AutoCloner

Multiple sequence alignment - TraesCS2A01G018300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G018300	chr2A	100.000	3701	0	0	1	3701	8681728	8685428	0.000000e+00	6835.0
1	TraesCS2A01G018300	chr2A	81.567	1302	211	18	1474	2753	8631178	8632472	0.000000e+00	1048.0
2	TraesCS2A01G018300	chr2A	81.614	1202	215	2	1475	2676	9944313	9945508	0.000000e+00	990.0
3	TraesCS2A01G018300	chr2A	80.728	1292	225	14	1474	2753	7786726	7788005	0.000000e+00	985.0
4	TraesCS2A01G018300	chr2A	80.633	1296	217	19	1474	2745	9094270	9092985	0.000000e+00	972.0
5	TraesCS2A01G018300	chr2A	90.926	551	45	4	927	1475	8152254	8152801	0.000000e+00	736.0
6	TraesCS2A01G018300	chr2A	84.680	359	52	2	927	1282	7727327	7727685	4.550000e-94	355.0
7	TraesCS2A01G018300	chr2D	95.450	2044	46	9	1474	3497	9588512	9590528	0.000000e+00	3216.0
8	TraesCS2A01G018300	chr2D	94.953	1169	37	6	120	1272	9587409	9588571	0.000000e+00	1812.0
9	TraesCS2A01G018300	chr2D	81.115	1292	220	15	1474	2753	8683598	8684877	0.000000e+00	1013.0
10	TraesCS2A01G018300	chr2D	80.352	1308	205	24	1474	2745	85929364	85928073	0.000000e+00	944.0
11	TraesCS2A01G018300	chr2D	87.114	551	67	3	927	1475	8957833	8957285	4.060000e-174	621.0
12	TraesCS2A01G018300	chr2D	84.755	551	76	4	927	1475	8837770	8837226	2.510000e-151	545.0
13	TraesCS2A01G018300	chr2D	85.143	350	49	2	927	1273	8659724	8660073	4.550000e-94	355.0
14	TraesCS2A01G018300	chr2D	95.798	119	2	2	3583	3701	9592679	9592794	4.880000e-44	189.0
15	TraesCS2A01G018300	chr2D	98.980	98	1	0	1	98	9587062	9587159	3.800000e-40	176.0
16	TraesCS2A01G018300	chr2D	100.000	59	0	0	3489	3547	9592628	9592686	3.910000e-20	110.0
17	TraesCS2A01G018300	chr2D	84.127	63	10	0	2689	2751	85926610	85926548	1.110000e-05	62.1
18	TraesCS2A01G018300	chr2B	87.870	2193	211	22	1474	3625	12942645	12944823	0.000000e+00	2525.0
19	TraesCS2A01G018300	chr2B	86.899	2267	222	40	1474	3701	11539443	11537213	0.000000e+00	2471.0
20	TraesCS2A01G018300	chr2B	86.319	921	82	23	363	1272	12941817	12942704	0.000000e+00	963.0
21	TraesCS2A01G018300	chr2B	80.199	1308	208	22	1475	2745	138993071	138991778	0.000000e+00	933.0
22	TraesCS2A01G018300	chr2B	89.827	521	31	8	120	632	11540472	11539966	0.000000e+00	649.0
23	TraesCS2A01G018300	chr2B	87.739	522	46	9	769	1272	11539905	11539384	8.850000e-166	593.0
24	TraesCS2A01G018300	chr2B	92.727	220	14	1	117	336	12941600	12941817	2.150000e-82	316.0
