Multiple sequence alignment - TraesCS2A01G016000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G016000 chr2A 100.000 3239 0 0 1 3239 7327301 7330539 0.000000e+00 5982.0
1 TraesCS2A01G016000 chr2A 97.573 206 5 0 2732 2937 7360715 7360920 1.430000e-93 353.0
2 TraesCS2A01G016000 chr2A 86.286 175 13 6 629 800 7378635 7378801 2.570000e-41 180.0
3 TraesCS2A01G016000 chr2A 91.111 90 5 2 163 250 277141734 277141822 5.680000e-23 119.0
4 TraesCS2A01G016000 chr2A 92.308 78 6 0 163 240 277141465 277141542 9.500000e-21 111.0
5 TraesCS2A01G016000 chr2D 89.889 722 36 12 1683 2376 8327366 8328078 0.000000e+00 894.0
6 TraesCS2A01G016000 chr2D 92.667 300 16 3 2421 2719 8328233 8328527 8.300000e-116 427.0
7 TraesCS2A01G016000 chr2D 79.894 567 44 25 570 1114 8326593 8327111 5.140000e-93 351.0
8 TraesCS2A01G016000 chr2D 79.560 318 43 7 73 368 8325532 8325849 1.180000e-49 207.0
9 TraesCS2A01G016000 chr2D 92.000 100 8 0 451 550 8336687 8336786 1.210000e-29 141.0
10 TraesCS2A01G016000 chr2D 93.103 87 6 0 1798 1884 8302113 8302199 9.430000e-26 128.0
11 TraesCS2A01G016000 chr2D 92.308 78 6 0 163 240 206238599 206238522 9.500000e-21 111.0
12 TraesCS2A01G016000 chr2B 83.903 907 85 31 250 1115 4719860 4720746 0.000000e+00 809.0
13 TraesCS2A01G016000 chr2B 86.880 686 47 20 1717 2378 4721063 4721729 0.000000e+00 728.0
14 TraesCS2A01G016000 chr2B 81.100 291 20 15 537 800 4726520 4726802 1.970000e-47 200.0
15 TraesCS2A01G016000 chr6A 93.928 527 15 3 2730 3239 42329020 42328494 0.000000e+00 780.0
16 TraesCS2A01G016000 chr6A 93.928 527 15 3 2730 3239 42529332 42528806 0.000000e+00 780.0
17 TraesCS2A01G016000 chr6A 93.738 527 16 3 2730 3239 42551669 42551143 0.000000e+00 774.0
18 TraesCS2A01G016000 chr6A 93.714 525 15 6 2732 3239 42580936 42580413 0.000000e+00 771.0
19 TraesCS2A01G016000 chr6A 93.714 525 15 6 2732 3239 42616586 42616063 0.000000e+00 771.0
20 TraesCS2A01G016000 chr6A 93.548 527 17 3 2730 3239 42506922 42506396 0.000000e+00 769.0
21 TraesCS2A01G016000 chr6A 93.524 525 16 6 2732 3239 42361943 42361420 0.000000e+00 765.0
22 TraesCS2A01G016000 chr6A 87.764 237 8 3 2732 2947 42324070 42323834 1.150000e-64 257.0
23 TraesCS2A01G016000 chr6A 87.712 236 8 3 2732 2946 42546719 42546484 4.150000e-64 255.0
24 TraesCS2A01G016000 chr6A 88.136 59 7 0 95 153 23252660 23252602 1.610000e-08 71.3
25 TraesCS2A01G016000 chr7A 93.762 529 13 2 2731 3239 36451857 36452385 0.000000e+00 776.0
26 TraesCS2A01G016000 chr7A 87.168 226 9 2 2732 2937 36456812 36457037 4.180000e-59 239.0
27 TraesCS2A01G016000 chr7A 80.000 165 18 8 1 153 120138096 120137935 1.230000e-19 108.0
28 TraesCS2A01G016000 chr7A 85.000 100 15 0 289 388 120137943 120137844 5.720000e-18 102.0
29 TraesCS2A01G016000 chrUn 93.714 525 15 6 2732 3239 331977566 331977043 0.000000e+00 771.0
30 TraesCS2A01G016000 chrUn 100.000 220 0 0 1 220 303019578 303019797 1.080000e-109 407.0
31 TraesCS2A01G016000 chrUn 93.103 87 6 0 1798 1884 170193049 170193135 9.430000e-26 128.0
32 TraesCS2A01G016000 chrUn 90.909 88 8 0 163 250 17536321 17536234 5.680000e-23 119.0
33 TraesCS2A01G016000 chr5A 95.377 411 15 4 1115 1522 312273927 312274336 0.000000e+00 651.0
34 TraesCS2A01G016000 chr5A 93.447 412 23 3 1115 1522 650289473 650289062 2.760000e-170 608.0
35 TraesCS2A01G016000 chr5A 94.118 85 5 0 1799 1883 613008015 613008099 2.620000e-26 130.0
