0.00 0.00 0.00 5.73
3976 6552 4.862823 GAGAGGGGGAGTCGGGGG 62.863 77.778 0.00 0.00 0.00 5.40
3998 6574 4.523282 GGGATCTGGGGGCCTCCT 62.523 72.222 25.88 0.87 35.33 3.69
3999 6575 2.621115 GGATCTGGGGGCCTCCTA 59.379 66.667 25.88 12.07 35.33 2.94
4000 6576 1.537643 GGATCTGGGGGCCTCCTAG 60.538 68.421 25.88 19.36 44.63 3.02
4001 6577 2.122189 ATCTGGGGGCCTCCTAGC 60.122 66.667 25.88 0.00 43.14 3.42
4036 6612 4.124943 TCGGGAGAGACGGGAGGG 62.125 72.222 0.00 0.00 0.00 4.30
4037 6613 4.124943 CGGGAGAGACGGGAGGGA 62.125 72.222 0.00 0.00 0.00 4.20
4038 6614 2.442458 GGGAGAGACGGGAGGGAC 60.442 72.222 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.417890 CCTTGGTCCAGTGAAGAGTGT 59.582 52.381 0.00 0.00 0.00 3.55
1 2 1.271054 CCCTTGGTCCAGTGAAGAGTG 60.271 57.143 0.00 0.00 0.00 3.51
2 3 1.059913 CCCTTGGTCCAGTGAAGAGT 58.940 55.000 0.00 0.00 0.00 3.24
3 4 1.277557 CTCCCTTGGTCCAGTGAAGAG 59.722 57.143 0.00 0.00 0.00 2.85
4 5 1.352083 CTCCCTTGGTCCAGTGAAGA 58.648 55.000 0.00 0.00 0.00 2.87
6 7 2.409064 TACTCCCTTGGTCCAGTGAA 57.591 50.000 0.00 0.00 0.00 3.18
7 8 2.409064 TTACTCCCTTGGTCCAGTGA 57.591 50.000 0.00 0.00 0.00 3.41
8 9 3.009033 TCATTTACTCCCTTGGTCCAGTG 59.991 47.826 0.00 0.00 0.00 3.66
9 10 3.009143 GTCATTTACTCCCTTGGTCCAGT 59.991 47.826 0.00 0.00 0.00 4.00
10 11 3.009033 TGTCATTTACTCCCTTGGTCCAG 59.991 47.826 0.00 0.00 0.00 3.86
11 12 2.983192 TGTCATTTACTCCCTTGGTCCA 59.017 45.455 0.00 0.00 0.00 4.02
12 13 3.713826 TGTCATTTACTCCCTTGGTCC 57.286 47.619 0.00 0.00 0.00 4.46
13 14 5.048713 CACTTTGTCATTTACTCCCTTGGTC 60.049 44.000 0.00 0.00 0.00 4.02
14 15 4.827284 CACTTTGTCATTTACTCCCTTGGT 59.173 41.667 0.00 0.00 0.00 3.67
15 16 5.048713 GTCACTTTGTCATTTACTCCCTTGG 60.049 44.000 0.00 0.00 0.00 3.61
16 17 5.048713 GGTCACTTTGTCATTTACTCCCTTG 60.049 44.000 0.00 0.00 0.00 3.61
17 18 5.070685 GGTCACTTTGTCATTTACTCCCTT 58.929 41.667 0.00 0.00 0.00 3.95
35 36 3.263425 TGGTTCCTTTCCTAGATGGTCAC 59.737 47.826 0.00 0.00 37.07 3.67
37 38 4.569719 TTGGTTCCTTTCCTAGATGGTC 57.430 45.455 0.00 0.00 37.07 4.02
38 39 4.105697 TGTTTGGTTCCTTTCCTAGATGGT 59.894 41.667 0.00 0.00 37.07 3.55
44 45 5.475564 GCTTATGTGTTTGGTTCCTTTCCTA 59.524 40.000 0.00 0.00 0.00 2.94
47 48 4.280929 AGGCTTATGTGTTTGGTTCCTTTC 59.719 41.667 0.00 0.00 0.00 2.62
70 71 2.903784 TCTGCTTAACCAGGCTTGTCTA 59.096 45.455 0.00 0.00 33.64 2.59
73 74 2.656947 TTCTGCTTAACCAGGCTTGT 57.343 45.000 0.00 0.00 33.64 3.16
78 79 3.569701 TGAGCTTTTTCTGCTTAACCAGG 59.430 43.478 0.00 0.00 41.30 4.45
84 85 4.655963 AGATGGTGAGCTTTTTCTGCTTA 58.344 39.130 0.00 0.00 41.30 3.09
86 87 3.080319 GAGATGGTGAGCTTTTTCTGCT 58.920 45.455 0.00 0.00 44.24 4.24
97 98 3.204526 GAATTGAGCCTGAGATGGTGAG 58.795 50.000 0.00 0.00 0.00 3.51
98 99 2.573009 TGAATTGAGCCTGAGATGGTGA 59.427 45.455 0.00 0.00 0.00 4.02
99 100 2.943690 CTGAATTGAGCCTGAGATGGTG 59.056 50.000 0.00 0.00 0.00 4.17
100 101 2.092538 CCTGAATTGAGCCTGAGATGGT 60.093 50.000 0.00 0.00 0.00 3.55
101 102 2.573369 CCTGAATTGAGCCTGAGATGG 58.427 52.381 0.00 0.00 0.00 3.51
102 103 1.948145 GCCTGAATTGAGCCTGAGATG 59.052 52.381 0.00 0.00 0.00 2.90
103 104 1.562942 TGCCTGAATTGAGCCTGAGAT 59.437 47.619 0.00 0.00 0.00 2.75