25	TraesCS2A01G018300	chr2B	93.617	94	6	0	9	102	11540789	11540696	1.390000e-29	141.0
26	TraesCS2A01G018300	chr4D	82.810	1210	198	7	1471	2676	464204823	464206026	0.000000e+00	1074.0
27	TraesCS2A01G018300	chr3D	87.796	549	66	1	927	1475	564000205	563999658	3.120000e-180	641.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G018300	chr2A	8681728	8685428	3700	False	6835.00	6835	100.0000	1	3701	1	chr2A.!!$F5	3700
1	TraesCS2A01G018300	chr2A	8631178	8632472	1294	False	1048.00	1048	81.5670	1474	2753	1	chr2A.!!$F4	1279
2	TraesCS2A01G018300	chr2A	9944313	9945508	1195	False	990.00	990	81.6140	1475	2676	1	chr2A.!!$F6	1201
3	TraesCS2A01G018300	chr2A	7786726	7788005	1279	False	985.00	985	80.7280	1474	2753	1	chr2A.!!$F2	1279
4	TraesCS2A01G018300	chr2A	9092985	9094270	1285	True	972.00	972	80.6330	1474	2745	1	chr2A.!!$R1	1271
5	TraesCS2A01G018300	chr2A	8152254	8152801	547	False	736.00	736	90.9260	927	1475	1	chr2A.!!$F3	548
6	TraesCS2A01G018300	chr2D	9587062	9592794	5732	False	1100.60	3216	97.0362	1	3701	5	chr2D.!!$F3	3700
7	TraesCS2A01G018300	chr2D	8683598	8684877	1279	False	1013.00	1013	81.1150	1474	2753	1	chr2D.!!$F2	1279
8	TraesCS2A01G018300	chr2D	8957285	8957833	548	True	621.00	621	87.1140	927	1475	1	chr2D.!!$R2	548
9	TraesCS2A01G018300	chr2D	8837226	8837770	544	True	545.00	545	84.7550	927	1475	1	chr2D.!!$R1	548
10	TraesCS2A01G018300	chr2D	85926548	85929364	2816	True	503.05	944	82.2395	1474	2751	2	chr2D.!!$R3	1277
11	TraesCS2A01G018300	chr2B	12941600	12944823	3223	False	1268.00	2525	88.9720	117	3625	3	chr2B.!!$F1	3508
12	TraesCS2A01G018300	chr2B	11537213	11540789	3576	True	963.50	2471	89.5205	9	3701	4	chr2B.!!$R2	3692
13	TraesCS2A01G018300	chr2B	138991778	138993071	1293	True	933.00	933	80.1990	1475	2745	1	chr2B.!!$R1	1270
14	TraesCS2A01G018300	chr4D	464204823	464206026	1203	False	1074.00	1074	82.8100	1471	2676	1	chr4D.!!$F1	1205
15	TraesCS2A01G018300	chr3D	563999658	564000205	547	True	641.00	641	87.7960	927	1475	1	chr3D.!!$R1	548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
490	744	0.521291	ACATGGTGCAACGGATTTCG	59.479	50.000	0.00	0.00	45.88	3.46	F
735	991	1.240256	GCAATTTCCACGGTGGTACA	58.760	50.000	25.53	11.88	39.03	2.90	F
1928	2228	1.003839	ATGAAAGGGTTCGCTCGCA	60.004	52.632	0.00	0.00	36.46	5.10	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1638	1938	2.435372	AACTTTCCAAGGCACTGTGA	57.565	45.0	12.86	0.00	40.86	3.58	R
