Multiple sequence alignment - TraesCS2A01G016200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G016200 chr2A 100.000 2956 0 0 1 2956 7515256 7512301 0.000000e+00 5459.0
1 TraesCS2A01G016200 chr2A 80.932 1159 183 20 885 2013 8627801 8628951 0.000000e+00 881.0
2 TraesCS2A01G016200 chr2A 85.153 815 119 2 850 1663 8631290 8632103 0.000000e+00 833.0
3 TraesCS2A01G016200 chr2A 90.331 393 37 1 162 553 9122098 9121706 5.650000e-142 514.0
4 TraesCS2A01G016200 chr2A 88.599 421 46 2 162 581 9395025 9395444 7.310000e-141 510.0
5 TraesCS2A01G016200 chr2A 88.124 421 48 2 162 581 9847502 9847921 1.580000e-137 499.0
6 TraesCS2A01G016200 chr2A 86.014 429 55 3 159 584 8630855 8631281 3.470000e-124 455.0
7 TraesCS2A01G016200 chr2A 96.212 264 9 1 589 851 763842800 763843063 5.850000e-117 431.0
8 TraesCS2A01G016200 chr2A 96.296 135 5 0 2588 2722 7513626 7513492 3.830000e-54 222.0
9 TraesCS2A01G016200 chr2D 97.018 1006 30 0 850 1855 8479011 8478006 0.000000e+00 1692.0
10 TraesCS2A01G016200 chr2D 81.804 1297 189 27 849 2113 9588623 9589904 0.000000e+00 1044.0
11 TraesCS2A01G016200 chr2D 82.244 1132 160 22 893 1994 8671072 8672192 0.000000e+00 939.0
12 TraesCS2A01G016200 chr2D 81.002 1158 184 19 885 2013 9371892 9373042 0.000000e+00 887.0
13 TraesCS2A01G016200 chr2D 85.750 807 115 0 857 1663 9252370 9253176 0.000000e+00 854.0
14 TraesCS2A01G016200 chr2D 84.275 814 126 2 849 1661 9380776 9381588 0.000000e+00 793.0
15 TraesCS2A01G016200 chr2D 84.137 788 123 2 877 1663 9752840 9752054 0.000000e+00 761.0
16 TraesCS2A01G016200 chr2D 94.253 435 18 2 162 593 8479440 8479010 0.000000e+00 658.0
17 TraesCS2A01G016200 chr2D 96.403 139 5 0 2588 2726 8478230 8478092 2.290000e-56 230.0
18 TraesCS2A01G016200 chr2D 95.238 63 3 0 2528 2590 8478452 8478390 1.870000e-17 100.0
19 TraesCS2A01G016200 chr2B 89.148 1244 125 10 850 2088 11226101 11224863 0.000000e+00 1541.0
20 TraesCS2A01G016200 chr2B 81.245 1269 203 26 849 2089 12942756 12944017 0.000000e+00 992.0
21 TraesCS2A01G016200 chr2B 80.404 1286 208 27 878 2128 11517941 11516665 0.000000e+00 939.0
22 TraesCS2A01G016200 chr2B 80.789 1166 191 21 878 2014 768806625 768805464 0.000000e+00 881.0
23 TraesCS2A01G016200 chr2B 85.749 814 116 0 850 1663 11724941 11724128 0.000000e+00 861.0
24 TraesCS2A01G016200 chr2B 95.370 432 17 1 162 593 11226528 11226100 0.000000e+00 684.0
25 TraesCS2A01G016200 chr2B 87.171 608 54 15 1 593 11173290 11172692 0.000000e+00 669.0
26 TraesCS2A01G016200 chr2B 87.371 483 45 10 2115 2590 11224693 11224220 9.320000e-150 540.0
27 TraesCS2A01G016200 chr2B 85.847 431 57 3 162 590 13180985 13180557 3.470000e-124 455.0
28 TraesCS2A01G016200 chr2B 86.386 404 54 1 174 577 13131617 13131215 9.730000e-120 440.0
29 TraesCS2A01G016200 chr2B 95.489 133 6 0 2594 2726 11224054 11223922 2.310000e-51 213.0
30 TraesCS2A01G016200 chr2B 92.647 136 10 0 2590 2725 11225318 11225183 2.320000e-46 196.0
31 TraesCS2A01G016200 chr2B 89.320 103 8 3 2849 2951 355163132 355163231 3.090000e-25 126.0
32 TraesCS2A01G016200 chr2B 92.135 89 3 3 1 87 11226700 11226614 4.000000e-24 122.0
33 TraesCS2A01G016200 chr2B 93.651 63 4 0 2528 2590 11172143 11172081 8.720000e-16 95.3
34 TraesCS2A01G016200 chr2B 88.525 61 4 2 2029 2088 11174922 11174864 1.470000e-08 71.3
35 TraesCS2A01G016200 chr2B 100.000 33 0 0 133 165 11173202 11173170 8.850000e-06 62.1
36 TraesCS2A01G016200 chr2B 100.000 33 0 0 133 165 11226612 11226580 8.850000e-06 62.1
37 TraesCS2A01G016200 chr4D 82.158 1177 179 22 849 1998 464204938 464206110 0.000000e+00 981.0
38 TraesCS2A01G016200 chr4B 81.024 1191 183 24 849 2012 580356451 580357625 0.000000e+00 907.0
39 TraesCS2A01G016200 chr3A 96.992 266 7 1 591 855 474832822 474832557 2.090000e-121 446.0
40 TraesCS2A01G016200 chr5A 96.310 271 7 3 591 859 104620926 104621195 2.700000e-120 442.0
41 TraesCS2A01G016200 chr1A 96.552 261 8 1 592 851 405459661 405459921 5.850000e-117 431.0
42 TraesCS2A01G016200 chr1A 95.489 266 11 1 592 856 515769139 515768874 9.790000e-115 424.0
43 TraesCS2A01G016200 chr7A 95.849 265 10 1 592 855 643222595 643222331 7.570000e-116 427.0
44 TraesCS2A01G016200 chr7A 96.183 262 9 1 591 851 653720942 653720681 7.570000e-116 427.0
45 TraesCS2A01G016200 chr7A 99.074 108 1 0 2849 2956 427544742 427544849 8.360000e-46 195.0
46 TraesCS2A01G016200 chr6A 96.183 262 8 2 592 852 448411573 448411313 7.570000e-116 427.0
47 TraesCS2A01G016200 chr4A 94.872 273 13 1 591 862 170275617 170275889 2.720000e-115 425.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G016200 chr2A 7512301 7515256 2955 True 2840.500000 5459 98.148000 1 2956 2 chr2A.!!$R2 2955
1 TraesCS2A01G016200 chr2A 8627801 8632103 4302 False 723.000000 881 84.033000 159 2013 3 chr2A.!!$F4 1854
2 TraesCS2A01G016200 chr2D 9588623 9589904 1281 False 1044.000000 1044 81.804000 849 2113 1 chr2D.!!$F5 1264
3 TraesCS2A01G016200 chr2D 8671072 8672192 1120 False 939.000000 939 82.244000 893 1994 1 chr2D.!!$F1 1101
4 TraesCS2A01G016200 chr2D 9371892 9373042 1150 False 887.000000 887 81.002000 885 2013 1 chr2D.!!$F3 1128
5 TraesCS2A01G016200 chr2D 9252370 9253176 806 False 854.000000 854 85.750000 857 1663 1 chr2D.!!$F2 806
6 TraesCS2A01G016200 chr2D 9380776 9381588 812 False 793.000000 793 84.275000 849 1661 1 chr2D.!!$F4 812
7 TraesCS2A01G016200 chr2D 9752054 9752840 786 True 761.000000 761 84.137000 877 1663 1 chr2D.!!$R1 786
8 TraesCS2A01G016200 chr2D 8478006 8479440 1434 True 670.000000 1692 95.728000 162 2726 4 chr2D.!!$R2 2564
9 TraesCS2A01G016200 chr2B 12942756 12944017 1261 False 992.000000 992 81.245000 849 2089 1 chr2B.!!$F1 1240
10 TraesCS2A01G016200 chr2B 11516665 11517941 1276 True 939.000000 939 80.404000 878 2128 1 chr2B.!!$R1 1250
11 TraesCS2A01G016200 chr2B 768805464 768806625 1161 True 881.000000 881 80.789000 878 2014 1 chr2B.!!$R5 1136
12 TraesCS2A01G016200 chr2B 11724128 11724941 813 True 861.000000 861 85.749000 850 1663 1 chr2B.!!$R2 813
13 TraesCS2A01G016200 chr2B 11223922 11226700 2778 True 479.728571 1541 93.165714 1 2726 7 chr2B.!!$R7 2725
14 TraesCS2A01G016200 chr2B 11172081 11174922 2841 True 224.425000 669 92.336750 1 2590 4 chr2B.!!$R6 2589
15 TraesCS2A01G016200 chr4D 464204938 464206110 1172 False 981.000000 981 82.158000 849 1998 1 chr4D.!!$F1 1149
16 TraesCS2A01G016200 chr4B 580356451 580357625 1174 False 907.000000 907 81.024000 849 2012 1 chr4B.!!$F1 1163

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
479 3437 0.456824 TGCAGCTTAAGACGCTCTCG 60.457 55.000 6.67 0.0 42.43 4.04 F
555 3513 1.005630 GACAGTGCTGGCTTCGACT 60.006 57.895 4.11 0.0 35.21 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1671 4656 1.032114 GGTGGATGCCCTTGCTGTAC 61.032 60.0 0.0 0.0 38.71 2.90 R
