Multiple sequence alignment - TraesCS2A01G020600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G020600 chr2A 100.000 3527 0 0 1 3527 9776328 9779854 0.000000e+00 6514.0
1 TraesCS2A01G020600 chr2A 88.298 1974 191 23 494 2447 40342757 40340804 0.000000e+00 2329.0
2 TraesCS2A01G020600 chr2A 91.811 1270 71 19 445 1704 10384252 10383006 0.000000e+00 1738.0
3 TraesCS2A01G020600 chr2A 97.592 955 19 1 2573 3527 9200891 9199941 0.000000e+00 1633.0
4 TraesCS2A01G020600 chr2A 96.305 893 31 2 1547 2438 9201991 9201100 0.000000e+00 1465.0
5 TraesCS2A01G020600 chr2A 78.964 1873 330 44 613 2447 10197977 10199823 0.000000e+00 1218.0
6 TraesCS2A01G020600 chr2A 80.074 1616 277 26 855 2443 20502513 20504110 0.000000e+00 1158.0
7 TraesCS2A01G020600 chr2A 90.052 764 69 6 804 1561 9203452 9202690 0.000000e+00 983.0
8 TraesCS2A01G020600 chr2A 84.096 918 120 17 2573 3471 40340804 40339894 0.000000e+00 863.0
9 TraesCS2A01G020600 chr2A 86.641 786 93 6 2573 3349 10382876 10382094 0.000000e+00 859.0
10 TraesCS2A01G020600 chr2A 82.624 564 73 13 2573 3131 10375290 10375833 3.190000e-130 475.0
11 TraesCS2A01G020600 chr2A 90.939 309 21 2 15 316 10390095 10389787 3.280000e-110 409.0
12 TraesCS2A01G020600 chr2A 93.805 113 7 0 2335 2447 9201003 9200891 1.680000e-38 171.0
13 TraesCS2A01G020600 chr2A 93.805 113 7 0 2335 2447 10382988 10382876 1.680000e-38 171.0
14 TraesCS2A01G020600 chr2D 89.322 1976 169 22 494 2447 36435888 36433933 0.000000e+00 2442.0
15 TraesCS2A01G020600 chr2D 78.529 1863 327 51 613 2442 10096577 10098399 0.000000e+00 1157.0
16 TraesCS2A01G020600 chr2D 81.019 1491 249 22 979 2443 19462194 19463676 0.000000e+00 1155.0
17 TraesCS2A01G020600 chr2D 78.057 1873 349 46 615 2447 19579902 19581752 0.000000e+00 1125.0
18 TraesCS2A01G020600 chr2D 83.951 891 115 19 2573 3450 36433933 36433058 0.000000e+00 828.0
19 TraesCS2A01G020600 chr2D 77.778 315 62 8 2573 2880 10023417 10023104 1.670000e-43 187.0
20 TraesCS2A01G020600 chr2D 79.134 254 48 5 2631 2880 10098465 10098717 1.680000e-38 171.0
21 TraesCS2A01G020600 chr2D 100.000 35 0 0 2472 2506 187457018 187456984 8.170000e-07 65.8
22 TraesCS2A01G020600 chr2B 78.575 1867 335 45 613 2447 13495238 13493405 0.000000e+00 1171.0
23 TraesCS2A01G020600 chr2B 83.819 927 128 12 1533 2447 13480862 13479946 0.000000e+00 861.0
24 TraesCS2A01G020600 chr2B 77.872 470 72 23 2921 3382 13479688 13479243 2.700000e-66 263.0
25 TraesCS2A01G020600 chr2B 78.750 240 44 5 2646 2880 13736707 13736944 1.700000e-33 154.0
26 TraesCS2A01G020600 chr6A 100.000 61 0 0 2472 2532 2316526 2316586 2.880000e-21 113.0
27 TraesCS2A01G020600 chrUn 78.049 164 36 0 1222 1385 2092474 2092311 1.730000e-18 104.0
28 TraesCS2A01G020600 chrUn 76.687 163 38 0 1223 1385 207757500 207757338 1.350000e-14 91.6
29 TraesCS2A01G020600 chrUn 95.455 44 1 1 2528 2571 266527044 266527002 6.320000e-08 69.4
30 TraesCS2A01G020600 chrUn 97.368 38 1 0 2534 2571 251416682 251416645 8.170000e-07 65.8
31 TraesCS2A01G020600 chr3A 100.000 55 0 0 2472 2526 689102951 689102897 6.230000e-18 102.0
32 TraesCS2A01G020600 chr4D 91.379 58 5 0 2472 2529 270702008 270702065 2.920000e-11 80.5
33 TraesCS2A01G020600 chr4D 97.561 41 1 0 2531 2571 123420203 123420243 1.760000e-08 71.3
34 TraesCS2A01G020600 chr4D 97.561 41 1 0 2531 2571 134991482 134991442 1.760000e-08 71.3
35 TraesCS2A01G020600 chr4D 97.561 41 1 0 2531 2571 241116657 241116617 1.760000e-08 71.3
36 TraesCS2A01G020600 chr4D 97.561 41 1 0 2531 2571 398039539 398039499 1.760000e-08 71.3
37 TraesCS2A01G020600 chr4D 97.561 41 1 0 2531 2571 448275871 448275831 1.760000e-08 71.3
38 TraesCS2A01G020600 chr1B 90.164 61 6 0 2472 2532 347055094 347055034 2.920000e-11 80.5
39 TraesCS2A01G020600 chr1D 97.561 41 1 0 2531 2571 269414134 269414174 1.760000e-08 71.3
40 TraesCS2A01G020600 chr1D 97.561 41 1 0 2531 2571 298347700 298347660 1.760000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G020600 chr2A 9776328 9779854 3526 False 6514.000000 6514 100.000000 1 3527 1 chr2A.!!$F1 3526
1 TraesCS2A01G020600 chr2A 40339894 40342757 2863 True 1596.000000 2329 86.197000 494 3471 2 chr2A.!!$R4 2977
2 TraesCS2A01G020600 chr2A 10197977 10199823 1846 False 1218.000000 1218 78.964000 613 2447 1 chr2A.!!$F2 1834
3 TraesCS2A01G020600 chr2A 20502513 20504110 1597 False 1158.000000 1158 80.074000 855 2443 1 chr2A.!!$F4 1588
4 TraesCS2A01G020600 chr2A 9199941 9203452 3511 True 1063.000000 1633 94.438500 804 3527 4 chr2A.!!$R2 2723
5 TraesCS2A01G020600 chr2A 10382094 10384252 2158 True 922.666667 1738 90.752333 445 3349 3 chr2A.!!$R3 2904
6 TraesCS2A01G020600 chr2A 10375290 10375833 543 False 475.000000 475 82.624000 2573 3131 1 chr2A.!!$F3 558
7 TraesCS2A01G020600 chr2D 36433058 36435888 2830 True 1635.000000 2442 86.636500 494 3450 2 chr2D.!!$R3 2956
8 TraesCS2A01G020600 chr2D 19462194 19463676 1482 False 1155.000000 1155 81.019000 979 2443 1 chr2D.!!$F1 1464
9 TraesCS2A01G020600 chr2D 19579902 19581752 1850 False 1125.000000 1125 78.057000 615 2447 1 chr2D.!!$F2 1832
10 TraesCS2A01G020600 chr2D 10096577 10098717 2140 False 664.000000 1157 78.831500 613 2880 2 chr2D.!!$F3 2267
11 TraesCS2A01G020600 chr2B 13493405 13495238 1833 True 1171.000000 1171 78.575000 613 2447 1 chr2B.!!$R1 1834
12 TraesCS2A01G020600 chr2B 13479243 13480862 1619 True 562.000000 861 80.845500 1533 3382 2 chr2B.!!$R2 1849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.041839 CACGAGCACACAGTTCAAGC 60.042 55.0 0.00 0.00 0.00 4.01 F
306 307 0.460987 GCCGCTCTGCTATGTGAGTT 60.461 55.0 0.00 0.00 33.22 3.01 F
426 427 0.465824 GCTCGGTCTAGCCTCCTGTA 60.466 60.0 2.39 0.00 36.45 2.74 F
436 437 0.749454 GCCTCCTGTAACATGGCCTG 60.749 60.0 3.32 2.01 37.81 4.85 F
647 650 0.877649 CCTCACATGCGATTCCTCGG 60.878 60.0 0.00 0.00 45.15 4.63 F
2469 3474 0.810648 TTCATCTTCGGTGCCATTGC 59.189 50.0 0.00 0.00 38.26 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1247 1316 0.606673 GAGGTGCAACAGGAGGAACC 60.607 60.000 3.64 0.00 39.98 3.62 R
1836 2623 0.610232 GAGAGGTGGCAATGGCAAGT 60.610 55.000 12.09 0.77 43.71 3.16 R
2280 3070 2.684881 CTGTGCACACTTCTTGACCTTT 59.315 45.455 17.42 0.00 0.00 3.11 R
2450 3455 0.810648 GCAATGGCACCGAAGATGAA 59.189 50.000 0.00 0.00 40.72 2.57 R
2496 3501 0.093026 CGGACGCATTCAGTTCGTTC 59.907 55.000 0.00 0.00 35.98 3.95 R
3293 4321 0.625316 TAGCCAGCATGTGAATGGGT 59.375 50.000 14.45 14.45 46.13 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.926293 TCCCCAAATCTGGTCATCCC 59.074 55.000 0.00 0.00 41.72 3.85
20 21 0.106015 CCCCAAATCTGGTCATCCCC 60.106 60.000 0.00 0.00 41.72 4.81
21 22 0.630673 CCCAAATCTGGTCATCCCCA 59.369 55.000 0.00 0.00 41.72 4.96
22 23 1.218704 CCCAAATCTGGTCATCCCCAT 59.781 52.381 0.00 0.00 41.72 4.00
23 24 2.590821 CCAAATCTGGTCATCCCCATC 58.409 52.381 0.00 0.00 38.00 3.51
24 25 2.590821 CAAATCTGGTCATCCCCATCC 58.409 52.381 0.00 0.00 33.00 3.51
25 26 2.176364 CAAATCTGGTCATCCCCATCCT 59.824 50.000 0.00 0.00 33.00 3.24
26 27 1.739750 ATCTGGTCATCCCCATCCTC 58.260 55.000 0.00 0.00 33.00 3.71
27 28 0.760567 TCTGGTCATCCCCATCCTCG 60.761 60.000 0.00 0.00 33.00 4.63
28 29 1.002921 TGGTCATCCCCATCCTCGT 59.997 57.895 0.00 0.00 0.00 4.18
29 30 0.620410 TGGTCATCCCCATCCTCGTT 60.620 55.000 0.00 0.00 0.00 3.85
30 31 0.106894 GGTCATCCCCATCCTCGTTC 59.893 60.000 0.00 0.00 0.00 3.95
31 32 1.123928 GTCATCCCCATCCTCGTTCT 58.876 55.000 0.00 0.00 0.00 3.01
32 33 1.123077 TCATCCCCATCCTCGTTCTG 58.877 55.000 0.00 0.00 0.00 3.02
33 34 0.533755 CATCCCCATCCTCGTTCTGC 60.534 60.000 0.00 0.00 0.00 4.26
34 35 0.692419 ATCCCCATCCTCGTTCTGCT 60.692 55.000 0.00 0.00 0.00 4.24
35 36 1.144936 CCCCATCCTCGTTCTGCTC 59.855 63.158 0.00 0.00 0.00 4.26
36 37 1.617018 CCCCATCCTCGTTCTGCTCA 61.617 60.000 0.00 0.00 0.00 4.26
37 38 0.179089 CCCATCCTCGTTCTGCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
38 39 0.809241 CCATCCTCGTTCTGCTCAGC 60.809 60.000 0.00 0.00 0.00 4.26
39 40 0.809241 CATCCTCGTTCTGCTCAGCC 60.809 60.000 0.00 0.00 0.00 4.85
40 41 1.260538 ATCCTCGTTCTGCTCAGCCA 61.261 55.000 0.00 0.00 0.00 4.75
41 42 1.220206 CCTCGTTCTGCTCAGCCAT 59.780 57.895 0.00 0.00 0.00 4.40
42 43 1.088340 CCTCGTTCTGCTCAGCCATG 61.088 60.000 0.00 0.00 0.00 3.66
43 44 1.078918 TCGTTCTGCTCAGCCATGG 60.079 57.895 7.63 7.63 0.00 3.66
44 45 2.758089 CGTTCTGCTCAGCCATGGC 61.758 63.158 30.12 30.12 42.33 4.40