2012	2312	5.349817	ACATCAGAAGCAAACTCGATAACTG	59.650	40.0	0.00	0.00	0.00	3.16	R
3244	3778	0.108138	GCTGTGCTAGGTCGACCATT	60.108	55.0	35.00	18.98	38.89	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	100	0.983467	TGGCACAGGCTAGTCAATCA	59.017	50.000	0.00	0.00	40.87	2.57
102	103	1.065854	GCACAGGCTAGTCAATCACCT	60.066	52.381	0.00	0.00	36.96	4.00
104	105	3.265791	CACAGGCTAGTCAATCACCTTC	58.734	50.000	0.00	0.00	0.00	3.46
105	106	3.055530	CACAGGCTAGTCAATCACCTTCT	60.056	47.826	0.00	0.00	0.00	2.85
106	107	3.055530	ACAGGCTAGTCAATCACCTTCTG	60.056	47.826	0.00	0.00	0.00	3.02
107	108	3.196469	CAGGCTAGTCAATCACCTTCTGA	59.804	47.826	0.00	0.00	0.00	3.27
109	110	3.449018	GGCTAGTCAATCACCTTCTGAGA	59.551	47.826	0.00	0.00	30.20	3.27
110	111	4.441356	GGCTAGTCAATCACCTTCTGAGAG	60.441	50.000	0.00	0.00	30.20	3.20
112	113	4.799564	AGTCAATCACCTTCTGAGAGAC	57.200	45.455	0.00	0.00	37.09	3.36
114	115	2.834549	TCAATCACCTTCTGAGAGACCC	59.165	50.000	0.00	0.00	30.20	4.46
115	116	1.872773	ATCACCTTCTGAGAGACCCC	58.127	55.000	0.00	0.00	30.20	4.95
180	412	2.511600	CCCCGACGACAATGAGGC	60.512	66.667	0.00	0.00	0.00	4.70
330	582	8.633561	GCTTTGATAATTGCTCTAACCCTAATT	58.366	33.333	0.00	0.00	0.00	1.40
386	638	6.049149	CAGACAACTCCTAGTTTCAAACAGA	58.951	40.000	2.41	0.00	36.03	3.41
410	663	6.633668	AAACAAATCAAGTCTCTATCGTCG	57.366	37.500	0.00	0.00	0.00	5.12
417	670	4.094590	TCAAGTCTCTATCGTCGGAAGTTC	59.905	45.833	0.00	0.00	0.00	3.01
427	680	3.446161	TCGTCGGAAGTTCCATCATACTT	59.554	43.478	21.76	0.00	35.91	2.24
428	681	4.081862	TCGTCGGAAGTTCCATCATACTTT	60.082	41.667	21.76	0.00	35.91	2.66
429	682	4.630069	CGTCGGAAGTTCCATCATACTTTT	59.370	41.667	21.76	0.00	35.91	2.27
490	744	0.521291	ACATGGTGCAACGGATTTCG	59.479	50.000	0.00	0.00	45.88	3.46
582	836	6.626882	GCAAAAATGTACAAACAAAATGGTCG	59.373	34.615	0.00	0.00	39.58	4.79
611	865	4.509600	CCTCCGAAAGATTACTGAAGCATC	59.490	45.833	0.00	0.00	0.00	3.91
614	868	4.566759	CCGAAAGATTACTGAAGCATCGAA	59.433	41.667	0.00	0.00	35.72	3.71
691	947	2.335752	CAATTTGTTGCGCCATGCTTA	58.664	42.857	4.18	0.00	46.63	3.09
735	991	1.240256	GCAATTTCCACGGTGGTACA	58.760	50.000	25.53	11.88	39.03	2.90
879	1150	1.651737	TAAGTGCAGAAGGGTGGCTA	58.348	50.000	0.00	0.00	0.00	3.93
952	1228	2.749441	GCAGAAGCCAGCCCAGTC	60.749	66.667	0.00	0.00	33.58	3.51
1569	1851	3.891366	ACAAGGTTAGCAGCAACAATTCT	59.109	39.130	0.00	0.00	0.00	2.40