2516 5685 0.250553 TTGGTTTCAGTGCCCCGTAG 60.251 55.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 1734 4.664688 AAAAATCTCCCATCCACAGTCT 57.335 40.909 0.00 0.00 0.00 3.24
103 1736 5.365021 AAAATCTCCCATCCACAGTCTAG 57.635 43.478 0.00 0.00 0.00 2.43
105 1738 3.019799 TCTCCCATCCACAGTCTAGAC 57.980 52.381 15.41 15.41 0.00 2.59
106 1739 2.311841 TCTCCCATCCACAGTCTAGACA 59.688 50.000 24.44 3.92 0.00 3.41
107 1740 3.099905 CTCCCATCCACAGTCTAGACAA 58.900 50.000 24.44 5.18 0.00 3.18
108 1741 3.099905 TCCCATCCACAGTCTAGACAAG 58.900 50.000 24.44 17.83 0.00 3.16
109 1742 2.834549 CCCATCCACAGTCTAGACAAGT 59.165 50.000 24.44 18.45 0.00 3.16
111 1744 4.651503 CCCATCCACAGTCTAGACAAGTAT 59.348 45.833 24.44 10.79 0.00 2.12
112 1745 5.129485 CCCATCCACAGTCTAGACAAGTATT 59.871 44.000 24.44 8.02 0.00 1.89
114 1747 6.536582 CCATCCACAGTCTAGACAAGTATTTG 59.463 42.308 24.44 13.96 40.24 2.32
128 1761 6.970484 ACAAGTATTTGTCAATGGAAGACAC 58.030 36.000 0.00 0.00 44.00 3.67
130 1763 7.936847 ACAAGTATTTGTCAATGGAAGACACTA 59.063 33.333 0.00 0.00 44.00 2.74
131 1764 8.446273 CAAGTATTTGTCAATGGAAGACACTAG 58.554 37.037 0.00 0.00 44.95 2.57
243 3195 2.279069 CCAGAGACCGACCAGCAGT 61.279 63.158 0.00 0.00 0.00 4.40
326 3278 5.219739 AGCCAGTTCATCTCCTTCCTAATA 58.780 41.667 0.00 0.00 0.00 0.98
361 3313 1.625417 TTGAGCCATGCCCGATCAGA 61.625 55.000 0.00 0.00 0.00 3.27
362 3314 1.301558 GAGCCATGCCCGATCAGAG 60.302 63.158 0.00 0.00 0.00 3.35
363 3315 2.281345 GCCATGCCCGATCAGAGG 60.281 66.667 0.00 0.00 0.00 3.69
370 3328 1.753368 GCCCGATCAGAGGAGAAGGG 61.753 65.000 0.00 0.00 40.44 3.95
479 3437 0.456824 TGCAGCTTAAGACGCTCTCG 60.457 55.000 6.67 0.00 42.43 4.04
545 3503 1.495579 ATGCCCTCCAAGACAGTGCT 61.496 55.000 0.00 0.00 0.00 4.40
555 3513 1.005630 GACAGTGCTGGCTTCGACT 60.006 57.895 4.11 0.00 35.21 4.18
591 3549 6.777213 ACGACTCATCTAGGAACAACTTAT 57.223 37.500 0.00 0.00 0.00 1.73
592 3550 7.876936 ACGACTCATCTAGGAACAACTTATA 57.123 36.000 0.00 0.00 0.00 0.98
593 3551 7.705214 ACGACTCATCTAGGAACAACTTATAC 58.295 38.462 0.00 0.00 0.00 1.47
594 3552 7.556996 ACGACTCATCTAGGAACAACTTATACT 59.443 37.037 0.00 0.00 0.00 2.12
595 3553 8.071368 CGACTCATCTAGGAACAACTTATACTC 58.929 40.741 0.00 0.00 0.00 2.59
596 3554 8.240267 ACTCATCTAGGAACAACTTATACTCC 57.760 38.462 0.00 0.00 0.00 3.85
597 3555 7.288158 ACTCATCTAGGAACAACTTATACTCCC 59.712 40.741 0.00 0.00 0.00 4.30
598 3556 7.363031 TCATCTAGGAACAACTTATACTCCCT 58.637 38.462 0.00 0.00 0.00 4.20
599 3557 7.506261 TCATCTAGGAACAACTTATACTCCCTC 59.494 40.741 0.00 0.00 0.00 4.30
600 3558 6.134754 TCTAGGAACAACTTATACTCCCTCC 58.865 44.000 0.00 0.00 0.00 4.30
601 3559 3.705072 AGGAACAACTTATACTCCCTCCG 59.295 47.826 0.00 0.00 0.00 4.63
602 3560 3.181468 GGAACAACTTATACTCCCTCCGG 60.181 52.174 0.00 0.00 0.00 5.14
603 3561 3.111741 ACAACTTATACTCCCTCCGGT 57.888 47.619 0.00 0.00 0.00 5.28
604 3562 3.029570 ACAACTTATACTCCCTCCGGTC 58.970 50.000 0.00 0.00 0.00 4.79
605 3563 2.364647 CAACTTATACTCCCTCCGGTCC 59.635 54.545 0.00 0.00 0.00 4.46
606 3564 1.858246 ACTTATACTCCCTCCGGTCCT 59.142 52.381 0.00 0.00 0.00 3.85
607 3565 2.246849 ACTTATACTCCCTCCGGTCCTT 59.753 50.000 0.00 0.00 0.00 3.36
608 3566 3.306613 CTTATACTCCCTCCGGTCCTTT 58.693 50.000 0.00 0.00 0.00 3.11
609 3567 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
610 3568 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
611 3569 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
612 3570 1.907255 ACTCCCTCCGGTCCTTTTTAG 59.093 52.381 0.00 0.00 0.00 1.85
613 3571 1.907255 CTCCCTCCGGTCCTTTTTAGT 59.093 52.381 0.00 0.00 0.00 2.24
614 3572 2.305052 CTCCCTCCGGTCCTTTTTAGTT 59.695 50.000 0.00 0.00 0.00 2.24
615 3573 2.712627 TCCCTCCGGTCCTTTTTAGTTT 59.287 45.455 0.00 0.00 0.00 2.66
616 3574 2.817844 CCCTCCGGTCCTTTTTAGTTTG 59.182 50.000 0.00 0.00 0.00 2.93
617 3575 2.228103 CCTCCGGTCCTTTTTAGTTTGC 59.772 50.000 0.00 0.00 0.00 3.68
618 3576 2.882137 CTCCGGTCCTTTTTAGTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
619 3577 3.492337 TCCGGTCCTTTTTAGTTTGCAT 58.508 40.909 0.00 0.00 0.00 3.96
620 3578 4.653868 TCCGGTCCTTTTTAGTTTGCATA 58.346 39.130 0.00 0.00 0.00 3.14
621 3579 5.258051 TCCGGTCCTTTTTAGTTTGCATAT 58.742 37.500 0.00 0.00 0.00 1.78
622 3580 6.416415 TCCGGTCCTTTTTAGTTTGCATATA 58.584 36.000 0.00 0.00 0.00 0.86
623 3581 6.885376 TCCGGTCCTTTTTAGTTTGCATATAA 59.115 34.615 0.00 0.00 0.00 0.98
624 3582 7.066525 TCCGGTCCTTTTTAGTTTGCATATAAG 59.933 37.037 0.00 0.00 0.00 1.73
625 3583 7.066525 CCGGTCCTTTTTAGTTTGCATATAAGA 59.933 37.037 0.00 0.00 0.00 2.10
626 3584 8.621286 CGGTCCTTTTTAGTTTGCATATAAGAT 58.379 33.333 0.00 0.00 0.00 2.40
637 3595 9.236006 AGTTTGCATATAAGATTTGACTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
638 3596 9.495754 GTTTGCATATAAGATTTGACTGAAGTC 57.504 33.333 3.41 3.41 44.97 3.01
647 3605 3.896317 GACTGAAGTCAAGCCTCGT 57.104 52.632 5.58 0.00 44.18 4.18
649 3607 3.299340 GACTGAAGTCAAGCCTCGTAA 57.701 47.619 5.58 0.00 44.18 3.18
650 3608 3.650139 GACTGAAGTCAAGCCTCGTAAA 58.350 45.455 5.58 0.00 44.18 2.01
651 3609 4.056050 GACTGAAGTCAAGCCTCGTAAAA 58.944 43.478 5.58 0.00 44.18 1.52
652 3610 4.642429 ACTGAAGTCAAGCCTCGTAAAAT 58.358 39.130 0.00 0.00 0.00 1.82
653 3611 5.063880 ACTGAAGTCAAGCCTCGTAAAATT 58.936 37.500 0.00 0.00 0.00 1.82
654 3612 5.531287 ACTGAAGTCAAGCCTCGTAAAATTT 59.469 36.000 0.00 0.00 0.00 1.82
655 3613 5.757886 TGAAGTCAAGCCTCGTAAAATTTG 58.242 37.500 0.00 0.00 0.00 2.32
656 3614 5.529430 TGAAGTCAAGCCTCGTAAAATTTGA 59.471 36.000 0.00 0.00 0.00 2.69
657 3615 5.358298 AGTCAAGCCTCGTAAAATTTGAC 57.642 39.130 6.98 6.98 42.72 3.18
658 3616 4.215613 AGTCAAGCCTCGTAAAATTTGACC 59.784 41.667 10.51 0.00 43.15 4.02
659 3617 4.023536 GTCAAGCCTCGTAAAATTTGACCA 60.024 41.667 0.00 0.00 38.79 4.02
660 3618 4.580995 TCAAGCCTCGTAAAATTTGACCAA 59.419 37.500 0.00 0.00 0.00 3.67
661 3619 4.499037 AGCCTCGTAAAATTTGACCAAC 57.501 40.909 0.00 0.00 0.00 3.77
662 3620 4.142038 AGCCTCGTAAAATTTGACCAACT 58.858 39.130 0.00 0.00 0.00 3.16
663 3621 4.583073 AGCCTCGTAAAATTTGACCAACTT 59.417 37.500 0.00 0.00 0.00 2.66
664 3622 5.068591 AGCCTCGTAAAATTTGACCAACTTT 59.931 36.000 0.00 0.00 0.00 2.66
665 3623 5.751509 GCCTCGTAAAATTTGACCAACTTTT 59.248 36.000 12.96 12.96 37.12 2.27
666 3624 6.256975 GCCTCGTAAAATTTGACCAACTTTTT 59.743 34.615 13.42 10.19 35.63 1.94
667 3625 7.435784 GCCTCGTAAAATTTGACCAACTTTTTA 59.564 33.333 13.42 9.47 35.63 1.52
668 3626 8.964150 CCTCGTAAAATTTGACCAACTTTTTAG 58.036 33.333 13.42 9.53 35.63 1.85
669 3627 9.724839 CTCGTAAAATTTGACCAACTTTTTAGA 57.275 29.630 13.42 12.06 35.63 2.10
695 3653 8.945481 AAAAATGTCAACATTCACAATCTGAA 57.055 26.923 8.72 0.00 45.06 3.02
696 3654 8.945481 AAAATGTCAACATTCACAATCTGAAA 57.055 26.923 8.72 0.00 45.06 2.69
