Multiple sequence alignment - TraesCS2A01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G016100 chr2A 100.000 4944 0 0 3713 8656 7383262 7388205 0.000000e+00 9130.0
1 TraesCS2A01G016100 chr2A 100.000 3392 0 0 1 3392 7379550 7382941 0.000000e+00 6264.0
2 TraesCS2A01G016100 chr2A 99.497 994 5 0 7663 8656 720554016 720555009 0.000000e+00 1808.0
3 TraesCS2A01G016100 chr2A 83.237 1563 218 36 1060 2592 696185701 696187249 0.000000e+00 1395.0
4 TraesCS2A01G016100 chr2A 89.535 172 15 2 8286 8457 25460562 25460730 1.890000e-51 215.0
5 TraesCS2A01G016100 chr2A 88.953 172 16 2 8286 8457 25472202 25472370 8.810000e-50 209.0
6 TraesCS2A01G016100 chr2A 91.667 132 9 2 8470 8600 44165661 44165531 1.920000e-41 182.0
7 TraesCS2A01G016100 chr2B 91.474 2862 200 17 3715 6556 794835146 794837983 0.000000e+00 3893.0
8 TraesCS2A01G016100 chr2B 88.824 1897 186 14 1073 2963 150738719 150736843 0.000000e+00 2305.0
9 TraesCS2A01G016100 chr2B 82.570 1922 275 38 1073 2963 693469592 693471484 0.000000e+00 1639.0
10 TraesCS2A01G016100 chr2B 91.418 839 65 7 1 837 77926466 77927299 0.000000e+00 1144.0
11 TraesCS2A01G016100 chr2B 85.120 961 96 27 6719 7663 4727270 4728199 0.000000e+00 939.0
12 TraesCS2A01G016100 chr2B 84.000 250 28 6 838 1075 4726832 4727081 6.760000e-56 230.0
13 TraesCS2A01G016100 chr2B 88.757 169 15 3 8286 8454 128382865 128383029 4.100000e-48 204.0
14 TraesCS2A01G016100 chr2B 92.913 127 8 1 8470 8596 673715484 673715609 5.340000e-42 183.0
15 TraesCS2A01G016100 chr2B 92.188 128 9 1 8470 8597 756299622 756299748 6.900000e-41 180.0
16 TraesCS2A01G016100 chr2B 80.660 212 29 10 7360 7565 490790238 490790033 4.180000e-33 154.0
17 TraesCS2A01G016100 chr2B 84.444 90 14 0 7075 7164 4721143 4721232 1.200000e-13 89.8
18 TraesCS2A01G016100 chr7D 91.075 2857 217 20 3715 6551 631633753 631636591 0.000000e+00 3829.0
19 TraesCS2A01G016100 chr7D 86.379 2364 232 52 1073 3392 631631383 631633700 0.000000e+00 2499.0
20 TraesCS2A01G016100 chr7D 85.065 154 15 6 7411 7559 619113030 619113180 5.410000e-32 150.0
21 TraesCS2A01G016100 chr5D 90.163 2887 225 27 3715 6556 36556474 36559346 0.000000e+00 3703.0
22 TraesCS2A01G016100 chr5D 91.503 1883 151 7 4678 6556 546360913 546359036 0.000000e+00 2582.0
23 TraesCS2A01G016100 chr5D 89.286 56 2 4 7663 7717 486215029 486214977 5.610000e-07 67.6
24 TraesCS2A01G016100 chr3B 89.499 2876 239 46 3714 6548 677437295 677440148 0.000000e+00 3579.0
25 TraesCS2A01G016100 chr3B 89.420 2240 211 15 1133 3370 661733975 661731760 0.000000e+00 2800.0
26 TraesCS2A01G016100 chr3B 88.924 2239 211 14 1133 3370 661766693 661764491 0.000000e+00 2726.0
27 TraesCS2A01G016100 chr3B 85.781 2356 267 51 1073 3392 677434919 677437242 0.000000e+00 2433.0
28 TraesCS2A01G016100 chr3B 86.585 1789 210 23 1616 3392 747770543 747768773 0.000000e+00 1947.0
29 TraesCS2A01G016100 chr3B 91.966 834 61 6 7 837 172726370 172725540 0.000000e+00 1164.0
30 TraesCS2A01G016100 chr3B 90.595 840 66 10 1 837 70456694 70457523 0.000000e+00 1101.0
31 TraesCS2A01G016100 chr6D 91.253 2618 220 7 3946 6559 204015053 204017665 0.000000e+00 3557.0
32 TraesCS2A01G016100 chr6D 89.232 2331 219 20 1067 3392 204011544 204013847 0.000000e+00 2885.0
33 TraesCS2A01G016100 chr6D 91.634 1554 118 6 1840 3392 725504 727046 0.000000e+00 2139.0
34 TraesCS2A01G016100 chr6D 89.286 56 2 4 7661 7713 38772342 38772396 5.610000e-07 67.6
35 TraesCS2A01G016100 chr1D 93.038 2442 122 18 3715 6121 491918349 491920777 0.000000e+00 3524.0
36 TraesCS2A01G016100 chr1D 93.979 1827 101 6 4735 6557 485949502 485951323 0.000000e+00 2756.0
37 TraesCS2A01G016100 chr1D 87.787 2350 242 24 1072 3392 342160537 342158204 0.000000e+00 2708.0
38 TraesCS2A01G016100 chr1D 88.087 915 81 12 3713 4611 189703509 189702607 0.000000e+00 1061.0
39 TraesCS2A01G016100 chr1D 84.701 268 20 5 7872 8123 155959749 155960011 1.870000e-61 248.0
40 TraesCS2A01G016100 chr6A 88.463 2869 289 32 3715 6557 305313550 305310698 0.000000e+00 3426.0
41 TraesCS2A01G016100 chr6A 91.486 1985 157 8 4578 6556 455780716 455782694 0.000000e+00 2719.0
42 TraesCS2A01G016100 chr6A 94.351 832 44 1 8 836 121713903 121713072 0.000000e+00 1273.0
43 TraesCS2A01G016100 chr6A 80.457 1356 193 37 1073 2376 455761578 455762913 0.000000e+00 970.0
44 TraesCS2A01G016100 chr6A 84.074 270 21 8 7872 8123 87232209 87231944 3.120000e-59 241.0
45 TraesCS2A01G016100 chrUn 89.307 2338 220 17 1072 3392 79335243 79337567 0.000000e+00 2905.0
46 TraesCS2A01G016100 chrUn 86.465 1788 213 21 1616 3392 77784108 77785877 0.000000e+00 1934.0
47 TraesCS2A01G016100 chr6B 88.527 2336 219 24 1077 3392 678093973 678096279 0.000000e+00 2784.0
48 TraesCS2A01G016100 chr6B 82.463 268 25 6 7872 8123 123825877 123825616 1.890000e-51 215.0
49 TraesCS2A01G016100 chr6B 89.535 172 14 3 8286 8457 543833057 543832890 1.890000e-51 215.0
50 TraesCS2A01G016100 chr1A 87.011 2302 267 25 1104 3392 524606986 524604704 0.000000e+00 2566.0
51 TraesCS2A01G016100 chr1A 86.767 2335 262 32 1073 3392 505733408 505735710 0.000000e+00 2556.0
52 TraesCS2A01G016100 chr5A 86.681 2350 239 41 1075 3383 116802584 116800268 0.000000e+00 2538.0
53 TraesCS2A01G016100 chr5A 98.995 995 9 1 7663 8656 139078288 139077294 0.000000e+00 1781.0
54 TraesCS2A01G016100 chr5A 89.535 172 15 2 8286 8457 608275300 608275132 1.890000e-51 215.0
55 TraesCS2A01G016100 chr5A 88.953 172 16 2 8286 8457 692382262 692382094 8.810000e-50 209.0
56 TraesCS2A01G016100 chr5A 88.068 176 18 2 8280 8455 79275302 79275474 1.140000e-48 206.0
57 TraesCS2A01G016100 chr5A 95.556 45 2 0 7663 7707 126764439 126764483 1.210000e-08 73.1
58 TraesCS2A01G016100 chr5A 90.741 54 2 3 7663 7713 607953236 607953183 1.560000e-07 69.4
59 TraesCS2A01G016100 chr1B 86.689 1788 209 21 1616 3392 60480820 60479051 0.000000e+00 1956.0
60 TraesCS2A01G016100 chr1B 92.188 832 60 4 7 837 671461572 671460745 0.000000e+00 1171.0
61 TraesCS2A01G016100 chr4B 92.225 836 53 10 7 837 637369843 637369015 0.000000e+00 1173.0
62 TraesCS2A01G016100 chr7B 91.257 835 63 8 7 837 703711191 703710363 0.000000e+00 1129.0
63 TraesCS2A01G016100 chr7B 91.138 835 64 9 10 837 529126361 529125530 0.000000e+00 1123.0
64 TraesCS2A01G016100 chr7B 90.979 776 66 4 3715 4488 510539251 510540024 0.000000e+00 1042.0
65 TraesCS2A01G016100 chr7B 89.305 187 18 2 8472 8656 323214403 323214217 5.220000e-57 233.0
66 TraesCS2A01G016100 chr7B 87.958 191 19 2 8470 8656 715287573 715287383 1.130000e-53 222.0
67 TraesCS2A01G016100 chr7B 86.667 195 20 4 7935 8128 323223463 323223274 2.450000e-50 211.0
68 TraesCS2A01G016100 chr7B 93.130 131 8 1 8470 8600 733091036 733090907 3.190000e-44 191.0
69 TraesCS2A01G016100 chr7B 85.057 174 21 5 1067 1237 678599705 678599876 1.160000e-38 172.0
70 TraesCS2A01G016100 chr7B 83.750 160 20 5 7411 7566 714049984 714050141 7.000000e-31 147.0
71 TraesCS2A01G016100 chr2D 90.465 839 67 11 1 837 431672762 431673589 0.000000e+00 1094.0
72 TraesCS2A01G016100 chr2D 89.122 809 85 3 3715 4522 449575489 449576295 0.000000e+00 1003.0
73 TraesCS2A01G016100 chr2D 93.803 355 22 0 7309 7663 8338567 8338921 1.280000e-147 534.0
74 TraesCS2A01G016100 chr2D 94.595 185 7 2 6999 7181 8338242 8338425 5.120000e-72 283.0
75 TraesCS2A01G016100 chr2D 85.106 141 19 2 7426 7565 418764010 418763871 9.060000e-30 143.0