1638	1938	1.056700	AGGGCACACACCTTGAGTCT	61.057	55.000	0.00	0.00	33.64	3.24
1701	2001	6.714810	ACATGGTAGAATTTGTTGTGCTTCTA	59.285	34.615	0.00	0.00	0.00	2.10
1928	2228	1.003839	ATGAAAGGGTTCGCTCGCA	60.004	52.632	0.00	0.00	36.46	5.10
2012	2312	2.101917	CCATGGAAGGAATGATGTTGGC	59.898	50.000	5.56	0.00	0.00	4.52
2807	3175	5.907866	TTACAGATCTCAATGACCGTACA	57.092	39.130	0.00	0.00	0.00	2.90
2956	3367	5.430745	AGGGGTATATGCATCATCATCATCA	59.569	40.000	0.19	0.00	0.00	3.07
3065	3476	7.499232	GCTCCATGTAAAAAGAGGATTAAGCTA	59.501	37.037	0.00	0.00	0.00	3.32
3074	3485	9.515226	AAAAAGAGGATTAAGCTATGTGTGTAA	57.485	29.630	0.00	0.00	0.00	2.41
3099	3632	7.938563	TGTGGATTAGTAAATGTTTGCAAAC	57.061	32.000	30.95	30.95	39.33	2.93
3104	3637	7.870445	GGATTAGTAAATGTTTGCAAACTTCCA	59.130	33.333	35.09	20.40	39.59	3.53
3139	3672	4.915667	GGTTTTGAACTCAAATTACCGAGC	59.084	41.667	5.75	0.00	44.30	5.03
3226	3760	2.789917	GCGAGTGGCTCATGCTTG	59.210	61.111	0.00	0.00	39.11	4.01
3227	3761	2.037136	GCGAGTGGCTCATGCTTGT	61.037	57.895	0.00	0.00	39.11	3.16
3228	3762	1.792301	CGAGTGGCTCATGCTTGTG	59.208	57.895	0.00	0.00	39.59	3.33
3229	3763	1.642037	CGAGTGGCTCATGCTTGTGG	61.642	60.000	0.00	0.00	39.59	4.17
3230	3764	1.303888	AGTGGCTCATGCTTGTGGG	60.304	57.895	0.00	0.00	39.59	4.61
3231	3765	2.677524	TGGCTCATGCTTGTGGGC	60.678	61.111	0.00	7.10	44.95	5.36
3233	3767	3.455469	GCTCATGCTTGTGGGCCC	61.455	66.667	17.59	17.59	39.73	5.80
3234	3768	2.357836	CTCATGCTTGTGGGCCCT	59.642	61.111	25.70	0.00	0.00	5.19
3235	3769	1.304713	CTCATGCTTGTGGGCCCTT	60.305	57.895	25.70	0.00	0.00	3.95
3236	3770	1.601419	CTCATGCTTGTGGGCCCTTG	61.601	60.000	25.70	11.30	0.00	3.61
3237	3771	1.607178	CATGCTTGTGGGCCCTTGA	60.607	57.895	25.70	7.39	0.00	3.02
3238	3772	1.304713	ATGCTTGTGGGCCCTTGAG	60.305	57.895	25.70	17.99	0.00	3.02
3239	3773	2.677875	GCTTGTGGGCCCTTGAGG	60.678	66.667	25.70	10.51	39.47	3.86
3240	3774	2.846532	CTTGTGGGCCCTTGAGGT	59.153	61.111	25.70	0.00	38.26	3.85
3241	3775	1.604593	CTTGTGGGCCCTTGAGGTG	60.605	63.158	25.70	2.74	38.26	4.00
3242	3776	2.067932	CTTGTGGGCCCTTGAGGTGA	62.068	60.000	25.70	0.00	38.26	4.02
3243	3777	1.434513	TTGTGGGCCCTTGAGGTGAT	61.435	55.000	25.70	0.00	38.26	3.06
3244	3778	0.548926	TGTGGGCCCTTGAGGTGATA	60.549	55.000	25.70	0.00	38.26	2.15
3284	3843	0.921896	CCTCACCTTCATCCCACCAT	59.078	55.000	0.00	0.00	0.00	3.55