36 TraesCS2A01G016000 chr5A 89.286 84 9 0 167 250 305089799 305089882 4.420000e-19 106.0
37 TraesCS2A01G016000 chr1D 93.166 439 23 7 1111 1544 267592301 267592737 3.520000e-179 638.0
38 TraesCS2A01G016000 chr1D 95.000 40 0 2 389 427 466124372 466124334 9.700000e-06 62.1
39 TraesCS2A01G016000 chr6B 94.062 421 20 5 1109 1526 26784062 26784480 4.560000e-178 634.0
40 TraesCS2A01G016000 chr4A 94.789 403 19 2 1115 1516 609085455 609085856 7.630000e-176 627.0
41 TraesCS2A01G016000 chr4A 87.273 55 6 1 98 152 427990191 427990138 9.700000e-06 62.1
42 TraesCS2A01G016000 chr7D 93.720 414 20 5 1114 1522 52945191 52944779 1.650000e-172 616.0
43 TraesCS2A01G016000 chr7D 80.000 100 20 0 289 388 115212683 115212584 1.250000e-09 75.0
44 TraesCS2A01G016000 chr3A 93.917 411 17 7 1115 1522 696065232 696064827 5.940000e-172 614.0
45 TraesCS2A01G016000 chr1A 93.462 413 21 5 1115 1522 512457031 512456620 2.760000e-170 608.0
46 TraesCS2A01G016000 chr1A 93.187 411 24 4 1115 1522 104434014 104433605 4.620000e-168 601.0
47 TraesCS2A01G016000 chr5D 94.118 85 5 0 1799 1883 490870143 490870227 2.620000e-26 130.0
48 TraesCS2A01G016000 chr5D 89.286 84 9 0 167 250 222427230 222427147 4.420000e-19 106.0
49 TraesCS2A01G016000 chr5B 94.118 85 5 0 1799 1883 605336219 605336303 2.620000e-26 130.0
50 TraesCS2A01G016000 chr5B 89.655 87 7 2 164 249 487481173 487481088 3.420000e-20 110.0
51 TraesCS2A01G016000 chr3B 87.640 89 10 1 163 250 16330508 16330420 5.720000e-18 102.0
52 TraesCS2A01G016000 chr7B 80.000 100 20 0 289 388 74823472 74823373 1.250000e-09 75.0
53 TraesCS2A01G016000 chr7B 79.000 100 21 0 289 388 74827328 74827229 5.800000e-08 69.4
54 TraesCS2A01G016000 chr6D 94.872 39 2 0 389 427 751471 751509 9.700000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G016000 chr2A 7327301 7330539 3238 False 5982.00 5982 100.0000 1 3239 1 chr2A.!!$F1 3238
1 TraesCS2A01G016000 chr2D 8325532 8328527 2995 False 469.75 894 85.5025 73 2719 4 chr2D.!!$F3 2646
2 TraesCS2A01G016000 chr2B 4719860 4721729 1869 False 768.50 809 85.3915 250 2378 2 chr2B.!!$F2 2128
3 TraesCS2A01G016000 chr6A 42328494 42329020 526 True 780.00 780 93.9280 2730 3239 1 chr6A.!!$R3 509
4 TraesCS2A01G016000 chr6A 42528806 42529332 526 True 780.00 780 93.9280 2730 3239 1 chr6A.!!$R6 509
5 TraesCS2A01G016000 chr6A 42551143 42551669 526 True 774.00 774 93.7380 2730 3239 1 chr6A.!!$R8 509
6 TraesCS2A01G016000 chr6A 42580413 42580936 523 True 771.00 771 93.7140 2732 3239 1 chr6A.!!$R9 507
7 TraesCS2A01G016000 chr6A 42616063 42616586 523 True 771.00 771 93.7140 2732 3239 1 chr6A.!!$R10 507
8 TraesCS2A01G016000 chr6A 42506396 42506922 526 True 769.00 769 93.5480 2730 3239 1 chr6A.!!$R5 509
9 TraesCS2A01G016000 chr6A 42361420 42361943 523 True 765.00 765 93.5240 2732 3239 1 chr6A.!!$R4 507
10 TraesCS2A01G016000 chr7A 36451857 36452385 528 False 776.00 776 93.7620 2731 3239 1 chr7A.!!$F1 508
11 TraesCS2A01G016000 chrUn 331977043 331977566 523 True 771.00 771 93.7140 2732 3239 1 chrUn.!!$R2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.033228 TGGCTCAATGGTTTTTGCCG 59.967 50.0 0.00 0.00 42.87 5.69 F
880 1472 0.179174 GCTCCGGCCGTTGTTAAATG 60.179 55.0 26.12 5.01 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1714 0.100325 TGCAGCCACTTTTCGTGTTG 59.900 50.0 0.00 0.0 42.20 3.33 R