76 TraesCS2A01G016100 chr2D 89.831 59 2 4 7661 7718 524013855 524013910 1.210000e-08 73.1
77 TraesCS2A01G016100 chr7A 86.486 259 25 6 7689 7937 347260303 347260045 8.560000e-70 276.0
78 TraesCS2A01G016100 chr3D 83.271 269 23 5 7872 8123 31574466 31574729 2.430000e-55 228.0
79 TraesCS2A01G016100 chr3D 88.542 192 16 4 7935 8125 31575924 31576110 2.430000e-55 228.0
80 TraesCS2A01G016100 chr3D 88.235 187 16 4 8472 8656 31576444 31576626 1.460000e-52 219.0
81 TraesCS2A01G016100 chr3D 86.842 190 19 5 7935 8123 31575242 31575426 3.170000e-49 207.0
82 TraesCS2A01G016100 chr4D 89.474 57 2 4 7663 7718 264501036 264500983 1.560000e-07 69.4
83 TraesCS2A01G016100 chr3A 90.741 54 2 3 7663 7713 694983625 694983572 1.560000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G016100 chr2A 7379550 7388205 8655 False 7697.0 9130 100.0000 1 8656 2 chr2A.!!$F5 8655
1 TraesCS2A01G016100 chr2A 720554016 720555009 993 False 1808.0 1808 99.4970 7663 8656 1 chr2A.!!$F4 993
2 TraesCS2A01G016100 chr2A 696185701 696187249 1548 False 1395.0 1395 83.2370 1060 2592 1 chr2A.!!$F3 1532
3 TraesCS2A01G016100 chr2B 794835146 794837983 2837 False 3893.0 3893 91.4740 3715 6556 1 chr2B.!!$F7 2841
4 TraesCS2A01G016100 chr2B 150736843 150738719 1876 True 2305.0 2305 88.8240 1073 2963 1 chr2B.!!$R1 1890
5 TraesCS2A01G016100 chr2B 693469592 693471484 1892 False 1639.0 1639 82.5700 1073 2963 1 chr2B.!!$F5 1890
6 TraesCS2A01G016100 chr2B 77926466 77927299 833 False 1144.0 1144 91.4180 1 837 1 chr2B.!!$F2 836
7 TraesCS2A01G016100 chr2B 4726832 4728199 1367 False 584.5 939 84.5600 838 7663 2 chr2B.!!$F8 6825
8 TraesCS2A01G016100 chr7D 631631383 631636591 5208 False 3164.0 3829 88.7270 1073 6551 2 chr7D.!!$F2 5478
9 TraesCS2A01G016100 chr5D 36556474 36559346 2872 False 3703.0 3703 90.1630 3715 6556 1 chr5D.!!$F1 2841
10 TraesCS2A01G016100 chr5D 546359036 546360913 1877 True 2582.0 2582 91.5030 4678 6556 1 chr5D.!!$R2 1878
11 TraesCS2A01G016100 chr3B 677434919 677440148 5229 False 3006.0 3579 87.6400 1073 6548 2 chr3B.!!$F2 5475
12 TraesCS2A01G016100 chr3B 661731760 661733975 2215 True 2800.0 2800 89.4200 1133 3370 1 chr3B.!!$R2 2237
13 TraesCS2A01G016100 chr3B 661764491 661766693 2202 True 2726.0 2726 88.9240 1133 3370 1 chr3B.!!$R3 2237
14 TraesCS2A01G016100 chr3B 747768773 747770543 1770 True 1947.0 1947 86.5850 1616 3392 1 chr3B.!!$R4 1776
15 TraesCS2A01G016100 chr3B 172725540 172726370 830 True 1164.0 1164 91.9660 7 837 1 chr3B.!!$R1 830
16 TraesCS2A01G016100 chr3B 70456694 70457523 829 False 1101.0 1101 90.5950 1 837 1 chr3B.!!$F1 836
17 TraesCS2A01G016100 chr6D 204011544 204017665 6121 False 3221.0 3557 90.2425 1067 6559 2 chr6D.!!$F3 5492
18 TraesCS2A01G016100 chr6D 725504 727046 1542 False 2139.0 2139 91.6340 1840 3392 1 chr6D.!!$F1 1552
19 TraesCS2A01G016100 chr1D 491918349 491920777 2428 False 3524.0 3524 93.0380 3715 6121 1 chr1D.!!$F3 2406
20 TraesCS2A01G016100 chr1D 485949502 485951323 1821 False 2756.0 2756 93.9790 4735 6557 1 chr1D.!!$F2 1822
21 TraesCS2A01G016100 chr1D 342158204 342160537 2333 True 2708.0 2708 87.7870 1072 3392 1 chr1D.!!$R2 2320
22 TraesCS2A01G016100 chr1D 189702607 189703509 902 True 1061.0 1061 88.0870 3713 4611 1 chr1D.!!$R1 898
23 TraesCS2A01G016100 chr6A 305310698 305313550 2852 True 3426.0 3426 88.4630 3715 6557 1 chr6A.!!$R3 2842
24 TraesCS2A01G016100 chr6A 455780716 455782694 1978 False 2719.0 2719 91.4860 4578 6556 1 chr6A.!!$F2 1978
25 TraesCS2A01G016100 chr6A 121713072 121713903 831 True 1273.0 1273 94.3510 8 836 1 chr6A.!!$R2 828
26 TraesCS2A01G016100 chr6A 455761578 455762913 1335 False 970.0 970 80.4570 1073 2376 1 chr6A.!!$F1 1303
27 TraesCS2A01G016100 chrUn 79335243 79337567 2324 False 2905.0 2905 89.3070 1072 3392 1 chrUn.!!$F2 2320
28 TraesCS2A01G016100 chrUn 77784108 77785877 1769 False 1934.0 1934 86.4650 1616 3392 1 chrUn.!!$F1 1776
29 TraesCS2A01G016100 chr6B 678093973 678096279 2306 False 2784.0 2784 88.5270 1077 3392 1 chr6B.!!$F1 2315
30 TraesCS2A01G016100 chr1A 524604704 524606986 2282 True 2566.0 2566 87.0110 1104 3392 1 chr1A.!!$R1 2288
31 TraesCS2A01G016100 chr1A 505733408 505735710 2302 False 2556.0 2556 86.7670 1073 3392 1 chr1A.!!$F1 2319
32 TraesCS2A01G016100 chr5A 116800268 116802584 2316 True 2538.0 2538 86.6810 1075 3383 1 chr5A.!!$R1 2308
33 TraesCS2A01G016100 chr5A 139077294 139078288 994 True 1781.0 1781 98.9950 7663 8656 1 chr5A.!!$R2 993
34 TraesCS2A01G016100 chr1B 60479051 60480820 1769 True 1956.0 1956 86.6890 1616 3392 1 chr1B.!!$R1 1776
35 TraesCS2A01G016100 chr1B 671460745 671461572 827 True 1171.0 1171 92.1880 7 837 1 chr1B.!!$R2 830
36 TraesCS2A01G016100 chr4B 637369015 637369843 828 True 1173.0 1173 92.2250 7 837 1 chr4B.!!$R1 830
37 TraesCS2A01G016100 chr7B 703710363 703711191 828 True 1129.0 1129 91.2570 7 837 1 chr7B.!!$R4 830
38 TraesCS2A01G016100 chr7B 529125530 529126361 831 True 1123.0 1123 91.1380 10 837 1 chr7B.!!$R3 827
39 TraesCS2A01G016100 chr7B 510539251 510540024 773 False 1042.0 1042 90.9790 3715 4488 1 chr7B.!!$F1 773
40 TraesCS2A01G016100 chr2D 431672762 431673589 827 False 1094.0 1094 90.4650 1 837 1 chr2D.!!$F1 836
41 TraesCS2A01G016100 chr2D 449575489 449576295 806 False 1003.0 1003 89.1220 3715 4522 1 chr2D.!!$F2 807
42 TraesCS2A01G016100 chr2D 8338242 8338921 679 False 408.5 534 94.1990 6999 7663 2 chr2D.!!$F4 664
43 TraesCS2A01G016100 chr3D 31574466 31576626 2160 False 220.5 228 86.7225 7872 8656 4 chr3D.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 873 0.179012 AAAAGAGAAACGGGCCGGAA 60.179 50.000 31.78 0.00 0.00 4.30 F
857 878 0.393402 AGAAACGGGCCGGAATAACC 60.393 55.000 31.78 11.37 0.00 2.85 F
1796 1871 0.037326 CCTGCTTGGCTAAGTCGACA 60.037 55.000 19.50 0.00 36.27 4.35 F
1975 2056 0.107268 TCATGAGGCATGGACCATCG 59.893 55.000 3.21 1.79 41.66 3.84 F
2262 2343 0.116143 ACTCTTGCCTCCTCCTCACT 59.884 55.000 0.00 0.00 0.00 3.41 F
2314 2395 0.394488 CAGTCACGGCTCCCTCTCTA 60.394 60.000 0.00 0.00 0.00 2.43 F
3848 3930 0.451783 ATGCATCGGTTCCTTTTCGC 59.548 50.000 0.00 0.00 0.00 4.70 F
4428 5433 0.034767 TGTACGACCCCTCGATGACT 60.035 55.000 0.00 0.00 43.06 3.41 F
5908 7001 0.038526 GATTCACGGTGTCTCACGGT 60.039 55.000 8.17 7.15 46.09 4.83 F
6701 7942 0.320421 CCAAGAAGGAAGCCGTTCGA 60.320 55.000 0.00 0.00 40.87 3.71 F
6704 7945 0.895530 AGAAGGAAGCCGTTCGATGA 59.104 50.000 0.00 0.00 40.87 2.92 F
6708 7949 1.002087 AGGAAGCCGTTCGATGAAACT 59.998 47.619 0.00 0.00 32.92 2.66 F
6753 7994 1.004394 CACAGGGTCCCTTTTACCTCC 59.996 57.143 8.08 0.00 37.18 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 1864 0.039035 AAGGGAGAGAGCTGTCGACT 59.961 55.000 17.92 2.38 0.00 4.18 R
2487 2568 0.790814 GACCAAGAAAACTCCGCTCG 59.209 55.000 0.00 0.00 0.00 5.03 R
3227 3309 0.111253 AAGTTTGAGCAGGACCCCAG 59.889 55.000 0.00 0.00 0.00 4.45 R
3842 3924 2.622942 AGCATCACTCCAAAAGCGAAAA 59.377 40.909 0.00 0.00 0.00 2.29 R
4133 5138 5.750352 AGGGAAAAACATGCTCATCAAAT 57.250 34.783 0.00 0.00 0.00 2.32 R
4313 5318 2.881352 GGCGACGAAGAAGGCGAG 60.881 66.667 0.00 0.00 0.00 5.03 R
4715 5800 0.034198 TTGTTGATGACGGCGGAGAA 59.966 50.000 13.24 0.00 0.00 2.87 R
5919 7012 0.252284 ACATCCAGAGGAGGTCGGTT 60.252 55.000 0.00 0.00 43.62 4.44 R
7072 8383 0.747283 CAGGTGAGGAAGCCTGCATC 60.747 60.000 0.00 0.00 44.65 3.91 R