697 3655 9.550406 AAAATGTCAACATTCACAATCTGAAAT 57.450 25.926 8.72 0.00 45.06 2.17
698 3656 8.752766 AATGTCAACATTCACAATCTGAAATC 57.247 30.769 2.53 0.00 42.45 2.17
699 3657 7.274603 TGTCAACATTCACAATCTGAAATCA 57.725 32.000 0.00 0.00 42.37 2.57
700 3658 7.714703 TGTCAACATTCACAATCTGAAATCAA 58.285 30.769 0.00 0.00 42.37 2.57
701 3659 8.361889 TGTCAACATTCACAATCTGAAATCAAT 58.638 29.630 0.00 0.00 42.37 2.57
702 3660 9.844790 GTCAACATTCACAATCTGAAATCAATA 57.155 29.630 0.00 0.00 42.37 1.90
703 3661 9.844790 TCAACATTCACAATCTGAAATCAATAC 57.155 29.630 0.00 0.00 42.37 1.89
704 3662 9.079833 CAACATTCACAATCTGAAATCAATACC 57.920 33.333 0.00 0.00 42.37 2.73
705 3663 8.352137 ACATTCACAATCTGAAATCAATACCA 57.648 30.769 0.00 0.00 42.37 3.25
706 3664 8.246180 ACATTCACAATCTGAAATCAATACCAC 58.754 33.333 0.00 0.00 42.37 4.16
707 3665 8.464404 CATTCACAATCTGAAATCAATACCACT 58.536 33.333 0.00 0.00 42.37 4.00
708 3666 9.685276 ATTCACAATCTGAAATCAATACCACTA 57.315 29.630 0.00 0.00 42.37 2.74
709 3667 8.722480 TCACAATCTGAAATCAATACCACTAG 57.278 34.615 0.00 0.00 0.00 2.57
710 3668 8.539544 TCACAATCTGAAATCAATACCACTAGA 58.460 33.333 0.00 0.00 0.00 2.43
711 3669 9.334947 CACAATCTGAAATCAATACCACTAGAT 57.665 33.333 0.00 0.00 0.00 1.98
712 3670 9.334947 ACAATCTGAAATCAATACCACTAGATG 57.665 33.333 0.00 0.00 0.00 2.90
713 3671 9.334947 CAATCTGAAATCAATACCACTAGATGT 57.665 33.333 0.00 0.00 0.00 3.06
714 3672 8.899427 ATCTGAAATCAATACCACTAGATGTG 57.101 34.615 0.00 0.00 45.80 3.21
715 3673 7.851228 TCTGAAATCAATACCACTAGATGTGT 58.149 34.615 0.00 0.00 44.81 3.72
716 3674 7.981789 TCTGAAATCAATACCACTAGATGTGTC 59.018 37.037 0.00 0.00 44.81 3.67
717 3675 7.619965 TGAAATCAATACCACTAGATGTGTCA 58.380 34.615 0.00 0.00 44.81 3.58
718 3676 8.267183 TGAAATCAATACCACTAGATGTGTCAT 58.733 33.333 0.00 0.00 44.81 3.06
719 3677 8.442632 AAATCAATACCACTAGATGTGTCATG 57.557 34.615 0.00 0.00 44.81 3.07
720 3678 6.790232 TCAATACCACTAGATGTGTCATGA 57.210 37.500 0.00 0.00 44.81 3.07
721 3679 6.573434 TCAATACCACTAGATGTGTCATGAC 58.427 40.000 19.27 19.27 44.81 3.06
722 3680 6.381133 TCAATACCACTAGATGTGTCATGACT 59.619 38.462 25.55 6.60 44.81 3.41
723 3681 6.798427 ATACCACTAGATGTGTCATGACTT 57.202 37.500 25.55 11.29 44.81 3.01
724 3682 7.898014 ATACCACTAGATGTGTCATGACTTA 57.102 36.000 25.55 15.01 44.81 2.24
725 3683 6.605471 ACCACTAGATGTGTCATGACTTAA 57.395 37.500 25.55 12.04 44.81 1.85
726 3684 7.004555 ACCACTAGATGTGTCATGACTTAAA 57.995 36.000 25.55 9.66 44.81 1.52
727 3685 7.099764 ACCACTAGATGTGTCATGACTTAAAG 58.900 38.462 25.55 16.54 44.81 1.85
728 3686 7.099764 CCACTAGATGTGTCATGACTTAAAGT 58.900 38.462 25.55 17.09 44.81 2.66
729 3687 7.604164 CCACTAGATGTGTCATGACTTAAAGTT 59.396 37.037 25.55 8.77 44.81 2.66
730 3688 8.993121 CACTAGATGTGTCATGACTTAAAGTTT 58.007 33.333 25.55 7.45 41.53 2.66
731 3689 9.209175 ACTAGATGTGTCATGACTTAAAGTTTC 57.791 33.333 25.55 11.27 0.00 2.78
732 3690 9.208022 CTAGATGTGTCATGACTTAAAGTTTCA 57.792 33.333 25.55 11.05 0.00 2.69
733 3691 8.627208 AGATGTGTCATGACTTAAAGTTTCAT 57.373 30.769 25.55 14.42 0.00 2.57
734 3692 9.725019 AGATGTGTCATGACTTAAAGTTTCATA 57.275 29.630 25.55 1.27 0.00 2.15
762 3720 8.876275 ATATAACTTTAGCATGGCAAATGTTG 57.124 30.769 9.77 0.00 0.00 3.33
763 3721 4.870123 ACTTTAGCATGGCAAATGTTGA 57.130 36.364 0.00 0.00 0.00 3.18
764 3722 5.410355 ACTTTAGCATGGCAAATGTTGAT 57.590 34.783 0.00 0.00 0.00 2.57
765 3723 6.528537 ACTTTAGCATGGCAAATGTTGATA 57.471 33.333 0.00 0.00 0.00 2.15
766 3724 7.116075 ACTTTAGCATGGCAAATGTTGATAT 57.884 32.000 0.00 0.00 0.00 1.63
767 3725 7.558604 ACTTTAGCATGGCAAATGTTGATATT 58.441 30.769 0.00 0.00 0.00 1.28
768 3726 8.042515 ACTTTAGCATGGCAAATGTTGATATTT 58.957 29.630 0.00 0.00 0.00 1.40
769 3727 8.789825 TTTAGCATGGCAAATGTTGATATTTT 57.210 26.923 0.00 0.00 0.00 1.82
770 3728 8.789825 TTAGCATGGCAAATGTTGATATTTTT 57.210 26.923 0.00 0.00 0.00 1.94
799 3757 9.537848 GTATAAATACGGTCAAACTTTGTGAAG 57.462 33.333 1.44 0.00 38.87 3.02
825 3783 9.928236 GTTTGACTTCAGAGAATTCTAATATGC 57.072 33.333 8.25 0.00 30.73 3.14
826 3784 9.671279 TTTGACTTCAGAGAATTCTAATATGCA 57.329 29.630 8.25 0.00 30.73 3.96
827 3785 8.883954 TGACTTCAGAGAATTCTAATATGCAG 57.116 34.615 8.25 7.58 30.73 4.41
828 3786 8.699130 TGACTTCAGAGAATTCTAATATGCAGA 58.301 33.333 8.25 0.00 30.73 4.26
829 3787 9.195411 GACTTCAGAGAATTCTAATATGCAGAG 57.805 37.037 8.25 6.79 30.73 3.35
830 3788 8.703743 ACTTCAGAGAATTCTAATATGCAGAGT 58.296 33.333 8.25 7.29 30.73 3.24
840 3798 8.732746 TTCTAATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
841 3799 6.984474 TCTAATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
842 3800 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
843 3801 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
844 3802 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
1085 4043 1.234821 TCTTGTTGCAGCGTAAAGGG 58.765 50.000 0.00 0.00 0.00 3.95
1133 4091 2.029918 TCTTCCGATCATAGGTGATGCG 60.030 50.000 0.00 0.71 44.96 4.73
1152 4110 2.000447 CGACAACGGGGAAGAAATCTC 59.000 52.381 0.00 0.00 35.72 2.75
1206 4164 1.333619 GCTCGAGCTTCTCCTCTGTAG 59.666 57.143 29.88 0.00 38.21 2.74
1424 4385 5.010922 TGGATCAGTGAAACCAATTTTCCTG 59.989 40.000 16.61 8.04 42.80 3.86
1434 4395 3.966665 ACCAATTTTCCTGAGCCTTTTGA 59.033 39.130 0.00 0.00 0.00 2.69
1671 4656 1.535462 CTAACAGAAACCACAAGGCCG 59.465 52.381 0.00 0.00 39.06 6.13
1690 4675 1.032114 GTACAGCAAGGGCATCCACC 61.032 60.000 0.00 0.00 44.61 4.61
1738 4723 5.994054 GTCCACTTAGCATGACACATCATAT 59.006 40.000 0.00 0.00 44.13 1.78
1785 4770 3.743714 CCAAGTGTGACATTGGGGA 57.256 52.632 14.84 0.00 41.92 4.81
1793 4778 4.281688 AGTGTGACATTGGGGAAAATTCTG 59.718 41.667 0.00 0.00 0.00 3.02
1883 4868 9.806203 CCTCATAAATCATTTGCTCATTTTGTA 57.194 29.630 0.00 0.00 0.00 2.41
1957 4948 4.116961 CGACGAGGAGTGCCAATTTAATA 58.883 43.478 0.00 0.00 36.29 0.98
1971 4963 9.651913 TGCCAATTTAATATTTTTCAGAACTCC 57.348 29.630 0.00 0.00 0.00 3.85
1986 4978 5.473846 TCAGAACTCCTGTAGTGTAACTCTG 59.526 44.000 0.00 0.00 43.75 3.35
2028 5025 6.524734 ACATGACAAACTGTTCTGTCTATGA 58.475 36.000 26.43 15.93 42.06 2.15
2113 5275 5.614324 TTTATCAGATCCGACAATCCACT 57.386 39.130 0.00 0.00 0.00 4.00
2114 5276 6.724893 TTTATCAGATCCGACAATCCACTA 57.275 37.500 0.00 0.00 0.00 2.74
2120 5282 3.260475 TCCGACAATCCACTACCATTG 57.740 47.619 0.00 0.00 36.28 2.82
2123 5285 3.374058 CCGACAATCCACTACCATTGAAC 59.626 47.826 0.00 0.00 34.60 3.18
2129 5291 6.207417 ACAATCCACTACCATTGAACTTCTTG 59.793 38.462 0.00 0.00 34.60 3.02
2130 5292 4.651778 TCCACTACCATTGAACTTCTTGG 58.348 43.478 8.84 8.84 35.31 3.61
2137 5299 5.556915 ACCATTGAACTTCTTGGATAACGA 58.443 37.500 14.67 0.00 33.36 3.85
2144 5306 5.668558 ACTTCTTGGATAACGAACAACAC 57.331 39.130 0.00 0.00 0.00 3.32
