Multiple sequence alignment - TraesCS2A01G018800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G018800 chr2A 100.000 3748 0 0 1 3748 8758713 8754966 0.000000e+00 6922.0
1 TraesCS2A01G018800 chr2A 80.408 883 149 17 1123 1987 3864738 3863862 0.000000e+00 651.0
2 TraesCS2A01G018800 chr2A 83.866 657 95 10 2108 2758 11308699 11308048 1.910000e-172 616.0
3 TraesCS2A01G018800 chr2A 79.318 880 164 11 1123 1987 11025501 11024625 5.360000e-168 601.0
4 TraesCS2A01G018800 chr2A 78.291 866 179 5 1123 1985 11309669 11308810 1.970000e-152 549.0
5 TraesCS2A01G018800 chr2D 95.298 3233 113 17 526 3748 9687295 9684092 0.000000e+00 5092.0
6 TraesCS2A01G018800 chr2D 79.091 880 166 12 1123 1987 10750643 10749767 1.160000e-164 590.0
7 TraesCS2A01G018800 chr2B 92.666 3218 177 28 543 3746 13022732 13019560 0.000000e+00 4580.0
8 TraesCS2A01G018800 chr2B 79.881 840 147 15 1123 1945 14952375 14951541 2.490000e-166 595.0
9 TraesCS2A01G018800 chrUn 79.881 840 147 15 1123 1945 303367664 303368498 2.490000e-166 595.0
10 TraesCS2A01G018800 chrUn 79.881 840 147 15 1123 1945 303430039 303430873 2.490000e-166 595.0
11 TraesCS2A01G018800 chr5A 90.343 466 28 2 68 518 59888211 59887748 2.490000e-166 595.0
12 TraesCS2A01G018800 chr5A 98.611 72 1 0 1 72 59888759 59888688 1.090000e-25 128.0
13 TraesCS2A01G018800 chr5D 88.028 142 16 1 253 393 269987156 269987015 2.320000e-37 167.0
14 TraesCS2A01G018800 chr5D 88.506 87 9 1 3436 3522 55535357 55535272 1.840000e-18 104.0
15 TraesCS2A01G018800 chr3A 91.765 85 6 1 3437 3521 692469279 692469362 2.370000e-22 117.0
16 TraesCS2A01G018800 chr3A 85.057 87 8 4 3437 3521 731891263 731891346 2.400000e-12 84.2
17 TraesCS2A01G018800 chr3A 89.362 47 5 0 472 518 497925108 497925062 4.040000e-05 60.2
18 TraesCS2A01G018800 chr3A 100.000 29 0 0 491 519 347534471 347534443 2.000000e-03 54.7
19 TraesCS2A01G018800 chr4B 89.412 85 8 1 3437 3521 119340235 119340152 5.120000e-19 106.0
20 TraesCS2A01G018800 chr4B 91.228 57 5 0 65 121 193408665 193408721 1.120000e-10 78.7
21 TraesCS2A01G018800 chr3D 87.912 91 9 2 3436 3526 296034500 296034412 5.120000e-19 106.0
22 TraesCS2A01G018800 chr7A 88.506 87 8 2 3436 3521 688368130 688368215 1.840000e-18 104.0
23 TraesCS2A01G018800 chr6A 84.404 109 11 5 416 521 537708617 537708722 6.620000e-18 102.0
24 TraesCS2A01G018800 chr6B 86.585 82 10 1 3441 3521 85955626 85955707 5.160000e-14 89.8
25 TraesCS2A01G018800 chr3B 84.444 90 13 1 36 125 260340051 260339963 1.850000e-13 87.9
26 TraesCS2A01G018800 chr3B 87.273 55 6 1 468 521 615471052 615471106 1.120000e-05 62.1
27 TraesCS2A01G018800 chr7B 84.146 82 11 2 3441 3521 715269715 715269635 1.120000e-10 78.7
28 TraesCS2A01G018800 chr5B 86.441 59 6 2 462 518 108828842 108828784 3.130000e-06 63.9
29 TraesCS2A01G018800 chr7D 100.000 30 0 0 492 521 87185969 87185940 5.230000e-04 56.5
30 TraesCS2A01G018800 chr1D 87.500 48 5 1 472 518 319565282 319565329 2.000000e-03 54.7
31 TraesCS2A01G018800 chr4A 100.000 28 0 0 491 518 521912919 521912892 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G018800 chr2A 8754966 8758713 3747 True 6922.0 6922 100.0000 1 3748 1 chr2A.!!$R2 3747
1 TraesCS2A01G018800 chr2A 3863862 3864738 876 True 651.0 651 80.4080 1123 1987 1 chr2A.!!$R1 864
2 TraesCS2A01G018800 chr2A 11024625 11025501 876 True 601.0 601 79.3180 1123 1987 1 chr2A.!!$R3 864
3 TraesCS2A01G018800 chr2A 11308048 11309669 1621 True 582.5 616 81.0785 1123 2758 2 chr2A.!!$R4 1635
4 TraesCS2A01G018800 chr2D 9684092 9687295 3203 True 5092.0 5092 95.2980 526 3748 1 chr2D.!!$R1 3222
5 TraesCS2A01G018800 chr2D 10749767 10750643 876 True 590.0 590 79.0910 1123 1987 1 chr2D.!!$R2 864
6 TraesCS2A01G018800 chr2B 13019560 13022732 3172 True 4580.0 4580 92.6660 543 3746 1 chr2B.!!$R1 3203
7 TraesCS2A01G018800 chr2B 14951541 14952375 834 True 595.0 595 79.8810 1123 1945 1 chr2B.!!$R2 822
8 TraesCS2A01G018800 chrUn 303367664 303368498 834 False 595.0 595 79.8810 1123 1945 1 chrUn.!!$F1 822
9 TraesCS2A01G018800 chrUn 303430039 303430873 834 False 595.0 595 79.8810 1123 1945 1 chrUn.!!$F2 822
10 TraesCS2A01G018800 chr5A 59887748 59888759 1011 True 361.5 595 94.4770 1 518 2 chr5A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.031585 GTGGTGGAAAAAGGAACGGC 59.968 55.0 0.00 0.00 0.00 5.68 F
358 359 0.035725 GGTAGGGTTGTGGGTAGTGC 60.036 60.0 0.00 0.00 0.00 4.40 F
1280 1359 0.179111 ATTCATGTCGTCGCCGTGAT 60.179 50.0 0.00 0.00 35.01 3.06 F
1406 1485 0.976641 ATCGTGACACCACATGGAGT 59.023 50.0 4.53 2.19 43.34 3.85 F
1752 1990 1.187087 CCGACTACTTCCCAGCTCTT 58.813 55.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1359 0.250234 GCATGCTATCTCCGGGCATA 59.750 55.000 11.37 4.28 43.62 3.14 R
1453 1679 0.674895 AGTTTCTGCTCCATGGACGC 60.675 55.000 22.16 22.16 0.00 5.19 R
2414 2715 0.037734 GGTTCCGACCAAGTCCCATT 59.962 55.000 0.00 0.00 45.77 3.16 R
2697 2998 1.812571 CCGTGGTTTAGCTTGCAGAAT 59.187 47.619 0.00 0.00 0.00 2.40 R
3412 3729 1.800805 CAAGCGAAAGAAGAGAGCCA 58.199 50.000 0.00 0.00 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.431626 CCGTGATAGTGCCATGGTAAGAA 60.432 47.826 14.67 0.00 36.26 2.52
74 75 4.680708 CGTGATAGTGCCATGGTAAGAACT 60.681 45.833 14.67 11.65 0.00 3.01
75 76 4.811557 GTGATAGTGCCATGGTAAGAACTC 59.188 45.833 14.67 3.22 0.00 3.01
76 77 4.469586 TGATAGTGCCATGGTAAGAACTCA 59.530 41.667 14.67 5.76 0.00 3.41
77 78 3.340814 AGTGCCATGGTAAGAACTCAG 57.659 47.619 14.67 0.00 0.00 3.35
78 79 2.639839 AGTGCCATGGTAAGAACTCAGT 59.360 45.455 14.67 0.00 0.00 3.41
79 80 2.744202 GTGCCATGGTAAGAACTCAGTG 59.256 50.000 14.67 0.00 0.00 3.66
80 81 2.290260 TGCCATGGTAAGAACTCAGTGG 60.290 50.000 14.67 0.00 0.00 4.00
81 82 2.290323 GCCATGGTAAGAACTCAGTGGT 60.290 50.000 14.67 0.00 0.00 4.16
82 83 3.338249 CCATGGTAAGAACTCAGTGGTG 58.662 50.000 2.57 0.00 0.00 4.17
83 84 3.338249 CATGGTAAGAACTCAGTGGTGG 58.662 50.000 0.00 0.00 0.00 4.61
84 85 2.684943 TGGTAAGAACTCAGTGGTGGA 58.315 47.619 0.00 0.00 0.00 4.02
86 87 3.456644 TGGTAAGAACTCAGTGGTGGAAA 59.543 43.478 0.00 0.00 0.00 3.13
87 88 4.080243 TGGTAAGAACTCAGTGGTGGAAAA 60.080 41.667 0.00 0.00 0.00 2.29
88 89 4.885325 GGTAAGAACTCAGTGGTGGAAAAA 59.115 41.667 0.00 0.00 0.00 1.94
89 90 5.008712 GGTAAGAACTCAGTGGTGGAAAAAG 59.991 44.000 0.00 0.00 0.00 2.27
90 91 3.555966 AGAACTCAGTGGTGGAAAAAGG 58.444 45.455 0.00 0.00 0.00 3.11
93 94 3.288092 ACTCAGTGGTGGAAAAAGGAAC 58.712 45.455 0.00 0.00 0.00 3.62
94 95 2.290641 CTCAGTGGTGGAAAAAGGAACG 59.709 50.000 0.00 0.00 0.00 3.95
95 96 1.336755 CAGTGGTGGAAAAAGGAACGG 59.663 52.381 0.00 0.00 0.00 4.44
96 97 0.031585 GTGGTGGAAAAAGGAACGGC 59.968 55.000 0.00 0.00 0.00 5.68