2594 3513 0.187361 TGGGTCCCAAAACTTCCCTG 59.813 55.0 8.65 0.0 38.95 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.760385 GGAGGGGAGTGACGGAGG 60.760 72.222 0.00 0.00 0.00 4.30
18 19 2.760385 GAGGGGAGTGACGGAGGG 60.760 72.222 0.00 0.00 0.00 4.30
19 20 3.273654 AGGGGAGTGACGGAGGGA 61.274 66.667 0.00 0.00 0.00 4.20
20 21 2.760385 GGGGAGTGACGGAGGGAG 60.760 72.222 0.00 0.00 0.00 4.30
21 22 3.462678 GGGAGTGACGGAGGGAGC 61.463 72.222 0.00 0.00 0.00 4.70
22 23 3.827898 GGAGTGACGGAGGGAGCG 61.828 72.222 0.00 0.00 0.00 5.03
23 24 4.500116 GAGTGACGGAGGGAGCGC 62.500 72.222 0.00 0.00 0.00 5.92
25 26 4.500116 GTGACGGAGGGAGCGCTC 62.500 72.222 29.38 29.38 0.00 5.03
30 31 4.083862 GGAGGGAGCGCTCGGTTT 62.084 66.667 29.81 15.42 0.00 3.27
31 32 2.815647 GAGGGAGCGCTCGGTTTG 60.816 66.667 29.81 0.00 0.00 2.93
32 33 4.394712 AGGGAGCGCTCGGTTTGG 62.395 66.667 29.81 0.00 0.00 3.28
38 39 3.423154 CGCTCGGTTTGGGCTGAC 61.423 66.667 0.00 0.00 0.00 3.51
39 40 3.056328 GCTCGGTTTGGGCTGACC 61.056 66.667 0.00 0.00 40.81 4.02
49 50 2.435059 GGCTGACCCAGTCGCTTC 60.435 66.667 9.98 0.00 34.95 3.86
50 51 2.343758 GCTGACCCAGTCGCTTCA 59.656 61.111 0.00 0.00 34.95 3.02
51 52 1.739562 GCTGACCCAGTCGCTTCAG 60.740 63.158 0.00 0.00 38.83 3.02
52 53 1.967535 CTGACCCAGTCGCTTCAGA 59.032 57.895 0.00 0.00 38.19 3.27
53 54 0.389166 CTGACCCAGTCGCTTCAGAC 60.389 60.000 0.00 0.00 38.19 3.51
54 55 1.112916 TGACCCAGTCGCTTCAGACA 61.113 55.000 0.00 0.00 43.24 3.41
55 56 0.247736 GACCCAGTCGCTTCAGACAT 59.752 55.000 0.00 0.00 43.24 3.06
56 57 1.476891 GACCCAGTCGCTTCAGACATA 59.523 52.381 0.00 0.00 43.24 2.29
57 58 1.478510 ACCCAGTCGCTTCAGACATAG 59.521 52.381 0.00 0.00 43.24 2.23
58 59 1.565305 CCAGTCGCTTCAGACATAGC 58.435 55.000 0.00 0.00 43.24 2.97
59 60 1.565305 CAGTCGCTTCAGACATAGCC 58.435 55.000 0.00 0.00 43.24 3.93
60 61 0.101399 AGTCGCTTCAGACATAGCCG 59.899 55.000 0.00 0.00 43.24 5.52
61 62 0.179134 GTCGCTTCAGACATAGCCGT 60.179 55.000 0.00 0.00 40.65 5.68
62 63 0.530744 TCGCTTCAGACATAGCCGTT 59.469 50.000 0.00 0.00 33.86 4.44
63 64 1.746787 TCGCTTCAGACATAGCCGTTA 59.253 47.619 0.00 0.00 33.86 3.18
64 65 2.164827 TCGCTTCAGACATAGCCGTTAA 59.835 45.455 0.00 0.00 33.86 2.01
65 66 3.123804 CGCTTCAGACATAGCCGTTAAT 58.876 45.455 0.00 0.00 33.86 1.40
66 67 3.060272 CGCTTCAGACATAGCCGTTAATG 60.060 47.826 0.00 0.00 33.86 1.90
67 68 3.248602 GCTTCAGACATAGCCGTTAATGG 59.751 47.826 9.55 9.55 0.00 3.16
86 87 0.673333 GCACACCATCACCGATGTCA 60.673 55.000 3.47 0.00 38.28 3.58
115 116 1.234821 GGATCAGCCACGTCAAAACA 58.765 50.000 0.00 0.00 36.34 2.83
144 145 4.834357 AAAATGGCTCAATGGTTTTTGC 57.166 36.364 0.00 0.00 0.00 3.68
146 147 0.033228 TGGCTCAATGGTTTTTGCCG 59.967 50.000 0.00 0.00 42.87 5.69
147 148 1.291184 GGCTCAATGGTTTTTGCCGC 61.291 55.000 0.00 0.00 0.00 6.53
148 149 0.319813 GCTCAATGGTTTTTGCCGCT 60.320 50.000 0.00 0.00 0.00 5.52
149 150 1.067915 GCTCAATGGTTTTTGCCGCTA 60.068 47.619 0.00 0.00 0.00 4.26
150 151 2.417243 GCTCAATGGTTTTTGCCGCTAT 60.417 45.455 0.00 0.00 0.00 2.97
151 152 3.438360 CTCAATGGTTTTTGCCGCTATC 58.562 45.455 0.00 0.00 0.00 2.08
152 153 2.822561 TCAATGGTTTTTGCCGCTATCA 59.177 40.909 0.00 0.00 0.00 2.15
154 155 4.081752 TCAATGGTTTTTGCCGCTATCAAT 60.082 37.500 0.00 0.00 0.00 2.57
155 156 3.951775 TGGTTTTTGCCGCTATCAATT 57.048 38.095 0.00 0.00 0.00 2.32
156 157 4.264460 TGGTTTTTGCCGCTATCAATTT 57.736 36.364 0.00 0.00 0.00 1.82
195 202 1.154430 TTGGTGGAAAAGCCCCTACT 58.846 50.000 0.00 0.00 34.97 2.57