2153 5315 6.370442 TGGATAACGAACAACACCATCTAAAG 59.630 38.462 0.00 0.00 0.00 1.85
2167 5329 4.641989 CCATCTAAAGTGGCAGTTGCTAAT 59.358 41.667 8.61 0.00 41.70 1.73
2177 5339 2.484594 GCAGTTGCTAATCCTCCTCCTC 60.485 54.545 0.00 0.00 38.21 3.71
2196 5358 6.354794 TCCTCAGTAGATCTAGCTAGTCTC 57.645 45.833 20.10 16.81 0.00 3.36
2229 5392 6.152661 TGGCTTACTAATGAAATGAAACAGGG 59.847 38.462 0.00 0.00 0.00 4.45
2231 5394 7.068716 GGCTTACTAATGAAATGAAACAGGGAT 59.931 37.037 0.00 0.00 0.00 3.85
2236 5399 9.039165 ACTAATGAAATGAAACAGGGATGAAAT 57.961 29.630 0.00 0.00 0.00 2.17
2257 5420 4.637483 TTGACAAGAAAGCAAAGTCTGG 57.363 40.909 0.00 0.00 0.00 3.86
2289 5456 7.943952 GCATTTTGCTACACTAGATCGTATAG 58.056 38.462 0.00 0.00 40.96 1.31
2293 5460 5.314529 TGCTACACTAGATCGTATAGGCTT 58.685 41.667 0.00 0.00 0.00 4.35
2307 5474 1.549203 AGGCTTTGCAATCGACCAAT 58.451 45.000 0.00 0.00 0.00 3.16
2311 5478 2.663119 GCTTTGCAATCGACCAATCAAC 59.337 45.455 0.00 0.00 0.00 3.18
2313 5480 3.998099 TTGCAATCGACCAATCAACAA 57.002 38.095 0.00 0.00 0.00 2.83
2314 5481 3.998099 TGCAATCGACCAATCAACAAA 57.002 38.095 0.00 0.00 0.00 2.83
2315 5482 3.899734 TGCAATCGACCAATCAACAAAG 58.100 40.909 0.00 0.00 0.00 2.77
2323 5490 5.476599 TCGACCAATCAACAAAGAATTCCAT 59.523 36.000 0.65 0.00 0.00 3.41
2340 5507 4.694760 TCCATGGTAACCATCTCTGATG 57.305 45.455 12.58 0.92 43.15 3.07
2343 5510 5.070446 TCCATGGTAACCATCTCTGATGTAC 59.930 44.000 12.58 4.08 43.15 2.90
2344 5511 5.300752 CATGGTAACCATCTCTGATGTACC 58.699 45.833 14.96 14.96 43.15 3.34
2379 5546 6.662755 ACATTTGCAGTTATAGGATCCTTCA 58.337 36.000 22.03 2.35 0.00 3.02
2380 5547 6.543831 ACATTTGCAGTTATAGGATCCTTCAC 59.456 38.462 22.03 14.02 0.00 3.18
2412 5579 3.056304 CGCCCACAAAACCAGTAAAATG 58.944 45.455 0.00 0.00 0.00 2.32
2415 5582 4.878971 GCCCACAAAACCAGTAAAATGTTT 59.121 37.500 0.00 0.00 33.86 2.83
2474 5643 4.658063 AGATTCAAATAACCGGTGAACCA 58.342 39.130 8.52 0.00 34.28 3.67
2507 5676 4.849310 GGGATTACCGCGGCTGCA 62.849 66.667 28.58 6.87 42.97 4.41
2509 5678 2.817834 GATTACCGCGGCTGCACA 60.818 61.111 28.58 2.57 42.97 4.57
2510 5679 3.095898 GATTACCGCGGCTGCACAC 62.096 63.158 28.58 6.78 42.97 3.82
2528 5697 1.522355 CTGCATCTACGGGGCACTG 60.522 63.158 0.00 0.00 33.34 3.66
2534 5703 1.122632 TCTACGGGGCACTGAAACCA 61.123 55.000 0.00 0.00 0.00 3.67
2535 5704 0.250553 CTACGGGGCACTGAAACCAA 60.251 55.000 0.00 0.00 0.00 3.67
2536 5705 0.402504 TACGGGGCACTGAAACCAAT 59.597 50.000 0.00 0.00 0.00 3.16
2537 5706 0.469144 ACGGGGCACTGAAACCAATT 60.469 50.000 0.00 0.00 0.00 2.32
2538 5707 0.678950 CGGGGCACTGAAACCAATTT 59.321 50.000 0.00 0.00 0.00 1.82
2539 5708 1.069978 CGGGGCACTGAAACCAATTTT 59.930 47.619 0.00 0.00 0.00 1.82
2540 5709 2.766313 GGGGCACTGAAACCAATTTTC 58.234 47.619 0.00 0.00 43.63 2.29
2541 5710 2.549992 GGGGCACTGAAACCAATTTTCC 60.550 50.000 0.00 0.00 42.80 3.13
2542 5711 2.368548 GGGCACTGAAACCAATTTTCCT 59.631 45.455 0.00 0.00 42.80 3.36
2554 5723 4.767409 ACCAATTTTCCTAAGCCTTCTGTC 59.233 41.667 0.00 0.00 0.00 3.51
2562 5731 0.039074 AAGCCTTCTGTCAGACGACG 60.039 55.000 7.88 0.00 45.80 5.12
2590 5759 4.985538 AGGTACATTTTCAAGAAGCTGGA 58.014 39.130 0.00 0.00 0.00 3.86
2591 5760 4.762251 AGGTACATTTTCAAGAAGCTGGAC 59.238 41.667 0.00 2.24 0.00 4.02
2592 5761 3.904136 ACATTTTCAAGAAGCTGGACG 57.096 42.857 0.00 0.00 0.00 4.79
2646 5977 1.027357 CATACAGCAAGGGCATCCAC 58.973 55.000 0.00 0.00 44.61 4.02
2660 5991 2.939103 GCATCCACTGGACATAACAGAC 59.061 50.000 0.00 0.00 39.24 3.51
2665 5996 3.189287 CCACTGGACATAACAGACTTTGC 59.811 47.826 0.00 0.00 39.24 3.68
2677 6008 2.684881 CAGACTTTGCTTTGTGTCCACT 59.315 45.455 0.00 0.00 0.00 4.00
2700 6031 7.642586 CACTTAGCATGACACATCATACAATTG 59.357 37.037 3.24 3.24 44.13 2.32
2722 6053 7.543359 TTGATGTTTCAATCAAGGAGGAATT 57.457 32.000 0.00 0.00 40.72 2.17
2726 6057 5.166398 GTTTCAATCAAGGAGGAATTGCTG 58.834 41.667 3.35 0.00 0.00 4.41
2727 6058 2.756760 TCAATCAAGGAGGAATTGCTGC 59.243 45.455 10.58 10.58 0.00 5.25
2728 6059 2.494471 CAATCAAGGAGGAATTGCTGCA 59.506 45.455 20.08 0.00 0.00 4.41
2729 6060 2.519771 TCAAGGAGGAATTGCTGCAT 57.480 45.000 20.08 5.78 0.00 3.96
2730 6061 2.811410 TCAAGGAGGAATTGCTGCATT 58.189 42.857 20.08 8.87 0.00 3.56
2731 6062 3.966979 TCAAGGAGGAATTGCTGCATTA 58.033 40.909 20.08 0.00 0.00 1.90
2732 6063 3.696051 TCAAGGAGGAATTGCTGCATTAC 59.304 43.478 20.08 1.00 0.00 1.89
2733 6064 3.659183 AGGAGGAATTGCTGCATTACT 57.341 42.857 20.08 6.22 0.00 2.24
2734 6065 4.778213 AGGAGGAATTGCTGCATTACTA 57.222 40.909 20.08 0.00 0.00 1.82
2735 6066 4.712476 AGGAGGAATTGCTGCATTACTAG 58.288 43.478 20.08 0.00 0.00 2.57
2736 6067 3.251972 GGAGGAATTGCTGCATTACTAGC 59.748 47.826 13.59 0.00 40.29 3.42
2737 6068 4.133078 GAGGAATTGCTGCATTACTAGCT 58.867 43.478 3.35 0.00 40.52 3.32
2738 6069 5.296151 AGGAATTGCTGCATTACTAGCTA 57.704 39.130 1.84 0.00 40.52 3.32
2739 6070 5.303971 AGGAATTGCTGCATTACTAGCTAG 58.696 41.667 19.44 19.44 40.52 3.42
2740 6071 5.059833 GGAATTGCTGCATTACTAGCTAGT 58.940 41.667 28.50 28.50 40.52 2.57
2741 6072 6.042093 AGGAATTGCTGCATTACTAGCTAGTA 59.958 38.462 26.36 26.36 40.52 1.82
2742 6073 6.367422 GGAATTGCTGCATTACTAGCTAGTAG 59.633 42.308 27.86 20.80 39.69 2.57
2743 6074 4.244425 TGCTGCATTACTAGCTAGTAGC 57.756 45.455 27.63 27.63 39.69 3.58
2752 6083 4.577246 GCTAGTAGCTGCGGCGCT 62.577 66.667 33.26 15.80 44.37 5.92
2753 6084 2.656651 CTAGTAGCTGCGGCGCTG 60.657 66.667 33.26 31.88 44.37 5.18
2770 6101 3.690745 GCTTGGGAGCTGCAACAT 58.309 55.556 7.79 0.00 45.65 2.71
2771 6102 1.214589 GCTTGGGAGCTGCAACATG 59.785 57.895 7.79 0.34 45.65 3.21
2772 6103 1.214589 CTTGGGAGCTGCAACATGC 59.785 57.895 7.79 0.00 45.29 4.06
2773 6104 1.228644 TTGGGAGCTGCAACATGCT 60.229 52.632 7.79 0.00 45.31 3.79
2776 6107 3.571119 GAGCTGCAACATGCTCGT 58.429 55.556 9.60 0.00 45.31 4.18
2777 6108 1.134075 GAGCTGCAACATGCTCGTG 59.866 57.895 9.60 0.00 45.31 4.35
2778 6109 2.503375 GCTGCAACATGCTCGTGC 60.503 61.111 1.71 1.71 45.31 5.34
2779 6110 2.202260 CTGCAACATGCTCGTGCG 60.202 61.111 4.84 0.00 45.31 5.34
2780 6111 2.664518 TGCAACATGCTCGTGCGA 60.665 55.556 4.84 0.00 45.31 5.10
2781 6112 2.202222 GCAACATGCTCGTGCGAC 60.202 61.111 4.84 0.00 40.96 5.19
2782 6113 2.094539 CAACATGCTCGTGCGACG 59.905 61.111 4.84 2.79 44.19 5.12
2783 6114 3.112075 AACATGCTCGTGCGACGG 61.112 61.111 4.84 0.00 42.81 4.79
2784 6115 3.858868 AACATGCTCGTGCGACGGT 62.859 57.895 4.84 0.00 42.81 4.83
2785 6116 3.842126 CATGCTCGTGCGACGGTG 61.842 66.667 4.84 4.37 42.81 4.94
2812 6143 1.818642 CAGACCTTGGAGGCTTTCAG 58.181 55.000 0.00 0.00 39.63 3.02
2813 6144 0.695347 AGACCTTGGAGGCTTTCAGG 59.305 55.000 5.50 5.50 39.63 3.86
2814 6145 0.962855 GACCTTGGAGGCTTTCAGGC 60.963 60.000 6.70 0.00 39.63 4.85
2828 6159 7.524717 GGCTTTCAGGCTTTGGATATAATAA 57.475 36.000 0.00 0.00 37.85 1.40