45 46 2.044650 TTCTGCTCAGCCATGGCC 60.045 61.111 33.14 18.09 43.17 5.36
46 47 3.982316 TTCTGCTCAGCCATGGCCG 62.982 63.158 33.14 24.04 43.17 6.13
47 48 4.478371 CTGCTCAGCCATGGCCGA 62.478 66.667 33.14 27.03 43.17 5.54
48 49 4.478371 TGCTCAGCCATGGCCGAG 62.478 66.667 36.00 36.00 45.55 4.63
50 51 3.473647 CTCAGCCATGGCCGAGGA 61.474 66.667 33.83 24.08 40.78 3.71
51 52 3.457625 CTCAGCCATGGCCGAGGAG 62.458 68.421 33.83 27.93 40.78 3.69
52 53 3.473647 CAGCCATGGCCGAGGAGA 61.474 66.667 33.14 0.00 43.17 3.71
53 54 3.474570 AGCCATGGCCGAGGAGAC 61.475 66.667 33.14 2.26 43.17 3.36
54 55 4.554036 GCCATGGCCGAGGAGACC 62.554 72.222 27.24 0.00 34.56 3.85
55 56 4.227134 CCATGGCCGAGGAGACCG 62.227 72.222 7.49 0.00 0.00 4.79
56 57 4.899239 CATGGCCGAGGAGACCGC 62.899 72.222 0.00 0.00 0.00 5.68
79 80 3.073735 CTCCGCTGAGCCTCCTGT 61.074 66.667 0.00 0.00 0.00 4.00
80 81 3.071206 TCCGCTGAGCCTCCTGTC 61.071 66.667 0.00 0.00 0.00 3.51
81 82 4.154347 CCGCTGAGCCTCCTGTCC 62.154 72.222 0.00 0.00 0.00 4.02
82 83 4.504916 CGCTGAGCCTCCTGTCCG 62.505 72.222 0.00 0.00 0.00 4.79
83 84 4.828925 GCTGAGCCTCCTGTCCGC 62.829 72.222 0.00 0.00 0.00 5.54
84 85 4.154347 CTGAGCCTCCTGTCCGCC 62.154 72.222 0.00 0.00 0.00 6.13
85 86 4.704103 TGAGCCTCCTGTCCGCCT 62.704 66.667 0.00 0.00 0.00 5.52
86 87 3.844090 GAGCCTCCTGTCCGCCTC 61.844 72.222 0.00 0.00 0.00 4.70
110 111 4.830765 GACCAGCGGCGCCATGTA 62.831 66.667 30.40 0.00 0.00 2.29
111 112 4.175337 ACCAGCGGCGCCATGTAT 62.175 61.111 30.40 11.67 0.00 2.29
112 113 3.349006 CCAGCGGCGCCATGTATC 61.349 66.667 30.40 7.46 0.00 2.24
113 114 2.280389 CAGCGGCGCCATGTATCT 60.280 61.111 30.40 9.77 0.00 1.98
114 115 1.889105 CAGCGGCGCCATGTATCTT 60.889 57.895 30.40 2.85 0.00 2.40
115 116 1.595382 AGCGGCGCCATGTATCTTC 60.595 57.895 30.40 3.00 0.00 2.87
116 117 2.607892 GCGGCGCCATGTATCTTCC 61.608 63.158 28.98 0.00 0.00 3.46
117 118 1.961277 CGGCGCCATGTATCTTCCC 60.961 63.158 28.98 0.00 0.00 3.97
118 119 1.600916 GGCGCCATGTATCTTCCCC 60.601 63.158 24.80 0.00 0.00 4.81
119 120 1.961277 GCGCCATGTATCTTCCCCG 60.961 63.158 0.00 0.00 0.00 5.73
120 121 1.445942 CGCCATGTATCTTCCCCGT 59.554 57.895 0.00 0.00 0.00 5.28
121 122 0.179056 CGCCATGTATCTTCCCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
122 123 1.308998 GCCATGTATCTTCCCCGTTG 58.691 55.000 0.00 0.00 0.00 4.10
123 124 1.308998 CCATGTATCTTCCCCGTTGC 58.691 55.000 0.00 0.00 0.00 4.17
124 125 1.308998 CATGTATCTTCCCCGTTGCC 58.691 55.000 0.00 0.00 0.00 4.52
125 126 0.182775 ATGTATCTTCCCCGTTGCCC 59.817 55.000 0.00 0.00 0.00 5.36
126 127 0.912487 TGTATCTTCCCCGTTGCCCT 60.912 55.000 0.00 0.00 0.00 5.19
127 128 0.255033 GTATCTTCCCCGTTGCCCTT 59.745 55.000 0.00 0.00 0.00 3.95
128 129 0.544697 TATCTTCCCCGTTGCCCTTC 59.455 55.000 0.00 0.00 0.00 3.46
129 130 1.208165 ATCTTCCCCGTTGCCCTTCT 61.208 55.000 0.00 0.00 0.00 2.85
130 131 1.675641 CTTCCCCGTTGCCCTTCTG 60.676 63.158 0.00 0.00 0.00 3.02
131 132 3.860930 TTCCCCGTTGCCCTTCTGC 62.861 63.158 0.00 0.00 0.00 4.26
132 133 4.351054 CCCCGTTGCCCTTCTGCT 62.351 66.667 0.00 0.00 0.00 4.24
133 134 2.747855 CCCGTTGCCCTTCTGCTC 60.748 66.667 0.00 0.00 0.00 4.26
134 135 3.121030 CCGTTGCCCTTCTGCTCG 61.121 66.667 0.00 0.00 0.00 5.03
135 136 2.357517 CGTTGCCCTTCTGCTCGT 60.358 61.111 0.00 0.00 0.00 4.18
136 137 2.671177 CGTTGCCCTTCTGCTCGTG 61.671 63.158 0.00 0.00 0.00 4.35
137 138 2.669569 TTGCCCTTCTGCTCGTGC 60.670 61.111 1.71 1.71 40.20 5.34
155 156 3.812019 GGAGCTTCTCGTCGCCGA 61.812 66.667 0.00 0.00 41.73 5.54
156 157 2.409651 GAGCTTCTCGTCGCCGAT 59.590 61.111 0.00 0.00 43.27 4.18
157 158 1.941734 GAGCTTCTCGTCGCCGATG 60.942 63.158 0.00 0.00 43.27 3.84
158 159 2.956964 GCTTCTCGTCGCCGATGG 60.957 66.667 6.46 0.00 43.27 3.51
159 160 2.956964 CTTCTCGTCGCCGATGGC 60.957 66.667 6.46 0.00 46.75 4.40
169 170 2.105128 CCGATGGCAGTCGTCCTC 59.895 66.667 14.88 0.00 39.89 3.71
170 171 2.105128 CGATGGCAGTCGTCCTCC 59.895 66.667 10.01 0.00 36.88 4.30
171 172 2.710902 CGATGGCAGTCGTCCTCCA 61.711 63.158 10.01 0.00 36.88 3.86
172 173 1.153549 GATGGCAGTCGTCCTCCAC 60.154 63.158 0.00 0.00 0.00 4.02
198 199 3.130227 CCTAGCTAGGCCGACCAC 58.870 66.667 26.62 0.00 39.06 4.16
199 200 2.722487 CTAGCTAGGCCGACCACG 59.278 66.667 13.32 0.00 39.06 4.94
200 201 1.822613 CTAGCTAGGCCGACCACGA 60.823 63.158 13.32 0.00 42.66 4.35
201 202 1.787057 CTAGCTAGGCCGACCACGAG 61.787 65.000 13.32 0.00 42.66 4.18
202 203 4.874977 GCTAGGCCGACCACGAGC 62.875 72.222 0.00 0.00 42.66 5.03
203 204 3.449227 CTAGGCCGACCACGAGCA 61.449 66.667 0.00 0.00 42.66 4.26
204 205 3.701604 CTAGGCCGACCACGAGCAC 62.702 68.421 0.00 0.00 42.66 4.40
207 208 4.961511 GCCGACCACGAGCACACA 62.962 66.667 0.00 0.00 42.66 3.72
208 209 2.734723 CCGACCACGAGCACACAG 60.735 66.667 0.00 0.00 42.66 3.66
209 210 2.027605 CGACCACGAGCACACAGT 59.972 61.111 0.00 0.00 42.66 3.55
210 211 1.591594 CGACCACGAGCACACAGTT 60.592 57.895 0.00 0.00 42.66 3.16
211 212 1.548973 CGACCACGAGCACACAGTTC 61.549 60.000 0.00 0.00 42.66 3.01
212 213 0.529773 GACCACGAGCACACAGTTCA 60.530 55.000 0.00 0.00 0.00 3.18
213 214 0.107897 ACCACGAGCACACAGTTCAA 60.108 50.000 0.00 0.00 0.00 2.69
214 215 0.583438 CCACGAGCACACAGTTCAAG 59.417 55.000 0.00 0.00 0.00 3.02
215 216 0.041839 CACGAGCACACAGTTCAAGC 60.042 55.000 0.00 0.00 0.00 4.01
216 217 1.202568 CGAGCACACAGTTCAAGCG 59.797 57.895 0.00 0.00 0.00 4.68
217 218 1.082496 GAGCACACAGTTCAAGCGC 60.082 57.895 0.00 0.00 0.00 5.92
218 219 2.050985 GCACACAGTTCAAGCGCC 60.051 61.111 2.29 0.00 0.00 6.53
219 220 2.546494 GCACACAGTTCAAGCGCCT 61.546 57.895 2.29 0.00 0.00 5.52
220 221 1.571460 CACACAGTTCAAGCGCCTC 59.429 57.895 2.29 0.00 0.00 4.70
221 222 1.956170 ACACAGTTCAAGCGCCTCG 60.956 57.895 2.29 0.00 0.00 4.63
222 223 2.357517 ACAGTTCAAGCGCCTCGG 60.358 61.111 2.29 0.00 0.00 4.63
223 224 2.048222 CAGTTCAAGCGCCTCGGA 60.048 61.111 2.29 0.00 0.00 4.55
224 225 2.097038 CAGTTCAAGCGCCTCGGAG 61.097 63.158 2.29 0.00 0.00 4.63
225 226 2.261671 GTTCAAGCGCCTCGGAGA 59.738 61.111 2.29 0.00 0.00 3.71
226 227 1.153549 GTTCAAGCGCCTCGGAGAT 60.154 57.895 2.29 0.00 33.89 2.75
227 228 1.141881 TTCAAGCGCCTCGGAGATC 59.858 57.895 2.29 0.00 33.89 2.75
228 229 2.613739 TTCAAGCGCCTCGGAGATCG 62.614 60.000 2.29 10.53 40.90 3.69
238 239 4.632458 GGAGATCGCCGCGGACTC 62.632 72.222 33.48 27.01 0.00 3.36
239 240 4.632458 GAGATCGCCGCGGACTCC 62.632 72.222 33.48 14.74 0.00 3.85
282 283 4.457496 CGCGGACAGCTCCACCAT 62.457 66.667 0.00 0.00 45.59 3.55
283 284 2.821366 GCGGACAGCTCCACCATG 60.821 66.667 0.00 0.00 44.04 3.66
284 285 2.821366 CGGACAGCTCCACCATGC 60.821 66.667 0.00 0.00 36.12 4.06
285 286 2.439156 GGACAGCTCCACCATGCC 60.439 66.667 0.00 0.00 36.42 4.40
286 287 2.439156 GACAGCTCCACCATGCCC 60.439 66.667 0.00 0.00 0.00 5.36
287 288 4.415150 ACAGCTCCACCATGCCCG 62.415 66.667 0.00 0.00 0.00 6.13
301 302 4.227134 CCCGCCGCTCTGCTATGT 62.227 66.667 0.00 0.00 0.00 2.29
302 303 2.963854 CCGCCGCTCTGCTATGTG 60.964 66.667 0.00 0.00 0.00 3.21
303 304 2.104928 CGCCGCTCTGCTATGTGA 59.895 61.111 0.00 0.00 0.00 3.58
304 305 1.948138 CGCCGCTCTGCTATGTGAG 60.948 63.158 0.00 0.00 0.00 3.51
305 306 1.142748 GCCGCTCTGCTATGTGAGT 59.857 57.895 0.00 0.00 33.22 3.41
306 307 0.460987 GCCGCTCTGCTATGTGAGTT 60.461 55.000 0.00 0.00 33.22 3.01
307 308 1.565305 CCGCTCTGCTATGTGAGTTC 58.435 55.000 0.00 0.00 33.22 3.01
308 309 1.135915 CCGCTCTGCTATGTGAGTTCT 59.864 52.381 0.00 0.00 33.22 3.01
309 310 2.417924 CCGCTCTGCTATGTGAGTTCTT 60.418 50.000 0.00 0.00 33.22 2.52
310 311 2.857152 CGCTCTGCTATGTGAGTTCTTC 59.143 50.000 0.00 0.00 33.22 2.87
311 312 3.194062 GCTCTGCTATGTGAGTTCTTCC 58.806 50.000 0.00 0.00 33.22 3.46
312 313 3.443037 CTCTGCTATGTGAGTTCTTCCG 58.557 50.000 0.00 0.00 0.00 4.30
313 314 3.089284 TCTGCTATGTGAGTTCTTCCGA 58.911 45.455 0.00 0.00 0.00 4.55
314 315 3.129462 TCTGCTATGTGAGTTCTTCCGAG 59.871 47.826 0.00 0.00 0.00 4.63
315 316 2.826128 TGCTATGTGAGTTCTTCCGAGT 59.174 45.455 0.00 0.00 0.00 4.18
316 317 3.258372 TGCTATGTGAGTTCTTCCGAGTT 59.742 43.478 0.00 0.00 0.00 3.01
317 318 3.860536 GCTATGTGAGTTCTTCCGAGTTC 59.139 47.826 0.00 0.00 0.00 3.01
318 319 2.814280 TGTGAGTTCTTCCGAGTTCC 57.186 50.000 0.00 0.00 0.00 3.62
319 320 1.343465 TGTGAGTTCTTCCGAGTTCCC 59.657 52.381 0.00 0.00 0.00 3.97
320 321 1.619332 GTGAGTTCTTCCGAGTTCCCT 59.381 52.381 0.00 0.00 0.00 4.20
321 322 2.037381 GTGAGTTCTTCCGAGTTCCCTT 59.963 50.000 0.00 0.00 0.00 3.95