7537 9691 1.077089 GTTCTTGAGCTCGCGGTACC 61.077 60.000 6.13 0.16 0.00 3.34 R
7597 9751 1.539869 ATCCCCATCCCCATCCTCG 60.540 63.158 0.00 0.00 0.00 4.63 R
7631 9785 4.157120 GTCATCCCGGGGTCCACG 62.157 72.222 23.50 6.53 0.00 4.94 R
7728 9882 7.074653 AGCTTATCGTATATCTTTTTGGGGA 57.925 36.000 0.00 0.00 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 1.715785 CCCCTTTTTGCCTTTCTCCA 58.284 50.000 0.00 0.00 0.00 3.86
127 132 0.621571 CTCCCTCTGGATTGGGTGGA 60.622 60.000 0.00 0.00 43.74 4.02
160 165 0.723981 GCGCTGTCTCCTTCATGAAC 59.276 55.000 3.38 0.00 0.00 3.18
166 171 0.976641 TCTCCTTCATGAACGTGCCT 59.023 50.000 3.38 0.00 0.00 4.75
191 196 0.608035 GGTGAGTTTTGGGGCGATGA 60.608 55.000 0.00 0.00 0.00 2.92
202 207 1.153745 GGCGATGACGAGTCTGCTT 60.154 57.895 4.78 0.00 42.66 3.91
220 225 0.387622 TTCGTTGGTAGGCGTTCGAG 60.388 55.000 0.00 0.00 0.00 4.04
525 533 2.374170 AGGAGGTTGTATCCGTTTTGGT 59.626 45.455 0.00 0.00 42.02 3.67
548 556 1.303561 GCCCATGGAGCTGACAACA 60.304 57.895 15.22 0.00 0.00 3.33
613 623 2.738846 GTGTCACTGAGCGATGAATTGT 59.261 45.455 0.00 0.00 0.00 2.71
749 770 3.195396 AGCTGTTTTGTTTTTCTGCTCCA 59.805 39.130 0.00 0.00 31.48 3.86
776 797 2.575735 TGGGTTGATGCTGTAATCCTGA 59.424 45.455 0.00 0.00 0.00 3.86
852 873 0.179012 AAAAGAGAAACGGGCCGGAA 60.179 50.000 31.78 0.00 0.00 4.30
854 875 0.906775 AAGAGAAACGGGCCGGAATA 59.093 50.000 31.78 0.00 0.00 1.75
856 877 1.012086 GAGAAACGGGCCGGAATAAC 58.988 55.000 31.78 14.42 0.00 1.89
857 878 0.393402 AGAAACGGGCCGGAATAACC 60.393 55.000 31.78 11.37 0.00 2.85
858 879 1.378882 GAAACGGGCCGGAATAACCC 61.379 60.000 31.78 4.43 40.51 4.11
862 883 2.515290 GGCCGGAATAACCCACCG 60.515 66.667 5.05 0.00 45.24 4.94
865 886 2.587889 CGGAATAACCCACCGGCT 59.412 61.111 0.00 0.00 42.48 5.52
866 887 1.523032 CGGAATAACCCACCGGCTC 60.523 63.158 0.00 0.00 42.48 4.70
894 919 1.340211 CCTTAAATACACGCCCCACCA 60.340 52.381 0.00 0.00 0.00 4.17
897 922 0.608035 AAATACACGCCCCACCACAG 60.608 55.000 0.00 0.00 0.00 3.66
904 929 3.556306 CCCCACCACAGACACGGT 61.556 66.667 0.00 0.00 35.27 4.83
906 931 2.802724 CCCACCACAGACACGGTCA 61.803 63.158 6.78 0.00 34.60 4.02
907 932 1.371183 CCACCACAGACACGGTCAT 59.629 57.895 6.78 0.00 34.60 3.06
908 933 0.606096 CCACCACAGACACGGTCATA 59.394 55.000 6.78 0.00 34.60 2.15
916 949 1.684450 AGACACGGTCATACACACACA 59.316 47.619 6.78 0.00 34.60 3.72
923 956 3.462982 GGTCATACACACACACACAAGA 58.537 45.455 0.00 0.00 0.00 3.02
924 957 3.874543 GGTCATACACACACACACAAGAA 59.125 43.478 0.00 0.00 0.00 2.52
925 958 4.260620 GGTCATACACACACACACAAGAAC 60.261 45.833 0.00 0.00 0.00 3.01
927 960 2.087501 ACACACACACACAAGAACGA 57.912 45.000 0.00 0.00 0.00 3.85
929 962 1.729517 CACACACACACAAGAACGACA 59.270 47.619 0.00 0.00 0.00 4.35
944 977 2.919228 ACGACAAGCTTCTTTCTGGTT 58.081 42.857 0.00 0.00 0.00 3.67
952 985 0.882927 TTCTTTCTGGTTGTCCGGCG 60.883 55.000 0.00 0.00 39.81 6.46
968 1001 2.579787 CGAGCTCCTACAACCGCG 60.580 66.667 8.47 0.00 0.00 6.46
976 1009 1.500844 CTACAACCGCGAGTCTCGT 59.499 57.895 22.61 5.15 42.81 4.18
1019 1052 0.969917 ATGGCCAGCCGCAATGTTAA 60.970 50.000 13.05 0.00 40.31 2.01
1026 1059 2.937003 CGCAATGTTAACGGCGCG 60.937 61.111 20.72 18.95 43.14 6.86
1027 1060 2.575789 GCAATGTTAACGGCGCGG 60.576 61.111 14.03 14.03 0.00 6.46
1029 1062 3.050876 AATGTTAACGGCGCGGCA 61.051 55.556 32.60 12.39 0.00 5.69
1193 1229 3.732048 TTCCCCCAAACCTATTGTCTC 57.268 47.619 0.00 0.00 0.00 3.36
1205 1241 6.166984 ACCTATTGTCTCACATGGTATCAG 57.833 41.667 0.00 0.00 29.37 2.90
1226 1262 2.680339 GACTAGGTTACGTACGCTTCCT 59.320 50.000 22.46 22.46 0.00 3.36
1237 1273 1.074951 CGCTTCCTCCCAAACCCTT 59.925 57.895 0.00 0.00 0.00 3.95
1238 1274 1.244019 CGCTTCCTCCCAAACCCTTG 61.244 60.000 0.00 0.00 0.00 3.61
1277 1328 3.893763 CCGCCGCATCGTCTCTCT 61.894 66.667 0.00 0.00 0.00 3.10
1295 1346 4.284860 CTCCGGATCGCATCGCCA 62.285 66.667 3.57 0.00 0.00 5.69
1315 1366 2.670592 ATGTCTTGCGCTGCTGCA 60.671 55.556 16.29 13.52 44.61 4.41
1381 1432 4.301027 CTATCCCGGCCGCTGGAC 62.301 72.222 23.28 0.00 32.36 4.02
1438 1489 2.501610 GGATCCCTCTTCGCGCTT 59.498 61.111 5.56 0.00 0.00 4.68
1471 1522 4.028490 TTGCCCGGACGGATGCTT 62.028 61.111 13.13 0.00 37.50 3.91
1531 1582 3.591254 GACCGCCGTCTTGCCTCTT 62.591 63.158 0.00 0.00 35.99 2.85
1707 1782 1.764723 TCACTTCGGCCATCTCATCAT 59.235 47.619 2.24 0.00 0.00 2.45
1744 1819 3.531538 GGACAATTACATCTTCTGGCGA 58.468 45.455 0.00 0.00 0.00 5.54
1796 1871 0.037326 CCTGCTTGGCTAAGTCGACA 60.037 55.000 19.50 0.00 36.27 4.35
1813 1893 3.080121 AGCTCTCTCCCTTGCCCG 61.080 66.667 0.00 0.00 0.00 6.13
1872 1952 2.982130 GGCTCACCGTGTCTGGAT 59.018 61.111 0.00 0.00 0.00 3.41
1882 1962 1.308128 TGTCTGGATGGGGCAGGAT 60.308 57.895 0.00 0.00 0.00 3.24
1908 1988 1.967779 GAACCTCTCCTCCATCTAGGC 59.032 57.143 0.00 0.00 36.51 3.93
1975 2056 0.107268 TCATGAGGCATGGACCATCG 59.893 55.000 3.21 1.79 41.66 3.84
2013 2094 2.100631 GCAGTCATAGGCGCGTGTT 61.101 57.895 13.84 0.00 0.00 3.32
2015 2096 0.796312 CAGTCATAGGCGCGTGTTTT 59.204 50.000 13.84 0.00 0.00 2.43
2065 2146 3.883744 AAGCTTGACTCCACGGCCG 62.884 63.158 26.86 26.86 0.00 6.13
2076 2157 3.145551 ACGGCCGCGGAGTTCTAT 61.146 61.111 33.48 2.54 0.00 1.98
2199 2280 6.832384 AGTATGATGCTTTGGTTGAGATCATT 59.168 34.615 0.00 0.00 33.63 2.57
2248 2329 3.788227 TGGCACATGAGGTTTACTCTT 57.212 42.857 0.00 0.00 46.72 2.85
2262 2343 0.116143 ACTCTTGCCTCCTCCTCACT 59.884 55.000 0.00 0.00 0.00 3.41
2314 2395 0.394488 CAGTCACGGCTCCCTCTCTA 60.394 60.000 0.00 0.00 0.00 2.43
2357 2438 2.750350 CAACTCGTCCAAGGGGCT 59.250 61.111 0.00 0.00 0.00 5.19
2358 2439 1.073199 CAACTCGTCCAAGGGGCTT 59.927 57.895 0.00 0.00 0.00 4.35
2361 2442 3.665675 CTCGTCCAAGGGGCTTCCG 62.666 68.421 0.00 0.00 41.52 4.30
2387 2468 3.775202 CTTCGTCTTCATCATCTTCGGT 58.225 45.455 0.00 0.00 0.00 4.69
2425 2506 1.543896 ATACCAGGGGCAGGTGGTT 60.544 57.895 9.59 0.00 45.17 3.67
2449 2530 1.089481 CGTGTGTCAGTTGTGTGGCT 61.089 55.000 0.00 0.00 0.00 4.75
2531 2612 1.887854 CAATGATGGCAAGGACACACA 59.112 47.619 0.00 0.00 0.00 3.72
2568 2649 1.913951 TTGCCATGGCTGATCGTCCT 61.914 55.000 35.53 0.00 42.51 3.85
2586 2667 4.326766 GCGCCGCAGAAGCAACAA 62.327 61.111 3.15 0.00 42.27 2.83
2587 2668 2.127118 CGCCGCAGAAGCAACAAG 60.127 61.111 0.00 0.00 42.27 3.16
2588 2669 2.256461 GCCGCAGAAGCAACAAGG 59.744 61.111 0.00 0.00 42.27 3.61
2589 2670 2.260869 GCCGCAGAAGCAACAAGGA 61.261 57.895 0.00 0.00 42.27 3.36
2590 2671 1.576421 CCGCAGAAGCAACAAGGAC 59.424 57.895 0.00 0.00 42.27 3.85
2651 2732 2.119495 GTACATGGACTCTGGGGTGAT 58.881 52.381 0.00 0.00 0.00 3.06
2668 2749 2.230994 GATGGAGCACCTGACGAGCA 62.231 60.000 0.71 0.00 37.04 4.26
2690 2771 1.003580 GATGGGGAAGCTTCACACTCA 59.996 52.381 29.13 18.45 30.30 3.41
2765 2846 5.121811 GCACATCTCTCATATTGGTCAAGT 58.878 41.667 0.00 0.00 0.00 3.16
2817 2899 3.679980 GTCTTCAGCTTCGCAATGTTCTA 59.320 43.478 0.00 0.00 0.00 2.10
2833 2915 6.611613 ATGTTCTAAGAGTTCCATCTGTGA 57.388 37.500 0.00 0.00 0.00 3.58
2834 2916 5.784177 TGTTCTAAGAGTTCCATCTGTGAC 58.216 41.667 0.00 0.00 0.00 3.67
2838 2920 4.630644 AAGAGTTCCATCTGTGACACAT 57.369 40.909 9.11 0.00 0.00 3.21
2868 2950 7.509546 TCTTCTTTCAGTTCCTAAACTCACAT 58.490 34.615 0.00 0.00 43.99 3.21
2999 3081 4.592192 CATCCTGGCGCCGATCGT 62.592 66.667 23.90 3.34 41.07 3.73
3187 3269 1.346722 TCCTTTTTCGGAGTCCAGTCC 59.653 52.381 10.49 0.00 0.00 3.85