213 220 8.414003 GCCCCTACTGATTTTTAATAAAGAAGG 58.586 37.037 0.00 0.00 0.00 3.46
226 233 3.990959 AAAGAAGGAGATGTGAGACCC 57.009 47.619 0.00 0.00 0.00 4.46
240 247 1.475682 GAGACCCGTGTAAGAACCGAT 59.524 52.381 0.00 0.00 0.00 4.18
243 250 1.067354 ACCCGTGTAAGAACCGATGTC 60.067 52.381 0.00 0.00 0.00 3.06
255 279 0.601576 CCGATGTCCGAACCAACACA 60.602 55.000 0.00 0.00 41.76 3.72
256 280 1.222300 CGATGTCCGAACCAACACAA 58.778 50.000 0.00 0.00 41.76 3.33
272 296 4.481368 ACACAACACTCTAACCACTGAA 57.519 40.909 0.00 0.00 0.00 3.02
292 316 2.826488 ACTAAGAGCTCATCCACCACT 58.174 47.619 17.77 0.00 0.00 4.00
321 345 1.222300 TCGGTTCGGTGTGAAATGTG 58.778 50.000 0.00 0.00 38.60 3.21
322 346 0.941542 CGGTTCGGTGTGAAATGTGT 59.058 50.000 0.00 0.00 38.60 3.72
323 347 1.333702 CGGTTCGGTGTGAAATGTGTG 60.334 52.381 0.00 0.00 38.60 3.82
327 351 3.684103 TCGGTGTGAAATGTGTGAAAC 57.316 42.857 0.00 0.00 37.35 2.78
331 355 3.105203 GTGTGAAATGTGTGAAACCGTG 58.895 45.455 0.00 0.00 34.36 4.94
345 369 1.385528 ACCGTGAAGTGGTGGTTTTC 58.614 50.000 0.00 0.00 38.60 2.29
388 511 5.301551 TGTGATGGTTCTGTGCATTTAACTT 59.698 36.000 0.00 0.00 0.00 2.66
395 518 3.193267 TCTGTGCATTTAACTTGATGCCC 59.807 43.478 7.25 0.00 46.16 5.36
406 529 1.546923 CTTGATGCCCTCACATTTGCA 59.453 47.619 0.00 0.00 38.23 4.08
433 556 3.443681 CCACCTTGCTAGTTTACCCATTG 59.556 47.826 0.00 0.00 0.00 2.82
442 565 6.014669 TGCTAGTTTACCCATTGCTTGAAAAT 60.015 34.615 0.00 0.00 0.00 1.82
443 566 7.177568 TGCTAGTTTACCCATTGCTTGAAAATA 59.822 33.333 0.00 0.00 0.00 1.40
486 610 5.279006 GCCTAGTATCGATCAATCTGAACCA 60.279 44.000 0.00 0.00 0.00 3.67
493 617 4.984785 TCGATCAATCTGAACCATCGAATC 59.015 41.667 12.83 0.00 33.12 2.52
495 619 5.107568 CGATCAATCTGAACCATCGAATCTG 60.108 44.000 8.85 0.00 29.53 2.90
532 656 1.019278 ATTTGCACACGTCCCTAGCG 61.019 55.000 0.00 0.00 0.00 4.26
543 670 1.219935 CCCTAGCGTAAAAGGCCGT 59.780 57.895 0.00 0.00 0.00 5.68
550 677 1.662026 GCGTAAAAGGCCGTGACTTTG 60.662 52.381 5.63 0.00 40.35 2.77
551 678 1.600485 CGTAAAAGGCCGTGACTTTGT 59.400 47.619 5.63 0.80 40.35 2.83
553 680 2.052782 AAAAGGCCGTGACTTTGTCT 57.947 45.000 5.63 0.00 40.35 3.41
554 681 1.308998 AAAGGCCGTGACTTTGTCTG 58.691 50.000 0.00 0.00 39.68 3.51
555 682 0.468226 AAGGCCGTGACTTTGTCTGA 59.532 50.000 0.00 0.00 33.15 3.27
556 683 0.468226 AGGCCGTGACTTTGTCTGAA 59.532 50.000 0.00 0.00 33.15 3.02
557 684 1.134220 AGGCCGTGACTTTGTCTGAAA 60.134 47.619 0.00 0.00 33.15 2.69
559 686 1.940613 GCCGTGACTTTGTCTGAAAGT 59.059 47.619 0.00 0.00 42.62 2.66
560 687 2.286418 GCCGTGACTTTGTCTGAAAGTG 60.286 50.000 4.58 0.00 40.27 3.16
561 688 3.194861 CCGTGACTTTGTCTGAAAGTGA 58.805 45.455 4.58 0.00 40.27 3.41
562 689 3.001330 CCGTGACTTTGTCTGAAAGTGAC 59.999 47.826 4.58 5.80 40.27 3.67
563 690 3.865745 CGTGACTTTGTCTGAAAGTGACT 59.134 43.478 12.82 0.00 40.56 3.41
564 691 4.026475 CGTGACTTTGTCTGAAAGTGACTC 60.026 45.833 12.82 0.00 40.56 3.36
565 692 4.271291 GTGACTTTGTCTGAAAGTGACTCC 59.729 45.833 8.94 0.00 39.92 3.85
566 693 4.081142 TGACTTTGTCTGAAAGTGACTCCA 60.081 41.667 4.58 0.00 40.27 3.86
567 694 4.192317 ACTTTGTCTGAAAGTGACTCCAC 58.808 43.478 0.00 0.00 43.50 4.02
625 1193 2.181021 CCTGTAGCGACACGTCCC 59.819 66.667 0.00 0.00 0.00 4.46
767 1345 1.077716 AGGTAAAGCCATGGCCGTC 60.078 57.895 33.14 19.65 43.17 4.79
768 1346 2.469516 GGTAAAGCCATGGCCGTCG 61.470 63.158 33.14 0.00 43.17 5.12
769 1347 2.822255 TAAAGCCATGGCCGTCGC 60.822 61.111 33.14 6.42 43.17 5.19