98 99 1.110518 GGTGGAAAAAGGAACGGCCA 61.111 55.000 2.24 0.00 40.02 5.36
101 102 1.284715 GAAAAAGGAACGGCCACGG 59.715 57.895 2.24 0.00 46.48 4.94
102 103 2.137425 GAAAAAGGAACGGCCACGGG 62.137 60.000 2.24 0.00 46.48 5.28
103 104 2.914756 AAAAAGGAACGGCCACGGGT 62.915 55.000 2.24 0.00 46.48 5.28
104 105 2.914756 AAAAGGAACGGCCACGGGTT 62.915 55.000 2.24 0.00 46.48 4.11
105 106 4.636435 AGGAACGGCCACGGGTTG 62.636 66.667 2.24 0.00 46.48 3.77
114 115 2.750350 CACGGGTTGCTCCTCCTT 59.250 61.111 0.00 0.00 36.25 3.36
115 116 1.672356 CACGGGTTGCTCCTCCTTG 60.672 63.158 0.00 0.00 36.25 3.61
116 117 2.147387 ACGGGTTGCTCCTCCTTGT 61.147 57.895 0.00 0.00 36.25 3.16
117 118 1.672356 CGGGTTGCTCCTCCTTGTG 60.672 63.158 0.00 0.00 36.25 3.33
118 119 1.973812 GGGTTGCTCCTCCTTGTGC 60.974 63.158 0.00 0.00 36.25 4.57
119 120 2.328099 GGTTGCTCCTCCTTGTGCG 61.328 63.158 0.00 0.00 0.00 5.34
120 121 2.032528 TTGCTCCTCCTTGTGCGG 59.967 61.111 0.00 0.00 0.00 5.69
121 122 4.704833 TGCTCCTCCTTGTGCGGC 62.705 66.667 0.00 0.00 0.00 6.53
122 123 4.704833 GCTCCTCCTTGTGCGGCA 62.705 66.667 0.00 0.00 0.00 5.69
123 124 2.435586 CTCCTCCTTGTGCGGCAG 60.436 66.667 1.18 0.00 0.00 4.85
124 125 4.704833 TCCTCCTTGTGCGGCAGC 62.705 66.667 1.18 0.31 45.41 5.25
135 136 3.247033 GCGGCAGCATCTTTGAATC 57.753 52.632 3.18 0.00 44.35 2.52
136 137 0.590732 GCGGCAGCATCTTTGAATCG 60.591 55.000 3.18 0.00 44.35 3.34
137 138 1.009078 CGGCAGCATCTTTGAATCGA 58.991 50.000 0.00 0.00 0.00 3.59
138 139 1.398041 CGGCAGCATCTTTGAATCGAA 59.602 47.619 0.00 0.00 0.00 3.71
139 140 2.538333 CGGCAGCATCTTTGAATCGAAG 60.538 50.000 3.84 3.84 0.00 3.79
140 141 2.448219 GCAGCATCTTTGAATCGAAGC 58.552 47.619 5.36 0.00 0.00 3.86
141 142 2.097142 GCAGCATCTTTGAATCGAAGCT 59.903 45.455 5.36 0.00 34.87 3.74
144 145 5.505324 GCAGCATCTTTGAATCGAAGCTAAT 60.505 40.000 5.36 0.00 33.03 1.73
145 146 6.134730 CAGCATCTTTGAATCGAAGCTAATC 58.865 40.000 5.36 0.00 33.03 1.75
146 147 6.018098 CAGCATCTTTGAATCGAAGCTAATCT 60.018 38.462 5.36 0.00 33.03 2.40
147 148 6.018098 AGCATCTTTGAATCGAAGCTAATCTG 60.018 38.462 5.36 0.00 33.03 2.90
148 149 6.238320 GCATCTTTGAATCGAAGCTAATCTGT 60.238 38.462 5.36 0.00 0.00 3.41
149 150 6.893958 TCTTTGAATCGAAGCTAATCTGTC 57.106 37.500 5.36 0.00 0.00 3.51
150 151 5.516696 TCTTTGAATCGAAGCTAATCTGTCG 59.483 40.000 5.36 0.00 34.85 4.35
152 153 3.130516 TGAATCGAAGCTAATCTGTCGGT 59.869 43.478 3.60 0.00 34.32 4.69
153 154 2.561733 TCGAAGCTAATCTGTCGGTG 57.438 50.000 3.60 0.00 34.32 4.94
154 155 1.134367 TCGAAGCTAATCTGTCGGTGG 59.866 52.381 3.60 0.00 34.32 4.61
156 157 2.223829 CGAAGCTAATCTGTCGGTGGAT 60.224 50.000 0.00 0.00 0.00 3.41
157 158 3.385577 GAAGCTAATCTGTCGGTGGATC 58.614 50.000 0.00 0.00 0.00 3.36
158 159 1.689273 AGCTAATCTGTCGGTGGATCC 59.311 52.381 4.20 4.20 0.00 3.36
161 162 0.620410 AATCTGTCGGTGGATCCCCA 60.620 55.000 9.90 0.00 40.95 4.96
162 163 0.400525 ATCTGTCGGTGGATCCCCAT 60.401 55.000 9.90 0.00 45.68 4.00
163 164 1.048724 TCTGTCGGTGGATCCCCATC 61.049 60.000 9.90 6.53 45.68 3.51
165 166 1.048724 TGTCGGTGGATCCCCATCTC 61.049 60.000 9.90 2.06 45.68 2.75
166 167 0.760945 GTCGGTGGATCCCCATCTCT 60.761 60.000 9.90 0.00 45.68 3.10
167 168 0.760567 TCGGTGGATCCCCATCTCTG 60.761 60.000 9.90 0.00 45.68 3.35
169 170 1.059006 GGTGGATCCCCATCTCTGCT 61.059 60.000 9.90 0.00 45.68 4.24
170 171 1.722034 GTGGATCCCCATCTCTGCTA 58.278 55.000 9.90 0.00 45.68 3.49
171 172 2.264455 GTGGATCCCCATCTCTGCTAT 58.736 52.381 9.90 0.00 45.68 2.97
172 173 2.027377 GTGGATCCCCATCTCTGCTATG 60.027 54.545 9.90 0.00 45.68 2.23
173 174 1.065564 GGATCCCCATCTCTGCTATGC 60.066 57.143 0.00 0.00 0.00 3.14
174 175 1.907936 GATCCCCATCTCTGCTATGCT 59.092 52.381 0.00 0.00 0.00 3.79
175 176 1.346062 TCCCCATCTCTGCTATGCTC 58.654 55.000 0.00 0.00 0.00 4.26
176 177 0.324285 CCCCATCTCTGCTATGCTCC 59.676 60.000 0.00 0.00 0.00 4.70
177 178 0.037512 CCCATCTCTGCTATGCTCCG 60.038 60.000 0.00 0.00 0.00 4.63
178 179 0.037512 CCATCTCTGCTATGCTCCGG 60.038 60.000 0.00 0.00 0.00 5.14
179 180 0.037512 CATCTCTGCTATGCTCCGGG 60.038 60.000 0.00 0.00 0.00 5.73
180 181 0.470833 ATCTCTGCTATGCTCCGGGT 60.471 55.000 0.00 0.00 0.00 5.28
181 182 1.109920 TCTCTGCTATGCTCCGGGTC 61.110 60.000 0.00 0.00 0.00 4.46
182 183 1.075970 TCTGCTATGCTCCGGGTCT 60.076 57.895 0.00 0.00 0.00 3.85
183 184 1.109920 TCTGCTATGCTCCGGGTCTC 61.110 60.000 0.00 0.00 0.00 3.36
184 185 1.075970 TGCTATGCTCCGGGTCTCT 60.076 57.895 0.00 0.00 0.00 3.10
185 186 0.687757 TGCTATGCTCCGGGTCTCTT 60.688 55.000 0.00 0.00 0.00 2.85
186 187 0.466124 GCTATGCTCCGGGTCTCTTT 59.534 55.000 0.00 0.00 0.00 2.52
187 188 1.134371 GCTATGCTCCGGGTCTCTTTT 60.134 52.381 0.00 0.00 0.00 2.27
188 189 2.681097 GCTATGCTCCGGGTCTCTTTTT 60.681 50.000 0.00 0.00 0.00 1.94
218 219 2.159179 AAAAGGGCAACTGAAGGTGT 57.841 45.000 0.00 0.00 0.00 4.16
219 220 1.402787 AAAGGGCAACTGAAGGTGTG 58.597 50.000 0.00 0.00 0.00 3.82
220 221 0.468029 AAGGGCAACTGAAGGTGTGG 60.468 55.000 0.00 0.00 0.00 4.17
221 222 1.150536 GGGCAACTGAAGGTGTGGA 59.849 57.895 0.00 0.00 0.00 4.02
222 223 1.172812 GGGCAACTGAAGGTGTGGAC 61.173 60.000 0.00 0.00 0.00 4.02
223 224 1.507141 GGCAACTGAAGGTGTGGACG 61.507 60.000 0.00 0.00 0.00 4.79
224 225 1.507141 GCAACTGAAGGTGTGGACGG 61.507 60.000 0.00 0.00 0.00 4.79
225 226 0.105964 CAACTGAAGGTGTGGACGGA 59.894 55.000 0.00 0.00 0.00 4.69
226 227 0.106149 AACTGAAGGTGTGGACGGAC 59.894 55.000 0.00 0.00 0.00 4.79
227 228 1.372997 CTGAAGGTGTGGACGGACG 60.373 63.158 0.00 0.00 0.00 4.79
228 229 2.048503 GAAGGTGTGGACGGACGG 60.049 66.667 0.00 0.00 0.00 4.79
229 230 3.584868 GAAGGTGTGGACGGACGGG 62.585 68.421 0.00 0.00 0.00 5.28
230 231 4.928140 AGGTGTGGACGGACGGGT 62.928 66.667 0.00 0.00 0.00 5.28
231 232 2.990967 GGTGTGGACGGACGGGTA 60.991 66.667 0.00 0.00 0.00 3.69
232 233 2.570181 GTGTGGACGGACGGGTAG 59.430 66.667 0.00 0.00 0.00 3.18
233 234 2.677524 TGTGGACGGACGGGTAGG 60.678 66.667 0.00 0.00 0.00 3.18
234 235 3.455469 GTGGACGGACGGGTAGGG 61.455 72.222 0.00 0.00 0.00 3.53
235 236 4.764771 TGGACGGACGGGTAGGGG 62.765 72.222 0.00 0.00 0.00 4.79
236 237 4.766632 GGACGGACGGGTAGGGGT 62.767 72.222 0.00 0.00 0.00 4.95
237 238 2.275418 GACGGACGGGTAGGGGTA 59.725 66.667 0.00 0.00 0.00 3.69
238 239 1.152673 GACGGACGGGTAGGGGTAT 60.153 63.158 0.00 0.00 0.00 2.73
239 240 1.456331 ACGGACGGGTAGGGGTATG 60.456 63.158 0.00 0.00 0.00 2.39
240 241 1.152694 CGGACGGGTAGGGGTATGA 60.153 63.158 0.00 0.00 0.00 2.15
241 242 1.177256 CGGACGGGTAGGGGTATGAG 61.177 65.000 0.00 0.00 0.00 2.90
242 243 1.470165 GGACGGGTAGGGGTATGAGC 61.470 65.000 0.00 0.00 0.00 4.26
243 244 0.757935 GACGGGTAGGGGTATGAGCA 60.758 60.000 0.00 0.00 0.00 4.26