3227 3309 7.857885 CCTTTAGAACTTGTGTTTTCAGATGTC 59.142 37.037 0.00 0.00 36.39 3.06
3242 3324 0.842030 ATGTCTGGGGTCCTGCTCAA 60.842 55.000 0.00 0.00 0.00 3.02
3252 3334 2.224402 GGTCCTGCTCAAACTTCTGTCT 60.224 50.000 0.00 0.00 0.00 3.41
3275 3357 8.499162 GTCTGTGGTCACAATTATTATATCAGC 58.501 37.037 5.27 0.00 41.33 4.26
3762 3844 5.163764 CGTTTAGCATGTCCACATACACATT 60.164 40.000 0.00 0.00 34.26 2.71
3842 3924 2.124151 GCCCATGCATCGGTTCCT 60.124 61.111 12.26 0.00 37.47 3.36
3848 3930 0.451783 ATGCATCGGTTCCTTTTCGC 59.548 50.000 0.00 0.00 0.00 4.70
3899 3981 4.039973 TGTTTTCTCATCAACCGTACTCCT 59.960 41.667 0.00 0.00 0.00 3.69
3939 4021 3.601443 AGACTCCCATTGAAGTTCTCG 57.399 47.619 4.17 0.00 0.00 4.04
4036 5041 2.686558 CGCAAGCTTGAGTTTTGCTA 57.313 45.000 30.39 0.00 43.70 3.49
4037 5042 2.998772 CGCAAGCTTGAGTTTTGCTAA 58.001 42.857 30.39 0.00 43.70 3.09
4045 5050 6.867550 AGCTTGAGTTTTGCTAAAAGAAGTT 58.132 32.000 0.00 0.00 35.05 2.66
4047 5052 8.466798 AGCTTGAGTTTTGCTAAAAGAAGTTTA 58.533 29.630 0.00 0.00 35.05 2.01
4099 5104 8.641498 AAAGGATACAAATGTCTTCATGTTCT 57.359 30.769 0.00 0.00 41.41 3.01
4133 5138 7.413328 CGTGTTTATATATCTCGGGATGTCGTA 60.413 40.741 8.42 0.00 33.71 3.43
4313 5318 3.282885 CTTGGAGATTTTAGAGGCACCC 58.717 50.000 0.00 0.00 0.00 4.61
4344 5349 2.125147 CGCCCTCGCCTCAATTGA 60.125 61.111 8.12 8.12 0.00 2.57
4356 5361 0.109532 TCAATTGACGGCACCTCCAA 59.890 50.000 3.38 0.00 34.01 3.53
4411 5416 1.938657 CTCGAGTCTCGTGCCCATGT 61.939 60.000 21.15 0.00 41.35 3.21
4428 5433 0.034767 TGTACGACCCCTCGATGACT 60.035 55.000 0.00 0.00 43.06 3.41
4537 5592 4.722700 GCCGGCCTTGCTTCTGGA 62.723 66.667 18.11 0.00 0.00 3.86
4547 5602 3.003173 CTTCTGGAGACCGGGCCA 61.003 66.667 1.76 8.41 0.00 5.36
4553 5608 4.083862 GAGACCGGGCCACTGTCC 62.084 72.222 1.76 0.00 0.00 4.02
4592 5647 3.214123 CCGTCGCCTATCACCGGA 61.214 66.667 9.46 0.00 41.08 5.14
4715 5800 2.359230 GTTGGCTCTTCTGGCGCT 60.359 61.111 7.64 0.00 35.06 5.92
4833 5918 2.554370 TGGTACAGTTGCCTGGTTAC 57.446 50.000 0.00 0.00 43.36 2.50
4892 5978 1.221466 GCCGCGCATGTATCAAGCTA 61.221 55.000 8.75 0.00 0.00 3.32
4937 6025 0.250640 GGCCATGGAGCAGGAGTATG 60.251 60.000 18.40 0.00 0.00 2.39
4970 6058 4.433615 TCGCAATAAGACATGGACTCTTC 58.566 43.478 0.00 0.00 0.00 2.87
5173 6261 5.407084 GCTTCTTCTCTCTCTTGTTGTTACC 59.593 44.000 0.00 0.00 0.00 2.85
5241 6330 1.640917 GTGTGTTGGAGGAGGAGGTA 58.359 55.000 0.00 0.00 0.00 3.08
5259 6348 0.830648 TATATATGCGCCAGCCTCCC 59.169 55.000 4.18 0.00 44.33 4.30
5391 6482 1.470098 GCTCATGGTTTTGCATCGTCT 59.530 47.619 0.00 0.00 0.00 4.18
5478 6569 7.379059 TGTGGATGATATTATTCTGGTCAGT 57.621 36.000 0.00 0.00 0.00 3.41
5601 6692 0.460987 CTCGGGCTGATGGTCTTGTC 60.461 60.000 0.00 0.00 0.00 3.18
5646 6737 4.577677 TTGTTGCAGCGGGCTGGA 62.578 61.111 21.10 16.44 45.15 3.86
5668 6759 0.110373 GCTTAAGTGCAAACCGACGG 60.110 55.000 13.61 13.61 0.00 4.79
5676 6767 2.030958 CAAACCGACGGCTACACCC 61.031 63.158 15.39 0.00 33.26 4.61
5677 6768 2.509651 AAACCGACGGCTACACCCA 61.510 57.895 15.39 0.00 33.26 4.51
5678 6769 1.833787 AAACCGACGGCTACACCCAT 61.834 55.000 15.39 0.00 33.26 4.00
5679 6770 2.202878 CCGACGGCTACACCCATG 60.203 66.667 0.00 0.00 33.26 3.66
5745 6838 0.605083 TCTTCTGCTGATGCGACAGT 59.395 50.000 10.73 0.00 43.34 3.55
5746 6839 1.001293 TCTTCTGCTGATGCGACAGTT 59.999 47.619 10.73 0.00 43.34 3.16
5908 7001 0.038526 GATTCACGGTGTCTCACGGT 60.039 55.000 8.17 7.15 46.09 4.83
5919 7012 3.435327 GTGTCTCACGGTTTGCATATTCA 59.565 43.478 0.00 0.00 0.00 2.57
5984 7077 2.189499 GCTGGCAATCCGGATGACC 61.189 63.158 19.95 22.00 41.45 4.02
5985 7078 1.224315 CTGGCAATCCGGATGACCA 59.776 57.895 28.18 28.18 41.45 4.02
6019 7113 2.890945 GGGTTATGCTGTGTTCTTTGGT 59.109 45.455 0.00 0.00 0.00 3.67
6124 7218 3.031013 TGCCACTTCGGAGATTATCTGA 58.969 45.455 0.00 0.00 41.78 3.27
6133 7227 5.681639 TCGGAGATTATCTGAGTACAGTCA 58.318 41.667 0.00 0.00 43.81 3.41
6251 7345 2.541999 GCCCGAACGAAACACATTGAAA 60.542 45.455 0.00 0.00 0.00 2.69
6348 7442 1.072806 TGCAGACATCTTCACCAAGCT 59.927 47.619 0.00 0.00 0.00 3.74
6392 7486 2.513897 GCCGGCGCAATCTTACCT 60.514 61.111 12.58 0.00 34.03 3.08
6431 7525 2.119495 GTGGCTAAGATTGAGGGAGGA 58.881 52.381 0.00 0.00 0.00 3.71
6480 7574 7.504922 TTACACGTGTATATTGTAACGTTCC 57.495 36.000 27.82 0.00 46.27 3.62
6586 7749 0.394565 CTTAGCTTCATCCTCCCCGG 59.605 60.000 0.00 0.00 0.00 5.73
6587 7750 0.326238 TTAGCTTCATCCTCCCCGGT 60.326 55.000 0.00 0.00 0.00 5.28
6604 7789 2.061773 CGGTCAACTAGAGCAACACTG 58.938 52.381 0.00 0.00 44.97 3.66
6616 7801 1.404851 GCAACACTGCTACTCCCTCTC 60.405 57.143 0.00 0.00 45.74 3.20
6622 7863 4.076394 CACTGCTACTCCCTCTCTATACC 58.924 52.174 0.00 0.00 0.00 2.73
6639 7880 7.014326 TCTCTATACCTGTGATGAATAACGCTT 59.986 37.037 0.00 0.00 0.00 4.68
6643 7884 5.670485 ACCTGTGATGAATAACGCTTCATA 58.330 37.500 8.05 0.00 44.00 2.15
6644 7885 6.291377 ACCTGTGATGAATAACGCTTCATAT 58.709 36.000 8.05 0.00 44.00 1.78
6647 7888 9.586435 CCTGTGATGAATAACGCTTCATATATA 57.414 33.333 8.05 0.00 44.00 0.86
6659 7900 8.153479 ACGCTTCATATATAATTTGCTCAACA 57.847 30.769 0.00 0.00 0.00 3.33
6661 7902 8.285394 CGCTTCATATATAATTTGCTCAACACT 58.715 33.333 0.00 0.00 0.00 3.55
6669 7910 4.732285 ATTTGCTCAACACTAAGACACG 57.268 40.909 0.00 0.00 0.00 4.49
6670 7911 1.497991 TGCTCAACACTAAGACACGC 58.502 50.000 0.00 0.00 0.00 5.34
6671 7912 1.068588 TGCTCAACACTAAGACACGCT 59.931 47.619 0.00 0.00 0.00 5.07
6672 7913 1.721926 GCTCAACACTAAGACACGCTC 59.278 52.381 0.00 0.00 0.00 5.03
6673 7914 2.608261 GCTCAACACTAAGACACGCTCT 60.608 50.000 0.00 0.00 0.00 4.09
6674 7915 2.983136 CTCAACACTAAGACACGCTCTG 59.017 50.000 0.00 0.00 0.00 3.35
6676 7917 3.067601 TCAACACTAAGACACGCTCTGAA 59.932 43.478 0.00 0.00 0.00 3.02
6677 7918 3.728076 ACACTAAGACACGCTCTGAAA 57.272 42.857 0.00 0.00 0.00 2.69
6678 7919 3.381949 ACACTAAGACACGCTCTGAAAC 58.618 45.455 0.00 0.00 0.00 2.78
6681 7922 4.270084 CACTAAGACACGCTCTGAAACAAA 59.730 41.667 0.00 0.00 0.00 2.83
6682 7923 3.675467 AAGACACGCTCTGAAACAAAC 57.325 42.857 0.00 0.00 0.00 2.93
6684 7925 1.668751 GACACGCTCTGAAACAAACCA 59.331 47.619 0.00 0.00 0.00 3.67
6685 7926 2.088423 ACACGCTCTGAAACAAACCAA 58.912 42.857 0.00 0.00 0.00 3.67
6686 7927 2.097466 ACACGCTCTGAAACAAACCAAG 59.903 45.455 0.00 0.00 0.00 3.61
6687 7928 2.354510 CACGCTCTGAAACAAACCAAGA 59.645 45.455 0.00 0.00 0.00 3.02
6688 7929 3.013921 ACGCTCTGAAACAAACCAAGAA 58.986 40.909 0.00 0.00 0.00 2.52
6689 7930 3.065371 ACGCTCTGAAACAAACCAAGAAG 59.935 43.478 0.00 0.00 0.00 2.85
6690 7931 3.548818 CGCTCTGAAACAAACCAAGAAGG 60.549 47.826 0.00 0.00 45.67 3.46
6691 7932 3.632145 GCTCTGAAACAAACCAAGAAGGA 59.368 43.478 0.00 0.00 41.22 3.36
6693 7934 5.734503 GCTCTGAAACAAACCAAGAAGGAAG 60.735 44.000 0.00 0.00 41.22 3.46
6694 7935 4.097892 TCTGAAACAAACCAAGAAGGAAGC 59.902 41.667 0.00 0.00 41.22 3.86
6695 7936 3.132111 TGAAACAAACCAAGAAGGAAGCC 59.868 43.478 0.00 0.00 41.22 4.35
6696 7937 1.318576 ACAAACCAAGAAGGAAGCCG 58.681 50.000 0.00 0.00 41.22 5.52
6697 7938 1.318576 CAAACCAAGAAGGAAGCCGT 58.681 50.000 0.00 0.00 41.22 5.68
6698 7939 1.681264 CAAACCAAGAAGGAAGCCGTT 59.319 47.619 0.00 0.00 41.22 4.44
6699 7940 1.605753 AACCAAGAAGGAAGCCGTTC 58.394 50.000 0.00 0.00 41.22 3.95
6700 7941 0.602905 ACCAAGAAGGAAGCCGTTCG 60.603 55.000 0.00 0.00 40.87 3.95
6701 7942 0.320421 CCAAGAAGGAAGCCGTTCGA 60.320 55.000 0.00 0.00 40.87 3.71