770 1348 3.613877 TAAAGCCATGGCCGTCGCA 62.614 57.895 33.14 9.94 43.17 5.10
782 1360 2.355837 GTCGCACGCACTCAGGAA 60.356 61.111 0.00 0.00 0.00 3.36
798 1376 1.514678 GGAACCGACAGCATGCACAA 61.515 55.000 21.98 0.00 42.53 3.33
799 1377 0.385974 GAACCGACAGCATGCACAAC 60.386 55.000 21.98 7.26 42.53 3.32
800 1378 0.819259 AACCGACAGCATGCACAACT 60.819 50.000 21.98 0.00 42.53 3.16
801 1379 1.230635 ACCGACAGCATGCACAACTC 61.231 55.000 21.98 5.32 42.53 3.01
802 1380 1.229975 CCGACAGCATGCACAACTCA 61.230 55.000 21.98 0.00 42.53 3.41
803 1381 0.800631 CGACAGCATGCACAACTCAT 59.199 50.000 21.98 0.00 42.53 2.90
880 1472 0.179174 GCTCCGGCCGTTGTTAAATG 60.179 55.000 26.12 5.01 0.00 2.32
886 1478 1.154301 CCGTTGTTAAATGCGCGCT 60.154 52.632 33.29 15.25 0.00 5.92
921 1513 2.310233 CGCTCACACAAGTCCGGTG 61.310 63.158 0.00 0.00 41.95 4.94
922 1514 1.069090 GCTCACACAAGTCCGGTGA 59.931 57.895 0.00 0.00 39.53 4.02
925 1517 1.069765 CACACAAGTCCGGTGAGCT 59.930 57.895 0.00 0.00 39.53 4.09
927 1519 2.031163 ACAAGTCCGGTGAGCTGC 59.969 61.111 0.00 0.00 0.00 5.25
928 1520 2.345244 CAAGTCCGGTGAGCTGCT 59.655 61.111 0.00 0.00 0.00 4.24
930 1522 0.886490 CAAGTCCGGTGAGCTGCTTT 60.886 55.000 2.53 0.00 0.00 3.51
931 1523 0.685097 AAGTCCGGTGAGCTGCTTTA 59.315 50.000 2.53 0.00 0.00 1.85
932 1524 0.685097 AGTCCGGTGAGCTGCTTTAA 59.315 50.000 2.53 0.00 0.00 1.52
937 1537 2.749621 CCGGTGAGCTGCTTTAATTCTT 59.250 45.455 2.53 0.00 0.00 2.52
947 1547 5.584251 GCTGCTTTAATTCTTCAGCTAGTCT 59.416 40.000 12.01 0.00 44.71 3.24
965 1565 1.618837 TCTGGCGAGCTCTTACAAACT 59.381 47.619 12.85 0.00 0.00 2.66
981 1583 4.298009 CTGCAAGTCTCCCAGCAG 57.702 61.111 0.00 0.00 46.98 4.24
1042 1646 4.742201 GCGGCTGCTTCCACGAGA 62.742 66.667 11.21 0.00 38.39 4.04
1043 1647 2.811317 CGGCTGCTTCCACGAGAC 60.811 66.667 0.00 0.00 0.00 3.36
1044 1648 2.435059 GGCTGCTTCCACGAGACC 60.435 66.667 0.00 0.00 0.00 3.85
1045 1649 2.343758 GCTGCTTCCACGAGACCA 59.656 61.111 0.00 0.00 0.00 4.02
1046 1650 2.029844 GCTGCTTCCACGAGACCAC 61.030 63.158 0.00 0.00 0.00 4.16
1047 1651 1.734477 CTGCTTCCACGAGACCACG 60.734 63.158 0.00 0.00 39.31 4.94
1052 1657 1.727511 TTCCACGAGACCACGACGTT 61.728 55.000 0.00 0.00 38.18 3.99
1100 1705 1.082206 CCCTCCCACCCTCCTGTTA 59.918 63.158 0.00 0.00 0.00 2.41
1109 1714 3.369576 CCACCCTCCTGTTAAAGTAGAGC 60.370 52.174 0.00 0.00 0.00 4.09
1115 1725 4.304110 TCCTGTTAAAGTAGAGCAACACG 58.696 43.478 0.00 0.00 0.00 4.49
1116 1726 4.038282 TCCTGTTAAAGTAGAGCAACACGA 59.962 41.667 0.00 0.00 0.00 4.35
1117 1727 4.748102 CCTGTTAAAGTAGAGCAACACGAA 59.252 41.667 0.00 0.00 0.00 3.85
1118 1728 5.235616 CCTGTTAAAGTAGAGCAACACGAAA 59.764 40.000 0.00 0.00 0.00 3.46
1120 1730 6.711579 TGTTAAAGTAGAGCAACACGAAAAG 58.288 36.000 0.00 0.00 0.00 2.27
1121 1731 6.314400 TGTTAAAGTAGAGCAACACGAAAAGT 59.686 34.615 0.00 0.00 0.00 2.66
1129 1739 4.929198 CACGAAAAGTGGCTGCAG 57.071 55.556 10.11 10.11 46.77 4.41
1130 1740 2.320215 CACGAAAAGTGGCTGCAGA 58.680 52.632 20.43 0.00 46.77 4.26
1131 1741 0.236711 CACGAAAAGTGGCTGCAGAG 59.763 55.000 20.43 0.00 46.77 3.35
1132 1742 0.886490 ACGAAAAGTGGCTGCAGAGG 60.886 55.000 20.43 0.00 0.00 3.69
1133 1743 1.583477 GAAAAGTGGCTGCAGAGGC 59.417 57.895 20.43 5.00 45.19 4.70
1141 1751 4.527583 CTGCAGAGGCCGAGCTCC 62.528 72.222 8.42 0.00 40.13 4.70
1143 1753 3.859414 GCAGAGGCCGAGCTCCAT 61.859 66.667 8.47 0.00 0.00 3.41