104 105 0.986527 TGCCTGAATTGAGCCTGAGA 59.013 50.000 0.00 0.00 0.00 3.27
105 106 1.380524 CTGCCTGAATTGAGCCTGAG 58.619 55.000 0.00 0.00 0.00 3.35
106 107 0.679002 GCTGCCTGAATTGAGCCTGA 60.679 55.000 0.00 0.00 0.00 3.86
111 112 0.883833 AAACGGCTGCCTGAATTGAG 59.116 50.000 17.92 0.40 0.00 3.02
118 119 1.442017 GCGTAAAAACGGCTGCCTG 60.442 57.895 17.92 12.68 0.00 4.85
133 134 1.070758 AGAGTCCTGAACATTGTGCGT 59.929 47.619 0.00 0.00 0.00 5.24
134 135 1.800805 AGAGTCCTGAACATTGTGCG 58.199 50.000 0.00 0.00 0.00 5.34
157 162 0.406361 TGGGTATTTCGGGGCTGTTT 59.594 50.000 0.00 0.00 0.00 2.83
166 172 4.142249 GGAGTTTGGGATTTGGGTATTTCG 60.142 45.833 0.00 0.00 0.00 3.46
172 178 1.219213 TGTGGAGTTTGGGATTTGGGT 59.781 47.619 0.00 0.00 0.00 4.51
192 198 3.005155 GCAGCAGAACAGATTGGAAAACT 59.995 43.478 0.00 0.00 0.00 2.66
197 203 2.845019 CGCAGCAGAACAGATTGGA 58.155 52.632 0.00 0.00 0.00 3.53
223 229 2.176055 CTCGTGGTCGTGGTCTCG 59.824 66.667 0.00 0.00 38.33 4.04
265 271 4.077184 CGGCGGCTGGTCCTAACA 62.077 66.667 7.61 0.00 0.00 2.41
285 291 0.461870 TACATGATGCAGGTGGTCGC 60.462 55.000 0.00 0.00 29.18 5.19
287 293 2.698855 ACTACATGATGCAGGTGGTC 57.301 50.000 0.00 0.00 35.13 4.02
298 304 4.719773 AGCAACTATGGGGTAACTACATGA 59.280 41.667 0.00 0.00 36.04 3.07
306 312 3.132289 CGAGAAGAGCAACTATGGGGTAA 59.868 47.826 0.00 0.00 0.00 2.85
315 321 1.000283 CTCCACACGAGAAGAGCAACT 60.000 52.381 0.00 0.00 41.63 3.16
386 392 3.471806 GGAGAAGGAGACCCCGGC 61.472 72.222 0.00 0.00 40.87 6.13
393 399 2.042843 GGCCTCCGGAGAAGGAGA 60.043 66.667 33.39 0.00 26.72 3.71
417 423 0.947660 CACTCACATCGCAGCACAGT 60.948 55.000 0.00 0.00 0.00 3.55
427 433 0.173481 TACTCGGCAGCACTCACATC 59.827 55.000 0.00 0.00 0.00 3.06
441 447 7.047460 TCCTTAGGTTAAATAAGGCTACTCG 57.953 40.000 17.41 0.00 46.01 4.18
446 452 8.258007 GCAAAAATCCTTAGGTTAAATAAGGCT 58.742 33.333 17.41 9.39 46.01 4.58
461 467 5.124936 GGTTACGTCCTATGCAAAAATCCTT 59.875 40.000 0.00 0.00 0.00 3.36
462 468 4.638865 GGTTACGTCCTATGCAAAAATCCT 59.361 41.667 0.00 0.00 0.00 3.24
480 486 3.002553 ACAACACAAATTCGACGGGTTAC 59.997 43.478 0.00 0.00 0.00 2.50
535 541 8.221100 CGACCAATACAATTATATTCCAAGACG 58.779 37.037 0.00 0.00 0.00 4.18
573 579 5.635417 TGCATTCGATCAACCAACAATAA 57.365 34.783 0.00 0.00 0.00 1.40
610 616 4.141756 GGACATGAGAGTTGAGACCATCAT 60.142 45.833 0.00 0.00 37.89 2.45
612 618 3.450457 AGGACATGAGAGTTGAGACCATC 59.550 47.826 0.00 0.00 0.00 3.51
699 2218 2.628178 ACCGATAAGCGATGAGGAATCA 59.372 45.455 0.00 0.00 44.57 2.57
709 2228 7.384115 CAGGAATTTAAGAATACCGATAAGCGA 59.616 37.037 0.00 0.00 44.57 4.93
718 2237 6.357367 TCTGAGCCAGGAATTTAAGAATACC 58.643 40.000 0.00 0.00 31.51 2.73
732 2251 0.108424 GCTGTACACTCTGAGCCAGG 60.108 60.000 4.19 0.00 31.51 4.45
733 2252 0.894141 AGCTGTACACTCTGAGCCAG 59.106 55.000 4.19 7.15 31.43 4.85
736 2255 1.748493 AGCTAGCTGTACACTCTGAGC 59.252 52.381 18.57 1.56 0.00 4.26
737 2256 2.098934 CCAGCTAGCTGTACACTCTGAG 59.901 54.545 36.14 17.55 42.15 3.35
741 2260 0.532573 TGCCAGCTAGCTGTACACTC 59.467 55.000 36.14 20.32 42.15 3.51
764 2283 2.486191 GCTGCAGTATCTAGCCAACCAT 60.486 50.000 16.64 0.00 0.00 3.55