6702 7943 1.676014 CCAAGAAGGAAGCCGTTCGAT 60.676 52.381 0.00 0.00 40.87 3.59
6703 7944 1.394917 CAAGAAGGAAGCCGTTCGATG 59.605 52.381 0.00 0.00 40.87 3.84
6704 7945 0.895530 AGAAGGAAGCCGTTCGATGA 59.104 50.000 0.00 0.00 40.87 2.92
6705 7946 1.275291 AGAAGGAAGCCGTTCGATGAA 59.725 47.619 0.00 0.00 40.87 2.57
6706 7947 2.073816 GAAGGAAGCCGTTCGATGAAA 58.926 47.619 0.00 0.00 32.92 2.69
6707 7948 1.439679 AGGAAGCCGTTCGATGAAAC 58.560 50.000 0.00 0.00 32.92 2.78
6708 7949 1.002087 AGGAAGCCGTTCGATGAAACT 59.998 47.619 0.00 0.00 32.92 2.66
6709 7950 2.232941 AGGAAGCCGTTCGATGAAACTA 59.767 45.455 0.00 0.00 32.92 2.24
6710 7951 2.603560 GGAAGCCGTTCGATGAAACTAG 59.396 50.000 0.00 0.00 32.92 2.57
6711 7952 3.508762 GAAGCCGTTCGATGAAACTAGA 58.491 45.455 0.00 0.00 0.00 2.43
6712 7953 3.587797 AGCCGTTCGATGAAACTAGAA 57.412 42.857 0.00 0.00 0.00 2.10
6713 7954 3.921677 AGCCGTTCGATGAAACTAGAAA 58.078 40.909 0.00 0.00 0.00 2.52
6714 7955 4.312443 AGCCGTTCGATGAAACTAGAAAA 58.688 39.130 0.00 0.00 0.00 2.29
6715 7956 4.753107 AGCCGTTCGATGAAACTAGAAAAA 59.247 37.500 0.00 0.00 0.00 1.94
6739 7980 6.391227 AAATTACTCACAGTTTTCACAGGG 57.609 37.500 0.00 0.00 0.00 4.45
6740 7981 4.497291 TTACTCACAGTTTTCACAGGGT 57.503 40.909 0.00 0.00 0.00 4.34
6741 7982 2.919228 ACTCACAGTTTTCACAGGGTC 58.081 47.619 0.00 0.00 0.00 4.46
6749 7990 4.037565 CAGTTTTCACAGGGTCCCTTTTAC 59.962 45.833 8.08 1.11 0.00 2.01
6753 7994 1.004394 CACAGGGTCCCTTTTACCTCC 59.996 57.143 8.08 0.00 37.18 4.30
6767 8008 6.261826 CCTTTTACCTCCTCTTTGCATATGAG 59.738 42.308 6.97 0.00 0.00 2.90
6770 8011 4.293494 ACCTCCTCTTTGCATATGAGAGA 58.707 43.478 17.39 10.68 39.36 3.10
6774 8015 7.098477 CCTCCTCTTTGCATATGAGAGATAAG 58.902 42.308 17.39 12.29 39.36 1.73
6798 8039 9.608718 AAGAGTATGTAATAGATCCTAGCCTTT 57.391 33.333 0.00 0.00 0.00 3.11
6799 8040 9.030452 AGAGTATGTAATAGATCCTAGCCTTTG 57.970 37.037 0.00 0.00 0.00 2.77
6800 8041 8.958060 AGTATGTAATAGATCCTAGCCTTTGA 57.042 34.615 0.00 0.00 0.00 2.69
6801 8042 9.554053 AGTATGTAATAGATCCTAGCCTTTGAT 57.446 33.333 0.00 0.00 0.00 2.57
6821 8062 6.938698 TGATTTTACTAAGTGGTGGGTCTA 57.061 37.500 0.00 0.00 0.00 2.59
6822 8063 7.319052 TGATTTTACTAAGTGGTGGGTCTAA 57.681 36.000 0.00 0.00 0.00 2.10
6825 8066 5.990120 TTACTAAGTGGTGGGTCTAAGTC 57.010 43.478 0.00 0.00 0.00 3.01
6827 8068 1.713297 AAGTGGTGGGTCTAAGTCGT 58.287 50.000 0.00 0.00 0.00 4.34
6829 8070 1.343465 AGTGGTGGGTCTAAGTCGTTG 59.657 52.381 0.00 0.00 0.00 4.10
6842 8083 7.306807 GGTCTAAGTCGTTGTTACTTTGTTACC 60.307 40.741 0.00 0.00 38.18 2.85
6846 8087 4.050553 TCGTTGTTACTTTGTTACCTCCG 58.949 43.478 0.00 0.00 0.00 4.63
6849 8090 4.420522 TGTTACTTTGTTACCTCCGGTT 57.579 40.909 0.00 0.00 37.09 4.44
6851 8092 5.923204 TGTTACTTTGTTACCTCCGGTTTA 58.077 37.500 0.00 0.00 37.09 2.01
6862 8103 4.395625 ACCTCCGGTTTAAAAAGAAGAGG 58.604 43.478 0.00 14.67 44.25 3.69
6871 8112 5.774102 TTAAAAAGAAGAGGTAGGAGGGG 57.226 43.478 0.00 0.00 0.00 4.79
6889 8130 1.204704 GGGCCATGTTAAACTTGCTCC 59.795 52.381 4.39 0.00 0.00 4.70
6893 8134 5.130350 GGCCATGTTAAACTTGCTCCTATA 58.870 41.667 0.00 0.00 0.00 1.31
6930 8171 7.775120 AGATGTTGATTTTATTAAGCAGTGGG 58.225 34.615 0.00 0.00 0.00 4.61
6933 8174 7.375053 TGTTGATTTTATTAAGCAGTGGGTTC 58.625 34.615 0.00 0.00 35.99 3.62
6934 8175 7.014711 TGTTGATTTTATTAAGCAGTGGGTTCA 59.985 33.333 0.00 0.00 35.99 3.18
6940 8181 8.644374 TTTATTAAGCAGTGGGTTCAAGTAAT 57.356 30.769 0.00 0.00 35.99 1.89
6948 8193 6.001460 CAGTGGGTTCAAGTAATTCTTACCA 58.999 40.000 0.00 0.00 36.82 3.25
6982 8227 8.138928 TCCATGTGAAAAGAAGAGATAAGAGA 57.861 34.615 0.00 0.00 0.00 3.10
6984 8229 8.663911 CCATGTGAAAAGAAGAGATAAGAGAAC 58.336 37.037 0.00 0.00 0.00 3.01
6986 8231 7.735917 TGTGAAAAGAAGAGATAAGAGAACCA 58.264 34.615 0.00 0.00 0.00 3.67
6987 8232 7.657761 TGTGAAAAGAAGAGATAAGAGAACCAC 59.342 37.037 0.00 0.00 0.00 4.16
6988 8233 7.875554 GTGAAAAGAAGAGATAAGAGAACCACT 59.124 37.037 0.00 0.00 0.00 4.00
6989 8234 7.875041 TGAAAAGAAGAGATAAGAGAACCACTG 59.125 37.037 0.00 0.00 0.00 3.66
6990 8235 6.926630 AAGAAGAGATAAGAGAACCACTGT 57.073 37.500 0.00 0.00 0.00 3.55
6991 8236 6.926630 AGAAGAGATAAGAGAACCACTGTT 57.073 37.500 0.00 0.00 37.42 3.16
6992 8237 8.423906 AAGAAGAGATAAGAGAACCACTGTTA 57.576 34.615 0.00 0.00 38.42 2.41
6993 8238 8.423906 AGAAGAGATAAGAGAACCACTGTTAA 57.576 34.615 0.00 0.00 37.77 2.01
6994 8239 8.871125 AGAAGAGATAAGAGAACCACTGTTAAA 58.129 33.333 0.00 0.00 37.77 1.52
6995 8240 9.490379 GAAGAGATAAGAGAACCACTGTTAAAA 57.510 33.333 0.00 0.00 37.77 1.52
7028 8273 6.552445 AAGAGACTGGAAACATACTGCTAT 57.448 37.500 0.00 0.00 41.51 2.97
7030 8275 7.661536 AGAGACTGGAAACATACTGCTATAA 57.338 36.000 0.00 0.00 41.51 0.98
7031 8276 8.079211 AGAGACTGGAAACATACTGCTATAAA 57.921 34.615 0.00 0.00 41.51 1.40
7187 9266 8.740123 TTGTCTCTCTATTAGTACTTCCTCTG 57.260 38.462 0.00 0.00 0.00 3.35
7189 9268 7.771361 TGTCTCTCTATTAGTACTTCCTCTGTG 59.229 40.741 0.00 0.00 0.00 3.66
7190 9269 7.988599 GTCTCTCTATTAGTACTTCCTCTGTGA 59.011 40.741 0.00 0.00 0.00 3.58
7201 9280 9.134055 AGTACTTCCTCTGTGAACTATTATACC 57.866 37.037 0.00 0.00 0.00 2.73
7204 9283 8.478877 ACTTCCTCTGTGAACTATTATACCAAG 58.521 37.037 0.00 0.00 0.00 3.61
7205 9284 8.603898 TTCCTCTGTGAACTATTATACCAAGA 57.396 34.615 0.00 0.00 0.00 3.02
7206 9285 8.008513 TCCTCTGTGAACTATTATACCAAGAC 57.991 38.462 0.00 0.00 0.00 3.01
7209 9288 9.823647 CTCTGTGAACTATTATACCAAGACATT 57.176 33.333 0.00 0.00 0.00 2.71
7225 9304 8.986991 ACCAAGACATTTTAGATCACTAGAGAT 58.013 33.333 1.93 1.93 0.00 2.75
7226 9305 9.258826 CCAAGACATTTTAGATCACTAGAGATG 57.741 37.037 7.45 0.00 0.00 2.90
7230 9309 9.685828 GACATTTTAGATCACTAGAGATGGTAC 57.314 37.037 7.45 0.00 0.00 3.34
7234 9313 8.921353 TTTAGATCACTAGAGATGGTACTACC 57.079 38.462 7.45 0.00 39.22 3.18
7236 9315 7.156694 AGATCACTAGAGATGGTACTACCTT 57.843 40.000 7.45 0.00 39.58 3.50
7313 9464 1.880646 CGAGGGGTAACTTGTTGTGGG 60.881 57.143 0.00 0.00 0.00 4.61
7330 9481 1.029408 GGGGTTGATGTGCGTGCATA 61.029 55.000 0.00 0.00 0.00 3.14
7332 9486 1.405105 GGGTTGATGTGCGTGCATAAT 59.595 47.619 0.00 0.00 0.00 1.28
7395 9549 1.669440 GGGTCCTTGTACGTGCTGA 59.331 57.895 4.97 0.00 0.00 4.26
7459 9613 1.940883 TACCGGTACAAGCTGCGGAG 61.941 60.000 11.16 0.00 0.00 4.63
7463 9617 4.096003 TACAAGCTGCGGAGGGCC 62.096 66.667 5.93 0.00 42.61 5.80
7562 9716 2.646175 CGAGCTCAAGAACCGGGGA 61.646 63.158 15.40 0.00 0.00 4.81
7615 9769 1.539869 CGAGGATGGGGATGGGGAT 60.540 63.158 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.529992 AAACGGCGCCTACAGATAGC 60.530 55.000 26.68 0.00 0.00 2.97
33 34 1.669760 CCAAAACGGCGCCTACAGA 60.670 57.895 26.68 0.00 0.00 3.41
81 86 2.357517 CGCCCAGAAACGAGCAGT 60.358 61.111 0.00 0.00 0.00 4.40
145 150 1.608025 GGCACGTTCATGAAGGAGACA 60.608 52.381 29.52 0.00 0.00 3.41
160 165 0.535102 AACTCACCAAAGGAGGCACG 60.535 55.000 0.00 0.00 36.70 5.34
166 171 2.032151 GCCCCAAAACTCACCAAAGGA 61.032 52.381 0.00 0.00 0.00 3.36
191 196 0.956633 TACCAACGAAGCAGACTCGT 59.043 50.000 0.00 0.00 42.20 4.18
202 207 1.210931 CTCGAACGCCTACCAACGA 59.789 57.895 0.00 0.00 0.00 3.85
220 225 2.203294 ACTCCAACCACGCAACCC 60.203 61.111 0.00 0.00 0.00 4.11
460 465 3.790437 CCTCGCCTGGCATGAGGT 61.790 66.667 25.84 0.00 43.48 3.85
525 533 1.381191 TCAGCTCCATGGGCTACGA 60.381 57.895 22.49 15.69 38.03 3.43
548 556 6.126652 ACACCACTAGCAGATTGGAAGAATAT 60.127 38.462 3.46 0.00 34.24 1.28
