Multiple sequence alignment - TraesCS2A01G019500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G019500 chr2A 100.000 2576 0 0 1 2576 9090242 9087667 0.000000e+00 4758.0
1 TraesCS2A01G019500 chr2A 81.882 1148 159 26 998 2121 8413108 8414230 0.000000e+00 922.0
2 TraesCS2A01G019500 chr2A 79.903 1234 214 17 913 2121 8727216 8728440 0.000000e+00 874.0
3 TraesCS2A01G019500 chr2B 96.828 1986 46 4 149 2121 13059632 13057651 0.000000e+00 3302.0
4 TraesCS2A01G019500 chr2B 82.574 1142 177 11 998 2121 138993293 138992156 0.000000e+00 987.0
5 TraesCS2A01G019500 chr2B 81.634 1138 183 13 998 2120 11445440 11446566 0.000000e+00 920.0
6 TraesCS2A01G019500 chr2B 80.274 1242 211 16 903 2121 11454328 11453098 0.000000e+00 905.0
7 TraesCS2A01G019500 chr2B 79.230 1247 222 19 903 2121 12966325 12967562 0.000000e+00 833.0
8 TraesCS2A01G019500 chr2D 97.002 1701 40 4 430 2121 9753776 9752078 0.000000e+00 2848.0
9 TraesCS2A01G019500 chr2D 82.837 1142 171 10 998 2121 85929585 85928451 0.000000e+00 1000.0
10 TraesCS2A01G019500 chr2D 77.919 1653 273 48 519 2121 8479832 8478222 0.000000e+00 946.0
11 TraesCS2A01G019500 chr2D 80.594 1144 181 14 998 2121 9380444 9381566 0.000000e+00 845.0
12 TraesCS2A01G019500 chr2D 97.643 297 7 0 149 445 9755419 9755123 6.360000e-141 510.0
13 TraesCS2A01G019500 chr2D 80.488 123 15 7 601 716 9792399 9792279 4.570000e-13 86.1
14 TraesCS2A01G019500 chr4D 81.250 1136 182 12 998 2121 464204609 464205725 0.000000e+00 889.0
15 TraesCS2A01G019500 chr7D 81.057 1135 176 19 1000 2121 589391227 589390119 0.000000e+00 869.0
16 TraesCS2A01G019500 chr4A 91.921 458 28 6 2122 2576 18334860 18335311 1.300000e-177 632.0
17 TraesCS2A01G019500 chr5A 91.685 457 35 3 2122 2576 17690191 17690646 4.680000e-177 630.0
18 TraesCS2A01G019500 chr7A 91.503 459 35 3 2121 2576 46334474 46334017 1.680000e-176 628.0
19 TraesCS2A01G019500 chr7A 91.106 461 33 7 2119 2576 3229160 3229615 3.640000e-173 617.0
20 TraesCS2A01G019500 chr7A 91.126 462 32 6 2121 2576 724060554 724060096 3.640000e-173 617.0
21 TraesCS2A01G019500 chr3A 91.304 460 31 7 2123 2576 163911245 163911701 1.010000e-173 619.0
22 TraesCS2A01G019500 chr3A 91.068 459 34 6 2121 2576 43396433 43395979 4.710000e-172 614.0
23 TraesCS2A01G019500 chr3A 90.850 459 34 6 2121 2576 43973875 43973422 2.190000e-170 608.0
24 TraesCS2A01G019500 chr1A 91.068 459 34 5 2122 2576 450211901 450212356 4.710000e-172 614.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G019500 chr2A 9087667 9090242 2575 True 4758 4758 100.0000 1 2576 1 chr2A.!!$R1 2575
1 TraesCS2A01G019500 chr2A 8413108 8414230 1122 False 922 922 81.8820 998 2121 1 chr2A.!!$F1 1123
2 TraesCS2A01G019500 chr2A 8727216 8728440 1224 False 874 874 79.9030 913 2121 1 chr2A.!!$F2 1208
3 TraesCS2A01G019500 chr2B 13057651 13059632 1981 True 3302 3302 96.8280 149 2121 1 chr2B.!!$R2 1972
4 TraesCS2A01G019500 chr2B 138992156 138993293 1137 True 987 987 82.5740 998 2121 1 chr2B.!!$R3 1123
5 TraesCS2A01G019500 chr2B 11445440 11446566 1126 False 920 920 81.6340 998 2120 1 chr2B.!!$F1 1122
6 TraesCS2A01G019500 chr2B 11453098 11454328 1230 True 905 905 80.2740 903 2121 1 chr2B.!!$R1 1218
7 TraesCS2A01G019500 chr2B 12966325 12967562 1237 False 833 833 79.2300 903 2121 1 chr2B.!!$F2 1218
8 TraesCS2A01G019500 chr2D 9752078 9755419 3341 True 1679 2848 97.3225 149 2121 2 chr2D.!!$R4 1972
9 TraesCS2A01G019500 chr2D 85928451 85929585 1134 True 1000 1000 82.8370 998 2121 1 chr2D.!!$R3 1123
10 TraesCS2A01G019500 chr2D 8478222 8479832 1610 True 946 946 77.9190 519 2121 1 chr2D.!!$R1 1602
11 TraesCS2A01G019500 chr2D 9380444 9381566 1122 False 845 845 80.5940 998 2121 1 chr2D.!!$F1 1123
12 TraesCS2A01G019500 chr4D 464204609 464205725 1116 False 889 889 81.2500 998 2121 1 chr4D.!!$F1 1123
13 TraesCS2A01G019500 chr7D 589390119 589391227 1108 True 869 869 81.0570 1000 2121 1 chr7D.!!$R1 1121

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.034380 TAGCGAGTACCTGGTGAGCT 60.034 55.0 10.23 15.77 37.27 4.09 F
147 148 0.900647 AGCGAGTACCTGGTGAGCTT 60.901 55.0 10.23 0.00 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 2979 0.031178 GAGGGTTGTTGTGCTGCAAG 59.969 55.0 2.77 0.0 37.83 4.01 R
1775 3208 0.108186 TCATCGTCACCCACATCAGC 60.108 55.0 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.674958 GGAAACCCTAGTCACGGGA 58.325 57.895 1.44 0.00 44.90 5.14
35 36 0.535797 GGAAACCCTAGTCACGGGAG 59.464 60.000 1.44 0.00 44.90 4.30
36 37 0.108281 GAAACCCTAGTCACGGGAGC 60.108 60.000 1.44 0.00 44.90 4.70
37 38 1.885163 AAACCCTAGTCACGGGAGCG 61.885 60.000 1.44 0.00 44.90 5.03
38 39 3.528370 CCCTAGTCACGGGAGCGG 61.528 72.222 0.00 0.00 44.90 5.52
39 40 3.528370 CCTAGTCACGGGAGCGGG 61.528 72.222 0.00 0.00 0.00 6.13
40 41 3.528370 CTAGTCACGGGAGCGGGG 61.528 72.222 0.00 0.00 0.00 5.73
55 56 4.840005 GGGGAGCGGGCGAGAAAG 62.840 72.222 0.00 0.00 0.00 2.62
56 57 3.771160 GGGAGCGGGCGAGAAAGA 61.771 66.667 0.00 0.00 0.00 2.52
57 58 2.509561 GGAGCGGGCGAGAAAGAC 60.510 66.667 0.00 0.00 0.00 3.01
58 59 2.261671 GAGCGGGCGAGAAAGACA 59.738 61.111 0.00 0.00 0.00 3.41
59 60 1.807573 GAGCGGGCGAGAAAGACAG 60.808 63.158 0.00 0.00 0.00 3.51
60 61 3.491652 GCGGGCGAGAAAGACAGC 61.492 66.667 0.00 0.00 32.39 4.40
63 64 2.436824 GGCGAGAAAGACAGCCCC 60.437 66.667 0.00 0.00 43.54 5.80
64 65 2.347490 GCGAGAAAGACAGCCCCA 59.653 61.111 0.00 0.00 0.00 4.96
65 66 1.078143 GCGAGAAAGACAGCCCCAT 60.078 57.895 0.00 0.00 0.00 4.00
66 67 1.372087 GCGAGAAAGACAGCCCCATG 61.372 60.000 0.00 0.00 0.00 3.66
67 68 0.250234 CGAGAAAGACAGCCCCATGA 59.750 55.000 0.00 0.00 0.00 3.07
68 69 1.743996 GAGAAAGACAGCCCCATGAC 58.256 55.000 0.00 0.00 0.00 3.06
69 70 0.036010 AGAAAGACAGCCCCATGACG 60.036 55.000 0.00 0.00 0.00 4.35
70 71 1.648467 GAAAGACAGCCCCATGACGC 61.648 60.000 0.00 0.00 0.00 5.19
71 72 2.410322 AAAGACAGCCCCATGACGCA 62.410 55.000 0.00 0.00 0.00 5.24
72 73 3.127533 GACAGCCCCATGACGCAC 61.128 66.667 0.00 0.00 0.00 5.34
73 74 4.722700 ACAGCCCCATGACGCACC 62.723 66.667 0.00 0.00 0.00 5.01
77 78 4.047125 CCCCATGACGCACCCCTT 62.047 66.667 0.00 0.00 0.00 3.95
78 79 2.438434 CCCATGACGCACCCCTTC 60.438 66.667 0.00 0.00 0.00 3.46
79 80 2.438434 CCATGACGCACCCCTTCC 60.438 66.667 0.00 0.00 0.00 3.46