776 2295 7.578310 ATTCTGTTTATTCATGCTGCAGTAT 57.422 32.000 16.64 14.28 0.00 2.12
821 2340 5.576774 CACTGAGCAATTTATCGAGTACACA 59.423 40.000 0.00 0.00 0.00 3.72
833 2358 5.940470 CCTTAGAGTAACCACTGAGCAATTT 59.060 40.000 0.00 0.00 34.21 1.82
842 2371 4.463186 CACTGCTACCTTAGAGTAACCACT 59.537 45.833 0.00 0.00 37.87 4.00
866 2665 2.031616 ACGCACTGCAGAGCATGT 59.968 55.556 31.02 20.63 38.13 3.21
882 2681 6.216569 TCTACTCTGAACAAAGTGATCACAC 58.783 40.000 27.02 11.25 46.24 3.82
883 2682 6.040955 ACTCTACTCTGAACAAAGTGATCACA 59.959 38.462 27.02 4.23 0.00 3.58
904 2703 0.683973 CAGAGGCAGGACAACACTCT 59.316 55.000 0.00 0.00 38.96 3.24
915 2714 1.248785 ACATGGCAAAGCAGAGGCAG 61.249 55.000 0.00 1.10 43.80 4.85
920 2721 1.679944 GCTAGGACATGGCAAAGCAGA 60.680 52.381 17.12 0.00 35.01 4.26
1391 3196 2.140792 ATATCCGGCTCCCGCAACT 61.141 57.895 0.00 0.00 46.86 3.16
1568 3373 6.260936 CCTTGAGAGAGCTCTTTGTTTTGTTA 59.739 38.462 19.36 0.00 40.61 2.41
1620 3479 3.252458 GGCAAGTCGTTGTACCATTCTTT 59.748 43.478 0.00 0.00 35.92 2.52
1680 3539 3.832490 ACTATCCCACGCTTGCAGATATA 59.168 43.478 0.00 0.00 0.00 0.86
1713 3572 5.180492 GGGTATCTGAGTCGTCTATCTCAAG 59.820 48.000 0.00 0.00 39.67 3.02
1738 3597 6.235664 TGTTCCTTGATTGTTACCTTACTCC 58.764 40.000 0.00 0.00 0.00 3.85
1808 3685 6.437477 TGTACAGGATATCATACATGAGGGAC 59.563 42.308 4.83 0.00 40.64 4.46
1838 3715 2.146342 CAAGAGTGGATCACGTTTGCT 58.854 47.619 0.00 0.00 39.64 3.91
1862 3739 2.851263 TGATACGGATGCAATACCCC 57.149 50.000 0.00 0.00 0.00 4.95
1865 3742 3.304559 GCGAGATGATACGGATGCAATAC 59.695 47.826 0.00 0.00 0.00 1.89
1868 3745 1.605457 GGCGAGATGATACGGATGCAA 60.605 52.381 0.00 0.00 0.00 4.08
1919 3796 5.534207 AACCATCTTTGTTGCTCAATTGA 57.466 34.783 8.12 8.12 35.84 2.57
1922 3799 5.565439 GCTGTAACCATCTTTGTTGCTCAAT 60.565 40.000 0.00 0.00 35.84 2.57
1971 3848 3.681473 GGCACCACCTAACAAGGC 58.319 61.111 0.00 0.00 34.51 4.35
2172 4049 0.764890 CCTGACCACCTCCTTGAACA 59.235 55.000 0.00 0.00 0.00 3.18
2267 4144 0.465097 CGGGCCTCAGCATCTTGAAT 60.465 55.000 0.84 0.00 42.56 2.57
2284 4161 1.686325 CCTATCCCACCACTCACCGG 61.686 65.000 0.00 0.00 0.00 5.28
2313 4193 2.092158 TCTCAGAGACATCGATGGTCCT 60.092 50.000 28.09 20.55 35.89 3.85
2356 4236 2.358737 CCGTTGAGACCAGCCACC 60.359 66.667 0.00 0.00 0.00 4.61
2361 4251 2.430694 TCATATCACCCGTTGAGACCAG 59.569 50.000 0.00 0.00 37.77 4.00
2394 4284 0.179045 CCCCATTTAGTCCTCCGCAG 60.179 60.000 0.00 0.00 0.00 5.18
2447 4337 7.741554 ATAATACTCCAAGTCCTTCAAGAGT 57.258 36.000 0.00 0.00 38.15 3.24
2450 4340 9.892130 AACTTATAATACTCCAAGTCCTTCAAG 57.108 33.333 0.00 0.00 31.06 3.02
2574 4805 4.168922 TCATGTAGTTGGACAGTACACG 57.831 45.455 0.00 0.00 42.96 4.49
2706 4946 1.598962 TGCAGACTCTGTTGCCAGC 60.599 57.895 7.89 0.00 39.54 4.85
2735 4975 3.755112 TGGTGTGATCGGAACAAGTTA 57.245 42.857 0.00 0.00 0.00 2.24
2780 5023 2.564947 ACTGGCGATCTTCTTCTCAAGT 59.435 45.455 0.00 0.00 0.00 3.16
2804 5047 6.982899 AGTAGGTCCTTCCTTCTTCAGTATA 58.017 40.000 0.00 0.00 45.67 1.47
2818 5061 6.731448 AGGATTTTCAGAGTTAGTAGGTCCTT 59.269 38.462 0.00 0.00 0.00 3.36
2859 5111 4.398319 AGCAGTGTGGTAGCAATAAAACT 58.602 39.130 0.00 0.00 0.00 2.66