3315	3874	4.227527	GGGTTTAGGGAAGAAGGAGAATGA	59.772	45.833	0.00	0.00	0.00	2.57
3327	3886	1.342819	GGAGAATGAGGGAGTCATCGG	59.657	57.143	0.00	0.00	45.89	4.18
3345	3904	0.682855	GGCGGTGGATTTTCCCATCA	60.683	55.000	0.00	0.00	37.16	3.07
3349	3908	2.423538	CGGTGGATTTTCCCATCAGAAC	59.576	50.000	0.00	0.00	37.16	3.01
3355	3914	6.018469	TGGATTTTCCCATCAGAACAGAAAT	58.982	36.000	0.00	0.00	35.03	2.17
3404	3963	2.102420	CGCTAGGTCCCACATGTCAATA	59.898	50.000	0.00	0.00	0.00	1.90
3478	4037	5.782047	CCACTATGGCTCAAATTTTGTTGA	58.218	37.500	8.89	0.00	36.15	3.18
3541	6209	3.496884	GTGCTAATGTCGAAGAAACACCA	59.503	43.478	0.00	0.00	39.69	4.17
3542	6210	3.745975	TGCTAATGTCGAAGAAACACCAG	59.254	43.478	0.00	0.00	39.69	4.00
3543	6211	3.746492	GCTAATGTCGAAGAAACACCAGT	59.254	43.478	0.00	0.00	39.69	4.00
3550	6218	4.989168	GTCGAAGAAACACCAGTTATCACT	59.011	41.667	0.00	0.00	39.69	3.41
3555	6223	4.281182	AGAAACACCAGTTATCACTCGTCT	59.719	41.667	0.00	0.00	36.84	4.18
3560	6228	4.750098	CACCAGTTATCACTCGTCTGTTTT	59.250	41.667	0.00	0.00	0.00	2.43
3561	6229	4.750098	ACCAGTTATCACTCGTCTGTTTTG	59.250	41.667	0.00	0.00	0.00	2.44
3564	6232	2.550830	ATCACTCGTCTGTTTTGCCT	57.449	45.000	0.00	0.00	0.00	4.75
3565	6233	1.865865	TCACTCGTCTGTTTTGCCTC	58.134	50.000	0.00	0.00	0.00	4.70
3575	6243	5.573146	GTCTGTTTTGCCTCATGTAATAGC	58.427	41.667	0.00	0.00	0.00	2.97
3576	6244	5.355350	GTCTGTTTTGCCTCATGTAATAGCT	59.645	40.000	0.00	0.00	0.00	3.32
3616	6284	7.373617	TGGGATCTTGTATGCTAACTAATCA	57.626	36.000	0.00	0.00	0.00	2.57
3682	6350	8.619546	CATTTTCTTGGCCTTTGTAAATGAAAA	58.380	29.630	19.63	15.62	34.90	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
99	100	0.907230	GCAGGGGTCTCTCAGAAGGT	60.907	60.000	0.00	0.00	0.00	3.50
102	103	2.043115	TCTTAGCAGGGGTCTCTCAGAA	59.957	50.000	0.00	0.00	0.00	3.02
104	105	2.151502	TCTTAGCAGGGGTCTCTCAG	57.848	55.000	0.00	0.00	0.00	3.35
105	106	2.623418	TTCTTAGCAGGGGTCTCTCA	57.377	50.000	0.00	0.00	0.00	3.27
106	107	3.100671	TCTTTCTTAGCAGGGGTCTCTC	58.899	50.000	0.00	0.00	0.00	3.20
107	108	2.835156	GTCTTTCTTAGCAGGGGTCTCT	59.165	50.000	0.00	0.00	0.00	3.10
109	110	1.550976	CGTCTTTCTTAGCAGGGGTCT	59.449	52.381	0.00	0.00	0.00	3.85
110	111	1.549170	TCGTCTTTCTTAGCAGGGGTC	59.451	52.381	0.00	0.00	0.00	4.46
112	113	1.405661	GGTCGTCTTTCTTAGCAGGGG	60.406	57.143	0.00	0.00	0.00	4.79
114	115	1.630148	CGGTCGTCTTTCTTAGCAGG	58.370	55.000	0.00	0.00	0.00	4.85