80 81 2.438434 CATGACGCACCCCTTCCC 60.438 66.667 0.00 0.00 0.00 3.97
81 82 2.610859 ATGACGCACCCCTTCCCT 60.611 61.111 0.00 0.00 0.00 4.20
82 83 2.231380 ATGACGCACCCCTTCCCTT 61.231 57.895 0.00 0.00 0.00 3.95
83 84 0.912487 ATGACGCACCCCTTCCCTTA 60.912 55.000 0.00 0.00 0.00 2.69
84 85 1.078637 GACGCACCCCTTCCCTTAC 60.079 63.158 0.00 0.00 0.00 2.34
85 86 1.538135 ACGCACCCCTTCCCTTACT 60.538 57.895 0.00 0.00 0.00 2.24
86 87 1.221021 CGCACCCCTTCCCTTACTC 59.779 63.158 0.00 0.00 0.00 2.59
87 88 1.550130 CGCACCCCTTCCCTTACTCA 61.550 60.000 0.00 0.00 0.00 3.41
88 89 0.035343 GCACCCCTTCCCTTACTCAC 60.035 60.000 0.00 0.00 0.00 3.51
89 90 0.618981 CACCCCTTCCCTTACTCACC 59.381 60.000 0.00 0.00 0.00 4.02
90 91 0.195096 ACCCCTTCCCTTACTCACCA 59.805 55.000 0.00 0.00 0.00 4.17
91 92 0.618981 CCCCTTCCCTTACTCACCAC 59.381 60.000 0.00 0.00 0.00 4.16
92 93 0.618981 CCCTTCCCTTACTCACCACC 59.381 60.000 0.00 0.00 0.00 4.61
93 94 0.618981 CCTTCCCTTACTCACCACCC 59.381 60.000 0.00 0.00 0.00 4.61
94 95 1.358152 CTTCCCTTACTCACCACCCA 58.642 55.000 0.00 0.00 0.00 4.51
95 96 1.003233 CTTCCCTTACTCACCACCCAC 59.997 57.143 0.00 0.00 0.00 4.61
96 97 0.192566 TCCCTTACTCACCACCCACT 59.807 55.000 0.00 0.00 0.00 4.00
97 98 1.064825 CCCTTACTCACCACCCACTT 58.935 55.000 0.00 0.00 0.00 3.16
98 99 1.003233 CCCTTACTCACCACCCACTTC 59.997 57.143 0.00 0.00 0.00 3.01
99 100 1.003233 CCTTACTCACCACCCACTTCC 59.997 57.143 0.00 0.00 0.00 3.46
100 101 1.697432 CTTACTCACCACCCACTTCCA 59.303 52.381 0.00 0.00 0.00 3.53
101 102 1.053424 TACTCACCACCCACTTCCAC 58.947 55.000 0.00 0.00 0.00 4.02
102 103 1.073199 CTCACCACCCACTTCCACC 59.927 63.158 0.00 0.00 0.00 4.61
103 104 2.281484 CACCACCCACTTCCACCG 60.281 66.667 0.00 0.00 0.00 4.94
104 105 2.770904 ACCACCCACTTCCACCGT 60.771 61.111 0.00 0.00 0.00 4.83
105 106 2.032071 CCACCCACTTCCACCGTC 59.968 66.667 0.00 0.00 0.00 4.79
106 107 2.357034 CACCCACTTCCACCGTCG 60.357 66.667 0.00 0.00 0.00 5.12
107 108 4.309950 ACCCACTTCCACCGTCGC 62.310 66.667 0.00 0.00 0.00 5.19
124 125 4.394712 CGGCGGGGAGAAGTGCTT 62.395 66.667 0.00 0.00 0.00 3.91
125 126 2.747855 GGCGGGGAGAAGTGCTTG 60.748 66.667 0.00 0.00 0.00 4.01
126 127 2.747855 GCGGGGAGAAGTGCTTGG 60.748 66.667 0.00 0.00 0.00 3.61
127 128 2.750350 CGGGGAGAAGTGCTTGGT 59.250 61.111 0.00 0.00 0.00 3.67
128 129 1.980052 CGGGGAGAAGTGCTTGGTA 59.020 57.895 0.00 0.00 0.00 3.25
129 130 0.108138 CGGGGAGAAGTGCTTGGTAG 60.108 60.000 0.00 0.00 0.00 3.18
145 146 0.100861 GTAGCGAGTACCTGGTGAGC 59.899 60.000 10.23 9.34 0.00 4.26
146 147 0.034380 TAGCGAGTACCTGGTGAGCT 60.034 55.000 10.23 15.77 37.27 4.09
147 148 0.900647 AGCGAGTACCTGGTGAGCTT 60.901 55.000 10.23 0.00 0.00 3.74
362 367 9.330063 GAGGAAAATGGAAAAAGAAAAGAACAT 57.670 29.630 0.00 0.00 0.00 2.71
423 428 6.959361 TCAAGATTAGTTTGACACAAGCTTC 58.041 36.000 0.00 0.52 30.03 3.86
599 1967 2.159653 GCCAACGAGTTGTGTCATGATC 60.160 50.000 14.00 0.00 38.85 2.92
657 2025 3.482436 TCCACGGTCAAACTTTGCTATT 58.518 40.909 0.00 0.00 0.00 1.73
967 2346 2.562298 AGACTTGGAAGAGAGCAGTCTG 59.438 50.000 0.00 0.00 42.12 3.51
1439 2854 3.612860 GTCGTAGTTGCTAACATGACAGG 59.387 47.826 0.00 0.00 33.05 4.00
1455 2870 7.558161 CATGACAGGATTTGTTATGCTTCTA 57.442 36.000 0.00 0.00 43.88 2.10
1505 2920 7.952671 AGACCATACGATGTGTATCTTTACAT 58.047 34.615 0.00 0.00 41.93 2.29
1552 2979 3.971240 CGCAAAAACTCTTGAGCTTCTTC 59.029 43.478 0.00 0.00 0.00 2.87
1575 3002 0.179020 CAGCACAACAACCCTCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
1664 3091 0.107897 TGTGTGCAGTGACGAAAGGT 60.108 50.000 0.00 0.00 0.00 3.50
1683 3110 1.929806 TTTCGCTCGCGCTTCTCCTA 61.930 55.000 5.56 0.00 39.59 2.94
1703 3130 7.833682 TCTCCTATATTTTGCACTTGAATGGAA 59.166 33.333 0.00 0.00 0.00 3.53
1775 3208 6.801539 TCTTGGTAGTTATTGAGTTTGCTG 57.198 37.500 0.00 0.00 0.00 4.41
1979 3412 4.217159 GCGTAGACCCGGCGGAAT 62.217 66.667 30.79 15.89 0.00 3.01
2121 3554 1.798813 GCGTTGCATATTGGACAAGGC 60.799 52.381 4.22 4.22 44.62 4.35
2122 3555 1.472082 CGTTGCATATTGGACAAGGCA 59.528 47.619 0.00 5.19 0.00 4.75
2123 3556 2.731968 CGTTGCATATTGGACAAGGCAC 60.732 50.000 7.89 4.61 0.00 5.01
2125 3558 3.643199 TGCATATTGGACAAGGCACTA 57.357 42.857 5.19 0.00 38.49 2.74
2126 3559 3.544684 TGCATATTGGACAAGGCACTAG 58.455 45.455 5.19 0.00 38.49 2.57
2127 3560 3.054434 TGCATATTGGACAAGGCACTAGT 60.054 43.478 0.00 0.00 38.49 2.57
2128 3561 4.163268 TGCATATTGGACAAGGCACTAGTA 59.837 41.667 0.00 0.00 38.49 1.82
2129 3562 4.752101 GCATATTGGACAAGGCACTAGTAG 59.248 45.833 0.00 0.00 38.49 2.57
2130 3563 5.453339 GCATATTGGACAAGGCACTAGTAGA 60.453 44.000 3.59 0.00 38.49 2.59
2131 3564 6.582636 CATATTGGACAAGGCACTAGTAGAA 58.417 40.000 3.59 0.00 38.49 2.10
2132 3565 4.967084 TTGGACAAGGCACTAGTAGAAA 57.033 40.909 3.59 0.00 38.49 2.52
2133 3566 4.967084 TGGACAAGGCACTAGTAGAAAA 57.033 40.909 3.59 0.00 38.49 2.29
2134 3567 5.298989 TGGACAAGGCACTAGTAGAAAAA 57.701 39.130 3.59 0.00 38.49 1.94
2135 3568 5.061179 TGGACAAGGCACTAGTAGAAAAAC 58.939 41.667 3.59 0.00 38.49 2.43
2136 3569 5.061179 GGACAAGGCACTAGTAGAAAAACA 58.939 41.667 3.59 0.00 38.49 2.83
2137 3570 5.049612 GGACAAGGCACTAGTAGAAAAACAC 60.050 44.000 3.59 0.00 38.49 3.32
2138 3571 4.820173 ACAAGGCACTAGTAGAAAAACACC 59.180 41.667 3.59 0.00 38.49 4.16
2139 3572 4.976540 AGGCACTAGTAGAAAAACACCT 57.023 40.909 3.59 0.00 36.02 4.00
2140 3573 6.183361 ACAAGGCACTAGTAGAAAAACACCTA 60.183 38.462 3.59 0.00 38.49 3.08
2141 3574 6.622427 AGGCACTAGTAGAAAAACACCTAT 57.378 37.500 3.59 0.00 36.02 2.57
2142 3575 7.017319 AGGCACTAGTAGAAAAACACCTATT 57.983 36.000 3.59 0.00 36.02 1.73
2143 3576 8.142485 AGGCACTAGTAGAAAAACACCTATTA 57.858 34.615 3.59 0.00 36.02 0.98
2144 3577 8.258708 AGGCACTAGTAGAAAAACACCTATTAG 58.741 37.037 3.59 0.00 36.02 1.73
2145 3578 8.039538 GGCACTAGTAGAAAAACACCTATTAGT 58.960 37.037 3.59 0.00 38.27 2.24
2146 3579 9.085250 GCACTAGTAGAAAAACACCTATTAGTC 57.915 37.037 3.59 0.00 36.74 2.59
2147 3580 9.583765 CACTAGTAGAAAAACACCTATTAGTCC 57.416 37.037 3.59 0.00 36.74 3.85
2148 3581 8.756927 ACTAGTAGAAAAACACCTATTAGTCCC 58.243 37.037 3.59 0.00 35.09 4.46
2149 3582 6.637657 AGTAGAAAAACACCTATTAGTCCCG 58.362 40.000 0.00 0.00 0.00 5.14
2150 3583 4.840271 AGAAAAACACCTATTAGTCCCGG 58.160 43.478 0.00 0.00 0.00 5.73