1144 1754 2.906458 CAGAGGCCGAGCTCCATT 59.094 61.111 8.47 0.00 0.00 3.16
1145 1755 1.523258 CAGAGGCCGAGCTCCATTG 60.523 63.158 8.47 0.00 0.00 2.82
1146 1756 1.687146 AGAGGCCGAGCTCCATTGA 60.687 57.895 8.47 0.00 0.00 2.57
1147 1757 1.227497 GAGGCCGAGCTCCATTGAG 60.227 63.158 8.47 0.00 41.84 3.02
1164 1774 9.585099 CTCCATTGAGCTCTATATACATTTCTC 57.415 37.037 16.19 0.00 0.00 2.87
1165 1775 9.093458 TCCATTGAGCTCTATATACATTTCTCA 57.907 33.333 16.19 0.00 0.00 3.27
1166 1776 9.368674 CCATTGAGCTCTATATACATTTCTCAG 57.631 37.037 16.19 0.00 31.96 3.35
1167 1777 8.871862 CATTGAGCTCTATATACATTTCTCAGC 58.128 37.037 16.19 0.00 31.96 4.26
1168 1778 6.929625 TGAGCTCTATATACATTTCTCAGCC 58.070 40.000 16.19 0.00 0.00 4.85
1169 1779 6.494835 TGAGCTCTATATACATTTCTCAGCCA 59.505 38.462 16.19 0.00 0.00 4.75
1170 1780 7.015584 TGAGCTCTATATACATTTCTCAGCCAA 59.984 37.037 16.19 0.00 0.00 4.52
1171 1781 7.739825 AGCTCTATATACATTTCTCAGCCAAA 58.260 34.615 0.00 0.00 0.00 3.28
1172 1782 8.213679 AGCTCTATATACATTTCTCAGCCAAAA 58.786 33.333 0.00 0.00 0.00 2.44
1173 1783 9.007901 GCTCTATATACATTTCTCAGCCAAAAT 57.992 33.333 0.00 0.00 0.00 1.82
1178 1788 7.961326 ATACATTTCTCAGCCAAAATACCTT 57.039 32.000 0.00 0.00 0.00 3.50
1179 1789 6.670695 ACATTTCTCAGCCAAAATACCTTT 57.329 33.333 0.00 0.00 0.00 3.11
1180 1790 7.066307 ACATTTCTCAGCCAAAATACCTTTT 57.934 32.000 0.00 0.00 34.90 2.27
1181 1791 7.508687 ACATTTCTCAGCCAAAATACCTTTTT 58.491 30.769 0.00 0.00 32.21 1.94
1182 1792 7.657354 ACATTTCTCAGCCAAAATACCTTTTTC 59.343 33.333 0.00 0.00 32.21 2.29
1183 1793 6.723298 TTCTCAGCCAAAATACCTTTTTCA 57.277 33.333 0.00 0.00 32.21 2.69
1184 1794 6.916360 TCTCAGCCAAAATACCTTTTTCAT 57.084 33.333 0.00 0.00 32.21 2.57
1185 1795 8.415950 TTCTCAGCCAAAATACCTTTTTCATA 57.584 30.769 0.00 0.00 32.21 2.15
1186 1796 8.415950 TCTCAGCCAAAATACCTTTTTCATAA 57.584 30.769 0.00 0.00 32.21 1.90
1187 1797 8.303876 TCTCAGCCAAAATACCTTTTTCATAAC 58.696 33.333 0.00 0.00 32.21 1.89
1188 1798 8.189119 TCAGCCAAAATACCTTTTTCATAACT 57.811 30.769 0.00 0.00 32.21 2.24
1189 1799 8.303876 TCAGCCAAAATACCTTTTTCATAACTC 58.696 33.333 0.00 0.00 32.21 3.01
1190 1800 8.087750 CAGCCAAAATACCTTTTTCATAACTCA 58.912 33.333 0.00 0.00 32.21 3.41
1191 1801 8.646900 AGCCAAAATACCTTTTTCATAACTCAA 58.353 29.630 0.00 0.00 32.21 3.02
1192 1802 9.267084 GCCAAAATACCTTTTTCATAACTCAAA 57.733 29.630 0.00 0.00 32.21 2.69
1242 1852 9.806203 TGTAAACATATACTTAAGTATGCGTGT 57.194 29.630 30.16 26.25 41.03 4.49
1245 1855 9.806203 AAACATATACTTAAGTATGCGTGTACA 57.194 29.630 30.16 13.68 41.03 2.90
1246 1856 9.806203 AACATATACTTAAGTATGCGTGTACAA 57.194 29.630 30.16 13.07 41.03 2.41
1247 1857 9.806203 ACATATACTTAAGTATGCGTGTACAAA 57.194 29.630 30.16 12.46 41.03 2.83
1314 1924 7.989826 AGACAAATACACAGATTGAAATAGGC 58.010 34.615 0.00 0.00 0.00 3.93
1315 1925 7.831193 AGACAAATACACAGATTGAAATAGGCT 59.169 33.333 0.00 0.00 0.00 4.58
1316 1926 8.353423 ACAAATACACAGATTGAAATAGGCTT 57.647 30.769 0.00 0.00 0.00 4.35
1317 1927 8.806146 ACAAATACACAGATTGAAATAGGCTTT 58.194 29.630 0.00 0.00 0.00 3.51
1318 1928 9.643693 CAAATACACAGATTGAAATAGGCTTTT 57.356 29.630 0.00 0.00 0.00 2.27
1320 1930 9.860898 AATACACAGATTGAAATAGGCTTTTTC 57.139 29.630 19.53 19.53 34.40 2.29
1321 1931 7.530426 ACACAGATTGAAATAGGCTTTTTCT 57.470 32.000 24.32 10.70 34.80 2.52
1322 1932 7.955918 ACACAGATTGAAATAGGCTTTTTCTT 58.044 30.769 24.32 15.28 34.80 2.52