115	116	1.067776	ACCGGTCGTCTTTCTTAGCAG	60.068	52.381	0.00	0.00	0.00	4.24
180	412	2.433838	CAGTGGCACTGGAGAGCG	60.434	66.667	34.59	11.80	42.35	5.03
344	596	1.730064	CTGCCTGCATGAAATTGTTGC	59.270	47.619	0.00	1.64	36.91	4.17
386	638	6.090898	CCGACGATAGAGACTTGATTTGTTTT	59.909	38.462	0.00	0.00	41.38	2.43
451	704	3.188254	TGTGCATTCTTCACATTGGTACG	59.812	43.478	0.00	0.00	39.29	3.67
536	790	3.306156	GCTCCTTTAGTCCTTCAGAACGT	60.306	47.826	0.00	0.00	0.00	3.99
582	836	6.150396	TCAGTAATCTTTCGGAGGAGATTC	57.850	41.667	16.88	11.40	39.84	2.52
691	947	2.033550	GGCTAGATGAACGACAGTCGAT	59.966	50.000	29.53	18.35	43.74	3.59
879	1150	0.972883	GAGGTTGGCTGAGACTGTCT	59.027	55.000	10.66	10.66	0.00	3.41
952	1228	8.055279	TGCCTTTTGGTCTCTAGATAAATTTG	57.945	34.615	0.00	0.00	42.99	2.32
1569	1851	5.354234	GGCTAAATACAAACTGCTGCTAGAA	59.646	40.000	0.00	0.00	0.00	2.10
1605	1896	4.069304	GTGTGCCCTTATCAGTTGTTGTA	58.931	43.478	0.00	0.00	0.00	2.41
1638	1938	2.435372	AACTTTCCAAGGCACTGTGA	57.565	45.000	12.86	0.00	40.86	3.58
1928	2228	6.721318	TCTAAGTGCAATACAGAAGGGAATT	58.279	36.000	0.00	0.00	0.00	2.17
2012	2312	5.349817	ACATCAGAAGCAAACTCGATAACTG	59.650	40.000	0.00	0.00	0.00	3.16
3065	3476	9.461312	ACATTTACTAATCCACATTACACACAT	57.539	29.630	0.00	0.00	0.00	3.21
3074	3485	8.367156	AGTTTGCAAACATTTACTAATCCACAT	58.633	29.630	36.46	12.84	41.30	3.21
3099	3632	9.288124	GTTCAAAACCATTTCAATTTTTGGAAG	57.712	29.630	5.96	0.00	38.77	3.46
3139	3672	4.797471	TGCGAGTTCTTTGAAATGGATTG	58.203	39.130	0.00	0.00	0.00	2.67
3215	3749	3.455469	GGCCCACAAGCATGAGCC	61.455	66.667	0.00	1.14	43.56	4.70
3220	3754	1.304713	CTCAAGGGCCCACAAGCAT	60.305	57.895	27.56	0.00	0.00	3.79
3221	3755	2.115910	CTCAAGGGCCCACAAGCA	59.884	61.111	27.56	0.00	0.00	3.91
3222	3756	2.677875	CCTCAAGGGCCCACAAGC	60.678	66.667	27.56	0.00	0.00	4.01
3223	3757	1.604593	CACCTCAAGGGCCCACAAG	60.605	63.158	27.56	17.16	40.27	3.16
3224	3758	1.434513	ATCACCTCAAGGGCCCACAA	61.435	55.000	27.56	7.25	40.27	3.33
3225	3759	0.548926	TATCACCTCAAGGGCCCACA	60.549	55.000	27.56	5.76	40.27	4.17
3226	3760	0.623723	TTATCACCTCAAGGGCCCAC	59.376	55.000	27.56	0.00	40.27	4.61
3227	3761	1.215173	CATTATCACCTCAAGGGCCCA	59.785	52.381	27.56	1.18	40.27	5.36
3228	3762	1.479389	CCATTATCACCTCAAGGGCCC	60.479	57.143	16.46	16.46	40.27	5.80
3229	3763	1.215423	ACCATTATCACCTCAAGGGCC	59.785	52.381	0.00	0.00	40.27	5.80
3230	3764	2.576615	GACCATTATCACCTCAAGGGC	58.423	52.381	0.29	0.00	40.27	5.19