2151 3584 4.287845 AGAAAAACACCTATTAGTCCCGGT 59.712 41.667 0.00 0.00 0.00 5.28
2152 3585 4.645863 AAAACACCTATTAGTCCCGGTT 57.354 40.909 0.00 0.00 0.00 4.44
2153 3586 3.900966 AACACCTATTAGTCCCGGTTC 57.099 47.619 0.00 0.00 0.00 3.62
2154 3587 1.753073 ACACCTATTAGTCCCGGTTCG 59.247 52.381 0.00 0.00 0.00 3.95
2155 3588 1.753073 CACCTATTAGTCCCGGTTCGT 59.247 52.381 0.00 0.00 0.00 3.85
2156 3589 2.951642 CACCTATTAGTCCCGGTTCGTA 59.048 50.000 0.00 0.00 0.00 3.43
2157 3590 3.381272 CACCTATTAGTCCCGGTTCGTAA 59.619 47.826 0.00 0.00 0.00 3.18
2158 3591 3.633986 ACCTATTAGTCCCGGTTCGTAAG 59.366 47.826 0.00 0.00 0.00 2.34
2159 3592 3.005155 CCTATTAGTCCCGGTTCGTAAGG 59.995 52.174 0.00 0.00 38.47 2.69
2160 3593 1.185315 TTAGTCCCGGTTCGTAAGGG 58.815 55.000 0.00 0.00 46.40 3.95
2161 3594 1.322538 TAGTCCCGGTTCGTAAGGGC 61.323 60.000 0.00 0.00 44.70 5.19
2162 3595 3.393106 TCCCGGTTCGTAAGGGCC 61.393 66.667 0.00 0.00 44.70 5.80
2163 3596 3.396570 CCCGGTTCGTAAGGGCCT 61.397 66.667 0.00 0.00 38.51 5.19
2164 3597 2.666812 CCGGTTCGTAAGGGCCTT 59.333 61.111 24.44 24.44 38.47 4.35
2165 3598 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
2166 3599 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
2167 3600 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
2168 3601 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
2169 3602 2.625737 GGTTCGTAAGGGCCTTTAGTC 58.374 52.381 26.29 14.62 38.47 2.59
2170 3603 2.625737 GTTCGTAAGGGCCTTTAGTCC 58.374 52.381 26.29 6.64 38.47 3.85
2171 3604 1.197812 TCGTAAGGGCCTTTAGTCCC 58.802 55.000 26.29 5.03 42.94 4.46
2175 3608 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
2176 3609 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
2177 3610 1.681076 GGCCTTTAGTCCCGGTTCA 59.319 57.895 0.00 0.00 0.00 3.18
2178 3611 0.255033 GGCCTTTAGTCCCGGTTCAT 59.745 55.000 0.00 0.00 0.00 2.57
2179 3612 1.379527 GCCTTTAGTCCCGGTTCATG 58.620 55.000 0.00 0.00 0.00 3.07
2180 3613 1.065709 GCCTTTAGTCCCGGTTCATGA 60.066 52.381 0.00 0.00 0.00 3.07
2181 3614 2.617021 GCCTTTAGTCCCGGTTCATGAA 60.617 50.000 3.38 3.38 0.00 2.57
2182 3615 3.007635 CCTTTAGTCCCGGTTCATGAAC 58.992 50.000 27.16 27.16 40.45 3.18
2194 3627 2.943033 GTTCATGAACCGGGACTAATGG 59.057 50.000 25.26 0.00 35.36 3.16
2195 3628 1.488812 TCATGAACCGGGACTAATGGG 59.511 52.381 6.32 0.00 0.00 4.00
2196 3629 1.211949 CATGAACCGGGACTAATGGGT 59.788 52.381 6.32 0.00 0.00 4.51
2197 3630 0.906775 TGAACCGGGACTAATGGGTC 59.093 55.000 6.32 0.00 40.01 4.46
2198 3631 0.179092 GAACCGGGACTAATGGGTCG 60.179 60.000 6.32 0.00 37.12 4.79
2199 3632 0.906282 AACCGGGACTAATGGGTCGT 60.906 55.000 6.32 0.00 37.12 4.34
2200 3633 0.906282 ACCGGGACTAATGGGTCGTT 60.906 55.000 6.32 0.00 37.12 3.85
2201 3634 1.113788 CCGGGACTAATGGGTCGTTA 58.886 55.000 0.00 0.00 37.12 3.18
2202 3635 1.202452 CCGGGACTAATGGGTCGTTAC 60.202 57.143 0.00 0.00 37.12 2.50
2203 3636 1.753073 CGGGACTAATGGGTCGTTACT 59.247 52.381 0.00 0.00 37.12 2.24
2204 3637 2.951642 CGGGACTAATGGGTCGTTACTA 59.048 50.000 0.00 0.00 37.12 1.82
2205 3638 3.381272 CGGGACTAATGGGTCGTTACTAA 59.619 47.826 0.00 0.00 37.12 2.24
2206 3639 4.038402 CGGGACTAATGGGTCGTTACTAAT 59.962 45.833 0.00 0.00 37.12 1.73
2207 3640 5.241506 CGGGACTAATGGGTCGTTACTAATA 59.758 44.000 0.00 0.00 37.12 0.98
2208 3641 6.450545 GGGACTAATGGGTCGTTACTAATAC 58.549 44.000 0.00 0.00 37.12 1.89
2209 3642 6.450545 GGACTAATGGGTCGTTACTAATACC 58.549 44.000 0.00 0.00 37.12 2.73
2210 3643 6.266330 GGACTAATGGGTCGTTACTAATACCT 59.734 42.308 0.00 0.00 37.12 3.08
2211 3644 7.282332 ACTAATGGGTCGTTACTAATACCTC 57.718 40.000 0.00 0.00 32.38 3.85
2212 3645 5.541953 AATGGGTCGTTACTAATACCTCC 57.458 43.478 0.00 0.00 32.38 4.30
2213 3646 4.255510 TGGGTCGTTACTAATACCTCCT 57.744 45.455 0.00 0.00 32.38 3.69
2214 3647 4.210331 TGGGTCGTTACTAATACCTCCTC 58.790 47.826 0.00 0.00 32.38 3.71
2215 3648 4.079558 TGGGTCGTTACTAATACCTCCTCT 60.080 45.833 0.00 0.00 32.38 3.69
2216 3649 4.518590 GGGTCGTTACTAATACCTCCTCTC 59.481 50.000 0.00 0.00 32.38 3.20
2217 3650 5.375773 GGTCGTTACTAATACCTCCTCTCT 58.624 45.833 0.00 0.00 0.00 3.10
2218 3651 5.827267 GGTCGTTACTAATACCTCCTCTCTT 59.173 44.000 0.00 0.00 0.00 2.85
2219 3652 6.320926 GGTCGTTACTAATACCTCCTCTCTTT 59.679 42.308 0.00 0.00 0.00 2.52
2220 3653 7.500559 GGTCGTTACTAATACCTCCTCTCTTTA 59.499 40.741 0.00 0.00 0.00 1.85
2221 3654 8.558700 GTCGTTACTAATACCTCCTCTCTTTAG 58.441 40.741 0.00 0.00 0.00 1.85
2222 3655 8.270744 TCGTTACTAATACCTCCTCTCTTTAGT 58.729 37.037 0.00 0.00 34.99 2.24
2223 3656 8.558700 CGTTACTAATACCTCCTCTCTTTAGTC 58.441 40.741 0.00 0.00 33.36 2.59
2224 3657 8.849168 GTTACTAATACCTCCTCTCTTTAGTCC 58.151 40.741 0.00 0.00 33.36 3.85
2225 3658 6.375418 ACTAATACCTCCTCTCTTTAGTCCC 58.625 44.000 0.00 0.00 0.00 4.46
2226 3659 2.146920 ACCTCCTCTCTTTAGTCCCG 57.853 55.000 0.00 0.00 0.00 5.14
2227 3660 1.342175 ACCTCCTCTCTTTAGTCCCGG 60.342 57.143 0.00 0.00 0.00 5.73
2228 3661 1.342175 CCTCCTCTCTTTAGTCCCGGT 60.342 57.143 0.00 0.00 0.00 5.28
2229 3662 2.458620 CTCCTCTCTTTAGTCCCGGTT 58.541 52.381 0.00 0.00 0.00 4.44
2230 3663 2.427812 CTCCTCTCTTTAGTCCCGGTTC 59.572 54.545 0.00 0.00 0.00 3.62
2231 3664 2.042706 TCCTCTCTTTAGTCCCGGTTCT 59.957 50.000 0.00 0.15 0.00 3.01
2232 3665 3.267812 TCCTCTCTTTAGTCCCGGTTCTA 59.732 47.826 0.00 0.00 0.00 2.10
2233 3666 4.021916 CCTCTCTTTAGTCCCGGTTCTAA 58.978 47.826 0.00 6.10 0.00 2.10
2234 3667 4.142204 CCTCTCTTTAGTCCCGGTTCTAAC 60.142 50.000 12.94 0.00 0.00 2.34
2235 3668 4.410099 TCTCTTTAGTCCCGGTTCTAACA 58.590 43.478 12.94 5.03 0.00 2.41
2236 3669 4.219288 TCTCTTTAGTCCCGGTTCTAACAC 59.781 45.833 12.94 0.00 0.00 3.32
2237 3670 3.057315 TCTTTAGTCCCGGTTCTAACACG 60.057 47.826 12.94 7.12 0.00 4.49
2238 3671 2.198827 TAGTCCCGGTTCTAACACGA 57.801 50.000 0.00 0.00 0.00 4.35
2239 3672 1.331214 AGTCCCGGTTCTAACACGAA 58.669 50.000 0.00 0.00 0.00 3.85
2240 3673 1.000171 AGTCCCGGTTCTAACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
2241 3674 1.000171 GTCCCGGTTCTAACACGAACT 60.000 52.381 0.00 0.00 42.20 3.01
2242 3675 1.000060 TCCCGGTTCTAACACGAACTG 60.000 52.381 0.00 5.71 45.50 3.16
2244 3677 1.425412 CGGTTCTAACACGAACTGGG 58.575 55.000 4.93 0.00 43.36 4.45
2245 3678 1.000060 CGGTTCTAACACGAACTGGGA 60.000 52.381 4.93 0.00 43.36 4.37