244 245 1.047034 ACGGGTAGGGGTATGAGCAC 61.047 60.000 0.00 0.00 0.00 4.40
245 246 1.755393 CGGGTAGGGGTATGAGCACC 61.755 65.000 0.00 0.00 37.91 5.01
246 247 1.746517 GGTAGGGGTATGAGCACCG 59.253 63.158 0.00 0.00 39.69 4.94
249 250 3.792736 GGGGTATGAGCACCGCCA 61.793 66.667 0.00 0.00 43.82 5.69
250 251 2.203070 GGGTATGAGCACCGCCAG 60.203 66.667 0.00 0.00 39.69 4.85
251 252 2.203070 GGTATGAGCACCGCCAGG 60.203 66.667 0.00 0.00 45.13 4.45
252 253 2.203070 GTATGAGCACCGCCAGGG 60.203 66.667 0.00 0.00 43.47 4.45
304 305 4.228097 GCGCGCGGTCGAGTAGTA 62.228 66.667 33.06 0.00 37.81 1.82
305 306 2.053291 CGCGCGGTCGAGTAGTAG 60.053 66.667 24.84 0.00 38.10 2.57
306 307 2.327244 GCGCGGTCGAGTAGTAGG 59.673 66.667 8.83 0.00 38.10 3.18
307 308 2.176273 GCGCGGTCGAGTAGTAGGA 61.176 63.158 8.83 0.00 38.10 2.94
308 309 1.933005 CGCGGTCGAGTAGTAGGAG 59.067 63.158 0.00 0.00 38.10 3.69
309 310 0.809241 CGCGGTCGAGTAGTAGGAGT 60.809 60.000 0.00 0.00 38.10 3.85
310 311 0.656785 GCGGTCGAGTAGTAGGAGTG 59.343 60.000 0.00 0.00 0.00 3.51
311 312 1.297664 CGGTCGAGTAGTAGGAGTGG 58.702 60.000 0.00 0.00 0.00 4.00
312 313 1.023502 GGTCGAGTAGTAGGAGTGGC 58.976 60.000 0.00 0.00 0.00 5.01
313 314 0.656785 GTCGAGTAGTAGGAGTGGCG 59.343 60.000 0.00 0.00 0.00 5.69
314 315 0.463295 TCGAGTAGTAGGAGTGGCGG 60.463 60.000 0.00 0.00 0.00 6.13
315 316 0.747283 CGAGTAGTAGGAGTGGCGGT 60.747 60.000 0.00 0.00 0.00 5.68
316 317 0.739561 GAGTAGTAGGAGTGGCGGTG 59.260 60.000 0.00 0.00 0.00 4.94
317 318 1.141234 GTAGTAGGAGTGGCGGTGC 59.859 63.158 0.00 0.00 0.00 5.01
318 319 2.412323 TAGTAGGAGTGGCGGTGCG 61.412 63.158 0.00 0.00 0.00 5.34
329 330 4.680237 CGGTGCGCTGGAGGTTGA 62.680 66.667 9.73 0.00 0.00 3.18
330 331 2.281484 GGTGCGCTGGAGGTTGAA 60.281 61.111 9.73 0.00 0.00 2.69
331 332 2.328099 GGTGCGCTGGAGGTTGAAG 61.328 63.158 9.73 0.00 0.00 3.02
332 333 1.301716 GTGCGCTGGAGGTTGAAGA 60.302 57.895 9.73 0.00 0.00 2.87
333 334 0.674895 GTGCGCTGGAGGTTGAAGAT 60.675 55.000 9.73 0.00 0.00 2.40
334 335 0.674581 TGCGCTGGAGGTTGAAGATG 60.675 55.000 9.73 0.00 0.00 2.90
335 336 1.372087 GCGCTGGAGGTTGAAGATGG 61.372 60.000 0.00 0.00 0.00 3.51
336 337 1.372087 CGCTGGAGGTTGAAGATGGC 61.372 60.000 0.00 0.00 0.00 4.40
337 338 1.372087 GCTGGAGGTTGAAGATGGCG 61.372 60.000 0.00 0.00 0.00 5.69
338 339 0.250234 CTGGAGGTTGAAGATGGCGA 59.750 55.000 0.00 0.00 0.00 5.54
339 340 0.250234 TGGAGGTTGAAGATGGCGAG 59.750 55.000 0.00 0.00 0.00 5.03
340 341 0.462759 GGAGGTTGAAGATGGCGAGG 60.463 60.000 0.00 0.00 0.00 4.63
341 342 0.250513 GAGGTTGAAGATGGCGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
342 343 1.480954 GAGGTTGAAGATGGCGAGGTA 59.519 52.381 0.00 0.00 0.00 3.08
343 344 1.482593 AGGTTGAAGATGGCGAGGTAG 59.517 52.381 0.00 0.00 0.00 3.18
344 345 1.473434 GGTTGAAGATGGCGAGGTAGG 60.473 57.143 0.00 0.00 0.00 3.18
345 346 0.830648 TTGAAGATGGCGAGGTAGGG 59.169 55.000 0.00 0.00 0.00 3.53
346 347 0.325296 TGAAGATGGCGAGGTAGGGT 60.325 55.000 0.00 0.00 0.00 4.34
347 348 0.831307 GAAGATGGCGAGGTAGGGTT 59.169 55.000 0.00 0.00 0.00 4.11
348 349 0.541863 AAGATGGCGAGGTAGGGTTG 59.458 55.000 0.00 0.00 0.00 3.77
349 350 0.617820 AGATGGCGAGGTAGGGTTGT 60.618 55.000 0.00 0.00 0.00 3.32
350 351 0.462047 GATGGCGAGGTAGGGTTGTG 60.462 60.000 0.00 0.00 0.00 3.33
351 352 1.910580 ATGGCGAGGTAGGGTTGTGG 61.911 60.000 0.00 0.00 0.00 4.17
352 353 2.267961 GCGAGGTAGGGTTGTGGG 59.732 66.667 0.00 0.00 0.00 4.61
353 354 2.590114 GCGAGGTAGGGTTGTGGGT 61.590 63.158 0.00 0.00 0.00 4.51
354 355 1.259840 GCGAGGTAGGGTTGTGGGTA 61.260 60.000 0.00 0.00 0.00 3.69
355 356 0.822164 CGAGGTAGGGTTGTGGGTAG 59.178 60.000 0.00 0.00 0.00 3.18
356 357 1.894093 CGAGGTAGGGTTGTGGGTAGT 60.894 57.143 0.00 0.00 0.00 2.73
357 358 1.553704 GAGGTAGGGTTGTGGGTAGTG 59.446 57.143 0.00 0.00 0.00 2.74
358 359 0.035725 GGTAGGGTTGTGGGTAGTGC 60.036 60.000 0.00 0.00 0.00 4.40
359 360 0.390735 GTAGGGTTGTGGGTAGTGCG 60.391 60.000 0.00 0.00 0.00 5.34
360 361 2.175035 TAGGGTTGTGGGTAGTGCGC 62.175 60.000 0.00 0.00 0.00 6.09
361 362 2.281208 GGTTGTGGGTAGTGCGCA 60.281 61.111 5.66 5.66 37.73 6.09
375 376 2.593436 CGCACGGGTGGGTTCTTT 60.593 61.111 7.62 0.00 38.53 2.52
376 377 2.190841 CGCACGGGTGGGTTCTTTT 61.191 57.895 7.62 0.00 38.53 2.27
377 378 1.730451 CGCACGGGTGGGTTCTTTTT 61.730 55.000 7.62 0.00 38.53 1.94
401 402 6.801367 TTTTCTTTTCTATCGGTCGTATCG 57.199 37.500 0.00 0.00 0.00 2.92
402 403 4.478843 TCTTTTCTATCGGTCGTATCGG 57.521 45.455 0.00 0.00 0.00 4.18
403 404 3.879295 TCTTTTCTATCGGTCGTATCGGT 59.121 43.478 0.00 0.00 0.00 4.69
404 405 4.336433 TCTTTTCTATCGGTCGTATCGGTT 59.664 41.667 0.00 0.00 0.00 4.44
405 406 3.885484 TTCTATCGGTCGTATCGGTTC 57.115 47.619 0.00 0.00 0.00 3.62
406 407 2.837498 TCTATCGGTCGTATCGGTTCA 58.163 47.619 0.00 0.00 0.00 3.18
407 408 2.804527 TCTATCGGTCGTATCGGTTCAG 59.195 50.000 0.00 0.00 0.00 3.02
408 409 0.666913 ATCGGTCGTATCGGTTCAGG 59.333 55.000 0.00 0.00 0.00 3.86
409 410 0.392863 TCGGTCGTATCGGTTCAGGA 60.393 55.000 0.00 0.00 0.00 3.86
410 411 0.666913 CGGTCGTATCGGTTCAGGAT 59.333 55.000 0.00 0.00 0.00 3.24
411 412 1.334779 CGGTCGTATCGGTTCAGGATC 60.335 57.143 0.00 0.00 0.00 3.36
412 413 1.679680 GGTCGTATCGGTTCAGGATCA 59.320 52.381 0.00 0.00 0.00 2.92
413 414 2.296471 GGTCGTATCGGTTCAGGATCAT 59.704 50.000 0.00 0.00 0.00 2.45
414 415 3.243771 GGTCGTATCGGTTCAGGATCATT 60.244 47.826 0.00 0.00 0.00 2.57
415 416 4.022589 GGTCGTATCGGTTCAGGATCATTA 60.023 45.833 0.00 0.00 0.00 1.90
416 417 5.154932 GTCGTATCGGTTCAGGATCATTAG 58.845 45.833 0.00 0.00 0.00 1.73
417 418 4.217767 TCGTATCGGTTCAGGATCATTAGG 59.782 45.833 0.00 0.00 0.00 2.69
418 419 4.217767 CGTATCGGTTCAGGATCATTAGGA 59.782 45.833 0.00 0.00 0.00 2.94
419 420 4.608948 ATCGGTTCAGGATCATTAGGAC 57.391 45.455 0.00 0.00 0.00 3.85
420 421 3.643237 TCGGTTCAGGATCATTAGGACT 58.357 45.455 0.00 0.00 0.00 3.85
421 422 4.800023 TCGGTTCAGGATCATTAGGACTA 58.200 43.478 0.00 0.00 0.00 2.59
422 423 4.583489 TCGGTTCAGGATCATTAGGACTAC 59.417 45.833 0.00 0.00 0.00 2.73
423 424 4.556898 CGGTTCAGGATCATTAGGACTACG 60.557 50.000 0.00 0.00 0.00 3.51
424 425 4.262079 GGTTCAGGATCATTAGGACTACGG 60.262 50.000 0.00 0.00 0.00 4.02
425 426 3.497332 TCAGGATCATTAGGACTACGGG 58.503 50.000 0.00 0.00 0.00 5.28
426 427 3.117246 TCAGGATCATTAGGACTACGGGT 60.117 47.826 0.00 0.00 0.00 5.28
427 428 3.641906 CAGGATCATTAGGACTACGGGTT 59.358 47.826 0.00 0.00 0.00 4.11
428 429 3.896272 AGGATCATTAGGACTACGGGTTC 59.104 47.826 0.00 0.00 0.00 3.62
429 430 3.640029 GGATCATTAGGACTACGGGTTCA 59.360 47.826 0.00 0.00 0.00 3.18
430 431 4.100498 GGATCATTAGGACTACGGGTTCAA 59.900 45.833 0.00 0.00 0.00 2.69
431 432 5.221661 GGATCATTAGGACTACGGGTTCAAT 60.222 44.000 0.00 0.00 0.00 2.57