613 623 0.982852 ATGAAGCCCTCCACCGATCA 60.983 55.000 0.00 0.00 0.00 2.92
749 770 4.634012 TTACAGCATCAACCCACTTACT 57.366 40.909 0.00 0.00 0.00 2.24
776 797 2.279935 TAACAAAGCCATCAACCGGT 57.720 45.000 0.00 0.00 0.00 5.28
864 885 0.883370 GTATTTAAGGGCGGCCGGAG 60.883 60.000 29.38 0.00 0.00 4.63
865 886 1.146707 GTATTTAAGGGCGGCCGGA 59.853 57.895 29.38 11.91 0.00 5.14
866 887 1.153127 TGTATTTAAGGGCGGCCGG 60.153 57.895 29.38 8.95 0.00 6.13
873 898 1.385528 GTGGGGCGTGTATTTAAGGG 58.614 55.000 0.00 0.00 0.00 3.95
876 901 1.073444 TGTGGTGGGGCGTGTATTTAA 59.927 47.619 0.00 0.00 0.00 1.52
894 919 1.684450 TGTGTGTATGACCGTGTCTGT 59.316 47.619 5.77 0.00 33.15 3.41
897 922 1.790623 GTGTGTGTGTATGACCGTGTC 59.209 52.381 0.00 0.00 0.00 3.67
904 929 3.553917 CGTTCTTGTGTGTGTGTGTATGA 59.446 43.478 0.00 0.00 0.00 2.15
906 931 3.554324 GTCGTTCTTGTGTGTGTGTGTAT 59.446 43.478 0.00 0.00 0.00 2.29
907 932 2.924926 GTCGTTCTTGTGTGTGTGTGTA 59.075 45.455 0.00 0.00 0.00 2.90
908 933 1.730064 GTCGTTCTTGTGTGTGTGTGT 59.270 47.619 0.00 0.00 0.00 3.72
916 949 2.906354 AGAAGCTTGTCGTTCTTGTGT 58.094 42.857 2.10 0.00 28.11 3.72
923 956 2.919228 ACCAGAAAGAAGCTTGTCGTT 58.081 42.857 2.10 0.00 0.00 3.85
924 957 2.614057 CAACCAGAAAGAAGCTTGTCGT 59.386 45.455 2.10 0.00 0.00 4.34
925 958 2.614057 ACAACCAGAAAGAAGCTTGTCG 59.386 45.455 2.10 0.00 0.00 4.35
927 960 2.952310 GGACAACCAGAAAGAAGCTTGT 59.048 45.455 2.10 0.00 35.97 3.16
929 962 2.222027 CGGACAACCAGAAAGAAGCTT 58.778 47.619 0.00 0.00 35.59 3.74
944 977 3.138798 GTAGGAGCTCGCCGGACA 61.139 66.667 5.05 0.00 0.00 4.02
952 985 1.226717 CTCGCGGTTGTAGGAGCTC 60.227 63.158 6.13 4.71 0.00 4.09
1014 1047 3.794242 CATGCCGCGCCGTTAACA 61.794 61.111 0.00 0.00 0.00 2.41
1029 1062 3.402681 CAGAGGCCCGTGGACCAT 61.403 66.667 0.00 0.00 0.00 3.55
1062 1095 0.732880 CAGTCTAACAGCCACCGACG 60.733 60.000 0.00 0.00 0.00 5.12
1067 1100 3.718815 GGCTATACAGTCTAACAGCCAC 58.281 50.000 5.57 0.00 46.27 5.01
1070 1103 4.339814 ACAGAGGCTATACAGTCTAACAGC 59.660 45.833 0.00 0.00 36.66 4.40
1071 1104 7.753309 ATACAGAGGCTATACAGTCTAACAG 57.247 40.000 0.00 0.00 36.66 3.16
1140 1174 2.840651 CCTTCAGGGGTGTCTTATCACT 59.159 50.000 0.00 0.00 38.28 3.41
1157 1193 0.673985 GGAAACCAGCACAACCCTTC 59.326 55.000 0.00 0.00 0.00 3.46
1193 1229 5.067413 ACGTAACCTAGTCTGATACCATGTG 59.933 44.000 0.00 0.00 0.00 3.21
1205 1241 2.680339 AGGAAGCGTACGTAACCTAGTC 59.320 50.000 17.90 0.92 0.00 2.59
1226 1262 2.203625 GCTGGCAAGGGTTTGGGA 60.204 61.111 0.00 0.00 34.79 4.37
1267 1318 1.606994 CGATCCGGAGAGAGAGACGAT 60.607 57.143 11.34 0.00 0.00 3.73
1268 1319 0.249531 CGATCCGGAGAGAGAGACGA 60.250 60.000 11.34 0.00 0.00 4.20
1270 1321 0.816018 TGCGATCCGGAGAGAGAGAC 60.816 60.000 11.34 0.00 0.00 3.36
1272 1323 0.521291 GATGCGATCCGGAGAGAGAG 59.479 60.000 11.34 0.00 0.00 3.20
1273 1324 1.231296 CGATGCGATCCGGAGAGAGA 61.231 60.000 11.34 0.00 0.00 3.10
1277 1328 3.978491 GGCGATGCGATCCGGAGA 61.978 66.667 11.34 0.00 0.00 3.71
1295 1346 2.033141 AGCAGCGCAAGACATGGT 59.967 55.556 11.47 0.00 43.02 3.55
1315 1366 3.861797 GCGGTGGTGGATCCGGAT 61.862 66.667 19.21 19.21 45.85 4.18
1423 1474 2.359169 TGGAAGCGCGAAGAGGGAT 61.359 57.895 12.10 0.00 34.27 3.85
1455 1506 4.776322 CAAGCATCCGTCCGGGCA 62.776 66.667 6.96 0.00 34.94 5.36
1464 1515 3.364441 TGTGCACCGCAAGCATCC 61.364 61.111 15.69 0.00 44.79 3.51
1524 1575 4.020617 CCACCAGCGGAAGAGGCA 62.021 66.667 1.50 0.00 0.00 4.75
1729 1804 0.806102 GCGCTCGCCAGAAGATGTAA 60.806 55.000 0.00 0.00 34.56 2.41
1789 1864 0.039035 AAGGGAGAGAGCTGTCGACT 59.961 55.000 17.92 2.38 0.00 4.18
1796 1871 3.080121 CGGGCAAGGGAGAGAGCT 61.080 66.667 0.00 0.00 0.00 4.09
1867 1947 1.454976 CTGATCCTGCCCCATCCAG 59.545 63.158 0.00 0.00 0.00 3.86
1882 1962 1.682684 GGAGGAGAGGTTCGCCTGA 60.683 63.158 6.08 0.00 46.93 3.86
1908 1988 3.726631 GACAGCGGAGAGAGCGACG 62.727 68.421 0.00 0.00 40.04 5.12
2002 2083 2.249896 CGCAAAAACACGCGCCTA 59.750 55.556 5.73 0.00 45.57 3.93
2030 2111 1.294659 CTTCTCACACTCGCCAAGCC 61.295 60.000 0.00 0.00 0.00 4.35
2065 2146 4.119442 TGACCTTGTTATAGAACTCCGC 57.881 45.455 1.39 0.00 36.45 5.54
2121 2202 3.064987 CTCGGAATCGGTGAGCGGT 62.065 63.158 3.57 0.00 36.95 5.68
2199 2280 2.102109 TTGAGTTGCCCCGCTCGTTA 62.102 55.000 0.00 0.00 34.67 3.18
2241 2322 2.180276 GTGAGGAGGAGGCAAGAGTAA 58.820 52.381 0.00 0.00 0.00 2.24
2247 2328 1.548357 GCTCAGTGAGGAGGAGGCAA 61.548 60.000 21.54 0.00 35.41 4.52
2248 2329 1.986757 GCTCAGTGAGGAGGAGGCA 60.987 63.158 21.54 0.00 35.41 4.75
2262 2343 4.724602 GCCTCGACACGCTGCTCA 62.725 66.667 0.00 0.00 0.00 4.26
2314 2395 2.431942 CTTAGTGGCGGCGTTCGT 60.432 61.111 9.37 0.00 41.72 3.85
2357 2438 1.374252 GAAGACGAAGCAGGCGGAA 60.374 57.895 0.00 0.00 0.00 4.30
2358 2439 1.888436 ATGAAGACGAAGCAGGCGGA 61.888 55.000 0.00 0.00 0.00 5.54
2361 2442 1.596727 GATGATGAAGACGAAGCAGGC 59.403 52.381 0.00 0.00 0.00 4.85
2400 2481 2.358619 GCCCCTGGTATGGTTGCA 59.641 61.111 0.00 0.00 0.00 4.08
2407 2488 1.543896 AACCACCTGCCCCTGGTAT 60.544 57.895 0.00 0.00 40.06 2.73
2425 2506 1.153726 ACAACTGACACACGCGTCA 60.154 52.632 9.86 2.86 43.54 4.35
2487 2568 0.790814 GACCAAGAAAACTCCGCTCG 59.209 55.000 0.00 0.00 0.00 5.03
2488 2569 2.171341 AGACCAAGAAAACTCCGCTC 57.829 50.000 0.00 0.00 0.00 5.03
2531 2612 1.132262 CAACCTGACGTGCAAAGTTGT 59.868 47.619 0.00 0.00 36.66 3.32
2586 2667 1.837439 TGAGTGTGTCCTTGTTGTCCT 59.163 47.619 0.00 0.00 0.00 3.85
2587 2668 2.325583 TGAGTGTGTCCTTGTTGTCC 57.674 50.000 0.00 0.00 0.00 4.02
2588 2669 3.251004 GGATTGAGTGTGTCCTTGTTGTC 59.749 47.826 0.00 0.00 0.00 3.18
2589 2670 3.117888 AGGATTGAGTGTGTCCTTGTTGT 60.118 43.478 0.00 0.00 39.28 3.32
2590 2671 3.480470 AGGATTGAGTGTGTCCTTGTTG 58.520 45.455 0.00 0.00 39.28 3.33
2651 2732 2.440385 CTTGCTCGTCAGGTGCTCCA 62.440 60.000 7.70 0.00 35.89 3.86
2668 2749 1.707427 AGTGTGAAGCTTCCCCATCTT 59.293 47.619 23.42 7.72 0.00 2.40
2690 2771 3.072184 GTCAGAGCCATGATAGGGTTCAT 59.928 47.826 0.00 0.00 40.02 2.57
2709 2790 1.003839 GGCGGTGTGGATCTTGTCA 60.004 57.895 0.00 0.00 0.00 3.58
2765 2846 5.449553 TGGCATGTCTAGTGAGAAGAGATA 58.550 41.667 0.00 0.00 31.96 1.98
2817 2899 4.202398 ACATGTGTCACAGATGGAACTCTT 60.202 41.667 18.60 0.00 39.08 2.85
2833 2915 7.227156 AGGAACTGAAAGAAGATTACATGTGT 58.773 34.615 9.11 0.00 37.18 3.72
2834 2916 7.678947 AGGAACTGAAAGAAGATTACATGTG 57.321 36.000 9.11 0.00 37.18 3.21
2838 2920 9.490379 GAGTTTAGGAACTGAAAGAAGATTACA 57.510 33.333 0.00 0.00 45.88 2.41
2868 2950 9.926158 AAATTCACAAAGCACATTATTATCACA 57.074 25.926 0.00 0.00 0.00 3.58
2963 3045 1.076632 CTCCAGACGGTAGAGGCCT 60.077 63.158 3.86 3.86 0.00 5.19
2992 3074 1.726791 CTCCACTGAAAACACGATCGG 59.273 52.381 20.98 10.92 0.00 4.18
2995 3077 2.800544 CGAACTCCACTGAAAACACGAT 59.199 45.455 0.00 0.00 0.00 3.73
2999 3081 1.210967 ACCCGAACTCCACTGAAAACA 59.789 47.619 0.00 0.00 0.00 2.83
3141 3223 1.661463 TGACTCTTCCCCTGCTGAAT 58.339 50.000 0.00 0.00 0.00 2.57
3142 3224 1.556911 GATGACTCTTCCCCTGCTGAA 59.443 52.381 0.00 0.00 0.00 3.02
3187 3269 6.234177 AGTTCTAAAGGATGTTTCACCTCAG 58.766 40.000 0.00 0.00 35.25 3.35
3227 3309 0.111253 AAGTTTGAGCAGGACCCCAG 59.889 55.000 0.00 0.00 0.00 4.45
3242 3324 3.627395 TTGTGACCACAGACAGAAGTT 57.373 42.857 2.92 0.00 42.94 2.66
3252 3334 8.978874 AAGCTGATATAATAATTGTGACCACA 57.021 30.769 0.00 0.00 39.98 4.17