2246 3679 2.410939 GGTTCTAACACGAACTGGGAC 58.589 52.381 0.00 0.00 42.20 4.46
2247 3680 2.224113 GGTTCTAACACGAACTGGGACA 60.224 50.000 0.00 0.00 42.20 4.02
2261 3694 2.584608 GACAGATGGTCCCCCACG 59.415 66.667 0.00 0.00 45.65 4.94
2262 3695 2.203938 ACAGATGGTCCCCCACGT 60.204 61.111 0.00 0.00 45.65 4.49
2263 3696 2.268920 CAGATGGTCCCCCACGTG 59.731 66.667 9.08 9.08 45.65 4.49
2264 3697 3.009115 AGATGGTCCCCCACGTGG 61.009 66.667 28.26 28.26 45.65 4.94
2265 3698 4.796495 GATGGTCCCCCACGTGGC 62.796 72.222 29.75 15.15 45.65 5.01
2306 3739 4.295199 GGGCCTTTGGTCCCGGTT 62.295 66.667 0.84 0.00 42.67 4.44
2307 3740 2.989253 GGCCTTTGGTCCCGGTTG 60.989 66.667 0.00 0.00 0.00 3.77
2308 3741 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
2309 3742 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
2310 3743 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
2311 3744 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
2312 3745 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
2328 3761 4.966787 GCACCAGCCGGGACCAAA 62.967 66.667 2.18 0.00 41.15 3.28
2329 3762 2.203422 CACCAGCCGGGACCAAAA 60.203 61.111 2.18 0.00 41.15 2.44
2330 3763 2.115266 ACCAGCCGGGACCAAAAG 59.885 61.111 2.18 0.00 41.15 2.27
2331 3764 2.676471 CCAGCCGGGACCAAAAGG 60.676 66.667 2.18 0.00 40.01 3.11
2335 3768 3.603365 CCGGGACCAAAAGGCATC 58.397 61.111 0.00 0.00 0.00 3.91
2336 3769 2.052104 CCGGGACCAAAAGGCATCC 61.052 63.158 0.00 0.00 0.00 3.51
2337 3770 1.304052 CGGGACCAAAAGGCATCCA 60.304 57.895 0.00 0.00 32.45 3.41
2338 3771 1.595093 CGGGACCAAAAGGCATCCAC 61.595 60.000 0.00 0.00 32.45 4.02
2339 3772 1.595093 GGGACCAAAAGGCATCCACG 61.595 60.000 0.00 0.00 32.45 4.94
2340 3773 1.212751 GACCAAAAGGCATCCACGC 59.787 57.895 0.00 0.00 0.00 5.34
2341 3774 2.179018 CCAAAAGGCATCCACGCG 59.821 61.111 3.53 3.53 0.00 6.01
2342 3775 2.625823 CCAAAAGGCATCCACGCGT 61.626 57.895 5.58 5.58 0.00 6.01
2343 3776 1.154225 CAAAAGGCATCCACGCGTC 60.154 57.895 9.86 0.00 0.00 5.19
2344 3777 1.599518 AAAAGGCATCCACGCGTCA 60.600 52.632 9.86 0.00 0.00 4.35
2345 3778 1.577328 AAAAGGCATCCACGCGTCAG 61.577 55.000 9.86 3.57 0.00 3.51
2348 3781 3.197790 GCATCCACGCGTCAGCAT 61.198 61.111 9.86 0.00 45.49 3.79
2349 3782 2.753966 GCATCCACGCGTCAGCATT 61.754 57.895 9.86 0.00 45.49 3.56
2350 3783 1.349627 CATCCACGCGTCAGCATTC 59.650 57.895 9.86 0.00 45.49 2.67
2351 3784 1.815421 ATCCACGCGTCAGCATTCC 60.815 57.895 9.86 0.00 45.49 3.01
2352 3785 2.520465 ATCCACGCGTCAGCATTCCA 62.520 55.000 9.86 0.00 45.49 3.53
2353 3786 2.743752 CCACGCGTCAGCATTCCAG 61.744 63.158 9.86 0.00 45.49 3.86
2354 3787 2.029288 CACGCGTCAGCATTCCAGT 61.029 57.895 9.86 0.00 45.49 4.00
2355 3788 2.029288 ACGCGTCAGCATTCCAGTG 61.029 57.895 5.58 0.00 45.49 3.66
2356 3789 2.743752 CGCGTCAGCATTCCAGTGG 61.744 63.158 1.40 1.40 45.49 4.00
2357 3790 3.044059 GCGTCAGCATTCCAGTGGC 62.044 63.158 3.51 0.00 44.35 5.01
2358 3791 1.376424 CGTCAGCATTCCAGTGGCT 60.376 57.895 3.51 0.00 38.70 4.75
2371 3804 3.473923 CAGTGGCTGGGATTTTTGTTT 57.526 42.857 0.00 0.00 0.00 2.83
2372 3805 3.807553 CAGTGGCTGGGATTTTTGTTTT 58.192 40.909 0.00 0.00 0.00 2.43
2373 3806 4.198530 CAGTGGCTGGGATTTTTGTTTTT 58.801 39.130 0.00 0.00 0.00 1.94
2402 3835 4.649705 GGGGGTGGGGGTTTTGGG 62.650 72.222 0.00 0.00 0.00 4.12
2403 3836 4.649705 GGGGTGGGGGTTTTGGGG 62.650 72.222 0.00 0.00 0.00 4.96
2404 3837 4.649705 GGGTGGGGGTTTTGGGGG 62.650 72.222 0.00 0.00 0.00 5.40
2463 3896 8.776061 AGCTAATTAATAGAGAGAAGTGTCCT 57.224 34.615 0.00 0.00 33.04 3.85
2464 3897 8.856103 AGCTAATTAATAGAGAGAAGTGTCCTC 58.144 37.037 0.00 0.00 33.04 3.71
2465 3898 8.856103 GCTAATTAATAGAGAGAAGTGTCCTCT 58.144 37.037 0.00 0.00 43.16 3.69
2474 3907 4.953579 AGAGAAGTGTCCTCTCTTATGTCC 59.046 45.833 0.00 0.00 37.55 4.02
2475 3908 3.697045 AGAAGTGTCCTCTCTTATGTCCG 59.303 47.826 0.00 0.00 0.00 4.79
2476 3909 3.088789 AGTGTCCTCTCTTATGTCCGT 57.911 47.619 0.00 0.00 0.00 4.69
2477 3910 2.755655 AGTGTCCTCTCTTATGTCCGTG 59.244 50.000 0.00 0.00 0.00 4.94
2478 3911 1.476891 TGTCCTCTCTTATGTCCGTGC 59.523 52.381 0.00 0.00 0.00 5.34
2479 3912 1.751924 GTCCTCTCTTATGTCCGTGCT 59.248 52.381 0.00 0.00 0.00 4.40
2480 3913 2.166664 GTCCTCTCTTATGTCCGTGCTT 59.833 50.000 0.00 0.00 0.00 3.91
2481 3914 2.166459 TCCTCTCTTATGTCCGTGCTTG 59.834 50.000 0.00 0.00 0.00 4.01
2482 3915 2.544685 CTCTCTTATGTCCGTGCTTGG 58.455 52.381 0.00 0.00 0.00 3.61
2483 3916 1.899814 TCTCTTATGTCCGTGCTTGGT 59.100 47.619 0.00 0.00 0.00 3.67
2484 3917 2.094182 TCTCTTATGTCCGTGCTTGGTC 60.094 50.000 0.00 0.00 0.00 4.02
2485 3918 0.999406 CTTATGTCCGTGCTTGGTCG 59.001 55.000 0.00 0.00 0.00 4.79
2486 3919 0.604073 TTATGTCCGTGCTTGGTCGA 59.396 50.000 0.00 0.00 0.00 4.20
2487 3920 0.108992 TATGTCCGTGCTTGGTCGAC 60.109 55.000 7.13 7.13 0.00 4.20
2488 3921 3.103911 GTCCGTGCTTGGTCGACG 61.104 66.667 9.92 0.00 0.00 5.12
2491 3924 2.126618 CGTGCTTGGTCGACGCTA 60.127 61.111 9.92 0.00 0.00 4.26
2492 3925 2.434134 CGTGCTTGGTCGACGCTAC 61.434 63.158 9.92 7.70 0.00 3.58
2493 3926 2.126618 TGCTTGGTCGACGCTACG 60.127 61.111 9.92 0.00 0.00 3.51
2494 3927 2.126580 GCTTGGTCGACGCTACGT 60.127 61.111 9.92 0.00 45.10 3.57
2495 3928 1.135315 GCTTGGTCGACGCTACGTA 59.865 57.895 9.92 0.00 41.37 3.57
2496 3929 1.130458 GCTTGGTCGACGCTACGTAC 61.130 60.000 9.92 0.00 41.37 3.67
2497 3930 0.445436 CTTGGTCGACGCTACGTACT 59.555 55.000 9.92 0.00 41.37 2.73
2498 3931 1.660607 CTTGGTCGACGCTACGTACTA 59.339 52.381 9.92 0.00 41.37 1.82
2499 3932 1.939974 TGGTCGACGCTACGTACTAT 58.060 50.000 9.92 0.00 41.37 2.12
2500 3933 3.092334 TGGTCGACGCTACGTACTATA 57.908 47.619 9.92 0.00 41.37 1.31
2501 3934 2.794910 TGGTCGACGCTACGTACTATAC 59.205 50.000 9.92 0.00 41.37 1.47
2502 3935 3.053455 GGTCGACGCTACGTACTATACT 58.947 50.000 9.92 0.00 41.37 2.12
2503 3936 3.491267 GGTCGACGCTACGTACTATACTT 59.509 47.826 9.92 0.00 41.37 2.24
2504 3937 4.680110 GGTCGACGCTACGTACTATACTTA 59.320 45.833 9.92 0.00 41.37 2.24
2505 3938 5.387547 GGTCGACGCTACGTACTATACTTAC 60.388 48.000 9.92 0.00 41.37 2.34
2506 3939 4.378910 TCGACGCTACGTACTATACTTACG 59.621 45.833 0.00 7.36 46.25 3.18
2524 3957 7.358770 ACTTACGTATAGAGAGGACTAGACA 57.641 40.000 0.00 0.00 35.23 3.41
2525 3958 7.209475 ACTTACGTATAGAGAGGACTAGACAC 58.791 42.308 0.00 0.00 35.23 3.67