432 433 5.687166 TCATTAGGACTACGGGTTCAATT 57.313 39.130 0.00 0.00 0.00 2.32
433 434 5.424757 TCATTAGGACTACGGGTTCAATTG 58.575 41.667 0.00 0.00 0.00 2.32
434 435 4.895668 TTAGGACTACGGGTTCAATTGT 57.104 40.909 5.13 0.00 0.00 2.71
435 436 3.329929 AGGACTACGGGTTCAATTGTC 57.670 47.619 5.13 0.32 0.00 3.18
436 437 2.635915 AGGACTACGGGTTCAATTGTCA 59.364 45.455 5.13 0.00 0.00 3.58
437 438 3.000727 GGACTACGGGTTCAATTGTCAG 58.999 50.000 5.13 0.76 0.00 3.51
438 439 3.306502 GGACTACGGGTTCAATTGTCAGA 60.307 47.826 5.13 0.00 0.00 3.27
439 440 4.312443 GACTACGGGTTCAATTGTCAGAA 58.688 43.478 5.13 0.00 0.00 3.02
440 441 4.710324 ACTACGGGTTCAATTGTCAGAAA 58.290 39.130 5.13 0.00 0.00 2.52
441 442 5.127491 ACTACGGGTTCAATTGTCAGAAAA 58.873 37.500 5.13 0.00 0.00 2.29
442 443 5.768164 ACTACGGGTTCAATTGTCAGAAAAT 59.232 36.000 5.13 0.00 0.00 1.82
443 444 6.938030 ACTACGGGTTCAATTGTCAGAAAATA 59.062 34.615 5.13 0.00 0.00 1.40
444 445 6.009115 ACGGGTTCAATTGTCAGAAAATAC 57.991 37.500 5.13 0.00 0.00 1.89
445 446 5.533154 ACGGGTTCAATTGTCAGAAAATACA 59.467 36.000 5.13 0.00 0.00 2.29
446 447 6.208599 ACGGGTTCAATTGTCAGAAAATACAT 59.791 34.615 5.13 0.00 0.00 2.29
447 448 6.527722 CGGGTTCAATTGTCAGAAAATACATG 59.472 38.462 5.13 0.00 0.00 3.21
448 449 6.813152 GGGTTCAATTGTCAGAAAATACATGG 59.187 38.462 5.13 0.00 0.00 3.66
449 450 7.309744 GGGTTCAATTGTCAGAAAATACATGGA 60.310 37.037 5.13 0.00 0.00 3.41
450 451 7.542130 GGTTCAATTGTCAGAAAATACATGGAC 59.458 37.037 5.13 0.00 0.00 4.02
451 452 7.156876 TCAATTGTCAGAAAATACATGGACC 57.843 36.000 5.13 0.00 0.00 4.46
452 453 6.947733 TCAATTGTCAGAAAATACATGGACCT 59.052 34.615 5.13 0.00 0.00 3.85
453 454 7.451255 TCAATTGTCAGAAAATACATGGACCTT 59.549 33.333 5.13 0.00 0.00 3.50
454 455 7.781324 ATTGTCAGAAAATACATGGACCTTT 57.219 32.000 0.00 0.00 0.00 3.11
455 456 6.573664 TGTCAGAAAATACATGGACCTTTG 57.426 37.500 0.00 0.00 0.00 2.77
456 457 6.068010 TGTCAGAAAATACATGGACCTTTGT 58.932 36.000 0.00 6.02 0.00 2.83
457 458 6.016360 TGTCAGAAAATACATGGACCTTTGTG 60.016 38.462 9.99 1.50 0.00 3.33
458 459 6.016276 GTCAGAAAATACATGGACCTTTGTGT 60.016 38.462 9.89 2.20 0.00 3.72
459 460 7.174253 GTCAGAAAATACATGGACCTTTGTGTA 59.826 37.037 9.89 6.52 0.00 2.90
460 461 7.721842 TCAGAAAATACATGGACCTTTGTGTAA 59.278 33.333 9.89 0.00 31.57 2.41
461 462 8.356657 CAGAAAATACATGGACCTTTGTGTAAA 58.643 33.333 9.99 0.00 31.57 2.01
462 463 8.919145 AGAAAATACATGGACCTTTGTGTAAAA 58.081 29.630 9.99 0.00 31.57 1.52
463 464 9.535878 GAAAATACATGGACCTTTGTGTAAAAA 57.464 29.630 9.99 0.00 31.57 1.94
464 465 8.880878 AAATACATGGACCTTTGTGTAAAAAC 57.119 30.769 9.99 0.00 31.57 2.43
465 466 5.923733 ACATGGACCTTTGTGTAAAAACA 57.076 34.783 0.00 0.00 0.00 2.83
466 467 6.478512 ACATGGACCTTTGTGTAAAAACAT 57.521 33.333 0.00 0.00 0.00 2.71
467 468 6.512297 ACATGGACCTTTGTGTAAAAACATC 58.488 36.000 0.00 0.00 0.00 3.06
468 469 5.176407 TGGACCTTTGTGTAAAAACATCG 57.824 39.130 0.00 0.00 0.00 3.84
469 470 3.978855 GGACCTTTGTGTAAAAACATCGC 59.021 43.478 0.00 0.00 0.00 4.58
470 471 4.261447 GGACCTTTGTGTAAAAACATCGCT 60.261 41.667 0.00 0.00 0.00 4.93
471 472 5.049267 GGACCTTTGTGTAAAAACATCGCTA 60.049 40.000 0.00 0.00 0.00 4.26
472 473 5.754778 ACCTTTGTGTAAAAACATCGCTAC 58.245 37.500 0.00 0.00 0.00 3.58
473 474 4.843984 CCTTTGTGTAAAAACATCGCTACG 59.156 41.667 0.00 0.00 0.00 3.51
474 475 4.392619 TTGTGTAAAAACATCGCTACGG 57.607 40.909 0.00 0.00 0.00 4.02
475 476 3.391965 TGTGTAAAAACATCGCTACGGT 58.608 40.909 0.00 0.00 0.00 4.83
476 477 3.184783 TGTGTAAAAACATCGCTACGGTG 59.815 43.478 0.00 0.00 44.22 4.94
477 478 3.429543 GTGTAAAAACATCGCTACGGTGA 59.570 43.478 7.32 0.00 40.81 4.02
478 479 4.092383 GTGTAAAAACATCGCTACGGTGAT 59.908 41.667 7.32 0.00 40.81 3.06
479 480 4.327898 TGTAAAAACATCGCTACGGTGATC 59.672 41.667 7.32 0.00 40.81 2.92
480 481 1.935933 AAACATCGCTACGGTGATCC 58.064 50.000 7.32 0.00 40.81 3.36
481 482 1.112113 AACATCGCTACGGTGATCCT 58.888 50.000 7.32 0.00 40.81 3.24
482 483 0.385751 ACATCGCTACGGTGATCCTG 59.614 55.000 7.32 0.00 40.81 3.86
483 484 0.668535 CATCGCTACGGTGATCCTGA 59.331 55.000 0.00 0.00 40.81 3.86
484 485 1.067060 CATCGCTACGGTGATCCTGAA 59.933 52.381 0.00 0.00 40.81 3.02
485 486 0.738975 TCGCTACGGTGATCCTGAAG 59.261 55.000 0.00 0.00 0.00 3.02
486 487 0.738975 CGCTACGGTGATCCTGAAGA 59.261 55.000 0.00 0.00 0.00 2.87
487 488 1.534175 CGCTACGGTGATCCTGAAGAC 60.534 57.143 0.00 0.00 0.00 3.01
488 489 1.751924 GCTACGGTGATCCTGAAGACT 59.248 52.381 0.00 0.00 0.00 3.24
489 490 2.480416 GCTACGGTGATCCTGAAGACTG 60.480 54.545 0.00 0.00 0.00 3.51
490 491 1.924731 ACGGTGATCCTGAAGACTGA 58.075 50.000 0.00 0.00 0.00 3.41
491 492 2.248248 ACGGTGATCCTGAAGACTGAA 58.752 47.619 0.00 0.00 0.00 3.02
492 493 2.834549 ACGGTGATCCTGAAGACTGAAT 59.165 45.455 0.00 0.00 0.00 2.57
493 494 3.118956 ACGGTGATCCTGAAGACTGAATC 60.119 47.826 0.00 0.00 0.00 2.52
494 495 3.739519 CGGTGATCCTGAAGACTGAATCC 60.740 52.174 0.00 0.00 0.00 3.01
495 496 3.452474 GTGATCCTGAAGACTGAATCCG 58.548 50.000 0.00 0.00 0.00 4.18
496 497 3.099905 TGATCCTGAAGACTGAATCCGT 58.900 45.455 0.00 0.00 0.00 4.69
497 498 3.118992 TGATCCTGAAGACTGAATCCGTG 60.119 47.826 0.00 0.00 0.00 4.94
498 499 1.066858 TCCTGAAGACTGAATCCGTGC 60.067 52.381 0.00 0.00 0.00 5.34
499 500 1.066573 CCTGAAGACTGAATCCGTGCT 60.067 52.381 0.00 0.00 0.00 4.40
500 501 2.613977 CCTGAAGACTGAATCCGTGCTT 60.614 50.000 0.00 0.00 0.00 3.91
501 502 3.070018 CTGAAGACTGAATCCGTGCTTT 58.930 45.455 0.00 0.00 0.00 3.51
502 503 4.245660 CTGAAGACTGAATCCGTGCTTTA 58.754 43.478 0.00 0.00 0.00 1.85
503 504 4.832248 TGAAGACTGAATCCGTGCTTTAT 58.168 39.130 0.00 0.00 0.00 1.40
504 505 5.245531 TGAAGACTGAATCCGTGCTTTATT 58.754 37.500 0.00 0.00 0.00 1.40
505 506 6.403049 TGAAGACTGAATCCGTGCTTTATTA 58.597 36.000 0.00 0.00 0.00 0.98
506 507 7.047891 TGAAGACTGAATCCGTGCTTTATTAT 58.952 34.615 0.00 0.00 0.00 1.28
507 508 7.552687 TGAAGACTGAATCCGTGCTTTATTATT 59.447 33.333 0.00 0.00 0.00 1.40
508 509 8.958119 AAGACTGAATCCGTGCTTTATTATTA 57.042 30.769 0.00 0.00 0.00 0.98
509 510 8.958119 AGACTGAATCCGTGCTTTATTATTAA 57.042 30.769 0.00 0.00 0.00 1.40
510 511 9.046296 AGACTGAATCCGTGCTTTATTATTAAG 57.954 33.333 0.00 0.00 0.00 1.85
511 512 8.154649 ACTGAATCCGTGCTTTATTATTAAGG 57.845 34.615 0.00 0.00 0.00 2.69
512 513 7.990886 ACTGAATCCGTGCTTTATTATTAAGGA 59.009 33.333 0.00 0.00 0.00 3.36
513 514 8.378172 TGAATCCGTGCTTTATTATTAAGGAG 57.622 34.615 0.00 0.00 0.00 3.69
514 515 8.208224 TGAATCCGTGCTTTATTATTAAGGAGA 58.792 33.333 0.00 0.00 0.00 3.71
515 516 8.608844 AATCCGTGCTTTATTATTAAGGAGAG 57.391 34.615 0.00 0.00 0.00 3.20
516 517 7.356089 TCCGTGCTTTATTATTAAGGAGAGA 57.644 36.000 0.00 0.00 0.00 3.10
517 518 7.963532 TCCGTGCTTTATTATTAAGGAGAGAT 58.036 34.615 0.00 0.00 0.00 2.75