3275 3357 6.536731 AAGCGACTATAAGCATCAATGAAG 57.463 37.500 0.00 0.00 35.48 3.02
3333 3415 7.032580 TGAAACTGAACAAAAATGTCGAACAT 58.967 30.769 0.00 0.00 41.31 2.71
3842 3924 2.622942 AGCATCACTCCAAAAGCGAAAA 59.377 40.909 0.00 0.00 0.00 2.29
3899 3981 6.046593 AGTCTTCATGTTCAAAACACGAGTA 58.953 36.000 0.00 0.00 45.50 2.59
3939 4021 6.490566 AGTGTAATCGGGTTGTTCATTAAC 57.509 37.500 0.00 0.00 36.07 2.01
4047 5052 8.519799 TGAAGAGAGTTGTAACCAAGAAAAAT 57.480 30.769 0.00 0.00 0.00 1.82
4133 5138 5.750352 AGGGAAAAACATGCTCATCAAAT 57.250 34.783 0.00 0.00 0.00 2.32
4313 5318 2.881352 GGCGACGAAGAAGGCGAG 60.881 66.667 0.00 0.00 0.00 5.03
4339 5344 1.545582 CAATTGGAGGTGCCGTCAATT 59.454 47.619 14.28 14.28 39.50 2.32
4344 5349 4.079446 CACAATTGGAGGTGCCGT 57.921 55.556 10.83 0.00 40.66 5.68
4356 5361 1.083806 ATGCGATCGACGTGCACAAT 61.084 50.000 21.57 3.58 42.11 2.71
4411 5416 3.091318 GAGTCATCGAGGGGTCGTA 57.909 57.895 0.00 0.00 0.00 3.43
4526 5566 1.078848 CCCGGTCTCCAGAAGCAAG 60.079 63.158 0.00 0.00 0.00 4.01
4531 5571 3.319198 GTGGCCCGGTCTCCAGAA 61.319 66.667 0.00 0.00 32.15 3.02
4592 5647 1.456705 GCCAGGAGACTCGGGAGAT 60.457 63.158 14.23 0.00 40.21 2.75
4715 5800 0.034198 TTGTTGATGACGGCGGAGAA 59.966 50.000 13.24 0.00 0.00 2.87
4722 5807 1.124297 CGTCGAAGTTGTTGATGACGG 59.876 52.381 4.78 0.00 43.79 4.79
4892 5978 2.158769 TCCAATGAGGAATGCGCATAGT 60.159 45.455 25.61 9.21 45.65 2.12
4937 6025 4.568359 TGTCTTATTGCGAATGAGAGCTTC 59.432 41.667 0.00 0.00 34.62 3.86
5017 6105 5.188434 CCATCAGAATGCCTCTTCACTTTA 58.812 41.667 0.00 0.00 34.76 1.85
5145 6233 2.566724 ACAAGAGAGAGAAGAAGCCTGG 59.433 50.000 0.00 0.00 0.00 4.45
5173 6261 1.792949 CTGACGAAGAAACCAACTCGG 59.207 52.381 0.00 0.00 42.50 4.63
5241 6330 1.604378 GGGAGGCTGGCGCATATAT 59.396 57.895 10.83 0.00 38.10 0.86
5259 6348 1.593006 CGATCCGGATCAGAAAAACCG 59.407 52.381 36.89 20.71 44.16 4.44
5341 6432 1.985447 ATTGCAAGACGAGCATGCCG 61.985 55.000 21.83 21.83 40.36 5.69
5391 6482 5.265191 AGAAATAGTGAGGAGTCAGCAGTA 58.735 41.667 0.00 0.00 31.53 2.74
5601 6692 3.378742 AGGAGTACTTCTACTGCGTCATG 59.621 47.826 0.27 0.00 44.14 3.07
5611 6702 5.938125 GCAACAAATCCAAGGAGTACTTCTA 59.062 40.000 3.45 0.00 37.29 2.10
5646 6737 2.350388 CGTCGGTTTGCACTTAAGCATT 60.350 45.455 1.29 0.00 45.19 3.56
5668 6759 2.213499 GTAGACATGCATGGGTGTAGC 58.787 52.381 29.41 9.79 0.00 3.58
5676 6767 2.976589 TGTCAGTGGTAGACATGCATG 58.023 47.619 25.09 25.09 40.80 4.06
5677 6768 3.261643 TCTTGTCAGTGGTAGACATGCAT 59.738 43.478 0.00 0.00 44.66 3.96
5678 6769 2.632512 TCTTGTCAGTGGTAGACATGCA 59.367 45.455 0.00 0.00 44.66 3.96
5679 6770 3.319137 TCTTGTCAGTGGTAGACATGC 57.681 47.619 0.00 0.00 44.66 4.06
5745 6838 5.072600 AGACCACCAACAATACTCCTGTAAA 59.927 40.000 0.00 0.00 31.80 2.01
5746 6839 4.595781 AGACCACCAACAATACTCCTGTAA 59.404 41.667 0.00 0.00 31.80 2.41
5908 7001 3.013921 GGAGGTCGGTTGAATATGCAAA 58.986 45.455 0.00 0.00 0.00 3.68
5919 7012 0.252284 ACATCCAGAGGAGGTCGGTT 60.252 55.000 0.00 0.00 43.62 4.44
6019 7113 3.068732 CACTCCAGGCGATCAGATTAGAA 59.931 47.826 0.00 0.00 0.00 2.10
6124 7218 1.899814 TCCCGAAGCAATGACTGTACT 59.100 47.619 0.00 0.00 0.00 2.73
6133 7227 2.818751 TACCCAATTCCCGAAGCAAT 57.181 45.000 0.00 0.00 0.00 3.56
6251 7345 4.314961 TCACGCACAAAGTGATAGTCAAT 58.685 39.130 0.58 0.00 42.91 2.57
6348 7442 4.323485 CCTCAAACTGTGGTAGAGGCAATA 60.323 45.833 0.00 0.00 39.38 1.90
6392 7486 7.259088 AGCCACTTCCTAAAGAATCTAGAAA 57.741 36.000 0.00 0.00 36.30 2.52
6509 7613 2.556286 GCACAACCCTCTAAGGTGC 58.444 57.895 0.00 0.00 46.53 5.01
6580 7743 0.543410 TTGCTCTAGTTGACCGGGGA 60.543 55.000 6.32 0.00 0.00 4.81
6604 7789 4.076394 CACAGGTATAGAGAGGGAGTAGC 58.924 52.174 0.00 0.00 0.00 3.58
6605 7790 5.570205 TCACAGGTATAGAGAGGGAGTAG 57.430 47.826 0.00 0.00 0.00 2.57
6606 7791 5.611408 TCATCACAGGTATAGAGAGGGAGTA 59.389 44.000 0.00 0.00 0.00 2.59
6607 7792 4.417183 TCATCACAGGTATAGAGAGGGAGT 59.583 45.833 0.00 0.00 0.00 3.85
6609 7794 5.403558 TTCATCACAGGTATAGAGAGGGA 57.596 43.478 0.00 0.00 0.00 4.20
6610 7795 7.575909 CGTTATTCATCACAGGTATAGAGAGGG 60.576 44.444 0.00 0.00 0.00 4.30
6611 7796 7.309177 CGTTATTCATCACAGGTATAGAGAGG 58.691 42.308 0.00 0.00 0.00 3.69
6613 7798 6.490381 AGCGTTATTCATCACAGGTATAGAGA 59.510 38.462 0.00 0.00 0.00 3.10
6616 7801 6.923508 TGAAGCGTTATTCATCACAGGTATAG 59.076 38.462 0.00 0.00 34.31 1.31
6643 7884 8.604035 CGTGTCTTAGTGTTGAGCAAATTATAT 58.396 33.333 0.00 0.00 0.00 0.86
6644 7885 7.412563 GCGTGTCTTAGTGTTGAGCAAATTATA 60.413 37.037 0.00 0.00 0.00 0.98
6647 7888 4.554723 GCGTGTCTTAGTGTTGAGCAAATT 60.555 41.667 0.00 0.00 0.00 1.82
6648 7889 3.058914 GCGTGTCTTAGTGTTGAGCAAAT 60.059 43.478 0.00 0.00 0.00 2.32
6649 7890 2.286833 GCGTGTCTTAGTGTTGAGCAAA 59.713 45.455 0.00 0.00 0.00 3.68
6650 7891 1.864711 GCGTGTCTTAGTGTTGAGCAA 59.135 47.619 0.00 0.00 0.00 3.91
6651 7892 1.068588 AGCGTGTCTTAGTGTTGAGCA 59.931 47.619 0.00 0.00 0.00 4.26
6653 7894 2.983136 CAGAGCGTGTCTTAGTGTTGAG 59.017 50.000 0.00 0.00 30.64 3.02
6654 7895 2.621526 TCAGAGCGTGTCTTAGTGTTGA 59.378 45.455 0.00 0.00 30.64 3.18
6655 7896 3.013276 TCAGAGCGTGTCTTAGTGTTG 57.987 47.619 0.00 0.00 30.64 3.33
6656 7897 3.728076 TTCAGAGCGTGTCTTAGTGTT 57.272 42.857 0.00 0.00 30.64 3.32
6657 7898 3.181479 TGTTTCAGAGCGTGTCTTAGTGT 60.181 43.478 0.00 0.00 30.64 3.55
6658 7899 3.381045 TGTTTCAGAGCGTGTCTTAGTG 58.619 45.455 0.00 0.00 30.64 2.74
6659 7900 3.728076 TGTTTCAGAGCGTGTCTTAGT 57.272 42.857 0.00 0.00 30.64 2.24
6661 7902 3.558418 GGTTTGTTTCAGAGCGTGTCTTA 59.442 43.478 0.00 0.00 30.64 2.10
6662 7903 2.354821 GGTTTGTTTCAGAGCGTGTCTT 59.645 45.455 0.00 0.00 30.64 3.01
6663 7904 1.940613 GGTTTGTTTCAGAGCGTGTCT 59.059 47.619 0.00 0.00 35.00 3.41
6664 7905 1.668751 TGGTTTGTTTCAGAGCGTGTC 59.331 47.619 0.00 0.00 0.00 3.67
6665 7906 1.745232 TGGTTTGTTTCAGAGCGTGT 58.255 45.000 0.00 0.00 0.00 4.49
6666 7907 2.354510 TCTTGGTTTGTTTCAGAGCGTG 59.645 45.455 0.00 0.00 0.00 5.34
6667 7908 2.639065 TCTTGGTTTGTTTCAGAGCGT 58.361 42.857 0.00 0.00 0.00 5.07
6668 7909 3.548818 CCTTCTTGGTTTGTTTCAGAGCG 60.549 47.826 0.00 0.00 0.00 5.03
6669 7910 3.632145 TCCTTCTTGGTTTGTTTCAGAGC 59.368 43.478 0.00 0.00 37.07 4.09
6670 7911 5.734503 GCTTCCTTCTTGGTTTGTTTCAGAG 60.735 44.000 0.00 0.00 37.07 3.35
6671 7912 4.097892 GCTTCCTTCTTGGTTTGTTTCAGA 59.902 41.667 0.00 0.00 37.07 3.27
6672 7913 4.363138 GCTTCCTTCTTGGTTTGTTTCAG 58.637 43.478 0.00 0.00 37.07 3.02
6673 7914 3.132111 GGCTTCCTTCTTGGTTTGTTTCA 59.868 43.478 0.00 0.00 37.07 2.69
6674 7915 3.717707 GGCTTCCTTCTTGGTTTGTTTC 58.282 45.455 0.00 0.00 37.07 2.78
6676 7917 1.681264 CGGCTTCCTTCTTGGTTTGTT 59.319 47.619 0.00 0.00 37.07 2.83
6677 7918 1.318576 CGGCTTCCTTCTTGGTTTGT 58.681 50.000 0.00 0.00 37.07 2.83
6678 7919 1.318576 ACGGCTTCCTTCTTGGTTTG 58.681 50.000 0.00 0.00 37.07 2.93
6681 7922 0.602905 CGAACGGCTTCCTTCTTGGT 60.603 55.000 0.00 0.00 37.07 3.67
6682 7923 0.320421 TCGAACGGCTTCCTTCTTGG 60.320 55.000 0.00 0.00 37.10 3.61
6684 7925 1.275291 TCATCGAACGGCTTCCTTCTT 59.725 47.619 0.00 0.00 0.00 2.52
6685 7926 0.895530 TCATCGAACGGCTTCCTTCT 59.104 50.000 0.00 0.00 0.00 2.85
6686 7927 1.722011 TTCATCGAACGGCTTCCTTC 58.278 50.000 0.00 0.00 0.00 3.46
6687 7928 1.804748 GTTTCATCGAACGGCTTCCTT 59.195 47.619 0.00 0.00 0.00 3.36
6688 7929 1.002087 AGTTTCATCGAACGGCTTCCT 59.998 47.619 0.00 0.00 34.74 3.36
6689 7930 1.439679 AGTTTCATCGAACGGCTTCC 58.560 50.000 0.00 0.00 34.74 3.46