322 323 2.704065 TGAGTTCTTCCGAGTTCCCTTT 59.296 45.455 0.00 0.00 0.00 3.11
323 324 3.067833 GAGTTCTTCCGAGTTCCCTTTG 58.932 50.000 0.00 0.00 0.00 2.77
324 325 2.438392 AGTTCTTCCGAGTTCCCTTTGT 59.562 45.455 0.00 0.00 0.00 2.83
325 326 3.118000 AGTTCTTCCGAGTTCCCTTTGTT 60.118 43.478 0.00 0.00 0.00 2.83
326 327 2.846193 TCTTCCGAGTTCCCTTTGTTG 58.154 47.619 0.00 0.00 0.00 3.33
327 328 2.436542 TCTTCCGAGTTCCCTTTGTTGA 59.563 45.455 0.00 0.00 0.00 3.18
328 329 3.118186 TCTTCCGAGTTCCCTTTGTTGAA 60.118 43.478 0.00 0.00 0.00 2.69
329 330 3.502123 TCCGAGTTCCCTTTGTTGAAT 57.498 42.857 0.00 0.00 0.00 2.57
330 331 3.827722 TCCGAGTTCCCTTTGTTGAATT 58.172 40.909 0.00 0.00 0.00 2.17
331 332 3.818773 TCCGAGTTCCCTTTGTTGAATTC 59.181 43.478 0.00 0.00 0.00 2.17
332 333 3.364964 CCGAGTTCCCTTTGTTGAATTCG 60.365 47.826 9.32 9.32 44.95 3.34
333 334 3.496884 CGAGTTCCCTTTGTTGAATTCGA 59.503 43.478 10.39 0.00 46.91 3.71
334 335 4.024387 CGAGTTCCCTTTGTTGAATTCGAA 60.024 41.667 0.00 0.00 46.91 3.71
335 336 5.183014 AGTTCCCTTTGTTGAATTCGAAC 57.817 39.130 0.00 5.52 0.00 3.95
336 337 4.642885 AGTTCCCTTTGTTGAATTCGAACA 59.357 37.500 15.17 15.17 32.68 3.18
337 338 5.126384 AGTTCCCTTTGTTGAATTCGAACAA 59.874 36.000 21.75 21.75 40.65 2.83
338 339 5.584253 TCCCTTTGTTGAATTCGAACAAA 57.416 34.783 27.81 27.81 46.16 2.83
339 340 6.155475 TCCCTTTGTTGAATTCGAACAAAT 57.845 33.333 28.76 0.00 46.74 2.32
340 341 6.578023 TCCCTTTGTTGAATTCGAACAAATT 58.422 32.000 28.76 0.00 46.74 1.82
341 342 7.044798 TCCCTTTGTTGAATTCGAACAAATTT 58.955 30.769 28.76 0.00 46.74 1.82
342 343 7.550906 TCCCTTTGTTGAATTCGAACAAATTTT 59.449 29.630 28.76 0.00 46.74 1.82
343 344 8.821894 CCCTTTGTTGAATTCGAACAAATTTTA 58.178 29.630 28.76 17.63 46.74 1.52
346 347 9.974750 TTTGTTGAATTCGAACAAATTTTAACC 57.025 25.926 26.97 5.13 44.46 2.85
347 348 8.934507 TGTTGAATTCGAACAAATTTTAACCT 57.065 26.923 16.20 0.00 31.72 3.50
348 349 9.026074 TGTTGAATTCGAACAAATTTTAACCTC 57.974 29.630 16.20 0.00 31.72 3.85
349 350 8.484799 GTTGAATTCGAACAAATTTTAACCTCC 58.515 33.333 0.00 0.00 0.00 4.30
350 351 6.858993 TGAATTCGAACAAATTTTAACCTCCG 59.141 34.615 0.00 0.00 0.00 4.63
351 352 4.752661 TCGAACAAATTTTAACCTCCGG 57.247 40.909 0.00 0.00 0.00 5.14
352 353 4.387598 TCGAACAAATTTTAACCTCCGGA 58.612 39.130 2.93 2.93 0.00 5.14
353 354 5.005094 TCGAACAAATTTTAACCTCCGGAT 58.995 37.500 3.57 0.00 0.00 4.18
354 355 6.171921 TCGAACAAATTTTAACCTCCGGATA 58.828 36.000 3.57 0.00 0.00 2.59
355 356 6.824704 TCGAACAAATTTTAACCTCCGGATAT 59.175 34.615 3.57 0.00 0.00 1.63
356 357 6.910433 CGAACAAATTTTAACCTCCGGATATG 59.090 38.462 3.57 0.00 0.00 1.78
357 358 6.709018 ACAAATTTTAACCTCCGGATATGG 57.291 37.500 3.57 5.46 0.00 2.74
358 359 6.192044 ACAAATTTTAACCTCCGGATATGGT 58.808 36.000 3.57 6.27 35.29 3.55
359 360 6.320418 ACAAATTTTAACCTCCGGATATGGTC 59.680 38.462 13.85 0.00 32.98 4.02
360 361 3.738830 TTTAACCTCCGGATATGGTCG 57.261 47.619 13.85 0.00 32.98 4.79
361 362 2.662535 TAACCTCCGGATATGGTCGA 57.337 50.000 13.85 3.50 32.98 4.20
362 363 1.784358 AACCTCCGGATATGGTCGAA 58.216 50.000 13.85 0.00 32.98 3.71
363 364 2.011122 ACCTCCGGATATGGTCGAAT 57.989 50.000 3.57 0.00 0.00 3.34
364 365 2.326428 ACCTCCGGATATGGTCGAATT 58.674 47.619 3.57 0.00 0.00 2.17
365 366 2.704065 ACCTCCGGATATGGTCGAATTT 59.296 45.455 3.57 0.00 0.00 1.82
366 367 3.067106 CCTCCGGATATGGTCGAATTTG 58.933 50.000 3.57 0.00 0.00 2.32
367 368 3.494398 CCTCCGGATATGGTCGAATTTGT 60.494 47.826 3.57 0.00 0.00 2.83
368 369 3.462982 TCCGGATATGGTCGAATTTGTG 58.537 45.455 0.00 0.00 0.00 3.33
369 370 2.032030 CCGGATATGGTCGAATTTGTGC 60.032 50.000 0.00 0.00 0.00 4.57
370 371 2.611751 CGGATATGGTCGAATTTGTGCA 59.388 45.455 0.00 0.00 0.00 4.57
371 372 3.250762 CGGATATGGTCGAATTTGTGCAT 59.749 43.478 0.00 0.00 0.00 3.96
372 373 4.261155 CGGATATGGTCGAATTTGTGCATT 60.261 41.667 0.00 0.00 0.00 3.56
373 374 5.591099 GGATATGGTCGAATTTGTGCATTT 58.409 37.500 0.00 0.00 0.00 2.32
374 375 6.042143 GGATATGGTCGAATTTGTGCATTTT 58.958 36.000 0.00 0.00 0.00 1.82
375 376 7.199766 GGATATGGTCGAATTTGTGCATTTTA 58.800 34.615 0.00 0.00 0.00 1.52
376 377 7.704472 GGATATGGTCGAATTTGTGCATTTTAA 59.296 33.333 0.00 0.00 0.00 1.52
377 378 6.949578 ATGGTCGAATTTGTGCATTTTAAG 57.050 33.333 0.00 0.00 0.00 1.85
378 379 5.226396 TGGTCGAATTTGTGCATTTTAAGG 58.774 37.500 0.00 0.00 0.00 2.69
379 380 4.091365 GGTCGAATTTGTGCATTTTAAGGC 59.909 41.667 0.00 0.00 36.03 4.35
380 381 4.923281 GTCGAATTTGTGCATTTTAAGGCT 59.077 37.500 0.00 0.00 36.52 4.58
381 382 4.922692 TCGAATTTGTGCATTTTAAGGCTG 59.077 37.500 0.00 0.00 36.52 4.85
382 383 4.685628 CGAATTTGTGCATTTTAAGGCTGT 59.314 37.500 0.00 0.00 36.52 4.40
383 384 5.177327 CGAATTTGTGCATTTTAAGGCTGTT 59.823 36.000 0.00 0.00 36.52 3.16
384 385 6.364706 CGAATTTGTGCATTTTAAGGCTGTTA 59.635 34.615 0.00 0.00 36.52 2.41
385 386 7.063308 CGAATTTGTGCATTTTAAGGCTGTTAT 59.937 33.333 0.00 0.00 36.52 1.89
386 387 8.620116 AATTTGTGCATTTTAAGGCTGTTATT 57.380 26.923 0.00 0.00 36.52 1.40
387 388 8.620116 ATTTGTGCATTTTAAGGCTGTTATTT 57.380 26.923 0.00 0.00 36.52 1.40
388 389 8.443953 TTTGTGCATTTTAAGGCTGTTATTTT 57.556 26.923 0.00 0.00 36.52 1.82
389 390 7.418840 TGTGCATTTTAAGGCTGTTATTTTG 57.581 32.000 0.00 0.00 36.52 2.44
390 391 7.212976 TGTGCATTTTAAGGCTGTTATTTTGA 58.787 30.769 0.00 0.00 36.52 2.69
391 392 7.712639 TGTGCATTTTAAGGCTGTTATTTTGAA 59.287 29.630 0.00 0.00 36.52 2.69
392 393 8.009409 GTGCATTTTAAGGCTGTTATTTTGAAC 58.991 33.333 0.00 0.00 36.52 3.18
393 394 7.172361 TGCATTTTAAGGCTGTTATTTTGAACC 59.828 33.333 0.67 0.00 36.52 3.62
394 395 7.387673 GCATTTTAAGGCTGTTATTTTGAACCT 59.612 33.333 0.00 0.00 32.08 3.50
395 396 8.711457 CATTTTAAGGCTGTTATTTTGAACCTG 58.289 33.333 0.00 0.00 0.00 4.00
396 397 4.871933 AAGGCTGTTATTTTGAACCTGG 57.128 40.909 0.00 0.00 0.00 4.45
397 398 3.844640 AGGCTGTTATTTTGAACCTGGT 58.155 40.909 0.00 0.00 0.00 4.00
398 399 3.573967 AGGCTGTTATTTTGAACCTGGTG 59.426 43.478 0.00 0.00 0.00 4.17
399 400 3.317150 GCTGTTATTTTGAACCTGGTGC 58.683 45.455 0.00 0.00 0.00 5.01
400 401 3.005791 GCTGTTATTTTGAACCTGGTGCT 59.994 43.478 6.34 0.00 0.00 4.40
401 402 4.217550 GCTGTTATTTTGAACCTGGTGCTA 59.782 41.667 6.34 0.00 0.00 3.49
402 403 5.278758 GCTGTTATTTTGAACCTGGTGCTAA 60.279 40.000 6.34 1.48 0.00 3.09
403 404 6.572314 GCTGTTATTTTGAACCTGGTGCTAAT 60.572 38.462 6.34 8.39 0.00 1.73
404 405 7.296628 TGTTATTTTGAACCTGGTGCTAATT 57.703 32.000 6.34 4.19 0.00 1.40
405 406 8.410673 TGTTATTTTGAACCTGGTGCTAATTA 57.589 30.769 6.34 3.24 0.00 1.40
406 407 8.861086 TGTTATTTTGAACCTGGTGCTAATTAA 58.139 29.630 6.34 8.89 0.00 1.40
407 408 9.353999 GTTATTTTGAACCTGGTGCTAATTAAG 57.646 33.333 6.34 0.00 0.00 1.85
420 421 4.857509 CTAATTAAGCTCGGTCTAGCCT 57.142 45.455 0.00 0.00 43.86 4.58
421 422 3.737032 AATTAAGCTCGGTCTAGCCTC 57.263 47.619 0.00 0.00 43.86 4.70
422 423 1.400737 TTAAGCTCGGTCTAGCCTCC 58.599 55.000 0.00 0.00 43.86 4.30
423 424 0.551879 TAAGCTCGGTCTAGCCTCCT 59.448 55.000 0.00 0.00 43.86 3.69
424 425 1.040339 AAGCTCGGTCTAGCCTCCTG 61.040 60.000 0.00 0.00 43.86 3.86
425 426 1.755008 GCTCGGTCTAGCCTCCTGT 60.755 63.158 2.39 0.00 36.45 4.00
426 427 0.465824 GCTCGGTCTAGCCTCCTGTA 60.466 60.000 2.39 0.00 36.45 2.74
427 428 2.022754 GCTCGGTCTAGCCTCCTGTAA 61.023 57.143 2.39 0.00 36.45 2.41
428 429 1.677052 CTCGGTCTAGCCTCCTGTAAC 59.323 57.143 2.39 0.00 34.25 2.50
429 430 1.005097 TCGGTCTAGCCTCCTGTAACA 59.995 52.381 2.39 0.00 34.25 2.41
430 431 2.032620 CGGTCTAGCCTCCTGTAACAT 58.967 52.381 2.39 0.00 34.25 2.71
431 432 2.223829 CGGTCTAGCCTCCTGTAACATG 60.224 54.545 0.00 0.00 34.25 3.21
432 433 2.103263 GGTCTAGCCTCCTGTAACATGG 59.897 54.545 0.00 0.00 0.00 3.66
433 434 1.762957 TCTAGCCTCCTGTAACATGGC 59.237 52.381 0.00 0.00 43.52 4.40
434 435 0.837272 TAGCCTCCTGTAACATGGCC 59.163 55.000 0.00 0.00 44.19 5.36
435 436 0.916358 AGCCTCCTGTAACATGGCCT 60.916 55.000 3.32 0.00 44.19 5.19
436 437 0.749454 GCCTCCTGTAACATGGCCTG 60.749 60.000 3.32 2.01 37.81 4.85
437 438 0.911769 CCTCCTGTAACATGGCCTGA 59.088 55.000 3.32 0.00 0.00 3.86
438 439 1.134280 CCTCCTGTAACATGGCCTGAG 60.134 57.143 3.32 0.00 0.00 3.35
439 440 1.833630 CTCCTGTAACATGGCCTGAGA 59.166 52.381 3.32 0.00 0.00 3.27
440 441 2.437281 CTCCTGTAACATGGCCTGAGAT 59.563 50.000 3.32 0.00 0.00 2.75
441 442 2.846206 TCCTGTAACATGGCCTGAGATT 59.154 45.455 3.32 0.00 0.00 2.40
442 443 2.947652 CCTGTAACATGGCCTGAGATTG 59.052 50.000 3.32 0.00 0.00 2.67