1323 1933 8.424133 ACACAGATTGAAATAGGCTTTTTCTTT 58.576 29.630 24.32 15.00 34.80 2.52
1324 1934 8.706035 CACAGATTGAAATAGGCTTTTTCTTTG 58.294 33.333 24.32 19.03 34.80 2.77
1325 1935 8.424133 ACAGATTGAAATAGGCTTTTTCTTTGT 58.576 29.630 24.32 19.47 34.80 2.83
1326 1936 9.264719 CAGATTGAAATAGGCTTTTTCTTTGTT 57.735 29.630 24.32 9.89 34.80 2.83
1327 1937 9.264719 AGATTGAAATAGGCTTTTTCTTTGTTG 57.735 29.630 24.32 0.00 34.80 3.33
1328 1938 8.962884 ATTGAAATAGGCTTTTTCTTTGTTGT 57.037 26.923 24.32 6.50 34.80 3.32
1334 1944 9.830975 AATAGGCTTTTTCTTTGTTGTATTTGT 57.169 25.926 0.00 0.00 0.00 2.83
1335 1945 7.538303 AGGCTTTTTCTTTGTTGTATTTGTG 57.462 32.000 0.00 0.00 0.00 3.33
1336 1946 7.102993 AGGCTTTTTCTTTGTTGTATTTGTGT 58.897 30.769 0.00 0.00 0.00 3.72
1337 1947 7.606073 AGGCTTTTTCTTTGTTGTATTTGTGTT 59.394 29.630 0.00 0.00 0.00 3.32
1338 1948 8.874816 GGCTTTTTCTTTGTTGTATTTGTGTTA 58.125 29.630 0.00 0.00 0.00 2.41
1339 1949 9.900264 GCTTTTTCTTTGTTGTATTTGTGTTAG 57.100 29.630 0.00 0.00 0.00 2.34
1375 1985 8.599055 TTTTTGTGTAGCATGCAAATGATAAA 57.401 26.923 21.98 9.58 33.00 1.40
1376 1986 8.599055 TTTTGTGTAGCATGCAAATGATAAAA 57.401 26.923 21.98 14.15 33.00 1.52
1377 1987 8.774890 TTTGTGTAGCATGCAAATGATAAAAT 57.225 26.923 21.98 0.00 27.52 1.82
1378 1988 8.774890 TTGTGTAGCATGCAAATGATAAAATT 57.225 26.923 21.98 0.00 27.52 1.82
1379 1989 9.866798 TTGTGTAGCATGCAAATGATAAAATTA 57.133 25.926 21.98 0.00 27.52 1.40
1380 1990 9.518906 TGTGTAGCATGCAAATGATAAAATTAG 57.481 29.630 21.98 0.00 27.52 1.73
1381 1991 9.520204 GTGTAGCATGCAAATGATAAAATTAGT 57.480 29.630 21.98 0.00 27.52 2.24
1495 2105 4.497473 TTTTACAAAACGAGCTCCATGG 57.503 40.909 4.97 4.97 0.00 3.66
1496 2106 3.410631 TTACAAAACGAGCTCCATGGA 57.589 42.857 15.27 15.27 0.00 3.41
1497 2107 1.813513 ACAAAACGAGCTCCATGGAG 58.186 50.000 33.73 33.73 44.56 3.86
1505 2115 2.765807 CTCCATGGAGCCCGGTCT 60.766 66.667 28.45 0.00 35.31 3.85
1506 2116 2.285368 TCCATGGAGCCCGGTCTT 60.285 61.111 11.44 0.00 0.00 3.01
1507 2117 1.915078 CTCCATGGAGCCCGGTCTTT 61.915 60.000 28.45 0.00 35.31 2.52
1508 2118 1.750399 CCATGGAGCCCGGTCTTTG 60.750 63.158 5.56 0.00 0.00 2.77
1509 2119 2.044946 ATGGAGCCCGGTCTTTGC 60.045 61.111 0.00 0.00 0.00 3.68
1510 2120 2.905996 ATGGAGCCCGGTCTTTGCA 61.906 57.895 0.00 0.00 0.00 4.08
1511 2121 2.282180 GGAGCCCGGTCTTTGCAA 60.282 61.111 0.00 0.00 0.00 4.08
1512 2122 2.626780 GGAGCCCGGTCTTTGCAAC 61.627 63.158 0.00 0.00 0.00 4.17
1513 2123 2.966309 GAGCCCGGTCTTTGCAACG 61.966 63.158 0.00 0.00 0.00 4.10
1514 2124 4.700365 GCCCGGTCTTTGCAACGC 62.700 66.667 0.00 0.00 0.00 4.84
1515 2125 4.038080 CCCGGTCTTTGCAACGCC 62.038 66.667 0.00 2.40 0.00 5.68
1516 2126 4.383602 CCGGTCTTTGCAACGCCG 62.384 66.667 22.67 22.67 41.82 6.46
1518 2128 3.959975 GGTCTTTGCAACGCCGCA 61.960 61.111 0.00 0.00 41.03 5.69
1519 2129 2.725815 GTCTTTGCAACGCCGCAC 60.726 61.111 0.00 0.00 42.87 5.34
1520 2130 2.899838 TCTTTGCAACGCCGCACT 60.900 55.556 0.00 0.00 42.87 4.40
1521 2131 2.427410 CTTTGCAACGCCGCACTC 60.427 61.111 0.00 0.00 42.87 3.51
1522 2132 2.896801 CTTTGCAACGCCGCACTCT 61.897 57.895 0.00 0.00 42.87 3.24
1523 2133 1.565156 CTTTGCAACGCCGCACTCTA 61.565 55.000 0.00 0.00 42.87 2.43
1524 2134 1.565156 TTTGCAACGCCGCACTCTAG 61.565 55.000 0.00 0.00 42.87 2.43
1525 2135 2.126071 GCAACGCCGCACTCTAGA 60.126 61.111 0.00 0.00 0.00 2.43
1526 2136 2.161486 GCAACGCCGCACTCTAGAG 61.161 63.158 18.49 18.49 0.00 2.43