6690 7931 3.508762 TCTAGTTTCATCGAACGGCTTC 58.491 45.455 0.00 0.00 34.74 3.86
6691 7932 3.587797 TCTAGTTTCATCGAACGGCTT 57.412 42.857 0.00 0.00 34.74 4.35
6693 7934 4.657075 TTTTCTAGTTTCATCGAACGGC 57.343 40.909 0.00 0.00 34.74 5.68
6714 7955 7.093509 ACCCTGTGAAAACTGTGAGTAATTTTT 60.094 33.333 0.00 0.00 0.00 1.94
6715 7956 6.379988 ACCCTGTGAAAACTGTGAGTAATTTT 59.620 34.615 0.00 0.00 0.00 1.82
6716 7957 5.891551 ACCCTGTGAAAACTGTGAGTAATTT 59.108 36.000 0.00 0.00 0.00 1.82
6717 7958 5.445964 ACCCTGTGAAAACTGTGAGTAATT 58.554 37.500 0.00 0.00 0.00 1.40
6725 7966 1.222567 AGGGACCCTGTGAAAACTGT 58.777 50.000 13.95 0.00 29.57 3.55
6733 7974 1.004394 GGAGGTAAAAGGGACCCTGTG 59.996 57.143 15.76 0.00 37.73 3.66
6737 7978 1.968278 AGAGGAGGTAAAAGGGACCC 58.032 55.000 0.59 0.59 37.73 4.46
6738 7979 3.687125 CAAAGAGGAGGTAAAAGGGACC 58.313 50.000 0.00 0.00 37.22 4.46
6739 7980 3.082548 GCAAAGAGGAGGTAAAAGGGAC 58.917 50.000 0.00 0.00 0.00 4.46
6740 7981 2.714250 TGCAAAGAGGAGGTAAAAGGGA 59.286 45.455 0.00 0.00 0.00 4.20
6741 7982 3.154827 TGCAAAGAGGAGGTAAAAGGG 57.845 47.619 0.00 0.00 0.00 3.95
6749 7990 4.952071 TCTCTCATATGCAAAGAGGAGG 57.048 45.455 16.05 5.33 37.67 4.30
6774 8015 9.026121 TCAAAGGCTAGGATCTATTACATACTC 57.974 37.037 0.00 0.00 0.00 2.59
6786 8027 8.831550 CACTTAGTAAAATCAAAGGCTAGGATC 58.168 37.037 1.81 0.00 0.00 3.36
6787 8028 7.775561 CCACTTAGTAAAATCAAAGGCTAGGAT 59.224 37.037 0.00 0.00 0.00 3.24
6789 8030 6.884836 ACCACTTAGTAAAATCAAAGGCTAGG 59.115 38.462 0.00 0.00 0.00 3.02
6790 8031 7.148239 CCACCACTTAGTAAAATCAAAGGCTAG 60.148 40.741 0.00 0.00 0.00 3.42
6791 8032 6.657541 CCACCACTTAGTAAAATCAAAGGCTA 59.342 38.462 0.00 0.00 0.00 3.93
6792 8033 5.476945 CCACCACTTAGTAAAATCAAAGGCT 59.523 40.000 0.00 0.00 0.00 4.58
6794 8035 5.773176 ACCCACCACTTAGTAAAATCAAAGG 59.227 40.000 0.00 0.00 0.00 3.11
6795 8036 6.715264 AGACCCACCACTTAGTAAAATCAAAG 59.285 38.462 0.00 0.00 0.00 2.77
6796 8037 6.607019 AGACCCACCACTTAGTAAAATCAAA 58.393 36.000 0.00 0.00 0.00 2.69
6797 8038 6.195600 AGACCCACCACTTAGTAAAATCAA 57.804 37.500 0.00 0.00 0.00 2.57
6798 8039 5.836024 AGACCCACCACTTAGTAAAATCA 57.164 39.130 0.00 0.00 0.00 2.57
6799 8040 7.392418 ACTTAGACCCACCACTTAGTAAAATC 58.608 38.462 0.00 0.00 0.00 2.17
6800 8041 7.325725 ACTTAGACCCACCACTTAGTAAAAT 57.674 36.000 0.00 0.00 0.00 1.82
6801 8042 6.517194 CGACTTAGACCCACCACTTAGTAAAA 60.517 42.308 0.00 0.00 0.00 1.52
6802 8043 5.047802 CGACTTAGACCCACCACTTAGTAAA 60.048 44.000 0.00 0.00 0.00 2.01
6804 8045 4.012374 CGACTTAGACCCACCACTTAGTA 58.988 47.826 0.00 0.00 0.00 1.82
6805 8046 2.824341 CGACTTAGACCCACCACTTAGT 59.176 50.000 0.00 0.00 0.00 2.24
6806 8047 2.824341 ACGACTTAGACCCACCACTTAG 59.176 50.000 0.00 0.00 0.00 2.18
6821 8062 5.525012 GGAGGTAACAAAGTAACAACGACTT 59.475 40.000 0.00 0.00 38.81 3.01
6822 8063 5.052481 GGAGGTAACAAAGTAACAACGACT 58.948 41.667 0.00 0.00 41.41 4.18
6825 8066 4.379374 CGGAGGTAACAAAGTAACAACG 57.621 45.455 0.00 0.00 41.41 4.10
6842 8083 5.642491 CCTACCTCTTCTTTTTAAACCGGAG 59.358 44.000 9.46 0.00 0.00 4.63
6846 8087 5.944599 CCCTCCTACCTCTTCTTTTTAAACC 59.055 44.000 0.00 0.00 0.00 3.27
6849 8090 4.018688 GCCCCTCCTACCTCTTCTTTTTAA 60.019 45.833 0.00 0.00 0.00 1.52
6851 8092 2.309162 GCCCCTCCTACCTCTTCTTTTT 59.691 50.000 0.00 0.00 0.00 1.94
6862 8103 2.241430 AGTTTAACATGGCCCCTCCTAC 59.759 50.000 0.00 0.00 35.26 3.18
6871 8112 6.884280 ATATAGGAGCAAGTTTAACATGGC 57.116 37.500 2.54 0.58 0.00 4.40
6902 8143 9.499585 CACTGCTTAATAAAATCAACATCTCAG 57.500 33.333 0.00 0.00 0.00 3.35
6903 8144 8.461222 CCACTGCTTAATAAAATCAACATCTCA 58.539 33.333 0.00 0.00 0.00 3.27
6940 8181 7.685481 TCACATGGAAGTTAAGATGGTAAGAA 58.315 34.615 0.00 0.00 0.00 2.52
6948 8193 8.924511 TCTTCTTTTCACATGGAAGTTAAGAT 57.075 30.769 0.00 0.00 36.72 2.40
6955 8200 8.783833 TCTTATCTCTTCTTTTCACATGGAAG 57.216 34.615 0.00 0.00 36.72 3.46
6958 8203 8.663911 GTTCTCTTATCTCTTCTTTTCACATGG 58.336 37.037 0.00 0.00 0.00 3.66
6959 8204 8.663911 GGTTCTCTTATCTCTTCTTTTCACATG 58.336 37.037 0.00 0.00 0.00 3.21
6960 8205 8.378565 TGGTTCTCTTATCTCTTCTTTTCACAT 58.621 33.333 0.00 0.00 0.00 3.21
6977 8222 6.321181 TGAGCAATTTTAACAGTGGTTCTCTT 59.679 34.615 0.00 0.00 38.45 2.85
6982 8227 7.821846 TCTTTTTGAGCAATTTTAACAGTGGTT 59.178 29.630 0.00 0.00 41.06 3.67
6984 8229 7.706179 TCTCTTTTTGAGCAATTTTAACAGTGG 59.294 33.333 0.00 0.00 42.38 4.00
6986 8231 8.470002 AGTCTCTTTTTGAGCAATTTTAACAGT 58.530 29.630 0.00 0.00 42.38 3.55
6987 8232 8.749499 CAGTCTCTTTTTGAGCAATTTTAACAG 58.251 33.333 0.00 0.00 42.38 3.16
6988 8233 7.706179 CCAGTCTCTTTTTGAGCAATTTTAACA 59.294 33.333 0.00 0.00 42.38 2.41
6989 8234 7.920682 TCCAGTCTCTTTTTGAGCAATTTTAAC 59.079 33.333 0.00 0.00 42.38 2.01
6990 8235 8.006298 TCCAGTCTCTTTTTGAGCAATTTTAA 57.994 30.769 0.00 0.00 42.38 1.52
6991 8236 7.581213 TCCAGTCTCTTTTTGAGCAATTTTA 57.419 32.000 0.00 0.00 42.38 1.52
6992 8237 6.469782 TCCAGTCTCTTTTTGAGCAATTTT 57.530 33.333 0.00 0.00 42.38 1.82
6993 8238 6.469782 TTCCAGTCTCTTTTTGAGCAATTT 57.530 33.333 0.00 0.00 42.38 1.82
6994 8239 6.127366 TGTTTCCAGTCTCTTTTTGAGCAATT 60.127 34.615 0.00 0.00 42.38 2.32
6995 8240 5.360714 TGTTTCCAGTCTCTTTTTGAGCAAT 59.639 36.000 0.00 0.00 42.38 3.56
7030 8275 9.696917 GATCATGACAAATGGTTTCTAGTTTTT 57.303 29.630 0.00 0.00 0.00 1.94
7031 8276 8.023128 CGATCATGACAAATGGTTTCTAGTTTT 58.977 33.333 0.00 0.00 0.00 2.43
7072 8383 0.747283 CAGGTGAGGAAGCCTGCATC 60.747 60.000 0.00 0.00 44.65 3.91
7181 9260 7.618117 TGTCTTGGTATAATAGTTCACAGAGGA 59.382 37.037 0.00 0.00 0.00 3.71
7198 9277 9.475620 TCTCTAGTGATCTAAAATGTCTTGGTA 57.524 33.333 0.00 0.00 0.00 3.25
7201 9280 9.258826 CCATCTCTAGTGATCTAAAATGTCTTG 57.741 37.037 4.30 0.00 0.00 3.02
7204 9283 9.685828 GTACCATCTCTAGTGATCTAAAATGTC 57.314 37.037 4.30 0.00 0.00 3.06
7205 9284 9.427821 AGTACCATCTCTAGTGATCTAAAATGT 57.572 33.333 4.30 0.00 0.00 2.71
7209 9288 8.725256 AGGTAGTACCATCTCTAGTGATCTAAA 58.275 37.037 21.49 0.00 41.95 1.85
7212 9291 6.773583 AGGTAGTACCATCTCTAGTGATCT 57.226 41.667 21.49 2.40 41.95 2.75
7213 9292 7.826918 AAAGGTAGTACCATCTCTAGTGATC 57.173 40.000 21.49 0.00 41.95 2.92
7214 9293 8.611051 AAAAAGGTAGTACCATCTCTAGTGAT 57.389 34.615 21.49 1.36 41.95 3.06
7269 9348 9.309516 TCGATCGCTCAGTTATTTATTAAAAGT 57.690 29.630 11.09 0.00 0.00 2.66
7270 9349 9.784824 CTCGATCGCTCAGTTATTTATTAAAAG 57.215 33.333 11.09 0.00 0.00 2.27
7271 9350 8.761497 CCTCGATCGCTCAGTTATTTATTAAAA 58.239 33.333 11.09 0.00 0.00 1.52
7278 9429 2.224066 CCCCTCGATCGCTCAGTTATTT 60.224 50.000 11.09 0.00 0.00 1.40
7294 9445 1.546998 CCCCACAACAAGTTACCCCTC 60.547 57.143 0.00 0.00 0.00 4.30
7313 9464 2.849880 ATTATGCACGCACATCAACC 57.150 45.000 0.00 0.00 0.00 3.77
7395 9549 2.045045 CCCCGTGGTCATGCACAT 60.045 61.111 0.00 0.00 0.00 3.21
7424 9578 2.421670 CCGGTAGAAGCAGGAGTAGAGA 60.422 54.545 0.00 0.00 0.00 3.10
7463 9617 3.471244 CTTCTCCGCGAGCCCGTAG 62.471 68.421 8.23 0.00 38.24 3.51
7537 9691 1.077089 GTTCTTGAGCTCGCGGTACC 61.077 60.000 6.13 0.16 0.00 3.34
7562 9716 2.662866 CATCCCAAGTGCATCTGGAAT 58.337 47.619 16.51 1.09 0.00 3.01
7597 9751 1.539869 ATCCCCATCCCCATCCTCG 60.540 63.158 0.00 0.00 0.00 4.63
7631 9785 4.157120 GTCATCCCGGGGTCCACG 62.157 72.222 23.50 6.53 0.00 4.94
7728 9882 7.074653 AGCTTATCGTATATCTTTTTGGGGA 57.925 36.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.