2526 3959 4.619973 ACGTATAGAGAGGACTAGACACG 58.380 47.826 0.00 0.00 35.23 4.49
2527 3960 3.429543 CGTATAGAGAGGACTAGACACGC 59.570 52.174 0.00 0.00 35.23 5.34
2528 3961 3.849563 ATAGAGAGGACTAGACACGCT 57.150 47.619 0.00 0.00 0.00 5.07
2529 3962 4.959560 ATAGAGAGGACTAGACACGCTA 57.040 45.455 0.00 1.02 0.00 4.26
2541 3974 6.841443 CTAGACACGCTAGTTAGCTAGTAA 57.159 41.667 14.29 0.57 46.85 2.24
2542 3975 5.738118 AGACACGCTAGTTAGCTAGTAAG 57.262 43.478 14.29 9.14 46.85 2.34
2543 3976 6.564499 CTAGACACGCTAGTTAGCTAGTAAGC 60.564 46.154 14.29 11.32 46.85 3.09
2544 3977 8.845261 CTAGACACGCTAGTTAGCTAGTAAGCA 61.845 44.444 14.29 3.02 44.80 3.91
2557 3990 5.917541 CTAGTAAGCAAACGAAGGAAACA 57.082 39.130 0.00 0.00 0.00 2.83
2558 3991 4.813296 AGTAAGCAAACGAAGGAAACAG 57.187 40.909 0.00 0.00 0.00 3.16
2559 3992 4.448210 AGTAAGCAAACGAAGGAAACAGA 58.552 39.130 0.00 0.00 0.00 3.41
2560 3993 4.879545 AGTAAGCAAACGAAGGAAACAGAA 59.120 37.500 0.00 0.00 0.00 3.02
2561 3994 3.971032 AGCAAACGAAGGAAACAGAAG 57.029 42.857 0.00 0.00 0.00 2.85
2562 3995 3.541632 AGCAAACGAAGGAAACAGAAGA 58.458 40.909 0.00 0.00 0.00 2.87
2563 3996 4.137543 AGCAAACGAAGGAAACAGAAGAT 58.862 39.130 0.00 0.00 0.00 2.40
2564 3997 4.214332 AGCAAACGAAGGAAACAGAAGATC 59.786 41.667 0.00 0.00 0.00 2.75
2565 3998 4.702392 CAAACGAAGGAAACAGAAGATCG 58.298 43.478 0.00 0.00 35.16 3.69
2566 3999 3.662247 ACGAAGGAAACAGAAGATCGT 57.338 42.857 0.00 0.00 37.24 3.73
2567 4000 3.576648 ACGAAGGAAACAGAAGATCGTC 58.423 45.455 0.00 0.00 37.48 4.20
2568 4001 3.005472 ACGAAGGAAACAGAAGATCGTCA 59.995 43.478 11.35 0.00 37.48 4.35
2569 4002 4.177026 CGAAGGAAACAGAAGATCGTCAT 58.823 43.478 11.35 0.00 0.00 3.06
2570 4003 4.032217 CGAAGGAAACAGAAGATCGTCATG 59.968 45.833 11.35 8.56 0.00 3.07
2571 4004 4.808414 AGGAAACAGAAGATCGTCATGA 57.192 40.909 11.35 0.00 0.00 3.07
2572 4005 5.152623 AGGAAACAGAAGATCGTCATGAA 57.847 39.130 11.35 0.00 0.00 2.57
2573 4006 4.932200 AGGAAACAGAAGATCGTCATGAAC 59.068 41.667 11.35 0.06 0.00 3.18
2574 4007 4.690748 GGAAACAGAAGATCGTCATGAACA 59.309 41.667 11.35 0.00 0.00 3.18
2575 4008 5.352569 GGAAACAGAAGATCGTCATGAACAT 59.647 40.000 11.35 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.600638 CCCGTGACTAGGGTTTCCC 59.399 63.158 0.00 0.00 45.90 3.97
22 23 3.528370 CCCGCTCCCGTGACTAGG 61.528 72.222 0.00 0.00 0.00 3.02
23 24 3.528370 CCCCGCTCCCGTGACTAG 61.528 72.222 0.00 0.00 0.00 2.57
38 39 4.840005 CTTTCTCGCCCGCTCCCC 62.840 72.222 0.00 0.00 0.00 4.81
39 40 3.771160 TCTTTCTCGCCCGCTCCC 61.771 66.667 0.00 0.00 0.00 4.30
40 41 2.509561 GTCTTTCTCGCCCGCTCC 60.510 66.667 0.00 0.00 0.00 4.70
41 42 1.807573 CTGTCTTTCTCGCCCGCTC 60.808 63.158 0.00 0.00 0.00 5.03
42 43 2.262915 CTGTCTTTCTCGCCCGCT 59.737 61.111 0.00 0.00 0.00 5.52
43 44 3.491652 GCTGTCTTTCTCGCCCGC 61.492 66.667 0.00 0.00 0.00 6.13
44 45 2.815647 GGCTGTCTTTCTCGCCCG 60.816 66.667 0.00 0.00 36.56 6.13
46 47 2.436824 GGGGCTGTCTTTCTCGCC 60.437 66.667 0.00 0.00 41.75 5.54
47 48 1.078143 ATGGGGCTGTCTTTCTCGC 60.078 57.895 0.00 0.00 0.00 5.03
48 49 0.250234 TCATGGGGCTGTCTTTCTCG 59.750 55.000 0.00 0.00 0.00 4.04
49 50 1.743996 GTCATGGGGCTGTCTTTCTC 58.256 55.000 0.00 0.00 0.00 2.87
50 51 0.036010 CGTCATGGGGCTGTCTTTCT 60.036 55.000 0.00 0.00 0.00 2.52
51 52 1.648467 GCGTCATGGGGCTGTCTTTC 61.648 60.000 0.00 0.00 0.00 2.62
52 53 1.675641 GCGTCATGGGGCTGTCTTT 60.676 57.895 0.00 0.00 0.00 2.52
53 54 2.045926 GCGTCATGGGGCTGTCTT 60.046 61.111 0.00 0.00 0.00 3.01
54 55 3.321648 TGCGTCATGGGGCTGTCT 61.322 61.111 9.71 0.00 0.00 3.41
55 56 3.127533 GTGCGTCATGGGGCTGTC 61.128 66.667 9.71 0.00 0.00 3.51
56 57 4.722700 GGTGCGTCATGGGGCTGT 62.723 66.667 9.71 0.00 0.00 4.40
60 61 3.995506 GAAGGGGTGCGTCATGGGG 62.996 68.421 0.00 0.00 0.00 4.96
61 62 2.438434 GAAGGGGTGCGTCATGGG 60.438 66.667 0.00 0.00 0.00 4.00
62 63 2.438434 GGAAGGGGTGCGTCATGG 60.438 66.667 0.00 0.00 0.00 3.66
63 64 2.438434 GGGAAGGGGTGCGTCATG 60.438 66.667 0.00 0.00 0.00 3.07
64 65 0.912487 TAAGGGAAGGGGTGCGTCAT 60.912 55.000 0.00 0.00 0.00 3.06
65 66 1.536907 TAAGGGAAGGGGTGCGTCA 60.537 57.895 0.00 0.00 0.00 4.35
66 67 1.078637 GTAAGGGAAGGGGTGCGTC 60.079 63.158 0.00 0.00 0.00 5.19
67 68 1.538135 AGTAAGGGAAGGGGTGCGT 60.538 57.895 0.00 0.00 0.00 5.24
68 69 1.221021 GAGTAAGGGAAGGGGTGCG 59.779 63.158 0.00 0.00 0.00 5.34
69 70 0.035343 GTGAGTAAGGGAAGGGGTGC 60.035 60.000 0.00 0.00 0.00 5.01
70 71 0.618981 GGTGAGTAAGGGAAGGGGTG 59.381 60.000 0.00 0.00 0.00 4.61
71 72 0.195096 TGGTGAGTAAGGGAAGGGGT 59.805 55.000 0.00 0.00 0.00 4.95
72 73 0.618981 GTGGTGAGTAAGGGAAGGGG 59.381 60.000 0.00 0.00 0.00 4.79
73 74 0.618981 GGTGGTGAGTAAGGGAAGGG 59.381 60.000 0.00 0.00 0.00 3.95
74 75 0.618981 GGGTGGTGAGTAAGGGAAGG 59.381 60.000 0.00 0.00 0.00 3.46
75 76 1.003233 GTGGGTGGTGAGTAAGGGAAG 59.997 57.143 0.00 0.00 0.00 3.46
76 77 1.061546 GTGGGTGGTGAGTAAGGGAA 58.938 55.000 0.00 0.00 0.00 3.97
77 78 0.192566 AGTGGGTGGTGAGTAAGGGA 59.807 55.000 0.00 0.00 0.00 4.20
78 79 1.003233 GAAGTGGGTGGTGAGTAAGGG 59.997 57.143 0.00 0.00 0.00 3.95
79 80 1.003233 GGAAGTGGGTGGTGAGTAAGG 59.997 57.143 0.00 0.00 0.00 2.69
80 81 1.697432 TGGAAGTGGGTGGTGAGTAAG 59.303 52.381 0.00 0.00 0.00 2.34
81 82 1.418637 GTGGAAGTGGGTGGTGAGTAA 59.581 52.381 0.00 0.00 0.00 2.24
82 83 1.053424 GTGGAAGTGGGTGGTGAGTA 58.947 55.000 0.00 0.00 0.00 2.59
83 84 1.705997 GGTGGAAGTGGGTGGTGAGT 61.706 60.000 0.00 0.00 0.00 3.41
84 85 1.073199 GGTGGAAGTGGGTGGTGAG 59.927 63.158 0.00 0.00 0.00 3.51
85 86 2.813726 CGGTGGAAGTGGGTGGTGA 61.814 63.158 0.00 0.00 0.00 4.02
86 87 2.281484 CGGTGGAAGTGGGTGGTG 60.281 66.667 0.00 0.00 0.00 4.17
87 88 2.770904 ACGGTGGAAGTGGGTGGT 60.771 61.111 0.00 0.00 0.00 4.16
88 89 2.032071 GACGGTGGAAGTGGGTGG 59.968 66.667 0.00 0.00 0.00 4.61
89 90 2.357034 CGACGGTGGAAGTGGGTG 60.357 66.667 0.00 0.00 0.00 4.61
90 91 4.309950 GCGACGGTGGAAGTGGGT 62.310 66.667 0.00 0.00 0.00 4.51
107 108 4.394712 AAGCACTTCTCCCCGCCG 62.395 66.667 0.00 0.00 0.00 6.46
108 109 2.747855 CAAGCACTTCTCCCCGCC 60.748 66.667 0.00 0.00 0.00 6.13
109 110 2.180159 TACCAAGCACTTCTCCCCGC 62.180 60.000 0.00 0.00 0.00 6.13
110 111 0.108138 CTACCAAGCACTTCTCCCCG 60.108 60.000 0.00 0.00 0.00 5.73
111 112 3.863407 CTACCAAGCACTTCTCCCC 57.137 57.895 0.00 0.00 0.00 4.81