2829 6160 8.127150 GGCTTTCAGGCTTTGGATATAATAAT 57.873 34.615 0.00 0.00 37.85 1.28
2830 6161 9.243105 GGCTTTCAGGCTTTGGATATAATAATA 57.757 33.333 0.00 0.00 37.85 0.98
2853 6184 3.981071 TGAGATGACTGGTTGTTAGGG 57.019 47.619 0.00 0.00 0.00 3.53
2854 6185 2.027192 TGAGATGACTGGTTGTTAGGGC 60.027 50.000 0.00 0.00 0.00 5.19
2855 6186 1.985159 AGATGACTGGTTGTTAGGGCA 59.015 47.619 0.00 0.00 0.00 5.36
2856 6187 2.578021 AGATGACTGGTTGTTAGGGCAT 59.422 45.455 0.00 0.00 0.00 4.40
2857 6188 2.489938 TGACTGGTTGTTAGGGCATC 57.510 50.000 0.00 0.00 0.00 3.91
2858 6189 1.985159 TGACTGGTTGTTAGGGCATCT 59.015 47.619 0.00 0.00 0.00 2.90
2859 6190 3.178046 TGACTGGTTGTTAGGGCATCTA 58.822 45.455 0.00 0.00 0.00 1.98
2860 6191 3.055385 TGACTGGTTGTTAGGGCATCTAC 60.055 47.826 0.00 0.00 0.00 2.59
2861 6192 2.910319 ACTGGTTGTTAGGGCATCTACA 59.090 45.455 0.00 0.00 0.00 2.74
2862 6193 3.329520 ACTGGTTGTTAGGGCATCTACAA 59.670 43.478 0.00 0.00 0.00 2.41
2863 6194 4.018415 ACTGGTTGTTAGGGCATCTACAAT 60.018 41.667 3.63 0.00 0.00 2.71
2864 6195 4.269183 TGGTTGTTAGGGCATCTACAATG 58.731 43.478 3.63 0.00 0.00 2.82
2865 6196 3.632145 GGTTGTTAGGGCATCTACAATGG 59.368 47.826 3.63 0.00 0.00 3.16
2866 6197 3.576078 TGTTAGGGCATCTACAATGGG 57.424 47.619 0.00 0.00 0.00 4.00
2867 6198 3.119319 TGTTAGGGCATCTACAATGGGA 58.881 45.455 0.00 0.00 0.00 4.37
2868 6199 3.136443 TGTTAGGGCATCTACAATGGGAG 59.864 47.826 0.00 0.00 0.00 4.30
2869 6200 2.196742 AGGGCATCTACAATGGGAGA 57.803 50.000 0.00 0.00 0.00 3.71
2870 6201 2.711174 AGGGCATCTACAATGGGAGAT 58.289 47.619 0.00 0.00 32.48 2.75
2877 6208 6.981762 CATCTACAATGGGAGATGCTTATC 57.018 41.667 9.51 0.00 41.84 1.75
2878 6209 6.709281 CATCTACAATGGGAGATGCTTATCT 58.291 40.000 9.51 0.00 41.84 1.98
2879 6210 7.845037 CATCTACAATGGGAGATGCTTATCTA 58.155 38.462 9.51 0.00 41.84 1.98
2880 6211 7.473735 TCTACAATGGGAGATGCTTATCTAG 57.526 40.000 0.00 0.00 0.00 2.43
2881 6212 7.241628 TCTACAATGGGAGATGCTTATCTAGA 58.758 38.462 0.00 0.00 0.00 2.43
2882 6213 6.107901 ACAATGGGAGATGCTTATCTAGAC 57.892 41.667 0.00 0.00 0.00 2.59
2883 6214 5.167121 CAATGGGAGATGCTTATCTAGACG 58.833 45.833 0.00 0.00 0.00 4.18
2884 6215 2.558795 TGGGAGATGCTTATCTAGACGC 59.441 50.000 0.00 0.00 0.00 5.19
2885 6216 2.823154 GGGAGATGCTTATCTAGACGCT 59.177 50.000 0.00 0.00 0.00 5.07
2886 6217 3.257127 GGGAGATGCTTATCTAGACGCTT 59.743 47.826 0.00 0.00 0.00 4.68
2887 6218 4.459685 GGGAGATGCTTATCTAGACGCTTA 59.540 45.833 0.00 0.00 0.00 3.09
2888 6219 5.047943 GGGAGATGCTTATCTAGACGCTTAA 60.048 44.000 0.00 0.00 0.00 1.85
2889 6220 6.090129 GGAGATGCTTATCTAGACGCTTAAG 58.910 44.000 0.00 0.00 0.00 1.85
2890 6221 5.465935 AGATGCTTATCTAGACGCTTAAGC 58.534 41.667 21.29 21.29 44.24 3.09
2892 6223 4.611943 TGCTTATCTAGACGCTTAAGCAG 58.388 43.478 24.68 19.99 46.89 4.24
2893 6224 4.338400 TGCTTATCTAGACGCTTAAGCAGA 59.662 41.667 24.68 20.37 46.89 4.26
2894 6225 5.163550 TGCTTATCTAGACGCTTAAGCAGAA 60.164 40.000 24.68 8.88 46.89 3.02
2895 6226 5.749109 GCTTATCTAGACGCTTAAGCAGAAA 59.251 40.000 26.29 15.17 43.72 2.52
2896 6227 6.255887 GCTTATCTAGACGCTTAAGCAGAAAA 59.744 38.462 26.29 11.30 43.72 2.29
2897 6228 7.201530 GCTTATCTAGACGCTTAAGCAGAAAAA 60.202 37.037 26.29 16.67 43.72 1.94
2943 6274 2.169832 GCTAAGCGCTATCCATTCCA 57.830 50.000 12.05 0.00 35.14 3.53
2944 6275 2.494059 GCTAAGCGCTATCCATTCCAA 58.506 47.619 12.05 0.00 35.14 3.53
2945 6276 3.077359 GCTAAGCGCTATCCATTCCAAT 58.923 45.455 12.05 0.00 35.14 3.16
2946 6277 3.120060 GCTAAGCGCTATCCATTCCAATG 60.120 47.826 12.05 0.00 34.29 2.82
2947 6278 1.242076 AGCGCTATCCATTCCAATGC 58.758 50.000 8.99 0.00 35.08 3.56
2948 6279 0.953727 GCGCTATCCATTCCAATGCA 59.046 50.000 0.00 0.00 35.08 3.96
2949 6280 1.337703 GCGCTATCCATTCCAATGCAA 59.662 47.619 0.00 0.00 35.08 4.08
2950 6281 2.606308 GCGCTATCCATTCCAATGCAAG 60.606 50.000 0.00 0.00 35.08 4.01
2951 6282 2.030540 CGCTATCCATTCCAATGCAAGG 60.031 50.000 0.00 0.00 35.08 3.61
2952 6283 2.288640 GCTATCCATTCCAATGCAAGGC 60.289 50.000 3.76 0.00 35.08 4.35
2953 6284 0.748450 ATCCATTCCAATGCAAGGCG 59.252 50.000 3.76 0.00 35.08 5.52
2954 6285 1.519898 CCATTCCAATGCAAGGCGC 60.520 57.895 0.00 0.00 42.89 6.53
2955 6286 1.514087 CATTCCAATGCAAGGCGCT 59.486 52.632 7.64 0.00 43.06 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 1656 9.550406 CAAATTGATTATTGTCCCATAGCAAAT 57.450 29.630 0.00 0.00 0.00 2.32
87 1720 2.919772 TGTCTAGACTGTGGATGGGA 57.080 50.000 23.01 0.00 0.00 4.37
91 1724 7.246171 ACAAATACTTGTCTAGACTGTGGAT 57.754 36.000 23.01 12.14 42.25 3.41
105 1738 7.206981 AGTGTCTTCCATTGACAAATACTTG 57.793 36.000 0.00 0.00 44.63 3.16
106 1739 8.157476 ACTAGTGTCTTCCATTGACAAATACTT 58.843 33.333 0.00 0.00 44.63 2.24
107 1740 7.604164 CACTAGTGTCTTCCATTGACAAATACT 59.396 37.037 15.06 0.00 44.63 2.12
108 1741 7.624344 GCACTAGTGTCTTCCATTGACAAATAC 60.624 40.741 23.44 0.00 44.63 1.89
109 1742 6.371548 GCACTAGTGTCTTCCATTGACAAATA 59.628 38.462 23.44 0.00 44.63 1.40
111 1744 4.515191 GCACTAGTGTCTTCCATTGACAAA 59.485 41.667 23.44 0.00 44.63 2.83
112 1745 4.065088 GCACTAGTGTCTTCCATTGACAA 58.935 43.478 23.44 0.00 44.63 3.18
114 1747 3.681897 CAGCACTAGTGTCTTCCATTGAC 59.318 47.826 23.44 2.92 35.21 3.18
115 1748 3.324846 ACAGCACTAGTGTCTTCCATTGA 59.675 43.478 23.44 0.00 0.00 2.57
116 1749 3.668447 ACAGCACTAGTGTCTTCCATTG 58.332 45.455 23.44 11.15 0.00 2.82
117 1750 3.307059 GGACAGCACTAGTGTCTTCCATT 60.307 47.826 23.44 0.78 43.34 3.16
118 1751 2.234908 GGACAGCACTAGTGTCTTCCAT 59.765 50.000 23.44 7.14 43.34 3.41
119 1752 1.618837 GGACAGCACTAGTGTCTTCCA 59.381 52.381 23.44 0.00 43.34 3.53
121 1754 3.243907 ACAAGGACAGCACTAGTGTCTTC 60.244 47.826 23.44 15.74 43.34 2.87
123 1756 2.297597 GACAAGGACAGCACTAGTGTCT 59.702 50.000 23.44 17.37 43.34 3.41
124 1757 2.035961 TGACAAGGACAGCACTAGTGTC 59.964 50.000 23.44 15.50 43.12 3.67
126 1759 2.820059 TGACAAGGACAGCACTAGTG 57.180 50.000 18.93 18.93 0.00 2.74
128 1761 6.992063 AATATTTGACAAGGACAGCACTAG 57.008 37.500 0.00 0.00 0.00 2.57
130 1763 5.047802 CCAAATATTTGACAAGGACAGCACT 60.048 40.000 26.32 0.00 40.55 4.40
131 1764 5.048083 TCCAAATATTTGACAAGGACAGCAC 60.048 40.000 26.32 0.00 40.55 4.40
243 3195 2.580322 TGGCTGGGATTGATGAGGTAAA 59.420 45.455 0.00 0.00 0.00 2.01
326 3278 3.883489 GGCTCAAGGAGTTGTACTTGTTT 59.117 43.478 0.00 0.00 43.40 2.83
361 3313 0.338120 CCTCTCCACTCCCTTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
362 3314 0.041982 ACCTCTCCACTCCCTTCTCC 59.958 60.000 0.00 0.00 0.00 3.71
363 3315 1.552792 CAACCTCTCCACTCCCTTCTC 59.447 57.143 0.00 0.00 0.00 2.87
370 3328 0.952984 GTGCTGCAACCTCTCCACTC 60.953 60.000 2.77 0.00 0.00 3.51
479 3437 1.122019 ATCCTCGGTACATGGCCTCC 61.122 60.000 3.32 0.00 0.00 4.30
545 3503 4.021229 TGATTCTAACCTAGTCGAAGCCA 58.979 43.478 0.00 0.00 0.00 4.75