443 444 2.947652 CTGTAACATGGCCTGAGATTGG 59.052 50.000 3.32 0.00 0.00 3.16
457 458 4.843728 TGAGATTGGAGTATTGTTGGTCC 58.156 43.478 0.00 0.00 0.00 4.46
460 461 2.871096 TGGAGTATTGTTGGTCCACC 57.129 50.000 0.00 0.00 34.03 4.61
468 469 1.004918 GTTGGTCCACCCGACTGAG 60.005 63.158 0.00 0.00 43.52 3.35
469 470 1.458777 TTGGTCCACCCGACTGAGT 60.459 57.895 0.00 0.00 41.64 3.41
473 474 2.357517 CCACCCGACTGAGTGCAC 60.358 66.667 9.40 9.40 32.48 4.57
478 479 1.669115 CCGACTGAGTGCACCTTGG 60.669 63.158 14.63 3.44 0.00 3.61
484 485 1.344438 CTGAGTGCACCTTGGACACTA 59.656 52.381 14.63 7.66 44.40 2.74
489 490 1.275291 TGCACCTTGGACACTAGCTAC 59.725 52.381 0.00 0.00 0.00 3.58
490 491 1.405661 GCACCTTGGACACTAGCTACC 60.406 57.143 0.00 0.00 0.00 3.18
491 492 1.899814 CACCTTGGACACTAGCTACCA 59.100 52.381 0.00 0.00 0.00 3.25
492 493 2.501723 CACCTTGGACACTAGCTACCAT 59.498 50.000 1.91 0.00 32.31 3.55
519 520 7.657761 CCATGGTCTCAAGTCAATTATAGTACC 59.342 40.741 2.57 0.00 0.00 3.34
647 650 0.877649 CCTCACATGCGATTCCTCGG 60.878 60.000 0.00 0.00 45.15 4.63
682 694 9.581099 GTGTTCTTAATTTCTTGTTTCTTTGGA 57.419 29.630 0.00 0.00 0.00 3.53
695 707 7.259290 TGTTTCTTTGGATACTTGTTGAGAC 57.741 36.000 0.00 0.00 37.61 3.36
697 709 7.556275 TGTTTCTTTGGATACTTGTTGAGACTT 59.444 33.333 0.00 0.00 37.61 3.01
700 712 6.931281 TCTTTGGATACTTGTTGAGACTTGAG 59.069 38.462 0.00 0.00 37.61 3.02
701 713 6.419484 TTGGATACTTGTTGAGACTTGAGA 57.581 37.500 0.00 0.00 37.61 3.27
702 714 6.030548 TGGATACTTGTTGAGACTTGAGAG 57.969 41.667 0.00 0.00 37.61 3.20
703 715 5.540337 TGGATACTTGTTGAGACTTGAGAGT 59.460 40.000 0.00 0.00 36.57 3.24
704 716 5.866633 GGATACTTGTTGAGACTTGAGAGTG 59.133 44.000 0.00 0.00 35.88 3.51
705 717 4.065321 ACTTGTTGAGACTTGAGAGTGG 57.935 45.455 0.00 0.00 35.88 4.00
706 718 3.706594 ACTTGTTGAGACTTGAGAGTGGA 59.293 43.478 0.00 0.00 35.88 4.02
708 720 3.031013 TGTTGAGACTTGAGAGTGGACA 58.969 45.455 0.00 0.00 35.88 4.02
709 721 3.068732 TGTTGAGACTTGAGAGTGGACAG 59.931 47.826 0.00 0.00 35.88 3.51
710 722 1.615883 TGAGACTTGAGAGTGGACAGC 59.384 52.381 0.00 0.00 35.88 4.40
711 723 1.615883 GAGACTTGAGAGTGGACAGCA 59.384 52.381 0.00 0.00 35.88 4.41
770 792 6.748333 ACATGGAAATGGATAGCATATTCG 57.252 37.500 0.00 0.00 0.00 3.34
778 800 5.227569 TGGATAGCATATTCGTCCAACAT 57.772 39.130 1.29 0.00 36.12 2.71
783 830 7.063544 GGATAGCATATTCGTCCAACATTCTAC 59.936 40.741 0.00 0.00 0.00 2.59
790 837 6.822667 TTCGTCCAACATTCTACTACTACA 57.177 37.500 0.00 0.00 0.00 2.74
939 999 1.740025 GCTGCGCTCTTACCTTGATTT 59.260 47.619 9.73 0.00 0.00 2.17
940 1000 2.162408 GCTGCGCTCTTACCTTGATTTT 59.838 45.455 9.73 0.00 0.00 1.82
1247 1316 1.651240 CTCATTGCCTTCTGGGTGCG 61.651 60.000 0.00 0.00 37.43 5.34
1580 2367 1.812507 GGTACAACGATGGCGACCC 60.813 63.158 0.00 0.00 41.64 4.46
1656 2443 3.049227 CGTGATCGCAGTGGATGAA 57.951 52.632 7.12 0.00 0.00 2.57
1704 2491 7.630242 TTCTCAGGACATCAAAATAATCCAC 57.370 36.000 0.00 0.00 31.41 4.02
1836 2623 1.447663 CATCCGTGTCATCGCACCA 60.448 57.895 0.00 0.00 36.08 4.17
2280 3070 2.166459 GTGGACCATCGATGTCTCTGAA 59.834 50.000 23.27 5.93 0.00 3.02
2447 3452 2.429971 TCCATGAGAGTGTCATCAGCTC 59.570 50.000 0.00 0.00 44.73 4.09
2448 3453 2.167900 CCATGAGAGTGTCATCAGCTCA 59.832 50.000 0.00 0.00 44.73 4.26
2449 3454 3.181464 CCATGAGAGTGTCATCAGCTCAT 60.181 47.826 0.00 0.00 44.73 2.90
2450 3455 4.443621 CATGAGAGTGTCATCAGCTCATT 58.556 43.478 0.00 0.00 44.73 2.57
2451 3456 4.548451 TGAGAGTGTCATCAGCTCATTT 57.452 40.909 0.00 0.00 33.92 2.32
2452 3457 4.502016 TGAGAGTGTCATCAGCTCATTTC 58.498 43.478 0.00 0.00 33.92 2.17
2453 3458 4.020839 TGAGAGTGTCATCAGCTCATTTCA 60.021 41.667 0.00 0.00 33.92 2.69
2454 3459 5.100344 AGAGTGTCATCAGCTCATTTCAT 57.900 39.130 0.00 0.00 0.00 2.57
2455 3460 5.117584 AGAGTGTCATCAGCTCATTTCATC 58.882 41.667 0.00 0.00 0.00 2.92
2456 3461 5.100344 AGTGTCATCAGCTCATTTCATCT 57.900 39.130 0.00 0.00 0.00 2.90
2457 3462 5.498393 AGTGTCATCAGCTCATTTCATCTT 58.502 37.500 0.00 0.00 0.00 2.40
2458 3463 5.585445 AGTGTCATCAGCTCATTTCATCTTC 59.415 40.000 0.00 0.00 0.00 2.87
2459 3464 4.569564 TGTCATCAGCTCATTTCATCTTCG 59.430 41.667 0.00 0.00 0.00 3.79
2460 3465 4.025061 GTCATCAGCTCATTTCATCTTCGG 60.025 45.833 0.00 0.00 0.00 4.30
2461 3466 3.616956 TCAGCTCATTTCATCTTCGGT 57.383 42.857 0.00 0.00 0.00 4.69
2462 3467 3.264947 TCAGCTCATTTCATCTTCGGTG 58.735 45.455 0.00 0.00 0.00 4.94
2463 3468 2.012673 AGCTCATTTCATCTTCGGTGC 58.987 47.619 0.00 0.00 0.00 5.01
2464 3469 1.064654 GCTCATTTCATCTTCGGTGCC 59.935 52.381 0.00 0.00 0.00 5.01
2465 3470 2.358957 CTCATTTCATCTTCGGTGCCA 58.641 47.619 0.00 0.00 0.00 4.92
2466 3471 2.947652 CTCATTTCATCTTCGGTGCCAT 59.052 45.455 0.00 0.00 0.00 4.40
2467 3472 3.355378 TCATTTCATCTTCGGTGCCATT 58.645 40.909 0.00 0.00 0.00 3.16
2468 3473 3.129113 TCATTTCATCTTCGGTGCCATTG 59.871 43.478 0.00 0.00 0.00 2.82
2469 3474 0.810648 TTCATCTTCGGTGCCATTGC 59.189 50.000 0.00 0.00 38.26 3.56
2479 3484 3.600187 TGCCATTGCAGGACATCAT 57.400 47.368 0.00 0.00 44.23 2.45
2480 3485 1.855295 TGCCATTGCAGGACATCATT 58.145 45.000 0.00 0.00 44.23 2.57
2481 3486 2.181125 TGCCATTGCAGGACATCATTT 58.819 42.857 0.00 0.00 44.23 2.32
2482 3487 2.093921 TGCCATTGCAGGACATCATTTG 60.094 45.455 0.00 0.00 44.23 2.32
2483 3488 2.166870 GCCATTGCAGGACATCATTTGA 59.833 45.455 0.00 0.00 37.47 2.69
2484 3489 3.737047 GCCATTGCAGGACATCATTTGAG 60.737 47.826 0.00 0.00 37.47 3.02
2485 3490 3.446161 CCATTGCAGGACATCATTTGAGT 59.554 43.478 0.00 0.00 0.00 3.41
2486 3491 4.081862 CCATTGCAGGACATCATTTGAGTT 60.082 41.667 0.00 0.00 0.00 3.01
2487 3492 4.771590 TTGCAGGACATCATTTGAGTTC 57.228 40.909 0.00 0.00 0.00 3.01
2488 3493 3.084039 TGCAGGACATCATTTGAGTTCC 58.916 45.455 3.15 3.15 32.03 3.62
2489 3494 3.245016 TGCAGGACATCATTTGAGTTCCT 60.245 43.478 6.85 6.85 38.89 3.36
2490 3495 4.019411 TGCAGGACATCATTTGAGTTCCTA 60.019 41.667 10.81 0.00 37.23 2.94
2491 3496 4.574013 GCAGGACATCATTTGAGTTCCTAG 59.426 45.833 10.81 8.02 37.23 3.02
2492 3497 4.574013 CAGGACATCATTTGAGTTCCTAGC 59.426 45.833 10.81 0.00 37.23 3.42
2493 3498 3.879892 GGACATCATTTGAGTTCCTAGCC 59.120 47.826 3.90 0.00 0.00 3.93
2494 3499 3.535561 ACATCATTTGAGTTCCTAGCCG 58.464 45.455 0.00 0.00 0.00 5.52
2495 3500 3.055094 ACATCATTTGAGTTCCTAGCCGT 60.055 43.478 0.00 0.00 0.00 5.68
2496 3501 2.972625 TCATTTGAGTTCCTAGCCGTG 58.027 47.619 0.00 0.00 0.00 4.94
2497 3502 2.565391 TCATTTGAGTTCCTAGCCGTGA 59.435 45.455 0.00 0.00 0.00 4.35
2498 3503 3.007506 TCATTTGAGTTCCTAGCCGTGAA 59.992 43.478 0.00 0.00 0.00 3.18
2499 3504 2.450609 TTGAGTTCCTAGCCGTGAAC 57.549 50.000 2.40 2.40 40.88 3.18
2500 3505 0.242825 TGAGTTCCTAGCCGTGAACG 59.757 55.000 0.00 0.00 44.30 3.95
2501 3506 0.524862 GAGTTCCTAGCCGTGAACGA 59.475 55.000 4.03 0.00 44.30 3.85
2502 3507 0.963962 AGTTCCTAGCCGTGAACGAA 59.036 50.000 4.03 0.00 44.30 3.85
2503 3508 1.066136 GTTCCTAGCCGTGAACGAAC 58.934 55.000 4.03 0.00 43.02 3.95
2504 3509 0.963962 TTCCTAGCCGTGAACGAACT 59.036 50.000 4.03 4.17 43.02 3.01
2505 3510 0.242825 TCCTAGCCGTGAACGAACTG 59.757 55.000 4.03 0.00 43.02 3.16
2506 3511 0.242825 CCTAGCCGTGAACGAACTGA 59.757 55.000 4.03 0.00 43.02 3.41
2507 3512 1.336517 CCTAGCCGTGAACGAACTGAA 60.337 52.381 4.03 0.00 43.02 3.02
2508 3513 2.607187 CTAGCCGTGAACGAACTGAAT 58.393 47.619 4.03 0.00 43.02 2.57
2509 3514 1.148310 AGCCGTGAACGAACTGAATG 58.852 50.000 4.03 0.00 43.02 2.67
2510 3515 0.452784 GCCGTGAACGAACTGAATGC 60.453 55.000 4.03 0.00 43.02 3.56
2511 3516 0.179250 CCGTGAACGAACTGAATGCG 60.179 55.000 4.03 0.00 43.02 4.73
2512 3517 0.506932 CGTGAACGAACTGAATGCGT 59.493 50.000 0.00 0.00 43.02 5.24
2513 3518 1.460267 CGTGAACGAACTGAATGCGTC 60.460 52.381 0.00 0.00 43.02 5.19
2514 3519 1.136336 GTGAACGAACTGAATGCGTCC 60.136 52.381 0.00 0.00 37.26 4.79
2515 3520 0.093026 GAACGAACTGAATGCGTCCG 59.907 55.000 0.00 0.00 37.26 4.79
2516 3521 1.289109 AACGAACTGAATGCGTCCGG 61.289 55.000 0.00 0.00 37.26 5.14
2517 3522 1.736645 CGAACTGAATGCGTCCGGT 60.737 57.895 0.00 0.00 0.00 5.28
2518 3523 1.289109 CGAACTGAATGCGTCCGGTT 61.289 55.000 0.00 0.00 0.00 4.44
2519 3524 0.872388 GAACTGAATGCGTCCGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
2520 3525 1.265905 GAACTGAATGCGTCCGGTTTT 59.734 47.619 0.00 0.00 0.00 2.43
2521 3526 0.591170 ACTGAATGCGTCCGGTTTTG 59.409 50.000 0.00 0.00 0.00 2.44
2522 3527 0.729140 CTGAATGCGTCCGGTTTTGC 60.729 55.000 0.00 1.88 0.00 3.68
2523 3528 1.795962 GAATGCGTCCGGTTTTGCG 60.796 57.895 0.00 0.98 0.00 4.85