125 126 0.739561 CTCACCAGGTACTCGCTACC 59.260 60.000 0.00 1.77 45.19 3.18
126 127 0.100861 GCTCACCAGGTACTCGCTAC 59.899 60.000 0.00 0.00 34.60 3.58
127 128 0.034380 AGCTCACCAGGTACTCGCTA 60.034 55.000 0.00 0.00 34.60 4.26
128 129 0.900647 AAGCTCACCAGGTACTCGCT 60.901 55.000 0.00 0.00 34.60 4.93
129 130 0.737715 CAAGCTCACCAGGTACTCGC 60.738 60.000 0.00 0.00 34.60 5.03
130 131 0.603569 ACAAGCTCACCAGGTACTCG 59.396 55.000 0.00 0.00 34.60 4.18
131 132 2.166664 CCTACAAGCTCACCAGGTACTC 59.833 54.545 0.00 0.00 34.60 2.59
132 133 2.180276 CCTACAAGCTCACCAGGTACT 58.820 52.381 0.00 0.00 43.88 2.73
133 134 1.207329 CCCTACAAGCTCACCAGGTAC 59.793 57.143 0.00 0.00 0.00 3.34
134 135 1.568504 CCCTACAAGCTCACCAGGTA 58.431 55.000 0.00 0.00 0.00 3.08
135 136 1.842381 GCCCTACAAGCTCACCAGGT 61.842 60.000 0.00 0.00 0.00 4.00
136 137 1.078143 GCCCTACAAGCTCACCAGG 60.078 63.158 0.00 0.00 0.00 4.45
137 138 1.448540 CGCCCTACAAGCTCACCAG 60.449 63.158 0.00 0.00 0.00 4.00
138 139 1.764571 AACGCCCTACAAGCTCACCA 61.765 55.000 0.00 0.00 0.00 4.17
139 140 1.003718 AACGCCCTACAAGCTCACC 60.004 57.895 0.00 0.00 0.00 4.02
140 141 0.037232 AGAACGCCCTACAAGCTCAC 60.037 55.000 0.00 0.00 0.00 3.51
141 142 0.037326 CAGAACGCCCTACAAGCTCA 60.037 55.000 0.00 0.00 0.00 4.26
142 143 0.741221 CCAGAACGCCCTACAAGCTC 60.741 60.000 0.00 0.00 0.00 4.09
143 144 1.192146 TCCAGAACGCCCTACAAGCT 61.192 55.000 0.00 0.00 0.00 3.74
144 145 0.107654 ATCCAGAACGCCCTACAAGC 60.108 55.000 0.00 0.00 0.00 4.01
145 146 3.069586 TGATATCCAGAACGCCCTACAAG 59.930 47.826 0.00 0.00 0.00 3.16
146 147 3.035363 TGATATCCAGAACGCCCTACAA 58.965 45.455 0.00 0.00 0.00 2.41
147 148 2.628178 CTGATATCCAGAACGCCCTACA 59.372 50.000 0.00 0.00 45.78 2.74
240 245 8.450578 TCTCATACAATTGATGTACATTTCCC 57.549 34.615 13.59 0.00 46.90 3.97
362 367 5.553123 TCTAAATTTCTAGCCCGTTGTTGA 58.447 37.500 0.00 0.00 0.00 3.18
599 1967 4.478206 TCTAGCTGAATTTCAGTGGAGG 57.522 45.455 23.66 12.12 45.94 4.30
657 2025 3.832490 CGAGGAATATCATCCACCCTACA 59.168 47.826 0.00 0.00 42.27 2.74
1439 2854 6.543831 ACATCCACCTAGAAGCATAACAAATC 59.456 38.462 0.00 0.00 0.00 2.17
1455 2870 0.036732 ACATGCGTTCACATCCACCT 59.963 50.000 0.00 0.00 0.00 4.00
1505 2920 3.004839 TCGGCCGAACATGAAATTTTCAA 59.995 39.130 28.99 0.00 43.95 2.69
1552 2979 0.031178 GAGGGTTGTTGTGCTGCAAG 59.969 55.000 2.77 0.00 37.83 4.01
1575 3002 0.394762 AACGGCTGGTGCATGATCAT 60.395 50.000 1.18 1.18 41.91 2.45
1683 3110 6.369615 GCTGTTTCCATTCAAGTGCAAAATAT 59.630 34.615 0.00 0.00 0.00 1.28
1703 3130 5.241728 GGTCAAGTATCTTCAAAAGGCTGTT 59.758 40.000 0.00 0.00 0.00 3.16
1775 3208 0.108186 TCATCGTCACCCACATCAGC 60.108 55.000 0.00 0.00 0.00 4.26
1979 3412 3.003689 GCTATTTGTACTAGTCGCGGGTA 59.996 47.826 6.13 2.12 0.00 3.69
2121 3554 9.583765 GGACTAATAGGTGTTTTTCTACTAGTG 57.416 37.037 5.39 0.00 31.36 2.74
2122 3555 8.756927 GGGACTAATAGGTGTTTTTCTACTAGT 58.243 37.037 0.00 0.00 33.11 2.57
2123 3556 7.919621 CGGGACTAATAGGTGTTTTTCTACTAG 59.080 40.741 0.00 0.00 0.00 2.57
2124 3557 7.147846 CCGGGACTAATAGGTGTTTTTCTACTA 60.148 40.741 0.00 0.00 0.00 1.82
2125 3558 6.351626 CCGGGACTAATAGGTGTTTTTCTACT 60.352 42.308 0.00 0.00 0.00 2.57
2126 3559 5.814188 CCGGGACTAATAGGTGTTTTTCTAC 59.186 44.000 0.00 0.00 0.00 2.59
2127 3560 5.484998 ACCGGGACTAATAGGTGTTTTTCTA 59.515 40.000 6.32 0.00 35.36 2.10
2128 3561 4.287845 ACCGGGACTAATAGGTGTTTTTCT 59.712 41.667 6.32 0.00 35.36 2.52
2129 3562 4.582869 ACCGGGACTAATAGGTGTTTTTC 58.417 43.478 6.32 0.00 35.36 2.29
2130 3563 4.645863 ACCGGGACTAATAGGTGTTTTT 57.354 40.909 6.32 0.00 35.36 1.94
2131 3564 4.582869 GAACCGGGACTAATAGGTGTTTT 58.417 43.478 6.32 0.00 37.03 2.43
2132 3565 3.368739 CGAACCGGGACTAATAGGTGTTT 60.369 47.826 6.32 0.00 37.03 2.83
2133 3566 2.167075 CGAACCGGGACTAATAGGTGTT 59.833 50.000 6.32 0.00 37.03 3.32
2134 3567 1.753073 CGAACCGGGACTAATAGGTGT 59.247 52.381 6.32 0.00 37.03 4.16
2135 3568 1.753073 ACGAACCGGGACTAATAGGTG 59.247 52.381 6.32 0.00 37.03 4.00
2136 3569 2.149973 ACGAACCGGGACTAATAGGT 57.850 50.000 6.32 0.00 38.88 3.08
2137 3570 3.005155 CCTTACGAACCGGGACTAATAGG 59.995 52.174 6.32 0.00 0.00 2.57
2138 3571 3.005155 CCCTTACGAACCGGGACTAATAG 59.995 52.174 6.32 0.00 40.55 1.73
2139 3572 2.958355 CCCTTACGAACCGGGACTAATA 59.042 50.000 6.32 0.00 40.55 0.98
2140 3573 1.758862 CCCTTACGAACCGGGACTAAT 59.241 52.381 6.32 0.00 40.55 1.73
2141 3574 1.185315 CCCTTACGAACCGGGACTAA 58.815 55.000 6.32 0.00 40.55 2.24
2142 3575 1.322538 GCCCTTACGAACCGGGACTA 61.323 60.000 6.32 0.00 40.55 2.59
2143 3576 2.653087 GCCCTTACGAACCGGGACT 61.653 63.158 6.32 0.00 40.55 3.85
2144 3577 2.125391 GCCCTTACGAACCGGGAC 60.125 66.667 6.32 0.00 40.55 4.46
2145 3578 3.393106 GGCCCTTACGAACCGGGA 61.393 66.667 6.32 0.00 40.55 5.14
2146 3579 2.473891 AAAGGCCCTTACGAACCGGG 62.474 60.000 6.32 0.00 41.06 5.73
2147 3580 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
2148 3581 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
2149 3582 2.625737 GACTAAAGGCCCTTACGAACC 58.374 52.381 0.00 0.00 0.00 3.62
2150 3583 2.625737 GGACTAAAGGCCCTTACGAAC 58.374 52.381 0.00 0.00 0.00 3.95
2151 3584 1.556451 GGGACTAAAGGCCCTTACGAA 59.444 52.381 14.19 0.00 41.31 3.85
2152 3585 1.197812 GGGACTAAAGGCCCTTACGA 58.802 55.000 14.19 0.00 41.31 3.43
2153 3586 0.179092 CGGGACTAAAGGCCCTTACG 60.179 60.000 18.97 1.56 42.40 3.18
2154 3587 0.179702 CCGGGACTAAAGGCCCTTAC 59.820 60.000 18.97 0.00 42.40 2.34
2155 3588 0.252835 ACCGGGACTAAAGGCCCTTA 60.253 55.000 18.97 0.00 42.40 2.69
2156 3589 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
2157 3590 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
2158 3591 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
2159 3592 0.255033 ATGAACCGGGACTAAAGGCC 59.745 55.000 6.32 0.00 0.00 5.19
2160 3593 1.065709 TCATGAACCGGGACTAAAGGC 60.066 52.381 6.32 0.00 0.00 4.35
2161 3594 3.007635 GTTCATGAACCGGGACTAAAGG 58.992 50.000 25.26 0.00 35.36 3.11
2173 3606 2.943033 CCATTAGTCCCGGTTCATGAAC 59.057 50.000 27.16 27.16 40.45 3.18
2174 3607 2.092646 CCCATTAGTCCCGGTTCATGAA 60.093 50.000 3.38 3.38 0.00 2.57
2175 3608 1.488812 CCCATTAGTCCCGGTTCATGA 59.511 52.381 0.00 0.00 0.00 3.07
2176 3609 1.211949 ACCCATTAGTCCCGGTTCATG 59.788 52.381 0.00 0.00 0.00 3.07