3231	3765	2.434336	TCGACCATTATCACCTCAAGGG	59.566	50.000	0.29	0.00	40.27	3.95
3232	3766	3.458189	GTCGACCATTATCACCTCAAGG	58.542	50.000	3.51	0.00	42.17	3.61
3233	3767	3.133003	AGGTCGACCATTATCACCTCAAG	59.867	47.826	35.00	0.00	38.89	3.02
3234	3768	3.104512	AGGTCGACCATTATCACCTCAA	58.895	45.455	35.00	0.00	38.89	3.02
3235	3769	2.747177	AGGTCGACCATTATCACCTCA	58.253	47.619	35.00	0.00	38.89	3.86
3236	3770	3.305471	GCTAGGTCGACCATTATCACCTC	60.305	52.174	35.00	4.63	38.47	3.85
3237	3771	2.628657	GCTAGGTCGACCATTATCACCT	59.371	50.000	35.00	14.46	40.67	4.00
3238	3772	2.364324	TGCTAGGTCGACCATTATCACC	59.636	50.000	35.00	14.53	38.89	4.02
3239	3773	3.181479	TGTGCTAGGTCGACCATTATCAC	60.181	47.826	35.00	28.91	38.89	3.06
3240	3774	3.028130	TGTGCTAGGTCGACCATTATCA	58.972	45.455	35.00	23.41	38.89	2.15
3241	3775	3.643763	CTGTGCTAGGTCGACCATTATC	58.356	50.000	35.00	21.31	38.89	1.75
3242	3776	2.224066	GCTGTGCTAGGTCGACCATTAT	60.224	50.000	35.00	17.84	38.89	1.28
3243	3777	1.136305	GCTGTGCTAGGTCGACCATTA	59.864	52.381	35.00	19.09	38.89	1.90
3244	3778	0.108138	GCTGTGCTAGGTCGACCATT	60.108	55.000	35.00	18.98	38.89	3.16
3284	3843	1.072648	CTTCCCTAAACCCAACCACGA	59.927	52.381	0.00	0.00	0.00	4.35
3315	3874	3.461773	CACCGCCGATGACTCCCT	61.462	66.667	0.00	0.00	0.00	4.20
3327	3886	0.740737	CTGATGGGAAAATCCACCGC	59.259	55.000	0.00	0.00	39.97	5.68
3345	3904	5.682212	GCAGGAAACAAACCATTTCTGTTCT	60.682	40.000	0.00	0.00	36.49	3.01
3349	3908	4.326504	AGCAGGAAACAAACCATTTCTG	57.673	40.909	0.00	0.00	36.49	3.02
3355	3914	5.442391	AGTAAGTTAGCAGGAAACAAACCA	58.558	37.500	0.00	0.00	0.00	3.67
3541	6209	3.746492	GGCAAAACAGACGAGTGATAACT	59.254	43.478	0.00	0.00	0.00	2.24
3542	6210	3.746492	AGGCAAAACAGACGAGTGATAAC	59.254	43.478	0.00	0.00	0.00	1.89
3543	6211	3.994392	GAGGCAAAACAGACGAGTGATAA	59.006	43.478	0.00	0.00	0.00	1.75
3550	6218	2.254546	ACATGAGGCAAAACAGACGA	57.745	45.000	0.00	0.00	0.00	4.20
3555	6223	4.640201	GGAGCTATTACATGAGGCAAAACA	59.360	41.667	0.00	0.00	0.00	2.83
3560	6228	2.634940	GAGGGAGCTATTACATGAGGCA	59.365	50.000	0.00	0.00	0.00	4.75
3561	6229	2.027653	GGAGGGAGCTATTACATGAGGC	60.028	54.545	0.00	0.00	0.00	4.70
3564	6232	3.242867	CTGGGAGGGAGCTATTACATGA	58.757	50.000	0.00	0.00	0.00	3.07
3565	6233	2.975489	ACTGGGAGGGAGCTATTACATG	59.025	50.000	0.00	0.00	0.00	3.21

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.