518 519 9.085645 TCCGTGCTTTATTATTAAGGAGAGATA 57.914 33.333 0.00 0.00 0.00 1.98
519 520 9.706691 CCGTGCTTTATTATTAAGGAGAGATAA 57.293 33.333 0.00 0.00 0.00 1.75
580 581 3.244875 ACATGGTGGCATGTTTGTCTCTA 60.245 43.478 0.00 0.00 42.56 2.43
706 710 7.064016 GTGTACTGAAAGAGTCTCCAATCAATC 59.936 40.741 0.00 0.00 37.43 2.67
827 834 0.249238 CAGTTGGAGCCTAGCTAGCG 60.249 60.000 15.74 9.76 39.88 4.26
829 836 2.058001 TTGGAGCCTAGCTAGCGCA 61.058 57.895 26.12 10.94 39.88 6.09
878 885 1.669779 CTAGATGCACCAAGAGCAAGC 59.330 52.381 0.00 0.00 46.27 4.01
885 892 0.601311 ACCAAGAGCAAGCGTGTCTC 60.601 55.000 13.29 13.29 0.00 3.36
901 908 3.743521 TGTCTCCCAACACAAATCTCAG 58.256 45.455 0.00 0.00 0.00 3.35
1199 1278 2.124901 CAAGCCGGCCGTATTCCA 60.125 61.111 26.15 0.00 0.00 3.53
1280 1359 0.179111 ATTCATGTCGTCGCCGTGAT 60.179 50.000 0.00 0.00 35.01 3.06
1350 1429 3.546714 CTCCCGTCCGGCAACCTTT 62.547 63.158 0.00 0.00 0.00 3.11
1406 1485 0.976641 ATCGTGACACCACATGGAGT 59.023 50.000 4.53 2.19 43.34 3.85
1534 1772 2.309613 ACATCAACAACACCTGCATGT 58.690 42.857 0.00 0.00 0.00 3.21
1547 1785 2.094906 CCTGCATGTCATGTCCAAACAG 60.095 50.000 14.26 10.80 39.20 3.16
1551 1789 3.346315 CATGTCATGTCCAAACAGCCTA 58.654 45.455 4.53 0.00 39.20 3.93
1752 1990 1.187087 CCGACTACTTCCCAGCTCTT 58.813 55.000 0.00 0.00 0.00 2.85
1791 2029 2.460669 GGCCATGAGAAGGTTTCCAAT 58.539 47.619 0.00 0.00 0.00 3.16
1818 2056 3.009695 TCATGGGAATACTCAACCGGTTT 59.990 43.478 19.55 6.11 0.00 3.27
2141 2442 5.682862 GGAAATGATGTATGCAACAATCGAC 59.317 40.000 0.00 0.00 42.70 4.20
2159 2460 2.414559 CGACAACCCATCAAATGCTGTC 60.415 50.000 0.00 0.00 33.34 3.51
2414 2715 2.722094 AGCCATGTCATTTTAAGCCGA 58.278 42.857 0.00 0.00 0.00 5.54
2516 2817 1.274728 CTCCTCAGTGAACCAGGACTG 59.725 57.143 0.00 0.00 40.89 3.51
2697 2998 0.840288 TGCCTTAGCTGAACCCCTGA 60.840 55.000 0.00 0.00 40.80 3.86
2833 3138 2.048127 GTCCTCAGTGGTCGTGCC 60.048 66.667 0.00 0.00 37.07 5.01
2844 3149 1.588082 GTCGTGCCTTCCTCGGTTA 59.412 57.895 0.00 0.00 0.00 2.85
2848 3153 1.404986 CGTGCCTTCCTCGGTTATTCA 60.405 52.381 0.00 0.00 0.00 2.57
2879 3189 2.132762 GGGAACAACGTGTGTCTGTAG 58.867 52.381 0.00 0.00 40.60 2.74
2922 3232 3.658757 ATGTAATGTGTGTTGTTGGGC 57.341 42.857 0.00 0.00 0.00 5.36
2951 3261 0.682532 TGTTTGTGTGGGCAGAAGCA 60.683 50.000 0.00 0.00 44.61 3.91
3115 3429 3.829886 ATTACAATGTGACAACCAGCG 57.170 42.857 0.00 0.00 0.00 5.18
3122 3436 2.147958 TGTGACAACCAGCGGAATAAC 58.852 47.619 1.50 0.00 0.00 1.89
3312 3629 6.716934 AGAAGGACACACATATACTGGTAG 57.283 41.667 0.00 0.00 0.00 3.18
3412 3729 5.187772 TCAGTATTGTACATGGTGCTCTTCT 59.812 40.000 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.524862 CAACACATGCTGCTTCTCCC 59.475 55.000 0.00 0.00 0.00 4.30
72 73 3.288092 GTTCCTTTTTCCACCACTGAGT 58.712 45.455 0.00 0.00 0.00 3.41
74 75 2.294074 CGTTCCTTTTTCCACCACTGA 58.706 47.619 0.00 0.00 0.00 3.41
75 76 1.336755 CCGTTCCTTTTTCCACCACTG 59.663 52.381 0.00 0.00 0.00 3.66
76 77 1.687563 CCGTTCCTTTTTCCACCACT 58.312 50.000 0.00 0.00 0.00 4.00
77 78 0.031585 GCCGTTCCTTTTTCCACCAC 59.968 55.000 0.00 0.00 0.00 4.16
78 79 1.110518 GGCCGTTCCTTTTTCCACCA 61.111 55.000 0.00 0.00 0.00 4.17
79 80 1.110518 TGGCCGTTCCTTTTTCCACC 61.111 55.000 0.00 0.00 35.26 4.61
80 81 0.031585 GTGGCCGTTCCTTTTTCCAC 59.968 55.000 0.00 0.00 37.42 4.02
81 82 1.448922 CGTGGCCGTTCCTTTTTCCA 61.449 55.000 0.00 0.00 35.26 3.53
82 83 1.284715 CGTGGCCGTTCCTTTTTCC 59.715 57.895 0.00 0.00 35.26 3.13
83 84 1.284715 CCGTGGCCGTTCCTTTTTC 59.715 57.895 0.00 0.00 35.26 2.29
84 85 2.197605 CCCGTGGCCGTTCCTTTTT 61.198 57.895 0.00 0.00 35.26 1.94
86 87 3.424780 AACCCGTGGCCGTTCCTTT 62.425 57.895 0.00 0.00 35.26 3.11
87 88 3.881104 AACCCGTGGCCGTTCCTT 61.881 61.111 0.00 0.00 35.26 3.36
88 89 4.636435 CAACCCGTGGCCGTTCCT 62.636 66.667 0.00 0.00 35.26 3.36
96 97 2.895424 AAGGAGGAGCAACCCGTGG 61.895 63.158 0.00 0.00 40.05 4.94
98 99 2.147387 ACAAGGAGGAGCAACCCGT 61.147 57.895 0.00 0.00 40.05 5.28
100 101 1.973812 GCACAAGGAGGAGCAACCC 60.974 63.158 0.00 0.00 40.05 4.11
101 102 2.328099 CGCACAAGGAGGAGCAACC 61.328 63.158 0.00 0.00 39.35 3.77
102 103 2.328099 CCGCACAAGGAGGAGCAAC 61.328 63.158 0.00 0.00 39.08 4.17
103 104 2.032528 CCGCACAAGGAGGAGCAA 59.967 61.111 0.00 0.00 39.08 3.91
104 105 4.704833 GCCGCACAAGGAGGAGCA 62.705 66.667 0.00 0.00 39.08 4.26
105 106 4.704833 TGCCGCACAAGGAGGAGC 62.705 66.667 0.00 0.00 39.08 4.70
117 118 0.590732 CGATTCAAAGATGCTGCCGC 60.591 55.000 0.00 0.00 0.00 6.53
118 119 1.009078 TCGATTCAAAGATGCTGCCG 58.991 50.000 0.00 0.00 0.00 5.69
119 120 2.793933 GCTTCGATTCAAAGATGCTGCC 60.794 50.000 0.00 0.00 35.49 4.85
120 121 2.097142 AGCTTCGATTCAAAGATGCTGC 59.903 45.455 5.28 0.00 43.31 5.25
121 122 5.475273 TTAGCTTCGATTCAAAGATGCTG 57.525 39.130 13.64 0.00 44.21 4.41
122 123 6.018098 CAGATTAGCTTCGATTCAAAGATGCT 60.018 38.462 0.00 9.99 45.62 3.79
123 124 6.134730 CAGATTAGCTTCGATTCAAAGATGC 58.865 40.000 0.00 0.00 37.67 3.91
124 125 7.244166 ACAGATTAGCTTCGATTCAAAGATG 57.756 36.000 0.00 0.00 0.00 2.90
125 126 6.199908 CGACAGATTAGCTTCGATTCAAAGAT 59.800 38.462 0.00 0.00 32.55 2.40
126 127 5.516696 CGACAGATTAGCTTCGATTCAAAGA 59.483 40.000 0.00 0.00 32.55 2.52
128 129 4.566759 CCGACAGATTAGCTTCGATTCAAA 59.433 41.667 4.84 0.00 32.55 2.69
129 130 4.112634 CCGACAGATTAGCTTCGATTCAA 58.887 43.478 4.84 0.00 32.55 2.69
131 132 3.487574 CACCGACAGATTAGCTTCGATTC 59.512 47.826 4.84 0.00 32.55 2.52
132 133 3.448686 CACCGACAGATTAGCTTCGATT 58.551 45.455 4.84 0.00 32.55 3.34
133 134 2.223829 CCACCGACAGATTAGCTTCGAT 60.224 50.000 4.84 0.00 32.55 3.59
134 135 1.134367 CCACCGACAGATTAGCTTCGA 59.866 52.381 4.84 0.00 32.55 3.71
135 136 1.134367 TCCACCGACAGATTAGCTTCG 59.866 52.381 0.00 0.00 0.00 3.79
136 137 2.961526 TCCACCGACAGATTAGCTTC 57.038 50.000 0.00 0.00 0.00 3.86
137 138 2.103263 GGATCCACCGACAGATTAGCTT 59.897 50.000 6.95 0.00 0.00 3.74
138 139 1.689273 GGATCCACCGACAGATTAGCT 59.311 52.381 6.95 0.00 0.00 3.32
139 140 1.270358 GGGATCCACCGACAGATTAGC 60.270 57.143 15.23 0.00 40.11 3.09
140 141 1.344763 GGGGATCCACCGACAGATTAG 59.655 57.143 15.23 0.00 40.11 1.73
141 142 1.343580 TGGGGATCCACCGACAGATTA 60.344 52.381 12.68 0.00 38.32 1.75
144 145 2.447920 TGGGGATCCACCGACAGA 59.552 61.111 12.68 0.00 38.32 3.41
153 154 1.065564 GCATAGCAGAGATGGGGATCC 60.066 57.143 1.92 1.92 0.00 3.36
154 155 1.907936 AGCATAGCAGAGATGGGGATC 59.092 52.381 0.00 0.00 0.00 3.36
156 157 1.346062 GAGCATAGCAGAGATGGGGA 58.654 55.000 0.00 0.00 0.00 4.81
157 158 0.324285 GGAGCATAGCAGAGATGGGG 59.676 60.000 0.00 0.00 0.00 4.96
158 159 0.037512 CGGAGCATAGCAGAGATGGG 60.038 60.000 0.00 0.00 0.00 4.00