2862 5114 7.282224 CCTATTAAGCAGTGTGGTAGCAATAAA 59.718 37.037 0.00 0.00 0.00 1.40
2872 5124 4.487714 TCCTTCCTATTAAGCAGTGTGG 57.512 45.455 0.00 0.00 0.00 4.17
2883 5135 8.585018 CAACTTAACCACATTTTCCTTCCTATT 58.415 33.333 0.00 0.00 0.00 1.73
2915 5173 1.202818 AGGAAGTCCAACCACAGCTTC 60.203 52.381 0.00 0.00 38.89 3.86
3027 5285 5.376756 ACTTTTACTTGGTGGAGGTGTTA 57.623 39.130 0.00 0.00 0.00 2.41
3049 5307 7.655521 TCTTCCTTCCGATTTCTTATGTCTA 57.344 36.000 0.00 0.00 0.00 2.59
3055 5313 7.620880 TCATTCTTCTTCCTTCCGATTTCTTA 58.379 34.615 0.00 0.00 0.00 2.10
3059 5317 5.124617 GCTTCATTCTTCTTCCTTCCGATTT 59.875 40.000 0.00 0.00 0.00 2.17
3060 5318 4.637977 GCTTCATTCTTCTTCCTTCCGATT 59.362 41.667 0.00 0.00 0.00 3.34
3061 5319 4.080638 AGCTTCATTCTTCTTCCTTCCGAT 60.081 41.667 0.00 0.00 0.00 4.18
3062 5320 3.261897 AGCTTCATTCTTCTTCCTTCCGA 59.738 43.478 0.00 0.00 0.00 4.55
3063 5321 3.373439 CAGCTTCATTCTTCTTCCTTCCG 59.627 47.826 0.00 0.00 0.00 4.30
3064 5322 4.583871 TCAGCTTCATTCTTCTTCCTTCC 58.416 43.478 0.00 0.00 0.00 3.46
3065 5323 5.106357 GGTTCAGCTTCATTCTTCTTCCTTC 60.106 44.000 0.00 0.00 0.00 3.46
3066 5324 4.764308 GGTTCAGCTTCATTCTTCTTCCTT 59.236 41.667 0.00 0.00 0.00 3.36
3067 5325 4.042684 AGGTTCAGCTTCATTCTTCTTCCT 59.957 41.667 0.00 0.00 0.00 3.36
3068 5326 4.331108 AGGTTCAGCTTCATTCTTCTTCC 58.669 43.478 0.00 0.00 0.00 3.46
3069 5327 5.471456 TCAAGGTTCAGCTTCATTCTTCTTC 59.529 40.000 0.00 0.00 0.00 2.87
3070 5328 5.380043 TCAAGGTTCAGCTTCATTCTTCTT 58.620 37.500 0.00 0.00 0.00 2.52
3071 5329 4.978099 TCAAGGTTCAGCTTCATTCTTCT 58.022 39.130 0.00 0.00 0.00 2.85
3078 5336 7.149569 CTGAATTATTCAAGGTTCAGCTTCA 57.850 36.000 9.05 0.00 40.51 3.02
3208 5494 4.885907 AGCATGTCAATTGAGGTTCTATGG 59.114 41.667 8.80 0.00 0.00 2.74
3217 5503 4.694509 GGGATAGCTAGCATGTCAATTGAG 59.305 45.833 18.83 0.00 0.00 3.02
3275 5561 4.902443 TCATCGTTGCAACTAAAAACCA 57.098 36.364 26.09 0.51 0.00 3.67
3312 5712 2.954318 CCCTGGACCTGCATCTATTTTG 59.046 50.000 0.00 0.00 0.00 2.44
3334 5734 0.675633 GCACTGCCCACAACAAAGAT 59.324 50.000 0.00 0.00 0.00 2.40
3339 5739 0.110295 ATACTGCACTGCCCACAACA 59.890 50.000 0.00 0.00 0.00 3.33
3359 5759 8.547894 TGTCAATAAATCGTAACTGATATGCAC 58.452 33.333 0.00 0.00 0.00 4.57
3372 5772 3.599343 TCTGCTGCTGTCAATAAATCGT 58.401 40.909 0.00 0.00 0.00 3.73
3383 5786 3.054875 TGGATATGACTTTCTGCTGCTGT 60.055 43.478 0.00 0.00 0.00 4.40
3401 5804 4.985538 ACTTCATACAACACCAACTGGAT 58.014 39.130 1.86 0.00 38.94 3.41
3417 5820 3.027412 ACGTCAGATCCTGCTACTTCAT 58.973 45.455 0.00 0.00 0.00 2.57
3438 5841 3.345508 TCGCTGTCAGTAGAGGAACTA 57.654 47.619 0.93 0.00 41.55 2.24
3566 6142 1.602311 CTCCAAAGACTTGCTGCACT 58.398 50.000 0.00 0.00 0.00 4.40
3619 6195 2.300623 CGAAGCGGAAGTGAAAAGTG 57.699 50.000 0.00 0.00 0.00 3.16
3632 6208 2.294132 GAAGGGGGTCTACCGAAGCG 62.294 65.000 0.00 0.00 41.60 4.68
3633 6209 1.262640 TGAAGGGGGTCTACCGAAGC 61.263 60.000 0.00 0.00 41.60 3.86
3634 6210 1.066358 GTTGAAGGGGGTCTACCGAAG 60.066 57.143 0.00 0.00 41.60 3.79
3635 6211 0.978907 GTTGAAGGGGGTCTACCGAA 59.021 55.000 0.00 0.00 41.60 4.30
3636 6212 0.178926 TGTTGAAGGGGGTCTACCGA 60.179 55.000 0.00 0.00 41.60 4.69