2524 3529 2.452366 GAATGCGTCCGGTTTTGCGT 62.452 55.000 0.00 0.00 0.00 5.24
2525 3530 2.725275 AATGCGTCCGGTTTTGCGTG 62.725 55.000 0.00 0.00 0.00 5.34
2526 3531 3.641986 GCGTCCGGTTTTGCGTGA 61.642 61.111 0.00 0.00 0.00 4.35
2527 3532 2.961669 GCGTCCGGTTTTGCGTGAT 61.962 57.895 0.00 0.00 0.00 3.06
2528 3533 1.131826 CGTCCGGTTTTGCGTGATC 59.868 57.895 0.00 0.00 0.00 2.92
2529 3534 1.131826 GTCCGGTTTTGCGTGATCG 59.868 57.895 0.00 0.00 40.37 3.69
2530 3535 2.030401 TCCGGTTTTGCGTGATCGG 61.030 57.895 0.00 0.00 38.92 4.18
2531 3536 2.322081 CCGGTTTTGCGTGATCGGT 61.322 57.895 0.00 0.00 37.56 4.69
2532 3537 1.154488 CGGTTTTGCGTGATCGGTG 60.154 57.895 0.00 0.00 37.56 4.94
2533 3538 1.837538 CGGTTTTGCGTGATCGGTGT 61.838 55.000 0.00 0.00 37.56 4.16
2534 3539 0.110373 GGTTTTGCGTGATCGGTGTC 60.110 55.000 0.00 0.00 37.56 3.67
2535 3540 0.450482 GTTTTGCGTGATCGGTGTCG 60.450 55.000 0.00 0.00 37.56 4.35
2536 3541 0.876777 TTTTGCGTGATCGGTGTCGT 60.877 50.000 0.00 0.00 37.69 4.34
2537 3542 1.553195 TTTGCGTGATCGGTGTCGTG 61.553 55.000 0.00 0.00 37.69 4.35
2538 3543 2.126618 GCGTGATCGGTGTCGTGA 60.127 61.111 0.00 0.00 37.69 4.35
2539 3544 1.516386 GCGTGATCGGTGTCGTGAT 60.516 57.895 0.00 0.00 37.69 3.06
2540 3545 0.248336 GCGTGATCGGTGTCGTGATA 60.248 55.000 0.00 0.00 37.69 2.15
2541 3546 1.599667 GCGTGATCGGTGTCGTGATAT 60.600 52.381 0.00 0.00 37.69 1.63
2542 3547 2.044135 CGTGATCGGTGTCGTGATATG 58.956 52.381 0.00 0.00 37.69 1.78
2543 3548 2.540973 CGTGATCGGTGTCGTGATATGT 60.541 50.000 0.00 0.00 37.69 2.29
2544 3549 3.444916 GTGATCGGTGTCGTGATATGTT 58.555 45.455 0.00 0.00 37.69 2.71
2545 3550 3.863424 GTGATCGGTGTCGTGATATGTTT 59.137 43.478 0.00 0.00 37.69 2.83
2546 3551 3.862845 TGATCGGTGTCGTGATATGTTTG 59.137 43.478 0.00 0.00 37.69 2.93
2547 3552 2.612604 TCGGTGTCGTGATATGTTTGG 58.387 47.619 0.00 0.00 37.69 3.28
2548 3553 2.028839 TCGGTGTCGTGATATGTTTGGT 60.029 45.455 0.00 0.00 37.69 3.67
2549 3554 2.347452 CGGTGTCGTGATATGTTTGGTC 59.653 50.000 0.00 0.00 0.00 4.02
2550 3555 3.331150 GGTGTCGTGATATGTTTGGTCA 58.669 45.455 0.00 0.00 0.00 4.02
2551 3556 3.749088 GGTGTCGTGATATGTTTGGTCAA 59.251 43.478 0.00 0.00 0.00 3.18
2552 3557 4.142902 GGTGTCGTGATATGTTTGGTCAAG 60.143 45.833 0.00 0.00 0.00 3.02
2553 3558 4.451096 GTGTCGTGATATGTTTGGTCAAGT 59.549 41.667 0.00 0.00 0.00 3.16
2554 3559 4.688879 TGTCGTGATATGTTTGGTCAAGTC 59.311 41.667 0.00 0.00 0.00 3.01
2555 3560 4.092968 GTCGTGATATGTTTGGTCAAGTCC 59.907 45.833 0.00 0.00 0.00 3.85
2556 3561 4.020573 TCGTGATATGTTTGGTCAAGTCCT 60.021 41.667 0.00 0.00 0.00 3.85
2557 3562 5.186215 TCGTGATATGTTTGGTCAAGTCCTA 59.814 40.000 0.00 0.00 0.00 2.94
2558 3563 6.049149 CGTGATATGTTTGGTCAAGTCCTAT 58.951 40.000 0.00 0.00 0.00 2.57
2559 3564 7.068962 TCGTGATATGTTTGGTCAAGTCCTATA 59.931 37.037 0.00 0.00 0.00 1.31
2560 3565 7.709182 CGTGATATGTTTGGTCAAGTCCTATAA 59.291 37.037 0.00 0.00 0.00 0.98
2561 3566 8.827677 GTGATATGTTTGGTCAAGTCCTATAAC 58.172 37.037 0.00 0.00 0.00 1.89
2562 3567 7.709182 TGATATGTTTGGTCAAGTCCTATAACG 59.291 37.037 0.00 0.00 0.00 3.18
2563 3568 5.471556 TGTTTGGTCAAGTCCTATAACGA 57.528 39.130 0.00 0.00 0.00 3.85
2564 3569 5.475719 TGTTTGGTCAAGTCCTATAACGAG 58.524 41.667 0.00 0.00 0.00 4.18
2565 3570 3.795623 TGGTCAAGTCCTATAACGAGC 57.204 47.619 0.00 0.00 0.00 5.03
2566 3571 2.098607 TGGTCAAGTCCTATAACGAGCG 59.901 50.000 0.00 0.00 0.00 5.03
2567 3572 2.357009 GGTCAAGTCCTATAACGAGCGA 59.643 50.000 0.00 0.00 0.00 4.93
2568 3573 3.181493 GGTCAAGTCCTATAACGAGCGAA 60.181 47.826 0.00 0.00 0.00 4.70
2569 3574 4.418392 GTCAAGTCCTATAACGAGCGAAA 58.582 43.478 0.00 0.00 0.00 3.46
2570 3575 4.264849 GTCAAGTCCTATAACGAGCGAAAC 59.735 45.833 0.00 0.00 0.00 2.78
2571 3576 3.062323 AGTCCTATAACGAGCGAAACG 57.938 47.619 0.00 0.00 0.00 3.60
3237 4261 5.977725 TCTTTCTTCAGTTCAGTTCAGTACG 59.022 40.000 0.00 0.00 0.00 3.67
3293 4321 8.533569 TGATGAATATGTCAGAGTACAAGGTA 57.466 34.615 0.00 0.00 40.43 3.08
3431 4461 2.485814 CAGGTCTGGAAGTTTTAGCTGC 59.514 50.000 0.00 0.00 33.76 5.25
3459 4489 6.183360 GCTGTCCAGTATTTGCATATCAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
3484 4514 9.720667 TTTGCGATTTATTTCATATCAGTTCTG 57.279 29.630 0.00 0.00 0.00 3.02
3509 4539 0.961857 TACGTAGCAGGTTCTGGCGA 60.962 55.000 0.00 0.00 34.54 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.176364 AGGATGGGGATGACCAGATTTG 59.824 50.000 0.00 0.00 45.20 2.32
5 6 2.444766 GAGGATGGGGATGACCAGATTT 59.555 50.000 0.00 0.00 45.20 2.17
6 7 2.061061 GAGGATGGGGATGACCAGATT 58.939 52.381 0.00 0.00 45.20 2.40
7 8 1.739750 GAGGATGGGGATGACCAGAT 58.260 55.000 0.00 0.00 45.20 2.90
8 9 0.760567 CGAGGATGGGGATGACCAGA 60.761 60.000 0.00 0.00 45.20 3.86
9 10 1.050988 ACGAGGATGGGGATGACCAG 61.051 60.000 0.00 0.00 45.20 4.00
10 11 0.620410 AACGAGGATGGGGATGACCA 60.620 55.000 0.00 0.00 46.24 4.02
11 12 0.106894 GAACGAGGATGGGGATGACC 59.893 60.000 0.00 0.00 39.11 4.02
12 13 1.123928 AGAACGAGGATGGGGATGAC 58.876 55.000 0.00 0.00 0.00 3.06
13 14 1.123077 CAGAACGAGGATGGGGATGA 58.877 55.000 0.00 0.00 0.00 2.92
14 15 0.533755 GCAGAACGAGGATGGGGATG 60.534 60.000 0.00 0.00 0.00 3.51
15 16 0.692419 AGCAGAACGAGGATGGGGAT 60.692 55.000 0.00 0.00 0.00 3.85
16 17 1.306141 AGCAGAACGAGGATGGGGA 60.306 57.895 0.00 0.00 0.00 4.81
17 18 1.144936 GAGCAGAACGAGGATGGGG 59.855 63.158 0.00 0.00 0.00 4.96
18 19 0.179089 CTGAGCAGAACGAGGATGGG 60.179 60.000 0.00 0.00 0.00 4.00
19 20 0.809241 GCTGAGCAGAACGAGGATGG 60.809 60.000 0.00 0.00 0.00 3.51
20 21 0.809241 GGCTGAGCAGAACGAGGATG 60.809 60.000 6.82 0.00 0.00 3.51
21 22 1.260538 TGGCTGAGCAGAACGAGGAT 61.261 55.000 6.82 0.00 0.00 3.24
22 23 1.260538 ATGGCTGAGCAGAACGAGGA 61.261 55.000 6.82 0.00 0.00 3.71
23 24 1.088340 CATGGCTGAGCAGAACGAGG 61.088 60.000 6.82 0.00 0.00 4.63
24 25 1.088340 CCATGGCTGAGCAGAACGAG 61.088 60.000 6.82 0.00 0.00 4.18
25 26 1.078918 CCATGGCTGAGCAGAACGA 60.079 57.895 6.82 0.00 0.00 3.85
26 27 2.758089 GCCATGGCTGAGCAGAACG 61.758 63.158 29.98 0.00 38.26 3.95
27 28 2.413142 GGCCATGGCTGAGCAGAAC 61.413 63.158 34.70 12.27 41.60 3.01
28 29 2.044650 GGCCATGGCTGAGCAGAA 60.045 61.111 34.70 0.00 41.60 3.02
36 37 3.474570 GTCTCCTCGGCCATGGCT 61.475 66.667 34.70 0.00 41.60 4.75
37 38 4.554036 GGTCTCCTCGGCCATGGC 62.554 72.222 29.47 29.47 41.06 4.40
38 39 4.227134 CGGTCTCCTCGGCCATGG 62.227 72.222 7.63 7.63 0.00 3.66
39 40 4.899239 GCGGTCTCCTCGGCCATG 62.899 72.222 2.24 0.00 0.00 3.66
62 63 3.073735 ACAGGAGGCTCAGCGGAG 61.074 66.667 17.69 9.76 44.33 4.63
63 64 3.071206 GACAGGAGGCTCAGCGGA 61.071 66.667 17.69 0.00 0.00 5.54
64 65 4.154347 GGACAGGAGGCTCAGCGG 62.154 72.222 17.69 3.07 0.00 5.52
65 66 4.504916 CGGACAGGAGGCTCAGCG 62.505 72.222 17.69 6.18 0.00 5.18
66 67 4.828925 GCGGACAGGAGGCTCAGC 62.829 72.222 17.69 7.60 0.00 4.26
67 68 4.154347 GGCGGACAGGAGGCTCAG 62.154 72.222 17.69 10.68 0.00 3.35
68 69 4.704103 AGGCGGACAGGAGGCTCA 62.704 66.667 17.69 0.00 39.09 4.26
93 94 4.830765 TACATGGCGCCGCTGGTC 62.831 66.667 26.72 2.37 0.00 4.02
94 95 4.175337 ATACATGGCGCCGCTGGT 62.175 61.111 26.72 20.96 0.00 4.00
95 96 3.349006 GATACATGGCGCCGCTGG 61.349 66.667 26.72 16.88 0.00 4.85
96 97 1.835483 GAAGATACATGGCGCCGCTG 61.835 60.000 23.90 23.41 0.00 5.18
97 98 1.595382 GAAGATACATGGCGCCGCT 60.595 57.895 23.90 9.04 0.00 5.52
98 99 2.607892 GGAAGATACATGGCGCCGC 61.608 63.158 23.90 0.00 0.00 6.53
99 100 1.961277 GGGAAGATACATGGCGCCG 60.961 63.158 23.90 11.34 0.00 6.46
100 101 1.600916 GGGGAAGATACATGGCGCC 60.601 63.158 22.73 22.73 0.00 6.53
101 102 1.961277 CGGGGAAGATACATGGCGC 60.961 63.158 0.00 0.00 0.00 6.53
102 103 0.179056 AACGGGGAAGATACATGGCG 60.179 55.000 0.00 0.00 0.00 5.69
103 104 1.308998 CAACGGGGAAGATACATGGC 58.691 55.000 0.00 0.00 0.00 4.40
104 105 1.308998 GCAACGGGGAAGATACATGG 58.691 55.000 0.00 0.00 0.00 3.66
105 106 1.308998 GGCAACGGGGAAGATACATG 58.691 55.000 0.00 0.00 0.00 3.21
106 107 0.182775 GGGCAACGGGGAAGATACAT 59.817 55.000 0.00 0.00 37.60 2.29
107 108 0.912487 AGGGCAACGGGGAAGATACA 60.912 55.000 0.00 0.00 37.60 2.29
108 109 0.255033 AAGGGCAACGGGGAAGATAC 59.745 55.000 0.00 0.00 37.60 2.24
109 110 0.544697 GAAGGGCAACGGGGAAGATA 59.455 55.000 0.00 0.00 37.60 1.98
110 111 1.208165 AGAAGGGCAACGGGGAAGAT 61.208 55.000 0.00 0.00 37.60 2.40
111 112 1.846124 AGAAGGGCAACGGGGAAGA 60.846 57.895 0.00 0.00 37.60 2.87
112 113 1.675641 CAGAAGGGCAACGGGGAAG 60.676 63.158 0.00 0.00 37.60 3.46