161 162 0.470833 ACCCGGAGCATAGCAGAGAT 60.471 55.000 0.73 0.00 0.00 2.75
162 163 1.075970 ACCCGGAGCATAGCAGAGA 60.076 57.895 0.73 0.00 0.00 3.10
163 164 1.112315 AGACCCGGAGCATAGCAGAG 61.112 60.000 0.73 0.00 0.00 3.35
165 166 1.112315 AGAGACCCGGAGCATAGCAG 61.112 60.000 0.73 0.00 0.00 4.24
166 167 0.687757 AAGAGACCCGGAGCATAGCA 60.688 55.000 0.73 0.00 0.00 3.49
167 168 0.466124 AAAGAGACCCGGAGCATAGC 59.534 55.000 0.73 0.00 0.00 2.97
198 199 2.168313 CACACCTTCAGTTGCCCTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
199 200 1.756538 CACACCTTCAGTTGCCCTTTT 59.243 47.619 0.00 0.00 0.00 2.27
200 201 1.402787 CACACCTTCAGTTGCCCTTT 58.597 50.000 0.00 0.00 0.00 3.11
201 202 0.468029 CCACACCTTCAGTTGCCCTT 60.468 55.000 0.00 0.00 0.00 3.95
202 203 1.151450 CCACACCTTCAGTTGCCCT 59.849 57.895 0.00 0.00 0.00 5.19
203 204 1.150536 TCCACACCTTCAGTTGCCC 59.849 57.895 0.00 0.00 0.00 5.36
204 205 1.507141 CGTCCACACCTTCAGTTGCC 61.507 60.000 0.00 0.00 0.00 4.52
205 206 1.507141 CCGTCCACACCTTCAGTTGC 61.507 60.000 0.00 0.00 0.00 4.17
206 207 0.105964 TCCGTCCACACCTTCAGTTG 59.894 55.000 0.00 0.00 0.00 3.16
207 208 0.106149 GTCCGTCCACACCTTCAGTT 59.894 55.000 0.00 0.00 0.00 3.16
208 209 1.746517 GTCCGTCCACACCTTCAGT 59.253 57.895 0.00 0.00 0.00 3.41
209 210 1.372997 CGTCCGTCCACACCTTCAG 60.373 63.158 0.00 0.00 0.00 3.02
210 211 2.732016 CGTCCGTCCACACCTTCA 59.268 61.111 0.00 0.00 0.00 3.02
211 212 2.048503 CCGTCCGTCCACACCTTC 60.049 66.667 0.00 0.00 0.00 3.46
212 213 3.622826 CCCGTCCGTCCACACCTT 61.623 66.667 0.00 0.00 0.00 3.50
213 214 3.512154 TACCCGTCCGTCCACACCT 62.512 63.158 0.00 0.00 0.00 4.00
214 215 2.990967 TACCCGTCCGTCCACACC 60.991 66.667 0.00 0.00 0.00 4.16
215 216 2.570181 CTACCCGTCCGTCCACAC 59.430 66.667 0.00 0.00 0.00 3.82
216 217 2.677524 CCTACCCGTCCGTCCACA 60.678 66.667 0.00 0.00 0.00 4.17
217 218 3.455469 CCCTACCCGTCCGTCCAC 61.455 72.222 0.00 0.00 0.00 4.02
218 219 4.764771 CCCCTACCCGTCCGTCCA 62.765 72.222 0.00 0.00 0.00 4.02
219 220 2.647003 ATACCCCTACCCGTCCGTCC 62.647 65.000 0.00 0.00 0.00 4.79
220 221 1.152673 ATACCCCTACCCGTCCGTC 60.153 63.158 0.00 0.00 0.00 4.79
221 222 1.456331 CATACCCCTACCCGTCCGT 60.456 63.158 0.00 0.00 0.00 4.69
222 223 1.152694 TCATACCCCTACCCGTCCG 60.153 63.158 0.00 0.00 0.00 4.79
223 224 1.470165 GCTCATACCCCTACCCGTCC 61.470 65.000 0.00 0.00 0.00 4.79
224 225 0.757935 TGCTCATACCCCTACCCGTC 60.758 60.000 0.00 0.00 0.00 4.79
225 226 1.047034 GTGCTCATACCCCTACCCGT 61.047 60.000 0.00 0.00 0.00 5.28
226 227 1.746517 GTGCTCATACCCCTACCCG 59.253 63.158 0.00 0.00 0.00 5.28
227 228 1.755393 CGGTGCTCATACCCCTACCC 61.755 65.000 0.00 0.00 37.44 3.69
228 229 1.746517 CGGTGCTCATACCCCTACC 59.253 63.158 0.00 0.00 37.44 3.18
229 230 1.069258 GCGGTGCTCATACCCCTAC 59.931 63.158 0.00 0.00 37.44 3.18
230 231 2.138179 GGCGGTGCTCATACCCCTA 61.138 63.158 0.00 0.00 37.44 3.53
231 232 3.480133 GGCGGTGCTCATACCCCT 61.480 66.667 0.00 0.00 37.44 4.79
232 233 3.757248 CTGGCGGTGCTCATACCCC 62.757 68.421 0.00 0.00 37.44 4.95
233 234 2.203070 CTGGCGGTGCTCATACCC 60.203 66.667 0.00 0.00 37.44 3.69
234 235 2.203070 CCTGGCGGTGCTCATACC 60.203 66.667 0.00 0.00 37.37 2.73
235 236 2.203070 CCCTGGCGGTGCTCATAC 60.203 66.667 0.00 0.00 0.00 2.39
236 237 2.687200 ACCCTGGCGGTGCTCATA 60.687 61.111 0.00 0.00 46.09 2.15
287 288 4.228097 TACTACTCGACCGCGCGC 62.228 66.667 27.36 23.91 37.46 6.86
288 289 2.053291 CTACTACTCGACCGCGCG 60.053 66.667 25.67 25.67 37.46 6.86
289 290 2.103581 CTCCTACTACTCGACCGCGC 62.104 65.000 0.00 0.00 37.46 6.86
290 291 0.809241 ACTCCTACTACTCGACCGCG 60.809 60.000 0.00 0.00 39.35 6.46
291 292 0.656785 CACTCCTACTACTCGACCGC 59.343 60.000 0.00 0.00 0.00 5.68
292 293 1.297664 CCACTCCTACTACTCGACCG 58.702 60.000 0.00 0.00 0.00 4.79
293 294 1.023502 GCCACTCCTACTACTCGACC 58.976 60.000 0.00 0.00 0.00 4.79
294 295 0.656785 CGCCACTCCTACTACTCGAC 59.343 60.000 0.00 0.00 0.00 4.20
295 296 0.463295 CCGCCACTCCTACTACTCGA 60.463 60.000 0.00 0.00 0.00 4.04
296 297 0.747283 ACCGCCACTCCTACTACTCG 60.747 60.000 0.00 0.00 0.00 4.18
297 298 0.739561 CACCGCCACTCCTACTACTC 59.260 60.000 0.00 0.00 0.00 2.59
298 299 1.321074 GCACCGCCACTCCTACTACT 61.321 60.000 0.00 0.00 0.00 2.57
299 300 1.141234 GCACCGCCACTCCTACTAC 59.859 63.158 0.00 0.00 0.00 2.73
300 301 2.412323 CGCACCGCCACTCCTACTA 61.412 63.158 0.00 0.00 0.00 1.82
301 302 3.760035 CGCACCGCCACTCCTACT 61.760 66.667 0.00 0.00 0.00 2.57
312 313 4.680237 TCAACCTCCAGCGCACCG 62.680 66.667 11.47 0.00 0.00 4.94
313 314 2.281484 TTCAACCTCCAGCGCACC 60.281 61.111 11.47 0.00 0.00 5.01
314 315 0.674895 ATCTTCAACCTCCAGCGCAC 60.675 55.000 11.47 0.00 0.00 5.34
315 316 0.674581 CATCTTCAACCTCCAGCGCA 60.675 55.000 11.47 0.00 0.00 6.09
316 317 1.372087 CCATCTTCAACCTCCAGCGC 61.372 60.000 0.00 0.00 0.00 5.92
317 318 1.372087 GCCATCTTCAACCTCCAGCG 61.372 60.000 0.00 0.00 0.00 5.18
318 319 1.372087 CGCCATCTTCAACCTCCAGC 61.372 60.000 0.00 0.00 0.00 4.85
319 320 0.250234 TCGCCATCTTCAACCTCCAG 59.750 55.000 0.00 0.00 0.00 3.86
320 321 0.250234 CTCGCCATCTTCAACCTCCA 59.750 55.000 0.00 0.00 0.00 3.86
321 322 0.462759 CCTCGCCATCTTCAACCTCC 60.463 60.000 0.00 0.00 0.00 4.30
322 323 0.250513 ACCTCGCCATCTTCAACCTC 59.749 55.000 0.00 0.00 0.00 3.85
323 324 1.482593 CTACCTCGCCATCTTCAACCT 59.517 52.381 0.00 0.00 0.00 3.50
324 325 1.473434 CCTACCTCGCCATCTTCAACC 60.473 57.143 0.00 0.00 0.00 3.77
325 326 1.473434 CCCTACCTCGCCATCTTCAAC 60.473 57.143 0.00 0.00 0.00 3.18
326 327 0.830648 CCCTACCTCGCCATCTTCAA 59.169 55.000 0.00 0.00 0.00 2.69
327 328 0.325296 ACCCTACCTCGCCATCTTCA 60.325 55.000 0.00 0.00 0.00 3.02
328 329 0.831307 AACCCTACCTCGCCATCTTC 59.169 55.000 0.00 0.00 0.00 2.87
329 330 0.541863 CAACCCTACCTCGCCATCTT 59.458 55.000 0.00 0.00 0.00 2.40
330 331 0.617820 ACAACCCTACCTCGCCATCT 60.618 55.000 0.00 0.00 0.00 2.90
331 332 0.462047 CACAACCCTACCTCGCCATC 60.462 60.000 0.00 0.00 0.00 3.51
332 333 1.602237 CACAACCCTACCTCGCCAT 59.398 57.895 0.00 0.00 0.00 4.40
333 334 2.589157 CCACAACCCTACCTCGCCA 61.589 63.158 0.00 0.00 0.00 5.69
334 335 2.267961 CCACAACCCTACCTCGCC 59.732 66.667 0.00 0.00 0.00 5.54
335 336 1.259840 TACCCACAACCCTACCTCGC 61.260 60.000 0.00 0.00 0.00 5.03
336 337 0.822164 CTACCCACAACCCTACCTCG 59.178 60.000 0.00 0.00 0.00 4.63
337 338 1.553704 CACTACCCACAACCCTACCTC 59.446 57.143 0.00 0.00 0.00 3.85
338 339 1.652947 CACTACCCACAACCCTACCT 58.347 55.000 0.00 0.00 0.00 3.08
339 340 0.035725 GCACTACCCACAACCCTACC 60.036 60.000 0.00 0.00 0.00 3.18
340 341 0.390735 CGCACTACCCACAACCCTAC 60.391 60.000 0.00 0.00 0.00 3.18
341 342 1.976898 CGCACTACCCACAACCCTA 59.023 57.895 0.00 0.00 0.00 3.53