555 3513 7.228906 CCTAGATGAGTCGTTGATTCTAACCTA 59.771 40.741 0.00 0.00 0.00 3.08
597 3555 2.882137 TGCAAACTAAAAAGGACCGGAG 59.118 45.455 9.46 0.00 0.00 4.63
598 3556 2.933573 TGCAAACTAAAAAGGACCGGA 58.066 42.857 9.46 0.00 0.00 5.14
599 3557 3.934457 ATGCAAACTAAAAAGGACCGG 57.066 42.857 0.00 0.00 0.00 5.28
600 3558 7.981142 TCTTATATGCAAACTAAAAAGGACCG 58.019 34.615 0.00 0.00 0.00 4.79
611 3569 9.236006 ACTTCAGTCAAATCTTATATGCAAACT 57.764 29.630 0.00 0.00 0.00 2.66
612 3570 9.495754 GACTTCAGTCAAATCTTATATGCAAAC 57.504 33.333 1.86 0.00 44.18 2.93
629 3587 3.299340 TTACGAGGCTTGACTTCAGTC 57.701 47.619 9.20 0.00 44.97 3.51
630 3588 3.746045 TTTACGAGGCTTGACTTCAGT 57.254 42.857 9.20 0.00 0.00 3.41
631 3589 5.613358 AATTTTACGAGGCTTGACTTCAG 57.387 39.130 9.20 0.00 0.00 3.02
632 3590 5.529430 TCAAATTTTACGAGGCTTGACTTCA 59.471 36.000 9.20 0.00 0.00 3.02
633 3591 5.851703 GTCAAATTTTACGAGGCTTGACTTC 59.148 40.000 9.20 0.00 39.54 3.01
634 3592 5.278315 GGTCAAATTTTACGAGGCTTGACTT 60.278 40.000 9.20 0.00 41.40 3.01
635 3593 4.215613 GGTCAAATTTTACGAGGCTTGACT 59.784 41.667 9.20 0.00 41.40 3.41
636 3594 4.023536 TGGTCAAATTTTACGAGGCTTGAC 60.024 41.667 9.20 5.19 41.09 3.18
637 3595 4.138290 TGGTCAAATTTTACGAGGCTTGA 58.862 39.130 9.20 0.00 0.00 3.02
638 3596 4.497473 TGGTCAAATTTTACGAGGCTTG 57.503 40.909 0.00 0.00 0.00 4.01
639 3597 4.583073 AGTTGGTCAAATTTTACGAGGCTT 59.417 37.500 0.00 0.00 0.00 4.35
640 3598 4.142038 AGTTGGTCAAATTTTACGAGGCT 58.858 39.130 0.00 0.00 0.00 4.58
641 3599 4.499037 AGTTGGTCAAATTTTACGAGGC 57.501 40.909 0.00 0.00 0.00 4.70
642 3600 7.764695 AAAAAGTTGGTCAAATTTTACGAGG 57.235 32.000 18.00 0.00 44.49 4.63
643 3601 9.724839 TCTAAAAAGTTGGTCAAATTTTACGAG 57.275 29.630 18.00 15.41 44.49 4.18
670 3628 8.945481 TTCAGATTGTGAATGTTGACATTTTT 57.055 26.923 10.42 0.00 45.72 1.94
671 3629 8.945481 TTTCAGATTGTGAATGTTGACATTTT 57.055 26.923 10.42 0.00 45.72 1.82
672 3630 9.199982 GATTTCAGATTGTGAATGTTGACATTT 57.800 29.630 10.42 0.00 45.72 2.32
674 3632 7.888424 TGATTTCAGATTGTGAATGTTGACAT 58.112 30.769 0.00 0.00 44.89 3.06
675 3633 7.274603 TGATTTCAGATTGTGAATGTTGACA 57.725 32.000 0.00 0.00 44.89 3.58
676 3634 8.752766 ATTGATTTCAGATTGTGAATGTTGAC 57.247 30.769 0.00 0.00 44.89 3.18
677 3635 9.844790 GTATTGATTTCAGATTGTGAATGTTGA 57.155 29.630 0.00 0.00 44.89 3.18
678 3636 9.079833 GGTATTGATTTCAGATTGTGAATGTTG 57.920 33.333 0.00 0.00 44.89 3.33
679 3637 8.805175 TGGTATTGATTTCAGATTGTGAATGTT 58.195 29.630 0.00 0.00 44.89 2.71
680 3638 8.246180 GTGGTATTGATTTCAGATTGTGAATGT 58.754 33.333 0.00 0.00 44.89 2.71
681 3639 8.464404 AGTGGTATTGATTTCAGATTGTGAATG 58.536 33.333 0.00 0.00 44.89 2.67
682 3640 8.585471 AGTGGTATTGATTTCAGATTGTGAAT 57.415 30.769 0.00 0.00 44.89 2.57
683 3641 9.166173 CTAGTGGTATTGATTTCAGATTGTGAA 57.834 33.333 0.00 0.00 43.82 3.18
684 3642 8.539544 TCTAGTGGTATTGATTTCAGATTGTGA 58.460 33.333 0.00 0.00 0.00 3.58
685 3643 8.722480 TCTAGTGGTATTGATTTCAGATTGTG 57.278 34.615 0.00 0.00 0.00 3.33
686 3644 9.334947 CATCTAGTGGTATTGATTTCAGATTGT 57.665 33.333 0.00 0.00 0.00 2.71
687 3645 9.334947 ACATCTAGTGGTATTGATTTCAGATTG 57.665 33.333 0.00 0.00 0.00 2.67
688 3646 9.334947 CACATCTAGTGGTATTGATTTCAGATT 57.665 33.333 0.00 0.00 44.69 2.40
689 3647 8.899427 CACATCTAGTGGTATTGATTTCAGAT 57.101 34.615 0.00 0.00 44.69 2.90
705 3663 9.209175 GAAACTTTAAGTCATGACACATCTAGT 57.791 33.333 27.02 17.46 0.00 2.57
706 3664 9.208022 TGAAACTTTAAGTCATGACACATCTAG 57.792 33.333 27.02 16.90 0.00 2.43
707 3665 9.725019 ATGAAACTTTAAGTCATGACACATCTA 57.275 29.630 27.02 7.86 30.84 1.98
708 3666 8.627208 ATGAAACTTTAAGTCATGACACATCT 57.373 30.769 27.02 3.53 30.84 2.90
736 3694 9.964303 CAACATTTGCCATGCTAAAGTTATATA 57.036 29.630 4.21 0.00 34.41 0.86
737 3695 8.694540 TCAACATTTGCCATGCTAAAGTTATAT 58.305 29.630 4.21 0.00 34.41 0.86
738 3696 8.060931 TCAACATTTGCCATGCTAAAGTTATA 57.939 30.769 4.21 0.00 34.41 0.98
739 3697 6.934056 TCAACATTTGCCATGCTAAAGTTAT 58.066 32.000 4.21 0.00 34.41 1.89
740 3698 6.338214 TCAACATTTGCCATGCTAAAGTTA 57.662 33.333 4.21 0.00 34.41 2.24
741 3699 5.212532 TCAACATTTGCCATGCTAAAGTT 57.787 34.783 0.00 0.00 36.19 2.66
742 3700 4.870123 TCAACATTTGCCATGCTAAAGT 57.130 36.364 0.00 0.00 28.32 2.66
743 3701 8.428186 AAATATCAACATTTGCCATGCTAAAG 57.572 30.769 0.00 0.00 0.00 1.85
744 3702 8.789825 AAAATATCAACATTTGCCATGCTAAA 57.210 26.923 0.00 0.00 0.00 1.85
745 3703 8.789825 AAAAATATCAACATTTGCCATGCTAA 57.210 26.923 0.00 0.00 0.00 3.09
773 3731 9.537848 CTTCACAAAGTTTGACCGTATTTATAC 57.462 33.333 22.23 0.00 0.00 1.47
774 3732 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
775 3733 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
776 3734 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
777 3735 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
799 3757 9.928236 GCATATTAGAATTCTCTGAAGTCAAAC 57.072 33.333 12.24 0.00 32.70 2.93
800 3758 9.671279 TGCATATTAGAATTCTCTGAAGTCAAA 57.329 29.630 12.24 0.00 32.70 2.69
801 3759 9.322773 CTGCATATTAGAATTCTCTGAAGTCAA 57.677 33.333 12.24 0.00 32.70 3.18
802 3760 8.699130 TCTGCATATTAGAATTCTCTGAAGTCA 58.301 33.333 12.24 3.02 32.70 3.41
803 3761 9.195411 CTCTGCATATTAGAATTCTCTGAAGTC 57.805 37.037 12.24 0.25 32.70 3.01
804 3762 8.703743 ACTCTGCATATTAGAATTCTCTGAAGT 58.296 33.333 12.24 7.56 32.70 3.01
814 3772 9.343539 GGTCCTTTTTACTCTGCATATTAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
815 3773 7.494625 CGGTCCTTTTTACTCTGCATATTAGAA 59.505 37.037 0.00 0.00 0.00 2.10
816 3774 6.984474 CGGTCCTTTTTACTCTGCATATTAGA 59.016 38.462 0.00 0.00 0.00 2.10
817 3775 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
818 3776 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
819 3777 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
820 3778 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
821 3779 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
822 3780 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
823 3781 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
824 3782 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
825 3783 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
826 3784 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
827 3785 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
828 3786 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
829 3787 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
830 3788 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
831 3789 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
832 3790 2.265526 ATACTCCCTCCGGTCCTTTT 57.734 50.000 0.00 0.00 0.00 2.27
833 3791 3.632420 ATATACTCCCTCCGGTCCTTT 57.368 47.619 0.00 0.00 0.00 3.11
834 3792 3.563915 GCTATATACTCCCTCCGGTCCTT 60.564 52.174 0.00 0.00 0.00 3.36