3637 6213 0.036671 GTGTTGAAGGGGGTCTACCG 60.037 60.000 0.00 0.00 41.60 4.02
3638 6214 1.061546 TGTGTTGAAGGGGGTCTACC 58.938 55.000 0.00 0.00 39.11 3.18
3639 6215 2.552373 CCTTGTGTTGAAGGGGGTCTAC 60.552 54.545 0.00 0.00 39.19 2.59
3640 6216 1.702957 CCTTGTGTTGAAGGGGGTCTA 59.297 52.381 0.00 0.00 39.19 2.59
3641 6217 0.478507 CCTTGTGTTGAAGGGGGTCT 59.521 55.000 0.00 0.00 39.19 3.85
3642 6218 0.476771 TCCTTGTGTTGAAGGGGGTC 59.523 55.000 0.00 0.00 42.63 4.46
3643 6219 1.158007 ATCCTTGTGTTGAAGGGGGT 58.842 50.000 0.00 0.00 42.63 4.95
3644 6220 1.549203 CATCCTTGTGTTGAAGGGGG 58.451 55.000 0.00 0.00 42.63 5.40
3645 6221 1.549203 CCATCCTTGTGTTGAAGGGG 58.451 55.000 0.00 0.00 42.63 4.79
3646 6222 0.890683 GCCATCCTTGTGTTGAAGGG 59.109 55.000 0.00 0.00 42.63 3.95
3647 6223 1.915141 AGCCATCCTTGTGTTGAAGG 58.085 50.000 0.00 0.00 43.61 3.46
3648 6224 4.326826 TCTTAGCCATCCTTGTGTTGAAG 58.673 43.478 0.00 0.00 0.00 3.02
3649 6225 4.365514 TCTTAGCCATCCTTGTGTTGAA 57.634 40.909 0.00 0.00 0.00 2.69
3650 6226 4.574674 ATCTTAGCCATCCTTGTGTTGA 57.425 40.909 0.00 0.00 0.00 3.18
3651 6227 4.460382 ACAATCTTAGCCATCCTTGTGTTG 59.540 41.667 0.00 0.00 0.00 3.33
3652 6228 4.666512 ACAATCTTAGCCATCCTTGTGTT 58.333 39.130 0.00 0.00 0.00 3.32
3653 6229 4.265073 GACAATCTTAGCCATCCTTGTGT 58.735 43.478 0.00 0.00 0.00 3.72
3654 6230 3.629398 GGACAATCTTAGCCATCCTTGTG 59.371 47.826 0.00 0.00 0.00 3.33
3655 6231 3.372025 GGGACAATCTTAGCCATCCTTGT 60.372 47.826 0.00 0.00 0.00 3.16
3656 6232 3.217626 GGGACAATCTTAGCCATCCTTG 58.782 50.000 0.00 0.00 0.00 3.61
3657 6233 2.852449 TGGGACAATCTTAGCCATCCTT 59.148 45.455 0.00 0.00 31.92 3.36
3658 6234 2.492025 TGGGACAATCTTAGCCATCCT 58.508 47.619 0.00 0.00 31.92 3.24
3670 6246 7.449808 CCGTTATGAAGGGGTATGGGACAAT 62.450 48.000 0.00 0.00 35.57 2.71
3671 6247 6.211677 CCGTTATGAAGGGGTATGGGACAA 62.212 50.000 0.00 0.00 35.57 3.18
3672 6248 4.769944 CCGTTATGAAGGGGTATGGGACA 61.770 52.174 0.00 0.00 36.15 4.02
3673 6249 2.224450 CCGTTATGAAGGGGTATGGGAC 60.224 54.545 0.00 0.00 32.85 4.46
3674 6250 2.051692 CCGTTATGAAGGGGTATGGGA 58.948 52.381 0.00 0.00 32.85 4.37
3675 6251 2.038557 CTCCGTTATGAAGGGGTATGGG 59.961 54.545 0.00 0.00 37.06 4.00
3676 6252 2.038557 CCTCCGTTATGAAGGGGTATGG 59.961 54.545 0.00 0.00 37.06 2.74
3677 6253 2.038557 CCCTCCGTTATGAAGGGGTATG 59.961 54.545 0.00 0.00 37.06 2.39
3678 6254 2.335933 CCCTCCGTTATGAAGGGGTAT 58.664 52.381 0.00 0.00 37.06 2.73
3679 6255 1.797320 CCCTCCGTTATGAAGGGGTA 58.203 55.000 0.00 0.00 37.06 3.69
3680 6256 1.632965 GCCCTCCGTTATGAAGGGGT 61.633 60.000 8.67 0.00 40.07 4.95
3681 6257 1.148498 GCCCTCCGTTATGAAGGGG 59.852 63.158 8.67 0.00 40.07 4.79
3682 6258 0.463833 GTGCCCTCCGTTATGAAGGG 60.464 60.000 2.17 2.17 42.50 3.95
3683 6259 0.810031 CGTGCCCTCCGTTATGAAGG 60.810 60.000 0.00 0.00 0.00 3.46
3684 6260 0.174845 TCGTGCCCTCCGTTATGAAG 59.825 55.000 0.00 0.00 0.00 3.02
3685 6261 0.828022 ATCGTGCCCTCCGTTATGAA 59.172 50.000 0.00 0.00 0.00 2.57
3686 6262 1.611977 CTATCGTGCCCTCCGTTATGA 59.388 52.381 0.00 0.00 0.00 2.15
3687 6263 1.336887 CCTATCGTGCCCTCCGTTATG 60.337 57.143 0.00 0.00 0.00 1.90