2177 3610 1.489230 GACCCATTAGTCCCGGTTCAT 59.511 52.381 0.00 0.00 0.00 2.57
2178 3611 0.906775 GACCCATTAGTCCCGGTTCA 59.093 55.000 0.00 0.00 0.00 3.18
2179 3612 0.179092 CGACCCATTAGTCCCGGTTC 60.179 60.000 0.00 0.00 32.91 3.62
2180 3613 0.906282 ACGACCCATTAGTCCCGGTT 60.906 55.000 0.00 0.00 32.91 4.44
2181 3614 0.906282 AACGACCCATTAGTCCCGGT 60.906 55.000 0.00 0.00 32.91 5.28
2182 3615 1.113788 TAACGACCCATTAGTCCCGG 58.886 55.000 0.00 0.00 32.91 5.73
2183 3616 1.753073 AGTAACGACCCATTAGTCCCG 59.247 52.381 0.00 0.00 32.91 5.14
2184 3617 5.541953 ATTAGTAACGACCCATTAGTCCC 57.458 43.478 0.00 0.00 32.91 4.46
2185 3618 6.266330 AGGTATTAGTAACGACCCATTAGTCC 59.734 42.308 10.80 0.00 32.91 3.85
2186 3619 7.282332 AGGTATTAGTAACGACCCATTAGTC 57.718 40.000 10.80 0.00 31.93 2.59
2187 3620 6.266330 GGAGGTATTAGTAACGACCCATTAGT 59.734 42.308 10.80 0.00 31.93 2.24
2188 3621 6.492772 AGGAGGTATTAGTAACGACCCATTAG 59.507 42.308 10.80 0.00 31.93 1.73
2189 3622 6.376248 AGGAGGTATTAGTAACGACCCATTA 58.624 40.000 10.80 0.00 31.93 1.90
2190 3623 5.214293 AGGAGGTATTAGTAACGACCCATT 58.786 41.667 10.80 0.00 31.93 3.16
2191 3624 4.812653 AGGAGGTATTAGTAACGACCCAT 58.187 43.478 10.80 1.08 31.93 4.00
2192 3625 4.079558 AGAGGAGGTATTAGTAACGACCCA 60.080 45.833 10.80 0.00 31.93 4.51
2193 3626 4.468713 AGAGGAGGTATTAGTAACGACCC 58.531 47.826 10.80 4.78 31.93 4.46
2194 3627 5.375773 AGAGAGGAGGTATTAGTAACGACC 58.624 45.833 7.47 7.47 0.00 4.79
2195 3628 6.940831 AAGAGAGGAGGTATTAGTAACGAC 57.059 41.667 0.00 0.00 0.00 4.34
2196 3629 8.270744 ACTAAAGAGAGGAGGTATTAGTAACGA 58.729 37.037 0.00 0.00 33.23 3.85
2197 3630 8.449251 ACTAAAGAGAGGAGGTATTAGTAACG 57.551 38.462 0.00 0.00 33.23 3.18
2198 3631 8.849168 GGACTAAAGAGAGGAGGTATTAGTAAC 58.151 40.741 0.00 0.00 34.66 2.50
2199 3632 8.003629 GGGACTAAAGAGAGGAGGTATTAGTAA 58.996 40.741 0.00 0.00 34.66 2.24
2200 3633 7.525165 GGGACTAAAGAGAGGAGGTATTAGTA 58.475 42.308 0.00 0.00 34.66 1.82
2201 3634 6.375418 GGGACTAAAGAGAGGAGGTATTAGT 58.625 44.000 0.00 0.00 36.57 2.24
2202 3635 5.474189 CGGGACTAAAGAGAGGAGGTATTAG 59.526 48.000 0.00 0.00 0.00 1.73
2203 3636 5.383476 CGGGACTAAAGAGAGGAGGTATTA 58.617 45.833 0.00 0.00 0.00 0.98
2204 3637 4.216708 CGGGACTAAAGAGAGGAGGTATT 58.783 47.826 0.00 0.00 0.00 1.89
2205 3638 3.436761 CCGGGACTAAAGAGAGGAGGTAT 60.437 52.174 0.00 0.00 0.00 2.73
2206 3639 2.091994 CCGGGACTAAAGAGAGGAGGTA 60.092 54.545 0.00 0.00 0.00 3.08
2207 3640 1.342175 CCGGGACTAAAGAGAGGAGGT 60.342 57.143 0.00 0.00 0.00 3.85
2208 3641 1.342175 ACCGGGACTAAAGAGAGGAGG 60.342 57.143 6.32 0.00 0.00 4.30
2209 3642 2.146920 ACCGGGACTAAAGAGAGGAG 57.853 55.000 6.32 0.00 0.00 3.69
2210 3643 2.042706 AGAACCGGGACTAAAGAGAGGA 59.957 50.000 6.32 0.00 0.00 3.71
2211 3644 2.458620 AGAACCGGGACTAAAGAGAGG 58.541 52.381 6.32 0.00 0.00 3.69
2212 3645 4.461781 TGTTAGAACCGGGACTAAAGAGAG 59.538 45.833 19.13 0.00 31.76 3.20
2213 3646 4.219288 GTGTTAGAACCGGGACTAAAGAGA 59.781 45.833 19.13 6.29 31.76 3.10
2214 3647 4.492611 GTGTTAGAACCGGGACTAAAGAG 58.507 47.826 19.13 0.00 31.76 2.85
2215 3648 3.057315 CGTGTTAGAACCGGGACTAAAGA 60.057 47.826 19.13 9.94 31.76 2.52
2216 3649 3.057315 TCGTGTTAGAACCGGGACTAAAG 60.057 47.826 19.13 14.69 31.76 1.85
2217 3650 2.890311 TCGTGTTAGAACCGGGACTAAA 59.110 45.455 19.13 10.40 31.76 1.85
2218 3651 2.513753 TCGTGTTAGAACCGGGACTAA 58.486 47.619 6.32 12.25 0.00 2.24
2219 3652 2.198827 TCGTGTTAGAACCGGGACTA 57.801 50.000 6.32 6.06 0.00 2.59
2220 3653 1.000171 GTTCGTGTTAGAACCGGGACT 60.000 52.381 6.32 7.19 43.33 3.85
2221 3654 1.422388 GTTCGTGTTAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
2222 3655 3.892200 GTTCGTGTTAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
2228 3661 2.960384 TCTGTCCCAGTTCGTGTTAGAA 59.040 45.455 0.00 0.00 32.61 2.10
2229 3662 2.589720 TCTGTCCCAGTTCGTGTTAGA 58.410 47.619 0.00 0.00 32.61 2.10
2230 3663 3.254060 CATCTGTCCCAGTTCGTGTTAG 58.746 50.000 0.00 0.00 32.61 2.34
2231 3664 2.028476 CCATCTGTCCCAGTTCGTGTTA 60.028 50.000 0.00 0.00 32.61 2.41
2232 3665 1.270839 CCATCTGTCCCAGTTCGTGTT 60.271 52.381 0.00 0.00 32.61 3.32
2233 3666 0.321671 CCATCTGTCCCAGTTCGTGT 59.678 55.000 0.00 0.00 32.61 4.49
2234 3667 0.321671 ACCATCTGTCCCAGTTCGTG 59.678 55.000 0.00 0.00 32.61 4.35
2235 3668 0.608640 GACCATCTGTCCCAGTTCGT 59.391 55.000 0.00 0.00 38.09 3.85
2236 3669 3.442996 GACCATCTGTCCCAGTTCG 57.557 57.895 0.00 0.00 38.09 3.95
2289 3722 4.295199 AACCGGGACCAAAGGCCC 62.295 66.667 6.32 0.00 36.26 5.80
2290 3723 2.989253 CAACCGGGACCAAAGGCC 60.989 66.667 6.32 0.00 0.00 5.19
2291 3724 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
2292 3725 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
2293 3726 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
2294 3727 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
2295 3728 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
2311 3744 4.966787 TTTGGTCCCGGCTGGTGC 62.967 66.667 11.58 2.18 38.76 5.01
2312 3745 2.203422 TTTTGGTCCCGGCTGGTG 60.203 61.111 11.58 1.93 34.77 4.17
2313 3746 2.115266 CTTTTGGTCCCGGCTGGT 59.885 61.111 11.58 0.00 34.77 4.00
2314 3747 2.676471 CCTTTTGGTCCCGGCTGG 60.676 66.667 3.88 3.88 34.07 4.85
2315 3748 3.373565 GCCTTTTGGTCCCGGCTG 61.374 66.667 0.00 0.00 42.99 4.85
2316 3749 3.224007 ATGCCTTTTGGTCCCGGCT 62.224 57.895 0.00 0.00 42.90 5.52
2317 3750 2.679996 ATGCCTTTTGGTCCCGGC 60.680 61.111 0.00 0.00 42.99 6.13
2318 3751 2.052104 GGATGCCTTTTGGTCCCGG 61.052 63.158 0.00 0.00 42.99 5.73
2319 3752 1.304052 TGGATGCCTTTTGGTCCCG 60.304 57.895 0.00 0.00 42.99 5.14
2320 3753 1.595093 CGTGGATGCCTTTTGGTCCC 61.595 60.000 0.00 0.00 42.99 4.46
2321 3754 1.883021 CGTGGATGCCTTTTGGTCC 59.117 57.895 0.00 0.00 42.99 4.46
2322 3755 1.212751 GCGTGGATGCCTTTTGGTC 59.787 57.895 0.00 0.00 42.99 4.02
2323 3756 2.625823 CGCGTGGATGCCTTTTGGT 61.626 57.895 0.00 0.00 42.99 3.67
2324 3757 2.179018 CGCGTGGATGCCTTTTGG 59.821 61.111 0.00 0.00 44.18 3.28
2325 3758 1.154225 GACGCGTGGATGCCTTTTG 60.154 57.895 20.70 0.00 0.00 2.44
2326 3759 1.577328 CTGACGCGTGGATGCCTTTT 61.577 55.000 20.70 0.00 0.00 2.27
2327 3760 2.031919 TGACGCGTGGATGCCTTT 59.968 55.556 20.70 0.00 0.00 3.11
2328 3761 2.434884 CTGACGCGTGGATGCCTT 60.435 61.111 20.70 0.00 0.00 4.35