835 3793 2.025131 GCTATATACTCCCTCCGGTCCT 60.025 54.545 0.00 0.00 0.00 3.85
836 3794 2.377073 GCTATATACTCCCTCCGGTCC 58.623 57.143 0.00 0.00 0.00 4.46
837 3795 2.291411 TGGCTATATACTCCCTCCGGTC 60.291 54.545 0.00 0.00 0.00 4.79
838 3796 1.714787 TGGCTATATACTCCCTCCGGT 59.285 52.381 0.00 0.00 0.00 5.28
839 3797 2.526888 TGGCTATATACTCCCTCCGG 57.473 55.000 0.00 0.00 0.00 5.14
840 3798 2.166664 GCTTGGCTATATACTCCCTCCG 59.833 54.545 0.00 0.00 0.00 4.63
841 3799 2.166664 CGCTTGGCTATATACTCCCTCC 59.833 54.545 0.00 0.00 0.00 4.30
842 3800 2.417515 GCGCTTGGCTATATACTCCCTC 60.418 54.545 0.00 0.00 39.11 4.30
843 3801 1.550976 GCGCTTGGCTATATACTCCCT 59.449 52.381 0.00 0.00 39.11 4.20
844 3802 2.011540 GCGCTTGGCTATATACTCCC 57.988 55.000 0.00 0.00 39.11 4.30
1085 4043 2.562298 CAGAGTATGATCTCCAGGAGGC 59.438 54.545 17.10 9.70 35.28 4.70
1133 4091 3.003480 CAGAGATTTCTTCCCCGTTGTC 58.997 50.000 0.00 0.00 0.00 3.18
1152 4110 0.659427 CCGCACATATGAGCAACCAG 59.341 55.000 22.40 7.73 0.00 4.00
1206 4164 2.030805 GGTTGTCTCCATTCAAGTGCAC 60.031 50.000 9.40 9.40 0.00 4.57
1383 4344 2.718563 TCCAAACCGGGCTAATCTTTC 58.281 47.619 6.32 0.00 34.36 2.62
1424 4385 2.670414 CTCATCGTCAGTCAAAAGGCTC 59.330 50.000 0.00 0.00 0.00 4.70
1434 4395 2.492484 GGTACCTCAACTCATCGTCAGT 59.508 50.000 4.06 0.00 0.00 3.41
1671 4656 1.032114 GGTGGATGCCCTTGCTGTAC 61.032 60.000 0.00 0.00 38.71 2.90
1690 4675 4.024048 ACAAAGCAAAGTCTGTTATGTCCG 60.024 41.667 0.00 0.00 0.00 4.79
1738 4723 6.778821 TCCTCCTTGATTGAAACATCAGTTA 58.221 36.000 0.00 0.00 36.84 2.24
1785 4770 5.184892 ACACTAGGATCTGCCAGAATTTT 57.815 39.130 0.00 0.00 40.02 1.82
1793 4778 2.034812 CGGTCTAACACTAGGATCTGCC 59.965 54.545 0.00 0.00 0.00 4.85
1883 4868 2.163613 TGTATCATCAGCACGACTCGTT 59.836 45.455 0.00 0.00 38.32 3.85
1957 4948 8.211629 AGTTACACTACAGGAGTTCTGAAAAAT 58.788 33.333 5.11 0.00 46.18 1.82
1971 4963 8.603242 AAAATACAACCAGAGTTACACTACAG 57.397 34.615 0.00 0.00 33.27 2.74
2103 5265 5.940470 AGAAGTTCAATGGTAGTGGATTGTC 59.060 40.000 5.50 0.00 32.40 3.18
2113 5275 6.703319 TCGTTATCCAAGAAGTTCAATGGTA 58.297 36.000 20.78 12.97 34.50 3.25
2114 5276 5.556915 TCGTTATCCAAGAAGTTCAATGGT 58.443 37.500 20.78 13.67 34.50 3.55
2120 5282 6.134061 GTGTTGTTCGTTATCCAAGAAGTTC 58.866 40.000 0.00 0.00 0.00 3.01
2123 5285 4.513692 TGGTGTTGTTCGTTATCCAAGAAG 59.486 41.667 0.00 0.00 0.00 2.85
2129 5291 6.370718 ACTTTAGATGGTGTTGTTCGTTATCC 59.629 38.462 0.00 0.00 0.00 2.59
2130 5292 7.234384 CACTTTAGATGGTGTTGTTCGTTATC 58.766 38.462 0.00 0.00 0.00 1.75
2137 5299 3.561143 TGCCACTTTAGATGGTGTTGTT 58.439 40.909 0.00 0.00 39.63 2.83
2144 5306 2.440409 AGCAACTGCCACTTTAGATGG 58.560 47.619 0.00 0.00 43.38 3.51
2153 5315 1.065126 AGGAGGATTAGCAACTGCCAC 60.065 52.381 0.00 0.00 43.38 5.01
2167 5329 3.329520 GCTAGATCTACTGAGGAGGAGGA 59.670 52.174 0.00 0.00 29.81 3.71
2177 5339 4.890088 ACCGAGACTAGCTAGATCTACTG 58.110 47.826 27.45 16.66 0.00 2.74
2229 5392 7.650903 AGACTTTGCTTTCTTGTCAATTTCATC 59.349 33.333 0.00 0.00 0.00 2.92
2231 5394 6.753279 CAGACTTTGCTTTCTTGTCAATTTCA 59.247 34.615 0.00 0.00 0.00 2.69
2236 5399 4.016444 ACCAGACTTTGCTTTCTTGTCAA 58.984 39.130 0.00 0.00 0.00 3.18
2275 5438 4.871513 TGCAAAGCCTATACGATCTAGTG 58.128 43.478 0.00 0.00 0.00 2.74
2289 5456 1.202114 TGATTGGTCGATTGCAAAGCC 59.798 47.619 1.71 7.40 0.00 4.35
2293 5460 3.998099 TTGTTGATTGGTCGATTGCAA 57.002 38.095 0.00 0.00 0.00 4.08
2307 5474 5.835819 TGGTTACCATGGAATTCTTTGTTGA 59.164 36.000 21.47 0.00 0.00 3.18
2311 5478 6.604795 AGAGATGGTTACCATGGAATTCTTTG 59.395 38.462 22.84 3.53 45.26 2.77
2313 5480 6.069440 TCAGAGATGGTTACCATGGAATTCTT 60.069 38.462 22.84 0.00 45.26 2.52
2314 5481 5.429762 TCAGAGATGGTTACCATGGAATTCT 59.570 40.000 22.84 12.12 45.26 2.40
2315 5482 5.684704 TCAGAGATGGTTACCATGGAATTC 58.315 41.667 22.84 6.97 45.26 2.17
2323 5490 4.358214 TGGTACATCAGAGATGGTTACCA 58.642 43.478 18.19 18.19 38.19 3.25
2355 5522 6.543831 GTGAAGGATCCTATAACTGCAAATGT 59.456 38.462 16.55 0.00 0.00 2.71
2392 5559 4.066646 ACATTTTACTGGTTTTGTGGGC 57.933 40.909 0.00 0.00 0.00 5.36
2434 5603 8.980481 TTGAATCTAGACCTATTCCAATTTCC 57.020 34.615 0.00 0.00 32.25 3.13
2445 5614 6.608405 TCACCGGTTATTTGAATCTAGACCTA 59.392 38.462 2.97 0.00 0.00 3.08
2462 5631 4.681074 ATTCAAAATTGGTTCACCGGTT 57.319 36.364 2.97 0.00 39.43 4.44
2464 5633 4.082245 AGCTATTCAAAATTGGTTCACCGG 60.082 41.667 0.00 0.00 39.43 5.28
2474 5643 5.535030 GGTAATCCCCGAGCTATTCAAAATT 59.465 40.000 0.00 0.00 0.00 1.82
2507 5676 2.290287 TGCCCCGTAGATGCAGTGT 61.290 57.895 0.00 0.00 30.92 3.55
2509 5678 1.990060 AGTGCCCCGTAGATGCAGT 60.990 57.895 0.00 0.00 34.79 4.40
2510 5679 1.522355 CAGTGCCCCGTAGATGCAG 60.522 63.158 0.00 0.00 34.79 4.41
2512 5681 0.392461 TTTCAGTGCCCCGTAGATGC 60.392 55.000 0.00 0.00 0.00 3.91
2516 5685 0.250553 TTGGTTTCAGTGCCCCGTAG 60.251 55.000 0.00 0.00 0.00 3.51
2517 5686 0.402504 ATTGGTTTCAGTGCCCCGTA 59.597 50.000 0.00 0.00 0.00 4.02
2528 5697 6.159293 CAGAAGGCTTAGGAAAATTGGTTTC 58.841 40.000 0.00 0.00 44.31 2.78
2534 5703 5.707764 GTCTGACAGAAGGCTTAGGAAAATT 59.292 40.000 6.76 0.00 0.00 1.82
2535 5704 5.249420 GTCTGACAGAAGGCTTAGGAAAAT 58.751 41.667 6.76 0.00 0.00 1.82
2536 5705 4.642429 GTCTGACAGAAGGCTTAGGAAAA 58.358 43.478 6.76 0.00 0.00 2.29
2537 5706 3.306088 CGTCTGACAGAAGGCTTAGGAAA 60.306 47.826 6.76 0.00 0.00 3.13
2538 5707 2.231478 CGTCTGACAGAAGGCTTAGGAA 59.769 50.000 6.76 0.00 0.00 3.36
2539 5708 1.819288 CGTCTGACAGAAGGCTTAGGA 59.181 52.381 6.76 0.00 0.00 2.94
2540 5709 1.819288 TCGTCTGACAGAAGGCTTAGG 59.181 52.381 16.88 0.00 0.00 2.69
2541 5710 2.729467 CGTCGTCTGACAGAAGGCTTAG 60.729 54.545 18.71 0.00 45.80 2.18
2542 5711 1.199327 CGTCGTCTGACAGAAGGCTTA 59.801 52.381 18.71 0.00 45.80 3.09
2562 5731 5.163943 GCTTCTTGAAAATGTACCTCGACTC 60.164 44.000 0.00 0.00 0.00 3.36
2590 5759 2.390225 AGCATATCTTCTCCCCTCGT 57.610 50.000 0.00 0.00 0.00 4.18
2591 5760 3.574396 TGTTAGCATATCTTCTCCCCTCG 59.426 47.826 0.00 0.00 0.00 4.63
2592 5761 4.835615 TCTGTTAGCATATCTTCTCCCCTC 59.164 45.833 0.00 0.00 0.00 4.30
2646 5977 5.009010 ACAAAGCAAAGTCTGTTATGTCCAG 59.991 40.000 0.00 0.00 0.00 3.86
2660 5991 3.066621 TGCTAAGTGGACACAAAGCAAAG 59.933 43.478 21.60 4.64 43.50 2.77
2665 5996 3.814842 TGTCATGCTAAGTGGACACAAAG 59.185 43.478 5.14 2.86 35.51 2.77
2677 6008 7.862512 TCAATTGTATGATGTGTCATGCTAA 57.137 32.000 5.13 2.55 44.73 3.09
2700 6031 5.809051 GCAATTCCTCCTTGATTGAAACATC 59.191 40.000 0.00 0.00 0.00 3.06
2722 6053 4.244425 GCTACTAGCTAGTAATGCAGCA 57.756 45.455 28.66 12.72 40.36 4.41
2753 6084 2.830704 GCATGTTGCAGCTCCCAAGC 62.831 60.000 1.17 0.00 44.26 4.01
2754 6085 1.214589 GCATGTTGCAGCTCCCAAG 59.785 57.895 1.17 0.00 44.26 3.61
2755 6086 3.368822 GCATGTTGCAGCTCCCAA 58.631 55.556 1.17 0.00 44.26 4.12