3688 6264 0.966920 CCTATCGTGCCCTCCGTTAT 59.033 55.000 0.00 0.00 0.00 1.89
3689 6265 1.741327 GCCTATCGTGCCCTCCGTTA 61.741 60.000 0.00 0.00 0.00 3.18
3690 6266 3.090219 GCCTATCGTGCCCTCCGTT 62.090 63.158 0.00 0.00 0.00 4.44
3691 6267 3.537874 GCCTATCGTGCCCTCCGT 61.538 66.667 0.00 0.00 0.00 4.69
3692 6268 1.532604 TATGCCTATCGTGCCCTCCG 61.533 60.000 0.00 0.00 0.00 4.63
3693 6269 0.685097 TTATGCCTATCGTGCCCTCC 59.315 55.000 0.00 0.00 0.00 4.30
3694 6270 2.770164 ATTATGCCTATCGTGCCCTC 57.230 50.000 0.00 0.00 0.00 4.30
3695 6271 3.149196 CAAATTATGCCTATCGTGCCCT 58.851 45.455 0.00 0.00 0.00 5.19
3696 6272 3.146066 TCAAATTATGCCTATCGTGCCC 58.854 45.455 0.00 0.00 0.00 5.36
3697 6273 4.829064 TTCAAATTATGCCTATCGTGCC 57.171 40.909 0.00 0.00 0.00 5.01
3698 6274 6.972328 TCTTTTTCAAATTATGCCTATCGTGC 59.028 34.615 0.00 0.00 0.00 5.34
3699 6275 7.645340 CCTCTTTTTCAAATTATGCCTATCGTG 59.355 37.037 0.00 0.00 0.00 4.35
3700 6276 7.682021 GCCTCTTTTTCAAATTATGCCTATCGT 60.682 37.037 0.00 0.00 0.00 3.73
3701 6277 6.638468 GCCTCTTTTTCAAATTATGCCTATCG 59.362 38.462 0.00 0.00 0.00 2.92
3702 6278 6.925718 GGCCTCTTTTTCAAATTATGCCTATC 59.074 38.462 0.00 0.00 32.53 2.08
3703 6279 6.461509 CGGCCTCTTTTTCAAATTATGCCTAT 60.462 38.462 0.00 0.00 33.08 2.57
3704 6280 5.163561 CGGCCTCTTTTTCAAATTATGCCTA 60.164 40.000 0.00 0.00 33.08 3.93
3705 6281 4.381932 CGGCCTCTTTTTCAAATTATGCCT 60.382 41.667 0.00 0.00 33.08 4.75
3706 6282 3.865164 CGGCCTCTTTTTCAAATTATGCC 59.135 43.478 0.00 0.00 0.00 4.40
3707 6283 3.306973 GCGGCCTCTTTTTCAAATTATGC 59.693 43.478 0.00 0.00 0.00 3.14
3708 6284 3.865164 GGCGGCCTCTTTTTCAAATTATG 59.135 43.478 12.87 0.00 0.00 1.90
3709 6285 3.118775 GGGCGGCCTCTTTTTCAAATTAT 60.119 43.478 22.87 0.00 0.00 1.28
3710 6286 2.232696 GGGCGGCCTCTTTTTCAAATTA 59.767 45.455 22.87 0.00 0.00 1.40
3711 6287 1.001974 GGGCGGCCTCTTTTTCAAATT 59.998 47.619 22.87 0.00 0.00 1.82
3712 6288 0.608130 GGGCGGCCTCTTTTTCAAAT 59.392 50.000 22.87 0.00 0.00 2.32
3713 6289 0.757188 TGGGCGGCCTCTTTTTCAAA 60.757 50.000 29.87 0.62 0.00 2.69
3714 6290 1.152652 TGGGCGGCCTCTTTTTCAA 60.153 52.632 29.87 1.49 0.00 2.69
3715 6291 1.901464 GTGGGCGGCCTCTTTTTCA 60.901 57.895 29.87 2.35 0.00 2.69
3716 6292 1.587043 GAGTGGGCGGCCTCTTTTTC 61.587 60.000 30.22 16.05 0.00 2.29
3717 6293 1.603739 GAGTGGGCGGCCTCTTTTT 60.604 57.895 30.22 11.40 0.00 1.94
3718 6294 2.034221 GAGTGGGCGGCCTCTTTT 59.966 61.111 30.22 11.77 0.00 2.27
3719 6295 4.394712 CGAGTGGGCGGCCTCTTT 62.395 66.667 30.22 12.50 0.00 2.52
3728 6304 4.767255 CAGGGACAGCGAGTGGGC 62.767 72.222 0.00 0.00 0.00 5.36
3729 6305 4.087892 CCAGGGACAGCGAGTGGG 62.088 72.222 0.00 0.00 0.00 4.61
3730 6306 4.767255 GCCAGGGACAGCGAGTGG 62.767 72.222 0.00 0.00 0.00 4.00
3736 6312 4.008933 ACAGTCGCCAGGGACAGC 62.009 66.667 16.08 0.00 39.42 4.40
3737 6313 2.047844 CACAGTCGCCAGGGACAG 60.048 66.667 16.08 10.96 39.42 3.51
3738 6314 3.625897 CCACAGTCGCCAGGGACA 61.626 66.667 16.08 0.00 39.42 4.02
3748 6324 2.676471 ATTTGGGGCGCCACAGTC 60.676 61.111 33.21 11.79 0.00 3.51
3749 6325 2.676471 GATTTGGGGCGCCACAGT 60.676 61.111 33.21 24.72 0.00 3.55
3750 6326 2.053865 ATGATTTGGGGCGCCACAG 61.054 57.895 33.21 0.00 0.00 3.66