113 114 2.434331 CAGAAGGGCAACGGGGAA 59.566 61.111 0.00 0.00 37.60 3.97
114 115 4.344865 GCAGAAGGGCAACGGGGA 62.345 66.667 0.00 0.00 37.60 4.81
115 116 4.351054 AGCAGAAGGGCAACGGGG 62.351 66.667 0.00 0.00 35.83 5.73
116 117 2.747855 GAGCAGAAGGGCAACGGG 60.748 66.667 0.00 0.00 35.83 5.28
117 118 3.121030 CGAGCAGAAGGGCAACGG 61.121 66.667 0.00 0.00 35.83 4.44
118 119 2.357517 ACGAGCAGAAGGGCAACG 60.358 61.111 0.00 0.00 39.99 4.10
119 120 2.970974 GCACGAGCAGAAGGGCAAC 61.971 63.158 0.00 0.00 41.58 4.17
120 121 2.669569 GCACGAGCAGAAGGGCAA 60.670 61.111 0.00 0.00 41.58 4.52
123 124 3.997064 CTCCGCACGAGCAGAAGGG 62.997 68.421 5.50 0.00 42.27 3.95
124 125 2.507992 CTCCGCACGAGCAGAAGG 60.508 66.667 5.50 0.00 42.27 3.46
131 132 2.578178 CGAGAAGCTCCGCACGAG 60.578 66.667 0.00 0.00 42.04 4.18
132 133 3.324099 GACGAGAAGCTCCGCACGA 62.324 63.158 7.72 0.00 0.00 4.35
133 134 2.876645 GACGAGAAGCTCCGCACG 60.877 66.667 0.00 0.00 0.00 5.34
134 135 2.876645 CGACGAGAAGCTCCGCAC 60.877 66.667 0.00 0.00 0.00 5.34
135 136 4.778415 GCGACGAGAAGCTCCGCA 62.778 66.667 0.00 0.00 39.58 5.69
152 153 2.105128 GAGGACGACTGCCATCGG 59.895 66.667 10.97 0.00 46.56 4.18
154 155 1.153549 GTGGAGGACGACTGCCATC 60.154 63.158 0.00 0.00 36.59 3.51
155 156 2.982130 GTGGAGGACGACTGCCAT 59.018 61.111 0.00 0.00 36.59 4.40
173 174 4.951963 CCTAGCTAGGCGCCGTGC 62.952 72.222 30.17 30.17 45.38 5.34
181 182 2.846652 CGTGGTCGGCCTAGCTAGG 61.847 68.421 32.12 32.12 46.42 3.02
182 183 1.787057 CTCGTGGTCGGCCTAGCTAG 61.787 65.000 14.20 14.20 37.69 3.42
183 184 1.822613 CTCGTGGTCGGCCTAGCTA 60.823 63.158 7.97 0.00 37.69 3.32
184 185 3.141488 CTCGTGGTCGGCCTAGCT 61.141 66.667 7.97 0.00 37.69 3.32
185 186 4.874977 GCTCGTGGTCGGCCTAGC 62.875 72.222 7.97 10.35 37.69 3.42
186 187 3.449227 TGCTCGTGGTCGGCCTAG 61.449 66.667 7.97 3.18 37.69 3.02
187 188 3.755628 GTGCTCGTGGTCGGCCTA 61.756 66.667 7.97 0.00 37.69 3.93
190 191 4.961511 TGTGTGCTCGTGGTCGGC 62.962 66.667 0.00 0.00 37.69 5.54
191 192 2.734723 CTGTGTGCTCGTGGTCGG 60.735 66.667 0.00 0.00 37.69 4.79
192 193 1.548973 GAACTGTGTGCTCGTGGTCG 61.549 60.000 0.00 0.00 38.55 4.79
193 194 0.529773 TGAACTGTGTGCTCGTGGTC 60.530 55.000 0.00 0.00 0.00 4.02
194 195 0.107897 TTGAACTGTGTGCTCGTGGT 60.108 50.000 0.00 0.00 0.00 4.16
195 196 0.583438 CTTGAACTGTGTGCTCGTGG 59.417 55.000 0.00 0.00 0.00 4.94
196 197 0.041839 GCTTGAACTGTGTGCTCGTG 60.042 55.000 0.00 0.00 0.00 4.35
197 198 1.490693 CGCTTGAACTGTGTGCTCGT 61.491 55.000 0.00 0.00 0.00 4.18
198 199 1.202568 CGCTTGAACTGTGTGCTCG 59.797 57.895 0.00 0.00 0.00 5.03
199 200 1.082496 GCGCTTGAACTGTGTGCTC 60.082 57.895 0.00 0.00 34.76 4.26
200 201 2.546494 GGCGCTTGAACTGTGTGCT 61.546 57.895 7.64 0.00 37.37 4.40
201 202 2.050985 GGCGCTTGAACTGTGTGC 60.051 61.111 7.64 0.00 36.59 4.57
202 203 1.571460 GAGGCGCTTGAACTGTGTG 59.429 57.895 7.64 0.00 0.00 3.82
203 204 1.956170 CGAGGCGCTTGAACTGTGT 60.956 57.895 7.64 0.00 0.00 3.72
204 205 2.671177 CCGAGGCGCTTGAACTGTG 61.671 63.158 7.64 0.00 0.00 3.66
205 206 2.357517 CCGAGGCGCTTGAACTGT 60.358 61.111 7.64 0.00 0.00 3.55
206 207 2.048222 TCCGAGGCGCTTGAACTG 60.048 61.111 7.64 0.00 0.00 3.16
207 208 1.608717 ATCTCCGAGGCGCTTGAACT 61.609 55.000 7.64 0.00 0.00 3.01
208 209 1.148759 GATCTCCGAGGCGCTTGAAC 61.149 60.000 7.64 0.00 0.00 3.18
209 210 1.141881 GATCTCCGAGGCGCTTGAA 59.858 57.895 7.64 0.00 0.00 2.69
210 211 2.808315 GATCTCCGAGGCGCTTGA 59.192 61.111 7.64 0.00 0.00 3.02
211 212 2.656651 CGATCTCCGAGGCGCTTG 60.657 66.667 7.64 0.00 41.76 4.01
212 213 4.577246 GCGATCTCCGAGGCGCTT 62.577 66.667 21.51 0.00 45.41 4.68
221 222 4.632458 GAGTCCGCGGCGATCTCC 62.632 72.222 25.92 11.02 0.00 3.71
222 223 4.632458 GGAGTCCGCGGCGATCTC 62.632 72.222 25.92 25.99 0.00 2.75
268 269 2.439156 GGCATGGTGGAGCTGTCC 60.439 66.667 0.00 0.00 44.24 4.02
269 270 2.439156 GGGCATGGTGGAGCTGTC 60.439 66.667 0.00 0.00 0.00 3.51
270 271 4.415150 CGGGCATGGTGGAGCTGT 62.415 66.667 0.00 0.00 0.00 4.40
284 285 4.227134 ACATAGCAGAGCGGCGGG 62.227 66.667 9.78 0.00 39.27 6.13
285 286 2.963854 CACATAGCAGAGCGGCGG 60.964 66.667 9.78 0.00 39.27 6.13
286 287 1.948138 CTCACATAGCAGAGCGGCG 60.948 63.158 0.51 0.51 39.27 6.46
287 288 0.460987 AACTCACATAGCAGAGCGGC 60.461 55.000 0.00 0.00 35.28 6.53
288 289 1.135915 AGAACTCACATAGCAGAGCGG 59.864 52.381 0.00 0.00 35.28 5.52
289 290 2.575694 AGAACTCACATAGCAGAGCG 57.424 50.000 0.00 0.00 35.28 5.03
290 291 3.194062 GGAAGAACTCACATAGCAGAGC 58.806 50.000 0.00 0.00 35.28 4.09
291 292 3.129462 TCGGAAGAACTCACATAGCAGAG 59.871 47.826 0.00 0.00 37.03 3.35
292 293 3.089284 TCGGAAGAACTCACATAGCAGA 58.911 45.455 0.00 0.00 37.03 4.26
293 294 3.119316 ACTCGGAAGAACTCACATAGCAG 60.119 47.826 0.00 0.00 41.32 4.24
294 295 2.826128 ACTCGGAAGAACTCACATAGCA 59.174 45.455 0.00 0.00 41.32 3.49
295 296 3.512033 ACTCGGAAGAACTCACATAGC 57.488 47.619 0.00 0.00 41.32 2.97
296 297 4.425520 GGAACTCGGAAGAACTCACATAG 58.574 47.826 0.00 0.00 41.32 2.23
297 298 3.194968 GGGAACTCGGAAGAACTCACATA 59.805 47.826 0.00 0.00 41.32 2.29
298 299 2.028020 GGGAACTCGGAAGAACTCACAT 60.028 50.000 0.00 0.00 41.32 3.21
299 300 1.343465 GGGAACTCGGAAGAACTCACA 59.657 52.381 0.00 0.00 41.32 3.58
300 301 1.619332 AGGGAACTCGGAAGAACTCAC 59.381 52.381 0.00 0.00 41.32 3.51
301 302 2.011122 AGGGAACTCGGAAGAACTCA 57.989 50.000 0.00 0.00 41.32 3.41
302 303 3.067833 CAAAGGGAACTCGGAAGAACTC 58.932 50.000 0.00 0.00 42.68 3.01
303 304 2.438392 ACAAAGGGAACTCGGAAGAACT 59.562 45.455 0.00 0.00 42.68 3.01
304 305 2.847441 ACAAAGGGAACTCGGAAGAAC 58.153 47.619 0.00 0.00 42.68 3.01
305 306 3.118186 TCAACAAAGGGAACTCGGAAGAA 60.118 43.478 0.00 0.00 42.68 2.52
306 307 2.436542 TCAACAAAGGGAACTCGGAAGA 59.563 45.455 0.00 0.00 42.68 2.87
307 308 2.846193 TCAACAAAGGGAACTCGGAAG 58.154 47.619 0.00 0.00 42.68 3.46
308 309 3.284793 TTCAACAAAGGGAACTCGGAA 57.715 42.857 0.00 0.00 42.68 4.30
309 310 3.502123 ATTCAACAAAGGGAACTCGGA 57.498 42.857 0.00 0.00 42.68 4.55
310 311 3.364964 CGAATTCAACAAAGGGAACTCGG 60.365 47.826 6.22 0.00 42.68 4.63
311 312 3.496884 TCGAATTCAACAAAGGGAACTCG 59.503 43.478 6.22 0.00 42.20 4.18
312 313 5.212934 GTTCGAATTCAACAAAGGGAACTC 58.787 41.667 0.00 0.00 42.68 3.01
313 314 5.126384 TTGTTCGAATTCAACAAAGGGAACT 59.874 36.000 22.63 0.00 40.08 3.01
314 315 4.927422 TGTTCGAATTCAACAAAGGGAAC 58.073 39.130 16.20 13.16 30.67 3.62
315 316 5.584253 TTGTTCGAATTCAACAAAGGGAA 57.416 34.783 22.63 8.24 40.08 3.97
316 317 5.584253 TTTGTTCGAATTCAACAAAGGGA 57.416 34.783 26.97 15.97 44.82 4.20
321 322 9.372369 AGGTTAAAATTTGTTCGAATTCAACAA 57.628 25.926 21.75 21.75 41.05 2.83
322 323 8.934507 AGGTTAAAATTTGTTCGAATTCAACA 57.065 26.923 15.17 15.17 31.80 3.33
323 324 8.484799 GGAGGTTAAAATTTGTTCGAATTCAAC 58.515 33.333 0.00 9.51 0.00 3.18
324 325 7.380065 CGGAGGTTAAAATTTGTTCGAATTCAA 59.620 33.333 0.00 0.00 0.00 2.69
325 326 6.858993 CGGAGGTTAAAATTTGTTCGAATTCA 59.141 34.615 0.00 0.00 0.00 2.57
326 327 7.260722 CGGAGGTTAAAATTTGTTCGAATTC 57.739 36.000 0.00 0.00 0.00 2.17
346 347 3.494626 CACAAATTCGACCATATCCGGAG 59.505 47.826 11.34 0.00 0.00 4.63
347 348 3.462982 CACAAATTCGACCATATCCGGA 58.537 45.455 6.61 6.61 0.00 5.14
348 349 2.032030 GCACAAATTCGACCATATCCGG 60.032 50.000 0.00 0.00 0.00 5.14
349 350 2.611751 TGCACAAATTCGACCATATCCG 59.388 45.455 0.00 0.00 0.00 4.18
350 351 4.836125 ATGCACAAATTCGACCATATCC 57.164 40.909 0.00 0.00 0.00 2.59
351 352 8.627487 TTAAAATGCACAAATTCGACCATATC 57.373 30.769 0.00 0.00 0.00 1.63
352 353 7.706179 CCTTAAAATGCACAAATTCGACCATAT 59.294 33.333 0.00 0.00 0.00 1.78
353 354 7.032580 CCTTAAAATGCACAAATTCGACCATA 58.967 34.615 0.00 0.00 0.00 2.74
354 355 5.868801 CCTTAAAATGCACAAATTCGACCAT 59.131 36.000 0.00 0.00 0.00 3.55
355 356 5.226396 CCTTAAAATGCACAAATTCGACCA 58.774 37.500 0.00 0.00 0.00 4.02
356 357 4.091365 GCCTTAAAATGCACAAATTCGACC 59.909 41.667 0.00 0.00 0.00 4.79
357 358 4.923281 AGCCTTAAAATGCACAAATTCGAC 59.077 37.500 0.00 0.00 0.00 4.20
358 359 4.922692 CAGCCTTAAAATGCACAAATTCGA 59.077 37.500 0.00 0.00 0.00 3.71
359 360 4.685628 ACAGCCTTAAAATGCACAAATTCG 59.314 37.500 0.00 0.00 0.00 3.34
360 361 6.544038 AACAGCCTTAAAATGCACAAATTC 57.456 33.333 0.00 0.00 0.00 2.17
361 362 8.620116 AATAACAGCCTTAAAATGCACAAATT 57.380 26.923 0.00 0.00 0.00 1.82
362 363 8.620116 AAATAACAGCCTTAAAATGCACAAAT 57.380 26.923 0.00 0.00 0.00 2.32
363 364 8.341173 CAAAATAACAGCCTTAAAATGCACAAA 58.659 29.630 0.00 0.00 0.00 2.83