2331 3764 2.637715 GAATGCTGACGCGTGGATGC 62.638 60.000 20.70 15.70 39.65 3.91
2332 3765 1.349627 GAATGCTGACGCGTGGATG 59.650 57.895 20.70 4.59 39.65 3.51
2333 3766 1.815421 GGAATGCTGACGCGTGGAT 60.815 57.895 20.70 7.22 39.65 3.41
2334 3767 2.434185 GGAATGCTGACGCGTGGA 60.434 61.111 20.70 4.37 39.65 4.02
2335 3768 2.741985 TGGAATGCTGACGCGTGG 60.742 61.111 20.70 10.85 39.65 4.94
2336 3769 2.029288 ACTGGAATGCTGACGCGTG 61.029 57.895 20.70 3.71 39.65 5.34
2337 3770 2.029288 CACTGGAATGCTGACGCGT 61.029 57.895 13.85 13.85 39.65 6.01
2338 3771 2.743752 CCACTGGAATGCTGACGCG 61.744 63.158 3.53 3.53 39.65 6.01
2339 3772 3.044059 GCCACTGGAATGCTGACGC 62.044 63.158 0.00 0.00 0.00 5.19
2340 3773 1.376424 AGCCACTGGAATGCTGACG 60.376 57.895 0.00 0.00 33.23 4.35
2341 3774 4.730487 AGCCACTGGAATGCTGAC 57.270 55.556 0.00 0.00 33.23 3.51
2351 3784 3.473923 AAACAAAAATCCCAGCCACTG 57.526 42.857 0.00 0.00 0.00 3.66
2352 3785 4.502105 AAAAACAAAAATCCCAGCCACT 57.498 36.364 0.00 0.00 0.00 4.00
2385 3818 4.649705 CCCAAAACCCCCACCCCC 62.650 72.222 0.00 0.00 0.00 5.40
2386 3819 4.649705 CCCCAAAACCCCCACCCC 62.650 72.222 0.00 0.00 0.00 4.95
2387 3820 4.649705 CCCCCAAAACCCCCACCC 62.650 72.222 0.00 0.00 0.00 4.61
2437 3870 9.869667 AGGACACTTCTCTCTATTAATTAGCTA 57.130 33.333 0.00 0.00 0.00 3.32
2438 3871 8.776061 AGGACACTTCTCTCTATTAATTAGCT 57.224 34.615 0.00 0.00 0.00 3.32
2439 3872 8.856103 AGAGGACACTTCTCTCTATTAATTAGC 58.144 37.037 0.00 0.00 36.99 3.09
2451 3884 4.953579 GGACATAAGAGAGGACACTTCTCT 59.046 45.833 7.43 7.43 43.56 3.10
2452 3885 4.201970 CGGACATAAGAGAGGACACTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
2453 3886 3.697045 CGGACATAAGAGAGGACACTTCT 59.303 47.826 0.00 0.00 0.00 2.85
2454 3887 3.444388 ACGGACATAAGAGAGGACACTTC 59.556 47.826 0.00 0.00 0.00 3.01
2455 3888 3.193691 CACGGACATAAGAGAGGACACTT 59.806 47.826 0.00 0.00 0.00 3.16
2456 3889 2.755655 CACGGACATAAGAGAGGACACT 59.244 50.000 0.00 0.00 0.00 3.55
2457 3890 2.735762 GCACGGACATAAGAGAGGACAC 60.736 54.545 0.00 0.00 0.00 3.67
2458 3891 1.476891 GCACGGACATAAGAGAGGACA 59.523 52.381 0.00 0.00 0.00 4.02
2459 3892 1.751924 AGCACGGACATAAGAGAGGAC 59.248 52.381 0.00 0.00 0.00 3.85
2460 3893 2.145397 AGCACGGACATAAGAGAGGA 57.855 50.000 0.00 0.00 0.00 3.71
2461 3894 2.544685 CAAGCACGGACATAAGAGAGG 58.455 52.381 0.00 0.00 0.00 3.69
2462 3895 2.093973 ACCAAGCACGGACATAAGAGAG 60.094 50.000 0.00 0.00 0.00 3.20
2463 3896 1.899814 ACCAAGCACGGACATAAGAGA 59.100 47.619 0.00 0.00 0.00 3.10
2464 3897 2.271800 GACCAAGCACGGACATAAGAG 58.728 52.381 0.00 0.00 0.00 2.85
2465 3898 1.403647 CGACCAAGCACGGACATAAGA 60.404 52.381 0.00 0.00 0.00 2.10
2466 3899 0.999406 CGACCAAGCACGGACATAAG 59.001 55.000 0.00 0.00 0.00 1.73
2467 3900 0.604073 TCGACCAAGCACGGACATAA 59.396 50.000 0.00 0.00 0.00 1.90
2468 3901 0.108992 GTCGACCAAGCACGGACATA 60.109 55.000 3.51 0.00 0.00 2.29
2469 3902 1.374252 GTCGACCAAGCACGGACAT 60.374 57.895 3.51 0.00 0.00 3.06
2470 3903 2.028484 GTCGACCAAGCACGGACA 59.972 61.111 3.51 0.00 0.00 4.02
2471 3904 3.103911 CGTCGACCAAGCACGGAC 61.104 66.667 10.58 0.00 0.00 4.79
2473 3906 3.620300 TAGCGTCGACCAAGCACGG 62.620 63.158 10.58 0.00 34.04 4.94
2474 3907 2.126618 TAGCGTCGACCAAGCACG 60.127 61.111 10.58 0.00 36.60 5.34
2475 3908 2.434134 CGTAGCGTCGACCAAGCAC 61.434 63.158 10.58 7.92 0.00 4.40
2476 3909 1.576451 TACGTAGCGTCGACCAAGCA 61.576 55.000 10.58 0.00 41.54 3.91
2477 3910 1.130458 GTACGTAGCGTCGACCAAGC 61.130 60.000 10.58 7.95 41.54 4.01
2478 3911 0.445436 AGTACGTAGCGTCGACCAAG 59.555 55.000 10.58 0.00 41.54 3.61
2479 3912 1.720805 TAGTACGTAGCGTCGACCAA 58.279 50.000 10.58 0.00 41.54 3.67
2480 3913 1.939974 ATAGTACGTAGCGTCGACCA 58.060 50.000 10.58 0.00 41.54 4.02
2481 3914 3.053455 AGTATAGTACGTAGCGTCGACC 58.947 50.000 10.58 2.76 41.54 4.79
2482 3915 4.700596 AAGTATAGTACGTAGCGTCGAC 57.299 45.455 5.18 5.18 41.54 4.20
2483 3916 4.378910 CGTAAGTATAGTACGTAGCGTCGA 59.621 45.833 10.18 0.00 41.54 4.20
2484 3917 4.609587 CGTAAGTATAGTACGTAGCGTCG 58.390 47.826 0.00 2.37 41.54 5.12
2502 3935 6.212235 CGTGTCTAGTCCTCTCTATACGTAA 58.788 44.000 0.00 0.00 0.00 3.18
2503 3936 5.767269 CGTGTCTAGTCCTCTCTATACGTA 58.233 45.833 0.00 0.00 0.00 3.57
2504 3937 4.619973 CGTGTCTAGTCCTCTCTATACGT 58.380 47.826 0.00 0.00 0.00 3.57
2505 3938 3.429543 GCGTGTCTAGTCCTCTCTATACG 59.570 52.174 0.00 0.00 0.00 3.06
2506 3939 4.634199 AGCGTGTCTAGTCCTCTCTATAC 58.366 47.826 0.00 0.00 0.00 1.47
2507 3940 4.959560 AGCGTGTCTAGTCCTCTCTATA 57.040 45.455 0.00 0.00 0.00 1.31
2508 3941 3.849563 AGCGTGTCTAGTCCTCTCTAT 57.150 47.619 0.00 0.00 0.00 1.98
2509 3942 4.325028 CTAGCGTGTCTAGTCCTCTCTA 57.675 50.000 0.00 0.00 39.91 2.43
2510 3943 3.188159 CTAGCGTGTCTAGTCCTCTCT 57.812 52.381 0.00 0.00 39.91 3.10
2535 3968 5.694910 TCTGTTTCCTTCGTTTGCTTACTAG 59.305 40.000 0.00 0.00 0.00 2.57
2536 3969 5.603596 TCTGTTTCCTTCGTTTGCTTACTA 58.396 37.500 0.00 0.00 0.00 1.82
2537 3970 4.448210 TCTGTTTCCTTCGTTTGCTTACT 58.552 39.130 0.00 0.00 0.00 2.24
2538 3971 4.806342 TCTGTTTCCTTCGTTTGCTTAC 57.194 40.909 0.00 0.00 0.00 2.34
2539 3972 5.120399 TCTTCTGTTTCCTTCGTTTGCTTA 58.880 37.500 0.00 0.00 0.00 3.09
2540 3973 3.945285 TCTTCTGTTTCCTTCGTTTGCTT 59.055 39.130 0.00 0.00 0.00 3.91
2541 3974 3.541632 TCTTCTGTTTCCTTCGTTTGCT 58.458 40.909 0.00 0.00 0.00 3.91
2542 3975 3.963383 TCTTCTGTTTCCTTCGTTTGC 57.037 42.857 0.00 0.00 0.00 3.68
2543 3976 4.211374 ACGATCTTCTGTTTCCTTCGTTTG 59.789 41.667 0.00 0.00 35.04 2.93
2544 3977 4.377897 ACGATCTTCTGTTTCCTTCGTTT 58.622 39.130 0.00 0.00 35.04 3.60
2545 3978 3.988517 GACGATCTTCTGTTTCCTTCGTT 59.011 43.478 0.00 0.00 38.34 3.85
2546 3979 3.005472 TGACGATCTTCTGTTTCCTTCGT 59.995 43.478 0.48 0.00 40.62 3.85
2547 3980 3.575630 TGACGATCTTCTGTTTCCTTCG 58.424 45.455 0.48 0.00 0.00 3.79
2548 3981 5.171476 TCATGACGATCTTCTGTTTCCTTC 58.829 41.667 0.48 0.00 0.00 3.46
2549 3982 5.152623 TCATGACGATCTTCTGTTTCCTT 57.847 39.130 0.48 0.00 0.00 3.36
2550 3983 4.808414 TCATGACGATCTTCTGTTTCCT 57.192 40.909 0.48 0.00 0.00 3.36
2551 3984 4.690748 TGTTCATGACGATCTTCTGTTTCC 59.309 41.667 0.00 0.00 0.00 3.13
2552 3985 5.845985 TGTTCATGACGATCTTCTGTTTC 57.154 39.130 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.