3751 6327 2.037049 ATGATTTGGGGCGCCACA 59.963 55.556 31.83 31.83 0.00 4.17
3752 6328 1.603236 TTCATGATTTGGGGCGCCAC 61.603 55.000 30.85 28.40 0.00 5.01
3753 6329 1.304796 TTCATGATTTGGGGCGCCA 60.305 52.632 30.85 20.22 0.00 5.69
3754 6330 1.438814 CTTCATGATTTGGGGCGCC 59.561 57.895 21.18 21.18 0.00 6.53
3755 6331 1.227060 GCTTCATGATTTGGGGCGC 60.227 57.895 0.00 0.00 0.00 6.53
3756 6332 1.438814 GGCTTCATGATTTGGGGCG 59.561 57.895 0.00 0.00 0.00 6.13
3757 6333 1.438814 CGGCTTCATGATTTGGGGC 59.561 57.895 0.00 0.00 0.00 5.80
3758 6334 1.438814 GCGGCTTCATGATTTGGGG 59.561 57.895 0.00 0.00 0.00 4.96
3759 6335 1.039233 AGGCGGCTTCATGATTTGGG 61.039 55.000 5.25 0.00 0.00 4.12
3760 6336 0.101759 CAGGCGGCTTCATGATTTGG 59.898 55.000 9.66 0.00 0.00 3.28
3761 6337 0.526954 GCAGGCGGCTTCATGATTTG 60.527 55.000 9.66 0.00 40.25 2.32
3762 6338 1.669999 GGCAGGCGGCTTCATGATTT 61.670 55.000 9.66 0.00 44.01 2.17
3763 6339 2.123428 GGCAGGCGGCTTCATGATT 61.123 57.895 9.66 0.00 44.01 2.57
3764 6340 2.517875 GGCAGGCGGCTTCATGAT 60.518 61.111 9.66 0.00 44.01 2.45
3765 6341 3.348554 ATGGCAGGCGGCTTCATGA 62.349 57.895 19.36 0.00 44.01 3.07
3766 6342 2.831742 ATGGCAGGCGGCTTCATG 60.832 61.111 19.36 7.56 44.01 3.07
3767 6343 2.831742 CATGGCAGGCGGCTTCAT 60.832 61.111 9.66 13.68 44.01 2.57
3773 6349 2.442643 ATTTCCCATGGCAGGCGG 60.443 61.111 6.09 0.00 0.00 6.13
3774 6350 2.788640 CCATTTCCCATGGCAGGCG 61.789 63.158 6.09 0.00 31.75 5.52
3775 6351 2.437396 CCCATTTCCCATGGCAGGC 61.437 63.158 6.09 0.00 37.85 4.85
3776 6352 0.105349 ATCCCATTTCCCATGGCAGG 60.105 55.000 6.09 2.71 37.85 4.85
3777 6353 1.335145 GATCCCATTTCCCATGGCAG 58.665 55.000 6.09 0.00 37.85 4.85
3778 6354 0.467844 CGATCCCATTTCCCATGGCA 60.468 55.000 6.09 0.00 37.85 4.92
3779 6355 1.809567 GCGATCCCATTTCCCATGGC 61.810 60.000 6.09 0.00 37.85 4.40
3780 6356 0.178981 AGCGATCCCATTTCCCATGG 60.179 55.000 4.14 4.14 38.88 3.66
3781 6357 0.956633 CAGCGATCCCATTTCCCATG 59.043 55.000 0.00 0.00 0.00 3.66
3782 6358 0.178981 CCAGCGATCCCATTTCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
3783 6359 1.227102 CCAGCGATCCCATTTCCCA 59.773 57.895 0.00 0.00 0.00 4.37
3784 6360 0.536006 CTCCAGCGATCCCATTTCCC 60.536 60.000 0.00 0.00 0.00 3.97
3785 6361 1.169034 GCTCCAGCGATCCCATTTCC 61.169 60.000 0.00 0.00 0.00 3.13
3786 6362 2.325218 GCTCCAGCGATCCCATTTC 58.675 57.895 0.00 0.00 0.00 2.17
3787 6363 4.567318 GCTCCAGCGATCCCATTT 57.433 55.556 0.00 0.00 0.00 2.32
3806 6382 4.873129 CACGACGAGGGATGGCGG 62.873 72.222 0.00 0.00 0.00 6.13
3807 6383 3.822192 TCACGACGAGGGATGGCG 61.822 66.667 0.00 0.00 0.00 5.69
3808 6384 2.202756 GTCACGACGAGGGATGGC 60.203 66.667 0.00 0.00 33.06 4.40
3853 6429 4.504916 CTCGTGAGGAGCTGGCGG 62.505 72.222 0.00 0.00 35.63 6.13
3868 6444 3.541713 CTAGGTGCCCTCCCGCTC 61.542 72.222 0.00 0.00 34.61 5.03
3869 6445 4.400251 ACTAGGTGCCCTCCCGCT 62.400 66.667 0.00 0.00 34.61 5.52
3870 6446 3.851128 GACTAGGTGCCCTCCCGC 61.851 72.222 0.00 0.00 34.61 6.13
3871 6447 3.155167 GGACTAGGTGCCCTCCCG 61.155 72.222 0.00 0.00 34.61 5.14
3872 6448 2.768769 GGGACTAGGTGCCCTCCC 60.769 72.222 9.62 4.51 38.12 4.30