2764 6095 2.202222 GTCGCACGAGCATGTTGC 60.202 61.111 5.50 0.00 45.46 4.17
2765 6096 2.094539 CGTCGCACGAGCATGTTG 59.905 61.111 5.50 0.00 46.05 3.33
2766 6097 3.112075 CCGTCGCACGAGCATGTT 61.112 61.111 5.50 0.00 46.05 2.71
2767 6098 4.357947 ACCGTCGCACGAGCATGT 62.358 61.111 5.50 0.00 46.05 3.21
2768 6099 3.842126 CACCGTCGCACGAGCATG 61.842 66.667 5.50 0.00 46.05 4.06
2779 6110 3.749064 TCTGGCTCTCGCACCGTC 61.749 66.667 0.00 0.00 38.10 4.79
2780 6111 4.057428 GTCTGGCTCTCGCACCGT 62.057 66.667 0.00 0.00 38.10 4.83
2781 6112 4.803426 GGTCTGGCTCTCGCACCG 62.803 72.222 0.00 0.00 38.10 4.94
2782 6113 2.948720 AAGGTCTGGCTCTCGCACC 61.949 63.158 0.00 0.00 38.10 5.01
2783 6114 1.739562 CAAGGTCTGGCTCTCGCAC 60.740 63.158 0.00 0.00 38.10 5.34
2784 6115 2.659016 CAAGGTCTGGCTCTCGCA 59.341 61.111 0.00 0.00 38.10 5.10
2785 6116 2.125350 CCAAGGTCTGGCTCTCGC 60.125 66.667 0.00 0.00 38.76 5.03
2786 6117 1.515020 CTCCAAGGTCTGGCTCTCG 59.485 63.158 0.00 0.00 45.98 4.04
2787 6118 1.904032 CCTCCAAGGTCTGGCTCTC 59.096 63.158 0.00 0.00 45.98 3.20
2788 6119 2.297129 GCCTCCAAGGTCTGGCTCT 61.297 63.158 11.21 0.00 45.98 4.09
2789 6120 2.270527 GCCTCCAAGGTCTGGCTC 59.729 66.667 11.21 0.00 45.98 4.70
2791 6122 0.962855 GAAAGCCTCCAAGGTCTGGC 60.963 60.000 10.74 10.74 45.98 4.85
2793 6124 1.612726 CCTGAAAGCCTCCAAGGTCTG 60.613 57.143 0.00 0.00 37.80 3.51
2794 6125 0.695347 CCTGAAAGCCTCCAAGGTCT 59.305 55.000 0.00 0.00 37.80 3.85
2795 6126 0.962855 GCCTGAAAGCCTCCAAGGTC 60.963 60.000 0.00 0.00 37.80 3.85
2796 6127 1.075659 GCCTGAAAGCCTCCAAGGT 59.924 57.895 0.00 0.00 37.80 3.50
2797 6128 0.251519 AAGCCTGAAAGCCTCCAAGG 60.252 55.000 0.00 0.00 38.80 3.61
2798 6129 1.271656 CAAAGCCTGAAAGCCTCCAAG 59.728 52.381 0.00 0.00 0.00 3.61
2799 6130 1.331214 CAAAGCCTGAAAGCCTCCAA 58.669 50.000 0.00 0.00 0.00 3.53
2800 6131 0.540365 CCAAAGCCTGAAAGCCTCCA 60.540 55.000 0.00 0.00 0.00 3.86
2801 6132 0.251341 TCCAAAGCCTGAAAGCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
2802 6133 1.844687 ATCCAAAGCCTGAAAGCCTC 58.155 50.000 0.00 0.00 0.00 4.70
2803 6134 3.677156 ATATCCAAAGCCTGAAAGCCT 57.323 42.857 0.00 0.00 0.00 4.58
2804 6135 7.524717 TTATTATATCCAAAGCCTGAAAGCC 57.475 36.000 0.00 0.00 0.00 4.35
2827 6158 8.378565 CCCTAACAACCAGTCATCTCATATATT 58.621 37.037 0.00 0.00 0.00 1.28
2828 6159 7.527868 GCCCTAACAACCAGTCATCTCATATAT 60.528 40.741 0.00 0.00 0.00 0.86
2829 6160 6.239600 GCCCTAACAACCAGTCATCTCATATA 60.240 42.308 0.00 0.00 0.00 0.86
2830 6161 5.455326 GCCCTAACAACCAGTCATCTCATAT 60.455 44.000 0.00 0.00 0.00 1.78
2831 6162 4.141711 GCCCTAACAACCAGTCATCTCATA 60.142 45.833 0.00 0.00 0.00 2.15
2832 6163 3.370953 GCCCTAACAACCAGTCATCTCAT 60.371 47.826 0.00 0.00 0.00 2.90
2833 6164 2.027192 GCCCTAACAACCAGTCATCTCA 60.027 50.000 0.00 0.00 0.00 3.27
2834 6165 2.027192 TGCCCTAACAACCAGTCATCTC 60.027 50.000 0.00 0.00 0.00 2.75
2835 6166 1.985159 TGCCCTAACAACCAGTCATCT 59.015 47.619 0.00 0.00 0.00 2.90
2836 6167 2.489938 TGCCCTAACAACCAGTCATC 57.510 50.000 0.00 0.00 0.00 2.92
2837 6168 2.578021 AGATGCCCTAACAACCAGTCAT 59.422 45.455 0.00 0.00 0.00 3.06
2838 6169 1.985159 AGATGCCCTAACAACCAGTCA 59.015 47.619 0.00 0.00 0.00 3.41
2839 6170 2.789409 AGATGCCCTAACAACCAGTC 57.211 50.000 0.00 0.00 0.00 3.51
2840 6171 2.910319 TGTAGATGCCCTAACAACCAGT 59.090 45.455 0.00 0.00 0.00 4.00
2841 6172 3.627395 TGTAGATGCCCTAACAACCAG 57.373 47.619 0.00 0.00 0.00 4.00
2842 6173 4.269183 CATTGTAGATGCCCTAACAACCA 58.731 43.478 0.00 0.00 0.00 3.67
2843 6174 3.632145 CCATTGTAGATGCCCTAACAACC 59.368 47.826 0.00 0.00 0.00 3.77
2844 6175 3.632145 CCCATTGTAGATGCCCTAACAAC 59.368 47.826 0.00 0.00 0.00 3.32
2845 6176 3.525609 TCCCATTGTAGATGCCCTAACAA 59.474 43.478 0.00 0.00 0.00 2.83
2846 6177 3.119319 TCCCATTGTAGATGCCCTAACA 58.881 45.455 0.00 0.00 0.00 2.41
2847 6178 3.391296 TCTCCCATTGTAGATGCCCTAAC 59.609 47.826 0.00 0.00 0.00 2.34
2848 6179 3.664320 TCTCCCATTGTAGATGCCCTAA 58.336 45.455 0.00 0.00 0.00 2.69
2849 6180 3.344535 TCTCCCATTGTAGATGCCCTA 57.655 47.619 0.00 0.00 0.00 3.53
2850 6181 2.196742 TCTCCCATTGTAGATGCCCT 57.803 50.000 0.00 0.00 0.00 5.19
2851 6182 2.787994 CATCTCCCATTGTAGATGCCC 58.212 52.381 11.25 0.00 41.80 5.36
2855 6186 6.949117 AGATAAGCATCTCCCATTGTAGAT 57.051 37.500 0.00 0.00 36.80 1.98
2856 6187 7.177568 GTCTAGATAAGCATCTCCCATTGTAGA 59.822 40.741 0.00 0.00 40.81 2.59
2857 6188 7.319646 GTCTAGATAAGCATCTCCCATTGTAG 58.680 42.308 0.00 0.00 40.81 2.74
2858 6189 6.071896 CGTCTAGATAAGCATCTCCCATTGTA 60.072 42.308 0.00 0.00 40.81 2.41
2859 6190 5.279206 CGTCTAGATAAGCATCTCCCATTGT 60.279 44.000 0.00 0.00 40.81 2.71
2860 6191 5.167121 CGTCTAGATAAGCATCTCCCATTG 58.833 45.833 0.00 0.00 40.81 2.82
2861 6192 4.322349 GCGTCTAGATAAGCATCTCCCATT 60.322 45.833 11.36 0.00 40.81 3.16
2862 6193 3.194542 GCGTCTAGATAAGCATCTCCCAT 59.805 47.826 11.36 0.00 40.81 4.00
2863 6194 2.558795 GCGTCTAGATAAGCATCTCCCA 59.441 50.000 11.36 0.00 40.81 4.37
2864 6195 2.823154 AGCGTCTAGATAAGCATCTCCC 59.177 50.000 16.48 0.00 40.81 4.30
2865 6196 4.513198 AAGCGTCTAGATAAGCATCTCC 57.487 45.455 16.48 0.00 40.81 3.71
2866 6197 5.571357 GCTTAAGCGTCTAGATAAGCATCTC 59.429 44.000 22.42 6.31 45.92 2.75
2867 6198 5.465935 GCTTAAGCGTCTAGATAAGCATCT 58.534 41.667 22.42 9.86 45.92 2.90
2868 6199 5.755330 GCTTAAGCGTCTAGATAAGCATC 57.245 43.478 22.42 0.00 45.92 3.91
2871 6202 4.861210 TCTGCTTAAGCGTCTAGATAAGC 58.139 43.478 21.97 21.29 46.50 3.09
2872 6203 7.757097 TTTTCTGCTTAAGCGTCTAGATAAG 57.243 36.000 21.97 10.62 45.83 1.73
2923 6254 6.422449 CATTGGAATGGATAGCGCTTAGCG 62.422 50.000 23.18 23.18 42.69 4.26
2924 6255 3.120060 CATTGGAATGGATAGCGCTTAGC 60.120 47.826 18.68 5.11 38.25 3.09
2925 6256 3.120060 GCATTGGAATGGATAGCGCTTAG 60.120 47.826 18.68 0.00 36.90 2.18
2926 6257 2.813754 GCATTGGAATGGATAGCGCTTA 59.186 45.455 18.68 1.37 36.90 3.09
2927 6258 1.610522 GCATTGGAATGGATAGCGCTT 59.389 47.619 18.68 2.89 36.90 4.68
2928 6259 1.242076 GCATTGGAATGGATAGCGCT 58.758 50.000 17.26 17.26 36.90 5.92
2929 6260 0.953727 TGCATTGGAATGGATAGCGC 59.046 50.000 0.00 0.00 36.90 5.92
2930 6261 2.030540 CCTTGCATTGGAATGGATAGCG 60.031 50.000 0.35 0.00 36.61 4.26
2931 6262 2.288640 GCCTTGCATTGGAATGGATAGC 60.289 50.000 10.08 1.65 36.61 2.97
2932 6263 2.030540 CGCCTTGCATTGGAATGGATAG 60.031 50.000 10.08 0.50 36.61 2.08
2933 6264 1.955778 CGCCTTGCATTGGAATGGATA 59.044 47.619 10.08 0.00 36.61 2.59
2934 6265 0.748450 CGCCTTGCATTGGAATGGAT 59.252 50.000 10.08 0.00 36.61 3.41
2935 6266 1.947597 GCGCCTTGCATTGGAATGGA 61.948 55.000 10.08 0.00 45.45 3.41
2936 6267 1.519898 GCGCCTTGCATTGGAATGG 60.520 57.895 10.08 0.00 45.45 3.16
2937 6268 4.097828 GCGCCTTGCATTGGAATG 57.902 55.556 10.08 0.00 45.45 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.