364 365 7.712639 TCAAAATAACAGCCTTAAAATGCACAA 59.287 29.630 0.00 0.00 0.00 3.33
365 366 7.212976 TCAAAATAACAGCCTTAAAATGCACA 58.787 30.769 0.00 0.00 0.00 4.57
366 367 7.650834 TCAAAATAACAGCCTTAAAATGCAC 57.349 32.000 0.00 0.00 0.00 4.57
367 368 7.172361 GGTTCAAAATAACAGCCTTAAAATGCA 59.828 33.333 0.00 0.00 0.00 3.96
368 369 7.387673 AGGTTCAAAATAACAGCCTTAAAATGC 59.612 33.333 0.00 0.00 0.00 3.56
369 370 8.711457 CAGGTTCAAAATAACAGCCTTAAAATG 58.289 33.333 0.00 0.00 0.00 2.32
370 371 7.877612 CCAGGTTCAAAATAACAGCCTTAAAAT 59.122 33.333 0.00 0.00 0.00 1.82
371 372 7.147637 ACCAGGTTCAAAATAACAGCCTTAAAA 60.148 33.333 0.00 0.00 0.00 1.52
372 373 6.325286 ACCAGGTTCAAAATAACAGCCTTAAA 59.675 34.615 0.00 0.00 0.00 1.52
373 374 5.836358 ACCAGGTTCAAAATAACAGCCTTAA 59.164 36.000 0.00 0.00 0.00 1.85
374 375 5.242838 CACCAGGTTCAAAATAACAGCCTTA 59.757 40.000 0.00 0.00 0.00 2.69
375 376 4.039124 CACCAGGTTCAAAATAACAGCCTT 59.961 41.667 0.00 0.00 0.00 4.35
376 377 3.573967 CACCAGGTTCAAAATAACAGCCT 59.426 43.478 0.00 0.00 0.00 4.58
377 378 3.860754 GCACCAGGTTCAAAATAACAGCC 60.861 47.826 0.00 0.00 0.00 4.85
378 379 3.005791 AGCACCAGGTTCAAAATAACAGC 59.994 43.478 0.00 0.00 0.00 4.40
379 380 4.853924 AGCACCAGGTTCAAAATAACAG 57.146 40.909 0.00 0.00 0.00 3.16
380 381 6.909550 ATTAGCACCAGGTTCAAAATAACA 57.090 33.333 0.00 0.00 0.00 2.41
381 382 9.353999 CTTAATTAGCACCAGGTTCAAAATAAC 57.646 33.333 0.00 0.00 0.00 1.89
399 400 4.321378 GGAGGCTAGACCGAGCTTAATTAG 60.321 50.000 0.00 0.00 46.52 1.73
400 401 3.573110 GGAGGCTAGACCGAGCTTAATTA 59.427 47.826 0.00 0.00 46.52 1.40
401 402 2.365941 GGAGGCTAGACCGAGCTTAATT 59.634 50.000 0.00 0.00 46.52 1.40
402 403 1.964933 GGAGGCTAGACCGAGCTTAAT 59.035 52.381 0.00 0.00 46.52 1.40
403 404 1.063867 AGGAGGCTAGACCGAGCTTAA 60.064 52.381 0.00 0.00 46.52 1.85
404 405 0.551879 AGGAGGCTAGACCGAGCTTA 59.448 55.000 0.00 0.00 46.52 3.09
405 406 1.040339 CAGGAGGCTAGACCGAGCTT 61.040 60.000 0.00 0.00 46.52 3.74
406 407 1.454847 CAGGAGGCTAGACCGAGCT 60.455 63.158 0.00 0.00 46.52 4.09
407 408 0.465824 TACAGGAGGCTAGACCGAGC 60.466 60.000 0.00 0.00 46.52 5.03
408 409 1.677052 GTTACAGGAGGCTAGACCGAG 59.323 57.143 0.00 0.00 46.52 4.63
409 410 1.005097 TGTTACAGGAGGCTAGACCGA 59.995 52.381 0.00 0.00 46.52 4.69
410 411 1.471119 TGTTACAGGAGGCTAGACCG 58.529 55.000 0.00 0.00 46.52 4.79
411 412 2.103263 CCATGTTACAGGAGGCTAGACC 59.897 54.545 0.00 0.00 39.61 3.85
412 413 2.483889 GCCATGTTACAGGAGGCTAGAC 60.484 54.545 15.72 0.00 42.01 2.59
413 414 1.762957 GCCATGTTACAGGAGGCTAGA 59.237 52.381 15.72 0.00 42.01 2.43
414 415 1.202698 GGCCATGTTACAGGAGGCTAG 60.203 57.143 20.10 0.00 44.60 3.42
415 416 0.837272 GGCCATGTTACAGGAGGCTA 59.163 55.000 20.10 0.00 44.60 3.93
416 417 0.916358 AGGCCATGTTACAGGAGGCT 60.916 55.000 20.10 14.47 44.60 4.58
417 418 0.749454 CAGGCCATGTTACAGGAGGC 60.749 60.000 5.01 14.98 44.48 4.70
418 419 0.911769 TCAGGCCATGTTACAGGAGG 59.088 55.000 5.01 0.00 0.00 4.30
419 420 1.833630 TCTCAGGCCATGTTACAGGAG 59.166 52.381 5.01 0.00 0.00 3.69
420 421 1.951209 TCTCAGGCCATGTTACAGGA 58.049 50.000 5.01 0.00 0.00 3.86
421 422 2.947652 CAATCTCAGGCCATGTTACAGG 59.052 50.000 5.01 0.00 0.00 4.00
422 423 2.947652 CCAATCTCAGGCCATGTTACAG 59.052 50.000 5.01 0.00 0.00 2.74
423 424 2.575735 TCCAATCTCAGGCCATGTTACA 59.424 45.455 5.01 0.00 0.00 2.41
424 425 3.209410 CTCCAATCTCAGGCCATGTTAC 58.791 50.000 5.01 0.00 0.00 2.50
425 426 2.846206 ACTCCAATCTCAGGCCATGTTA 59.154 45.455 5.01 0.00 0.00 2.41
426 427 1.637553 ACTCCAATCTCAGGCCATGTT 59.362 47.619 5.01 0.00 0.00 2.71
427 428 1.293062 ACTCCAATCTCAGGCCATGT 58.707 50.000 5.01 0.00 0.00 3.21
428 429 3.784511 ATACTCCAATCTCAGGCCATG 57.215 47.619 5.01 0.00 0.00 3.66
429 430 3.461085 ACAATACTCCAATCTCAGGCCAT 59.539 43.478 5.01 0.00 0.00 4.40
430 431 2.846206 ACAATACTCCAATCTCAGGCCA 59.154 45.455 5.01 0.00 0.00 5.36
431 432 3.567478 ACAATACTCCAATCTCAGGCC 57.433 47.619 0.00 0.00 0.00 5.19
432 433 3.629398 CCAACAATACTCCAATCTCAGGC 59.371 47.826 0.00 0.00 0.00 4.85
433 434 4.848357 ACCAACAATACTCCAATCTCAGG 58.152 43.478 0.00 0.00 0.00 3.86
434 435 4.878397 GGACCAACAATACTCCAATCTCAG 59.122 45.833 0.00 0.00 0.00 3.35
435 436 4.288366 TGGACCAACAATACTCCAATCTCA 59.712 41.667 0.00 0.00 29.50 3.27
436 437 4.636206 GTGGACCAACAATACTCCAATCTC 59.364 45.833 0.00 0.00 34.53 2.75
437 438 4.567747 GGTGGACCAACAATACTCCAATCT 60.568 45.833 4.08 0.00 34.53 2.40
438 439 3.694566 GGTGGACCAACAATACTCCAATC 59.305 47.826 4.08 0.00 34.53 2.67
439 440 3.563479 GGGTGGACCAACAATACTCCAAT 60.563 47.826 12.67 0.00 39.85 3.16
440 441 2.224917 GGGTGGACCAACAATACTCCAA 60.225 50.000 12.67 0.00 39.85 3.53
441 442 1.353022 GGGTGGACCAACAATACTCCA 59.647 52.381 12.67 0.00 39.85 3.86
442 443 1.677820 CGGGTGGACCAACAATACTCC 60.678 57.143 12.67 0.00 40.22 3.85
443 444 1.276989 TCGGGTGGACCAACAATACTC 59.723 52.381 12.67 0.00 40.22 2.59
457 458 2.357517 GGTGCACTCAGTCGGGTG 60.358 66.667 17.98 0.00 36.62 4.61
460 461 1.669115 CCAAGGTGCACTCAGTCGG 60.669 63.158 17.98 5.41 0.00 4.79
468 469 0.035458 AGCTAGTGTCCAAGGTGCAC 59.965 55.000 8.80 8.80 0.00 4.57
469 470 1.275291 GTAGCTAGTGTCCAAGGTGCA 59.725 52.381 0.00 0.00 0.00 4.57
473 474 2.103263 GGATGGTAGCTAGTGTCCAAGG 59.897 54.545 5.02 0.00 33.55 3.61
478 479 3.393089 CCATGGATGGTAGCTAGTGTC 57.607 52.381 5.56 0.00 43.05 3.67
490 491 7.935755 ACTATAATTGACTTGAGACCATGGATG 59.064 37.037 21.47 0.20 0.00 3.51
491 492 8.038862 ACTATAATTGACTTGAGACCATGGAT 57.961 34.615 21.47 6.30 0.00 3.41
492 493 7.437713 ACTATAATTGACTTGAGACCATGGA 57.562 36.000 21.47 0.00 0.00 3.41
673 684 7.773224 TCAAGTCTCAACAAGTATCCAAAGAAA 59.227 33.333 0.00 0.00 0.00 2.52
682 694 5.540337 TCCACTCTCAAGTCTCAACAAGTAT 59.460 40.000 0.00 0.00 31.71 2.12
695 707 1.155042 GCTTGCTGTCCACTCTCAAG 58.845 55.000 0.00 0.00 37.70 3.02
697 709 1.547820 CTAGCTTGCTGTCCACTCTCA 59.452 52.381 5.26 0.00 0.00 3.27
700 712 2.072298 CAACTAGCTTGCTGTCCACTC 58.928 52.381 5.26 0.00 0.00 3.51
701 713 1.271054 CCAACTAGCTTGCTGTCCACT 60.271 52.381 5.26 0.00 0.00 4.00
702 714 1.160137 CCAACTAGCTTGCTGTCCAC 58.840 55.000 5.26 0.00 0.00 4.02
703 715 0.606401 GCCAACTAGCTTGCTGTCCA 60.606 55.000 5.26 0.00 0.00 4.02
704 716 0.606401 TGCCAACTAGCTTGCTGTCC 60.606 55.000 5.26 0.00 0.00 4.02
705 717 1.399791 GATGCCAACTAGCTTGCTGTC 59.600 52.381 5.26 0.00 0.00 3.51
706 718 1.457346 GATGCCAACTAGCTTGCTGT 58.543 50.000 5.26 0.00 0.00 4.40
708 720 0.394899 GGGATGCCAACTAGCTTGCT 60.395 55.000 0.00 0.00 0.00 3.91
709 721 0.394899 AGGGATGCCAACTAGCTTGC 60.395 55.000 5.86 0.00 0.00 4.01
710 722 1.747355 CAAGGGATGCCAACTAGCTTG 59.253 52.381 5.86 0.00 0.00 4.01
711 723 1.355720 ACAAGGGATGCCAACTAGCTT 59.644 47.619 5.86 0.00 0.00 3.74
770 792 7.600065 TGAGTTGTAGTAGTAGAATGTTGGAC 58.400 38.462 0.00 0.00 0.00 4.02
778 800 8.865420 AGATCAACTGAGTTGTAGTAGTAGAA 57.135 34.615 23.17 2.11 43.23 2.10
1247 1316 0.606673 GAGGTGCAACAGGAGGAACC 60.607 60.000 3.64 0.00 39.98 3.62
1656 2443 3.257873 CCACCTCATTCTCGCTATCTGAT 59.742 47.826 0.00 0.00 0.00 2.90
1802 2589 2.668279 CGGATGCAGTAGCCAAACAAAC 60.668 50.000 0.00 0.00 41.13 2.93
1836 2623 0.610232 GAGAGGTGGCAATGGCAAGT 60.610 55.000 12.09 0.77 43.71 3.16
1919 2706 3.429372 AAGGCGCCACCCAACAAGA 62.429 57.895 31.54 0.00 40.58 3.02
2280 3070 2.684881 CTGTGCACACTTCTTGACCTTT 59.315 45.455 17.42 0.00 0.00 3.11
2447 3452 3.441163 CAATGGCACCGAAGATGAAATG 58.559 45.455 0.00 0.00 0.00 2.32
2448 3453 2.159198 GCAATGGCACCGAAGATGAAAT 60.159 45.455 0.00 0.00 40.72 2.17
2449 3454 1.202114 GCAATGGCACCGAAGATGAAA 59.798 47.619 0.00 0.00 40.72 2.69
2450 3455 0.810648 GCAATGGCACCGAAGATGAA 59.189 50.000 0.00 0.00 40.72 2.57
2451 3456 2.481212 GCAATGGCACCGAAGATGA 58.519 52.632 0.00 0.00 40.72 2.92
2462 3467 2.166870 TCAAATGATGTCCTGCAATGGC 59.833 45.455 0.00 0.00 41.68 4.40
2463 3468 3.446161 ACTCAAATGATGTCCTGCAATGG 59.554 43.478 0.00 0.00 0.00 3.16
2464 3469 4.713824 ACTCAAATGATGTCCTGCAATG 57.286 40.909 0.00 0.00 0.00 2.82
2465 3470 4.159135 GGAACTCAAATGATGTCCTGCAAT 59.841 41.667 0.00 0.00 0.00 3.56
2466 3471 3.507233 GGAACTCAAATGATGTCCTGCAA 59.493 43.478 0.00 0.00 0.00 4.08
2467 3472 3.084039 GGAACTCAAATGATGTCCTGCA 58.916 45.455 5.63 0.00 0.00 4.41
2468 3473 3.350833 AGGAACTCAAATGATGTCCTGC 58.649 45.455 12.03 0.00 36.46 4.85
2469 3474 4.574013 GCTAGGAACTCAAATGATGTCCTG 59.426 45.833 18.47 12.34 41.75 3.86