3899 6475 3.443045 AAAGCCTTGCCATCGCCG 61.443 61.111 0.00 0.00 0.00 6.46
3900 6476 2.182537 CAAAGCCTTGCCATCGCC 59.817 61.111 0.00 0.00 0.00 5.54
3940 6516 3.680920 TTCCTCCTCCTCCCTCGCC 62.681 68.421 0.00 0.00 0.00 5.54
3941 6517 2.042843 TTCCTCCTCCTCCCTCGC 60.043 66.667 0.00 0.00 0.00 5.03
3942 6518 0.467290 CTCTTCCTCCTCCTCCCTCG 60.467 65.000 0.00 0.00 0.00 4.63
3943 6519 0.930726 TCTCTTCCTCCTCCTCCCTC 59.069 60.000 0.00 0.00 0.00 4.30
3944 6520 0.933700 CTCTCTTCCTCCTCCTCCCT 59.066 60.000 0.00 0.00 0.00 4.20
3945 6521 0.105709 CCTCTCTTCCTCCTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
3946 6522 0.105709 CCCTCTCTTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
3947 6523 0.105709 CCCCTCTCTTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
3948 6524 1.598856 CCCCCTCTCTTCCTCCTCCT 61.599 65.000 0.00 0.00 0.00 3.69
3949 6525 1.074850 CCCCCTCTCTTCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
3950 6526 0.105709 CTCCCCCTCTCTTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
3951 6527 0.858139 ACTCCCCCTCTCTTCCTCCT 60.858 60.000 0.00 0.00 0.00 3.69
3952 6528 0.397957 GACTCCCCCTCTCTTCCTCC 60.398 65.000 0.00 0.00 0.00 4.30
3953 6529 0.753848 CGACTCCCCCTCTCTTCCTC 60.754 65.000 0.00 0.00 0.00 3.71
3954 6530 1.308326 CGACTCCCCCTCTCTTCCT 59.692 63.158 0.00 0.00 0.00 3.36
3955 6531 1.758906 CCGACTCCCCCTCTCTTCC 60.759 68.421 0.00 0.00 0.00 3.46
3956 6532 1.758906 CCCGACTCCCCCTCTCTTC 60.759 68.421 0.00 0.00 0.00 2.87
3957 6533 2.364961 CCCGACTCCCCCTCTCTT 59.635 66.667 0.00 0.00 0.00 2.85
3958 6534 3.756783 CCCCGACTCCCCCTCTCT 61.757 72.222 0.00 0.00 0.00 3.10
3959 6535 4.862823 CCCCCGACTCCCCCTCTC 62.863 77.778 0.00 0.00 0.00 3.20
3981 6557 3.115017 TAGGAGGCCCCCAGATCCC 62.115 68.421 5.89 0.00 34.66 3.85
3982 6558 1.537643 CTAGGAGGCCCCCAGATCC 60.538 68.421 5.89 1.43 34.66 3.36
3983 6559 2.220586 GCTAGGAGGCCCCCAGATC 61.221 68.421 5.89 0.00 34.66 2.75
3984 6560 2.122189 GCTAGGAGGCCCCCAGAT 60.122 66.667 5.89 0.00 34.66 2.90
3985 6561 4.499116 GGCTAGGAGGCCCCCAGA 62.499 72.222 5.89 0.00 45.92 3.86
4011 6587 4.816984 TCTCTCCCGAGTCGCCCC 62.817 72.222 7.12 0.00 38.45 5.80
4012 6588 3.519930 GTCTCTCCCGAGTCGCCC 61.520 72.222 7.12 0.00 38.45 6.13
4013 6589 3.878519 CGTCTCTCCCGAGTCGCC 61.879 72.222 7.12 0.00 40.68 5.54
4014 6590 3.878519 CCGTCTCTCCCGAGTCGC 61.879 72.222 7.12 0.00 43.99 5.19
4015 6591 3.203412 CCCGTCTCTCCCGAGTCG 61.203 72.222 5.29 5.29 44.61 4.18
4016 6592 1.820481 CTCCCGTCTCTCCCGAGTC 60.820 68.421 0.00 0.00 38.45 3.36
4017 6593 2.272797 CTCCCGTCTCTCCCGAGT 59.727 66.667 0.00 0.00 38.45 4.18
4018 6594 2.517402 CCTCCCGTCTCTCCCGAG 60.517 72.222 0.00 0.00 38.67 4.63
4019 6595 4.124943 CCCTCCCGTCTCTCCCGA 62.125 72.222 0.00 0.00 0.00 5.14
4020 6596 4.124943 TCCCTCCCGTCTCTCCCG 62.125 72.222 0.00 0.00 0.00 5.14
4021 6597 2.442458 GTCCCTCCCGTCTCTCCC 60.442 72.222 0.00 0.00 0.00 4.30
4022 6598 1.454295 GAGTCCCTCCCGTCTCTCC 60.454 68.421 0.00 0.00 0.00 3.71
4023 6599 1.454295 GGAGTCCCTCCCGTCTCTC 60.454 68.421 0.00 0.00 44.36 3.20
4024 6600 2.684735 GGAGTCCCTCCCGTCTCT 59.315 66.667 0.00 0.00 44.36 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.