342 343 2.747686 CGCACTACCCACAACCCT 59.252 61.111 0.00 0.00 0.00 4.34
343 344 3.053896 GCGCACTACCCACAACCC 61.054 66.667 0.30 0.00 0.00 4.11
344 345 2.281208 TGCGCACTACCCACAACC 60.281 61.111 5.66 0.00 0.00 3.77
345 346 2.943653 GTGCGCACTACCCACAAC 59.056 61.111 32.55 1.96 0.00 3.32
346 347 2.663520 CGTGCGCACTACCCACAA 60.664 61.111 35.27 0.00 0.00 3.33
347 348 4.673298 CCGTGCGCACTACCCACA 62.673 66.667 35.27 0.00 0.00 4.17
358 359 1.730451 AAAAAGAACCCACCCGTGCG 61.730 55.000 0.00 0.00 0.00 5.34
359 360 2.120765 AAAAAGAACCCACCCGTGC 58.879 52.632 0.00 0.00 0.00 5.34
377 378 6.254157 CCGATACGACCGATAGAAAAGAAAAA 59.746 38.462 0.00 0.00 39.76 1.94
378 379 5.745294 CCGATACGACCGATAGAAAAGAAAA 59.255 40.000 0.00 0.00 39.76 2.29
379 380 5.163622 ACCGATACGACCGATAGAAAAGAAA 60.164 40.000 0.00 0.00 39.76 2.52
380 381 4.336433 ACCGATACGACCGATAGAAAAGAA 59.664 41.667 0.00 0.00 39.76 2.52
381 382 3.879295 ACCGATACGACCGATAGAAAAGA 59.121 43.478 0.00 0.00 39.76 2.52
382 383 4.220533 ACCGATACGACCGATAGAAAAG 57.779 45.455 0.00 0.00 39.76 2.27
383 384 4.096231 TGAACCGATACGACCGATAGAAAA 59.904 41.667 0.00 0.00 39.76 2.29
384 385 3.627123 TGAACCGATACGACCGATAGAAA 59.373 43.478 0.00 0.00 39.76 2.52
385 386 3.205338 TGAACCGATACGACCGATAGAA 58.795 45.455 0.00 0.00 39.76 2.10
386 387 2.804527 CTGAACCGATACGACCGATAGA 59.195 50.000 0.00 0.00 39.76 1.98
387 388 2.095869 CCTGAACCGATACGACCGATAG 60.096 54.545 0.00 0.00 0.00 2.08
388 389 1.875514 CCTGAACCGATACGACCGATA 59.124 52.381 0.00 0.00 0.00 2.92
389 390 0.666913 CCTGAACCGATACGACCGAT 59.333 55.000 0.00 0.00 0.00 4.18
390 391 0.392863 TCCTGAACCGATACGACCGA 60.393 55.000 0.00 0.00 0.00 4.69
391 392 0.666913 ATCCTGAACCGATACGACCG 59.333 55.000 0.00 0.00 0.00 4.79
392 393 1.679680 TGATCCTGAACCGATACGACC 59.320 52.381 0.00 0.00 0.00 4.79
393 394 3.644884 ATGATCCTGAACCGATACGAC 57.355 47.619 0.00 0.00 0.00 4.34
394 395 4.217767 CCTAATGATCCTGAACCGATACGA 59.782 45.833 0.00 0.00 0.00 3.43
395 396 4.217767 TCCTAATGATCCTGAACCGATACG 59.782 45.833 0.00 0.00 0.00 3.06
396 397 5.244178 AGTCCTAATGATCCTGAACCGATAC 59.756 44.000 0.00 0.00 0.00 2.24
397 398 5.394738 AGTCCTAATGATCCTGAACCGATA 58.605 41.667 0.00 0.00 0.00 2.92
398 399 4.227197 AGTCCTAATGATCCTGAACCGAT 58.773 43.478 0.00 0.00 0.00 4.18
399 400 3.643237 AGTCCTAATGATCCTGAACCGA 58.357 45.455 0.00 0.00 0.00 4.69
400 401 4.556898 CGTAGTCCTAATGATCCTGAACCG 60.557 50.000 0.00 0.00 0.00 4.44
401 402 4.262079 CCGTAGTCCTAATGATCCTGAACC 60.262 50.000 0.00 0.00 0.00 3.62
402 403 4.262079 CCCGTAGTCCTAATGATCCTGAAC 60.262 50.000 0.00 0.00 0.00 3.18
403 404 3.895656 CCCGTAGTCCTAATGATCCTGAA 59.104 47.826 0.00 0.00 0.00 3.02
404 405 3.117246 ACCCGTAGTCCTAATGATCCTGA 60.117 47.826 0.00 0.00 0.00 3.86
405 406 3.231818 ACCCGTAGTCCTAATGATCCTG 58.768 50.000 0.00 0.00 0.00 3.86
406 407 3.614568 ACCCGTAGTCCTAATGATCCT 57.385 47.619 0.00 0.00 0.00 3.24
407 408 3.640029 TGAACCCGTAGTCCTAATGATCC 59.360 47.826 0.00 0.00 0.00 3.36
408 409 4.931661 TGAACCCGTAGTCCTAATGATC 57.068 45.455 0.00 0.00 0.00 2.92
409 410 5.888982 ATTGAACCCGTAGTCCTAATGAT 57.111 39.130 0.00 0.00 0.00 2.45
410 411 5.046159 ACAATTGAACCCGTAGTCCTAATGA 60.046 40.000 13.59 0.00 0.00 2.57
411 412 5.183228 ACAATTGAACCCGTAGTCCTAATG 58.817 41.667 13.59 0.00 0.00 1.90
412 413 5.046159 TGACAATTGAACCCGTAGTCCTAAT 60.046 40.000 13.59 0.00 0.00 1.73
413 414 4.283978 TGACAATTGAACCCGTAGTCCTAA 59.716 41.667 13.59 0.00 0.00 2.69
414 415 3.833650 TGACAATTGAACCCGTAGTCCTA 59.166 43.478 13.59 0.00 0.00 2.94
415 416 2.635915 TGACAATTGAACCCGTAGTCCT 59.364 45.455 13.59 0.00 0.00 3.85
416 417 3.000727 CTGACAATTGAACCCGTAGTCC 58.999 50.000 13.59 0.00 0.00 3.85
417 418 3.921677 TCTGACAATTGAACCCGTAGTC 58.078 45.455 13.59 0.00 0.00 2.59
418 419 4.345859 TTCTGACAATTGAACCCGTAGT 57.654 40.909 13.59 0.00 0.00 2.73
419 420 5.682943 TTTTCTGACAATTGAACCCGTAG 57.317 39.130 13.59 0.21 0.00 3.51
420 421 6.711194 TGTATTTTCTGACAATTGAACCCGTA 59.289 34.615 13.59 0.00 0.00 4.02
421 422 5.533154 TGTATTTTCTGACAATTGAACCCGT 59.467 36.000 13.59 0.00 0.00 5.28
422 423 6.007936 TGTATTTTCTGACAATTGAACCCG 57.992 37.500 13.59 0.00 0.00 5.28
423 424 6.813152 CCATGTATTTTCTGACAATTGAACCC 59.187 38.462 13.59 0.00 0.00 4.11
424 425 7.542130 GTCCATGTATTTTCTGACAATTGAACC 59.458 37.037 13.59 1.48 0.00 3.62
425 426 7.542130 GGTCCATGTATTTTCTGACAATTGAAC 59.458 37.037 13.59 6.46 0.00 3.18
426 427 7.451255 AGGTCCATGTATTTTCTGACAATTGAA 59.549 33.333 13.59 0.00 0.00 2.69
427 428 6.947733 AGGTCCATGTATTTTCTGACAATTGA 59.052 34.615 13.59 0.00 0.00 2.57
428 429 7.161773 AGGTCCATGTATTTTCTGACAATTG 57.838 36.000 3.24 3.24 0.00 2.32
429 430 7.781324 AAGGTCCATGTATTTTCTGACAATT 57.219 32.000 0.00 0.00 0.00 2.32
430 431 7.233348 ACAAAGGTCCATGTATTTTCTGACAAT 59.767 33.333 0.00 0.00 0.00 2.71
431 432 6.549364 ACAAAGGTCCATGTATTTTCTGACAA 59.451 34.615 0.00 0.00 0.00 3.18
432 433 6.016360 CACAAAGGTCCATGTATTTTCTGACA 60.016 38.462 0.43 0.00 0.00 3.58
433 434 6.016276 ACACAAAGGTCCATGTATTTTCTGAC 60.016 38.462 0.43 0.00 0.00 3.51
434 435 6.068010 ACACAAAGGTCCATGTATTTTCTGA 58.932 36.000 0.43 0.00 0.00 3.27
435 436 6.331369 ACACAAAGGTCCATGTATTTTCTG 57.669 37.500 0.43 0.00 0.00 3.02
436 437 8.472007 TTTACACAAAGGTCCATGTATTTTCT 57.528 30.769 0.43 0.00 0.00 2.52
437 438 9.535878 TTTTTACACAAAGGTCCATGTATTTTC 57.464 29.630 0.43 0.00 0.00 2.29
438 439 9.320352 GTTTTTACACAAAGGTCCATGTATTTT 57.680 29.630 0.43 0.00 0.00 1.82
439 440 8.478877 TGTTTTTACACAAAGGTCCATGTATTT 58.521 29.630 0.43 0.00 0.00 1.40
440 441 8.012957 TGTTTTTACACAAAGGTCCATGTATT 57.987 30.769 0.43 0.00 0.00 1.89
441 442 7.589958 TGTTTTTACACAAAGGTCCATGTAT 57.410 32.000 0.43 0.00 0.00 2.29
442 443 7.520776 CGATGTTTTTACACAAAGGTCCATGTA 60.521 37.037 0.43 0.00 0.00 2.29
443 444 5.923733 TGTTTTTACACAAAGGTCCATGT 57.076 34.783 0.00 0.00 0.00 3.21
444 445 5.629020 CGATGTTTTTACACAAAGGTCCATG 59.371 40.000 0.00 0.00 0.00 3.66
445 446 5.768317 CGATGTTTTTACACAAAGGTCCAT 58.232 37.500 0.00 0.00 0.00 3.41
446 447 4.498345 GCGATGTTTTTACACAAAGGTCCA 60.498 41.667 0.00 0.00 0.00 4.02
447 448 3.978855 GCGATGTTTTTACACAAAGGTCC 59.021 43.478 0.00 0.00 0.00 4.46
448 449 4.855531 AGCGATGTTTTTACACAAAGGTC 58.144 39.130 0.00 0.00 0.00 3.85
449 450 4.911514 AGCGATGTTTTTACACAAAGGT 57.088 36.364 0.00 0.00 0.00 3.50
450 451 4.843984 CGTAGCGATGTTTTTACACAAAGG 59.156 41.667 0.00 0.00 0.00 3.11
451 452 4.843984 CCGTAGCGATGTTTTTACACAAAG 59.156 41.667 0.00 0.00 0.00 2.77
452 453 4.272991 ACCGTAGCGATGTTTTTACACAAA 59.727 37.500 0.00 0.00 0.00 2.83
453 454 3.808726 ACCGTAGCGATGTTTTTACACAA 59.191 39.130 0.00 0.00 0.00 3.33
454 455 3.184783 CACCGTAGCGATGTTTTTACACA 59.815 43.478 0.00 0.00 0.00 3.72