2470 3475 4.384647 GGCTAGGAACTCAAATGATGTCCT 60.385 45.833 15.45 15.45 41.75 3.85
2471 3476 3.879892 GGCTAGGAACTCAAATGATGTCC 59.120 47.826 0.00 4.96 41.75 4.02
2472 3477 3.557595 CGGCTAGGAACTCAAATGATGTC 59.442 47.826 0.00 0.00 41.75 3.06
2473 3478 3.055094 ACGGCTAGGAACTCAAATGATGT 60.055 43.478 0.00 0.00 41.75 3.06
2474 3479 3.310774 CACGGCTAGGAACTCAAATGATG 59.689 47.826 0.00 0.00 41.75 3.07
2475 3480 3.197766 TCACGGCTAGGAACTCAAATGAT 59.802 43.478 0.00 0.00 41.75 2.45
2476 3481 2.565391 TCACGGCTAGGAACTCAAATGA 59.435 45.455 0.00 0.00 41.75 2.57
2477 3482 2.972625 TCACGGCTAGGAACTCAAATG 58.027 47.619 0.00 0.00 41.75 2.32
2478 3483 3.335579 GTTCACGGCTAGGAACTCAAAT 58.664 45.455 0.00 0.00 41.75 2.32
2479 3484 2.762745 GTTCACGGCTAGGAACTCAAA 58.237 47.619 0.00 0.00 41.75 2.69
2480 3485 1.336517 CGTTCACGGCTAGGAACTCAA 60.337 52.381 11.23 0.00 40.88 3.02
2481 3486 0.242825 CGTTCACGGCTAGGAACTCA 59.757 55.000 11.23 0.00 40.88 3.41
2482 3487 0.524862 TCGTTCACGGCTAGGAACTC 59.475 55.000 0.00 0.00 40.88 3.01
2483 3488 0.963962 TTCGTTCACGGCTAGGAACT 59.036 50.000 0.00 0.00 40.88 3.01
2484 3489 1.066136 GTTCGTTCACGGCTAGGAAC 58.934 55.000 0.00 0.00 39.92 3.62
2485 3490 0.963962 AGTTCGTTCACGGCTAGGAA 59.036 50.000 0.00 0.00 40.29 3.36
2486 3491 0.242825 CAGTTCGTTCACGGCTAGGA 59.757 55.000 0.00 0.00 40.29 2.94
2487 3492 0.242825 TCAGTTCGTTCACGGCTAGG 59.757 55.000 0.00 0.00 40.29 3.02
2488 3493 2.060326 TTCAGTTCGTTCACGGCTAG 57.940 50.000 0.00 0.00 40.29 3.42
2489 3494 2.333926 CATTCAGTTCGTTCACGGCTA 58.666 47.619 0.00 0.00 40.29 3.93
2490 3495 1.148310 CATTCAGTTCGTTCACGGCT 58.852 50.000 0.00 0.00 40.29 5.52
2491 3496 0.452784 GCATTCAGTTCGTTCACGGC 60.453 55.000 0.00 0.00 40.29 5.68
2492 3497 0.179250 CGCATTCAGTTCGTTCACGG 60.179 55.000 0.00 0.00 40.29 4.94
2493 3498 0.506932 ACGCATTCAGTTCGTTCACG 59.493 50.000 0.00 0.00 41.45 4.35
2494 3499 1.136336 GGACGCATTCAGTTCGTTCAC 60.136 52.381 0.00 0.00 36.50 3.18
2495 3500 1.144969 GGACGCATTCAGTTCGTTCA 58.855 50.000 0.00 0.00 36.50 3.18
2496 3501 0.093026 CGGACGCATTCAGTTCGTTC 59.907 55.000 0.00 0.00 35.98 3.95
2497 3502 1.289109 CCGGACGCATTCAGTTCGTT 61.289 55.000 0.00 0.00 38.84 3.85
2498 3503 1.736645 CCGGACGCATTCAGTTCGT 60.737 57.895 0.00 0.00 38.84 3.85
2499 3504 1.289109 AACCGGACGCATTCAGTTCG 61.289 55.000 9.46 0.00 40.10 3.95
2500 3505 0.872388 AAACCGGACGCATTCAGTTC 59.128 50.000 9.46 0.00 0.00 3.01
2501 3506 1.001815 CAAAACCGGACGCATTCAGTT 60.002 47.619 9.46 0.00 0.00 3.16
2502 3507 0.591170 CAAAACCGGACGCATTCAGT 59.409 50.000 9.46 0.00 0.00 3.41
2503 3508 0.729140 GCAAAACCGGACGCATTCAG 60.729 55.000 9.46 0.00 0.00 3.02
2504 3509 1.284408 GCAAAACCGGACGCATTCA 59.716 52.632 9.46 0.00 0.00 2.57
2505 3510 1.795962 CGCAAAACCGGACGCATTC 60.796 57.895 9.46 0.00 0.00 2.67
2506 3511 2.254051 CGCAAAACCGGACGCATT 59.746 55.556 9.46 0.00 0.00 3.56
2507 3512 2.975799 ACGCAAAACCGGACGCAT 60.976 55.556 9.46 0.00 0.00 4.73
2508 3513 3.943034 CACGCAAAACCGGACGCA 61.943 61.111 9.46 0.00 0.00 5.24
2509 3514 2.827959 GATCACGCAAAACCGGACGC 62.828 60.000 9.46 3.48 0.00 5.19
2510 3515 1.131826 GATCACGCAAAACCGGACG 59.868 57.895 9.46 6.23 0.00 4.79
2511 3516 1.131826 CGATCACGCAAAACCGGAC 59.868 57.895 9.46 0.00 0.00 4.79
2512 3517 2.030401 CCGATCACGCAAAACCGGA 61.030 57.895 9.46 0.00 39.31 5.14
2513 3518 2.322081 ACCGATCACGCAAAACCGG 61.322 57.895 0.00 0.00 42.30 5.28
2514 3519 1.154488 CACCGATCACGCAAAACCG 60.154 57.895 0.00 0.00 38.29 4.44
2515 3520 0.110373 GACACCGATCACGCAAAACC 60.110 55.000 0.00 0.00 38.29 3.27
2516 3521 0.450482 CGACACCGATCACGCAAAAC 60.450 55.000 0.00 0.00 38.22 2.43
2517 3522 0.876777 ACGACACCGATCACGCAAAA 60.877 50.000 0.00 0.00 39.50 2.44
2518 3523 1.300311 ACGACACCGATCACGCAAA 60.300 52.632 0.00 0.00 39.50 3.68
2519 3524 2.019408 CACGACACCGATCACGCAA 61.019 57.895 0.00 0.00 39.50 4.85
2520 3525 2.207788 ATCACGACACCGATCACGCA 62.208 55.000 0.00 0.00 39.50 5.24
2521 3526 0.248336 TATCACGACACCGATCACGC 60.248 55.000 0.00 0.00 39.50 5.34
2522 3527 2.044135 CATATCACGACACCGATCACG 58.956 52.381 0.00 0.00 39.50 4.35
2523 3528 3.079960 ACATATCACGACACCGATCAC 57.920 47.619 0.00 0.00 39.50 3.06
2524 3529 3.793797 AACATATCACGACACCGATCA 57.206 42.857 0.00 0.00 39.50 2.92
2525 3530 3.245284 CCAAACATATCACGACACCGATC 59.755 47.826 0.00 0.00 39.50 3.69
2526 3531 3.194861 CCAAACATATCACGACACCGAT 58.805 45.455 0.00 0.00 39.50 4.18
2527 3532 2.028839 ACCAAACATATCACGACACCGA 60.029 45.455 0.00 0.00 39.50 4.69
2528 3533 2.343101 ACCAAACATATCACGACACCG 58.657 47.619 0.00 0.00 42.50 4.94
2529 3534 3.331150 TGACCAAACATATCACGACACC 58.669 45.455 0.00 0.00 0.00 4.16
2530 3535 4.451096 ACTTGACCAAACATATCACGACAC 59.549 41.667 0.00 0.00 0.00 3.67
2531 3536 4.637276 ACTTGACCAAACATATCACGACA 58.363 39.130 0.00 0.00 0.00 4.35
2532 3537 4.092968 GGACTTGACCAAACATATCACGAC 59.907 45.833 0.00 0.00 0.00 4.34
2533 3538 4.020573 AGGACTTGACCAAACATATCACGA 60.021 41.667 0.00 0.00 0.00 4.35
2534 3539 4.253685 AGGACTTGACCAAACATATCACG 58.746 43.478 0.00 0.00 0.00 4.35
2535 3540 8.827677 GTTATAGGACTTGACCAAACATATCAC 58.172 37.037 0.00 0.00 0.00 3.06
2536 3541 7.709182 CGTTATAGGACTTGACCAAACATATCA 59.291 37.037 0.00 0.00 0.00 2.15
2537 3542 7.924412 TCGTTATAGGACTTGACCAAACATATC 59.076 37.037 0.00 0.00 0.00 1.63
2538 3543 7.788026 TCGTTATAGGACTTGACCAAACATAT 58.212 34.615 0.00 0.00 0.00 1.78
2539 3544 7.172868 TCGTTATAGGACTTGACCAAACATA 57.827 36.000 0.00 0.00 0.00 2.29
2540 3545 6.045072 TCGTTATAGGACTTGACCAAACAT 57.955 37.500 0.00 0.00 0.00 2.71
2541 3546 5.471556 TCGTTATAGGACTTGACCAAACA 57.528 39.130 0.00 0.00 0.00 2.83
2542 3547 4.329256 GCTCGTTATAGGACTTGACCAAAC 59.671 45.833 0.00 0.00 0.00 2.93
2543 3548 4.501071 GCTCGTTATAGGACTTGACCAAA 58.499 43.478 0.00 0.00 0.00 3.28
2544 3549 3.428452 CGCTCGTTATAGGACTTGACCAA 60.428 47.826 0.00 0.00 0.00 3.67
2545 3550 2.098607 CGCTCGTTATAGGACTTGACCA 59.901 50.000 0.00 0.00 0.00 4.02
2546 3551 2.357009 TCGCTCGTTATAGGACTTGACC 59.643 50.000 0.00 0.00 0.00 4.02
2547 3552 3.687572 TCGCTCGTTATAGGACTTGAC 57.312 47.619 0.00 0.00 0.00 3.18
2548 3553 4.418392 GTTTCGCTCGTTATAGGACTTGA 58.582 43.478 0.00 0.00 0.00 3.02
2549 3554 3.239941 CGTTTCGCTCGTTATAGGACTTG 59.760 47.826 0.00 0.00 0.00 3.16
2550 3555 3.119708 ACGTTTCGCTCGTTATAGGACTT 60.120 43.478 0.00 0.00 38.38 3.01
2551 3556 2.421424 ACGTTTCGCTCGTTATAGGACT 59.579 45.455 0.00 0.00 38.38 3.85
2552 3557 2.529090 CACGTTTCGCTCGTTATAGGAC 59.471 50.000 0.00 0.00 39.55 3.85
2553 3558 2.478370 CCACGTTTCGCTCGTTATAGGA 60.478 50.000 0.00 0.00 39.55 2.94
2554 3559 1.850441 CCACGTTTCGCTCGTTATAGG 59.150 52.381 0.00 0.00 39.55 2.57
2555 3560 1.254570 GCCACGTTTCGCTCGTTATAG 59.745 52.381 0.00 0.00 39.55 1.31
2556 3561 1.270971 GCCACGTTTCGCTCGTTATA 58.729 50.000 0.00 0.00 39.55 0.98
2557 3562 0.668096 TGCCACGTTTCGCTCGTTAT 60.668 50.000 0.00 0.00 39.55 1.89
2558 3563 1.300003 TGCCACGTTTCGCTCGTTA 60.300 52.632 0.00 0.00 39.55 3.18
2559 3564 2.586635 TGCCACGTTTCGCTCGTT 60.587 55.556 0.00 0.00 39.55 3.85
2560 3565 3.335534 GTGCCACGTTTCGCTCGT 61.336 61.111 0.00 0.00 42.33 4.18
2561 3566 2.548587 GATGTGCCACGTTTCGCTCG 62.549 60.000 0.00 0.00 0.00 5.03
2562 3567 1.132640 GATGTGCCACGTTTCGCTC 59.867 57.895 0.00 0.00 0.00 5.03
2563 3568 2.667318 CGATGTGCCACGTTTCGCT 61.667 57.895 0.00 0.00 0.00 4.93
2564 3569 2.202171 CGATGTGCCACGTTTCGC 60.202 61.111 0.00 0.00 0.00 4.70
2565 3570 2.202171 GCGATGTGCCACGTTTCG 60.202 61.111 9.44 9.44 37.76 3.46
3237 4261 2.032178 ACAAACTGAGCGAGAACAAAGC 59.968 45.455 0.00 0.00 0.00 3.51
3293 4321 0.625316 TAGCCAGCATGTGAATGGGT 59.375 50.000 14.45 14.45 46.13 4.51
3350 4380 3.998099 TCATCATTGCAACGAAAACCA 57.002 38.095 0.00 0.00 0.00 3.67
3407 4437 2.226674 GCTAAAACTTCCAGACCTGCAC 59.773 50.000 0.00 0.00 0.00 4.57
3431 4461 0.676466 TGCAAATACTGGACAGCCCG 60.676 55.000 0.00 0.00 37.93 6.13
3459 4489 8.892723 ACAGAACTGATATGAAATAAATCGCAA 58.107 29.630 8.87 0.00 29.06 4.85
3484 4514 3.243336 CAGAACCTGCTACGTACTTCAC 58.757 50.000 0.00 0.00 0.00 3.18
3489 4519 0.801067 CGCCAGAACCTGCTACGTAC 60.801 60.000 0.00 0.00 0.00 3.67
3490 4520 0.961857 TCGCCAGAACCTGCTACGTA 60.962 55.000 0.00 0.00 0.00 3.57
3491 4521 1.812686 TTCGCCAGAACCTGCTACGT 61.813 55.000 0.00 0.00 0.00 3.57
3492 4522 1.078759 CTTCGCCAGAACCTGCTACG 61.079 60.000 0.00 0.00 32.15 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.