455 456 3.429543 TCACCGTAGCGATGTTTTTACAC 59.570 43.478 0.00 0.00 0.00 2.90
456 457 3.651206 TCACCGTAGCGATGTTTTTACA 58.349 40.909 0.00 0.00 0.00 2.41
457 458 4.260091 GGATCACCGTAGCGATGTTTTTAC 60.260 45.833 0.00 0.00 0.00 2.01
458 459 3.866910 GGATCACCGTAGCGATGTTTTTA 59.133 43.478 0.00 0.00 0.00 1.52
459 460 2.676342 GGATCACCGTAGCGATGTTTTT 59.324 45.455 0.00 0.00 0.00 1.94
460 461 2.093658 AGGATCACCGTAGCGATGTTTT 60.094 45.455 0.00 0.00 41.83 2.43
461 462 1.480954 AGGATCACCGTAGCGATGTTT 59.519 47.619 0.00 0.00 41.83 2.83
462 463 1.112113 AGGATCACCGTAGCGATGTT 58.888 50.000 0.00 0.00 41.83 2.71
463 464 0.385751 CAGGATCACCGTAGCGATGT 59.614 55.000 0.00 0.00 41.83 3.06
464 465 0.668535 TCAGGATCACCGTAGCGATG 59.331 55.000 0.00 0.00 41.83 3.84
465 466 1.338337 CTTCAGGATCACCGTAGCGAT 59.662 52.381 0.00 0.00 41.83 4.58
466 467 0.738975 CTTCAGGATCACCGTAGCGA 59.261 55.000 0.00 0.00 41.83 4.93
467 468 0.738975 TCTTCAGGATCACCGTAGCG 59.261 55.000 0.00 0.00 41.83 4.26
468 469 1.751924 AGTCTTCAGGATCACCGTAGC 59.248 52.381 0.00 0.00 41.83 3.58
469 470 3.017442 TCAGTCTTCAGGATCACCGTAG 58.983 50.000 0.00 0.00 41.83 3.51
470 471 3.081710 TCAGTCTTCAGGATCACCGTA 57.918 47.619 0.00 0.00 41.83 4.02
471 472 1.924731 TCAGTCTTCAGGATCACCGT 58.075 50.000 0.00 0.00 41.83 4.83
472 473 3.452474 GATTCAGTCTTCAGGATCACCG 58.548 50.000 0.00 0.00 41.83 4.94
473 474 3.739519 CGGATTCAGTCTTCAGGATCACC 60.740 52.174 0.00 0.00 0.00 4.02
474 475 3.118956 ACGGATTCAGTCTTCAGGATCAC 60.119 47.826 0.00 0.00 0.00 3.06
475 476 3.099905 ACGGATTCAGTCTTCAGGATCA 58.900 45.455 0.00 0.00 0.00 2.92
476 477 3.452474 CACGGATTCAGTCTTCAGGATC 58.548 50.000 0.00 0.00 0.00 3.36
477 478 2.419297 GCACGGATTCAGTCTTCAGGAT 60.419 50.000 0.00 0.00 0.00 3.24
478 479 1.066858 GCACGGATTCAGTCTTCAGGA 60.067 52.381 0.00 0.00 0.00 3.86
479 480 1.066573 AGCACGGATTCAGTCTTCAGG 60.067 52.381 0.00 0.00 0.00 3.86
480 481 2.376808 AGCACGGATTCAGTCTTCAG 57.623 50.000 0.00 0.00 0.00 3.02
481 482 2.839486 AAGCACGGATTCAGTCTTCA 57.161 45.000 0.00 0.00 0.00 3.02
482 483 5.803020 AATAAAGCACGGATTCAGTCTTC 57.197 39.130 0.00 0.00 0.00 2.87
483 484 7.865706 AATAATAAAGCACGGATTCAGTCTT 57.134 32.000 0.00 0.00 0.00 3.01
484 485 8.958119 TTAATAATAAAGCACGGATTCAGTCT 57.042 30.769 0.00 0.00 0.00 3.24
485 486 8.283291 CCTTAATAATAAAGCACGGATTCAGTC 58.717 37.037 0.00 0.00 0.00 3.51
486 487 7.990886 TCCTTAATAATAAAGCACGGATTCAGT 59.009 33.333 0.00 0.00 0.00 3.41
487 488 8.378172 TCCTTAATAATAAAGCACGGATTCAG 57.622 34.615 0.00 0.00 0.00 3.02
488 489 8.208224 TCTCCTTAATAATAAAGCACGGATTCA 58.792 33.333 0.00 0.00 0.00 2.57
489 490 8.603242 TCTCCTTAATAATAAAGCACGGATTC 57.397 34.615 0.00 0.00 0.00 2.52
490 491 8.429641 TCTCTCCTTAATAATAAAGCACGGATT 58.570 33.333 0.00 0.00 0.00 3.01
491 492 7.963532 TCTCTCCTTAATAATAAAGCACGGAT 58.036 34.615 0.00 0.00 0.00 4.18
492 493 7.356089 TCTCTCCTTAATAATAAAGCACGGA 57.644 36.000 0.00 0.00 0.00 4.69
493 494 9.706691 TTATCTCTCCTTAATAATAAAGCACGG 57.293 33.333 0.00 0.00 0.00 4.94
512 513 9.699703 GGCTAAACTATCTTTCGAATTATCTCT 57.300 33.333 0.00 0.00 0.00 3.10
513 514 9.699703 AGGCTAAACTATCTTTCGAATTATCTC 57.300 33.333 0.00 0.00 0.00 2.75
514 515 9.482627 CAGGCTAAACTATCTTTCGAATTATCT 57.517 33.333 0.00 0.00 0.00 1.98
515 516 9.262358 ACAGGCTAAACTATCTTTCGAATTATC 57.738 33.333 0.00 0.00 0.00 1.75
517 518 9.525409 GTACAGGCTAAACTATCTTTCGAATTA 57.475 33.333 0.00 0.00 0.00 1.40
518 519 8.038944 TGTACAGGCTAAACTATCTTTCGAATT 58.961 33.333 0.00 0.00 0.00 2.17
519 520 7.553334 TGTACAGGCTAAACTATCTTTCGAAT 58.447 34.615 0.00 0.00 0.00 3.34
520 521 6.927416 TGTACAGGCTAAACTATCTTTCGAA 58.073 36.000 0.00 0.00 0.00 3.71
521 522 6.376299 TCTGTACAGGCTAAACTATCTTTCGA 59.624 38.462 22.48 0.00 0.00 3.71
522 523 6.472808 GTCTGTACAGGCTAAACTATCTTTCG 59.527 42.308 20.28 0.00 0.00 3.46
523 524 6.472808 CGTCTGTACAGGCTAAACTATCTTTC 59.527 42.308 24.20 0.00 0.00 2.62
524 525 6.152323 TCGTCTGTACAGGCTAAACTATCTTT 59.848 38.462 24.20 0.00 0.00 2.52
737 741 6.601332 AGCTAGCTCCTCTCCATATCTATAC 58.399 44.000 12.68 0.00 0.00 1.47
784 789 6.489361 TGGCCCACGTACTAAAGAAAAATAAA 59.511 34.615 0.00 0.00 0.00 1.40
785 790 6.002704 TGGCCCACGTACTAAAGAAAAATAA 58.997 36.000 0.00 0.00 0.00 1.40
786 791 5.558818 TGGCCCACGTACTAAAGAAAAATA 58.441 37.500 0.00 0.00 0.00 1.40
787 792 4.400120 TGGCCCACGTACTAAAGAAAAAT 58.600 39.130 0.00 0.00 0.00 1.82
793 800 2.073816 CAACTGGCCCACGTACTAAAG 58.926 52.381 0.00 0.00 0.00 1.85
827 834 5.185249 TCAGAGGGTATTAATAGGACGATGC 59.815 44.000 0.00 0.00 0.00 3.91
829 836 7.523380 CGTTTCAGAGGGTATTAATAGGACGAT 60.523 40.741 0.00 0.00 0.00 3.73
885 892 1.955778 TGTGCTGAGATTTGTGTTGGG 59.044 47.619 0.00 0.00 0.00 4.12
901 908 7.148507 GCAATAGGATGTACTGAATAGATGTGC 60.149 40.741 0.00 0.00 0.00 4.57
1077 1087 9.726232 ACGGACAGTAAAACTTTTCTATTTTTC 57.274 29.630 0.00 0.00 30.80 2.29
1199 1278 2.037620 GAGCAGGCGATGGATCCACT 62.038 60.000 18.99 7.63 0.00 4.00
1280 1359 0.250234 GCATGCTATCTCCGGGCATA 59.750 55.000 11.37 4.28 43.62 3.14
1350 1429 2.032634 GCTGAACGAACCCGATGCA 61.033 57.895 0.00 0.00 39.50 3.96
1353 1432 0.736325 CGAAGCTGAACGAACCCGAT 60.736 55.000 0.00 0.00 39.50 4.18
1406 1485 1.339438 GCCTCATCTTCTTCCACTGCA 60.339 52.381 0.00 0.00 0.00 4.41
1453 1679 0.674895 AGTTTCTGCTCCATGGACGC 60.675 55.000 22.16 22.16 0.00 5.19
1534 1772 2.353704 CGACTAGGCTGTTTGGACATGA 60.354 50.000 0.00 0.00 34.72 3.07
1569 1807 2.625790 GTTACCACAGAAATGTTGGGCA 59.374 45.455 0.00 0.00 0.00 5.36
1686 1924 4.785512 AGCGTGAAGAGAGCGGCG 62.786 66.667 0.51 0.51 35.78 6.46
1752 1990 1.284785 CCCTCCAAATCAAGCCCTACA 59.715 52.381 0.00 0.00 0.00 2.74
1791 2029 4.683129 CGGTTGAGTATTCCCATGACATCA 60.683 45.833 0.00 0.00 0.00 3.07
1818 2056 3.781965 TCTTCTCAATGATGGGGTCATGA 59.218 43.478 0.00 0.00 46.80 3.07
1908 2197 5.545588 TCTGCATCATCTAGATAAACCAGC 58.454 41.667 4.54 5.08 34.43 4.85
2141 2442 1.811965 TCGACAGCATTTGATGGGTTG 59.188 47.619 0.48 0.00 35.42 3.77
2414 2715 0.037734 GGTTCCGACCAAGTCCCATT 59.962 55.000 0.00 0.00 45.77 3.16
2516 2817 7.754625 TCCCACTACTAAATGAAATAAAACGC 58.245 34.615 0.00 0.00 0.00 4.84
2697 2998 1.812571 CCGTGGTTTAGCTTGCAGAAT 59.187 47.619 0.00 0.00 0.00 2.40
2935 3245 2.195567 GCTGCTTCTGCCCACACAA 61.196 57.895 0.00 0.00 38.71 3.33
3164 3479 6.813649 TCACCAGTCTTCATCTTATTTTCTCG 59.186 38.462 0.00 0.00 0.00 4.04
3412 3729 1.800805 CAAGCGAAAGAAGAGAGCCA 58.199 50.000 0.00 0.00 0.00 4.75
3521 3838 9.108284 CCATATATATTGACGGTGCAAATATGA 57.892 33.333 9.77 1.05 32.96 2.15
3719 4036 9.899226 GAGCTTGACAAGAAAATATTTGTAAGT 57.101 29.630 19.51 0.00 37.63 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.