1527 2137 2.161486 CAACGCCGCACTCTAGAGC 61.161 63.158 19.97 6.79 0.00 4.09
1528 2138 2.636412 AACGCCGCACTCTAGAGCA 61.636 57.895 19.97 0.00 0.00 4.26
1529 2139 2.154798 AACGCCGCACTCTAGAGCAA 62.155 55.000 19.97 0.00 0.00 3.91
1530 2140 2.161486 CGCCGCACTCTAGAGCAAC 61.161 63.158 19.97 8.30 0.00 4.17
1531 2141 1.079819 GCCGCACTCTAGAGCAACA 60.080 57.895 19.97 0.00 0.00 3.33
1532 2142 1.355066 GCCGCACTCTAGAGCAACAC 61.355 60.000 19.97 3.40 0.00 3.32
1533 2143 0.737715 CCGCACTCTAGAGCAACACC 60.738 60.000 19.97 1.35 0.00 4.16
1534 2144 1.073216 CGCACTCTAGAGCAACACCG 61.073 60.000 19.97 9.30 0.00 4.94
1535 2145 1.355066 GCACTCTAGAGCAACACCGC 61.355 60.000 19.97 7.36 0.00 5.68
1539 2149 3.315470 CACTCTAGAGCAACACCGCTATA 59.685 47.826 19.97 0.00 44.01 1.31
1565 2175 1.805869 GTGATGAGCAGCACAGAGTT 58.194 50.000 13.40 0.00 46.12 3.01
1591 2203 3.374220 TCTACCACACACGTTGGTTAG 57.626 47.619 15.24 10.57 37.16 2.34
1594 2206 2.011222 ACCACACACGTTGGTTAGTTG 58.989 47.619 4.53 0.00 30.72 3.16
1596 2208 1.018910 ACACACGTTGGTTAGTTGCC 58.981 50.000 0.00 0.00 0.00 4.52
1617 2229 2.946990 CCGGCGGTAAATTTGGTTATCT 59.053 45.455 19.97 0.00 0.00 1.98
1658 2286 0.325602 TGCTACCCCACGGTAAAAGG 59.674 55.000 0.00 0.00 44.26 3.11
1661 2289 1.208776 CTACCCCACGGTAAAAGGAGG 59.791 57.143 0.00 0.00 44.26 4.30
1671 2299 2.614779 GTAAAAGGAGGTACCGAGCAC 58.385 52.381 6.18 0.00 44.74 4.40
1672 2300 0.323957 AAAAGGAGGTACCGAGCACC 59.676 55.000 6.18 6.63 44.74 5.01
1707 2341 3.664014 GCAAATTTTGAATTTGGACGCCG 60.664 43.478 21.10 0.00 38.91 6.46
1741 2494 9.909644 ATAGTAGTTAAAATACCGTAGCATCAG 57.090 33.333 0.00 0.00 0.00 2.90
1742 2495 5.986004 AGTTAAAATACCGTAGCATCAGC 57.014 39.130 0.00 0.00 42.56 4.26
1761 2514 7.821359 GCATCAGCCTCTCATAATGTAAGATAA 59.179 37.037 0.00 0.00 33.58 1.75
1762 2515 9.149225 CATCAGCCTCTCATAATGTAAGATAAC 57.851 37.037 0.00 0.00 0.00 1.89
1763 2516 8.484214 TCAGCCTCTCATAATGTAAGATAACT 57.516 34.615 0.00 0.00 0.00 2.24
1793 2546 2.162208 TGGCGTAGTGGTAAGAACGTAG 59.838 50.000 0.00 0.00 37.64 3.51
1797 2550 4.094212 CGTAGTGGTAAGAACGTAGCTTC 58.906 47.826 6.84 0.00 0.00 3.86
1947 2717 6.127952 GGAGTAACTCACTACCTACTCACTTG 60.128 46.154 5.27 0.00 41.28 3.16
1983 2753 4.617875 GGGACGCTGTACATGCTT 57.382 55.556 13.14 6.04 0.00 3.91
2000 2770 2.507110 CTTCTGGCCATGACGACGGT 62.507 60.000 5.51 0.00 0.00 4.83
2002 2772 4.386951 TGGCCATGACGACGGTGG 62.387 66.667 0.00 10.66 36.09 4.61
2004 2774 3.118454 GCCATGACGACGGTGGTG 61.118 66.667 14.80 2.50 35.44 4.17
2052 2822 4.722700 GCCAAGCTGCGGGAGGAA 62.723 66.667 16.01 0.00 0.00 3.36
2148 2918 2.430921 CGCGAGCTCAAGAACCGT 60.431 61.111 15.40 0.00 0.00 4.83
2151 2921 1.006102 CGAGCTCAAGAACCGTGGT 60.006 57.895 15.40 0.00 0.00 4.16
2239 3009 0.669077 CTCCGGGATGACTCGTTAGG 59.331 60.000 0.00 0.00 38.47 2.69
2240 3010 0.033796 TCCGGGATGACTCGTTAGGT 60.034 55.000 0.00 0.00 38.47 3.08
2241 3011 0.102481 CCGGGATGACTCGTTAGGTG 59.898 60.000 0.00 0.00 38.47 4.00
2270 3040 3.407424 TGCAGTGCACACTTCTATTCT 57.593 42.857 21.04 0.00 40.20 2.40
2317 3109 6.419484 TCTAGTCTTGTTTCTTGTGATCCA 57.581 37.500 0.00 0.00 0.00 3.41
2320 3112 5.380043 AGTCTTGTTTCTTGTGATCCATGT 58.620 37.500 0.00 0.00 0.00 3.21
2321 3113 6.533730 AGTCTTGTTTCTTGTGATCCATGTA 58.466 36.000 0.00 0.00 0.00 2.29
2322 3114 6.998074 AGTCTTGTTTCTTGTGATCCATGTAA 59.002 34.615 0.00 0.00 0.00 2.41
2323 3115 7.667219 AGTCTTGTTTCTTGTGATCCATGTAAT 59.333 33.333 0.00 0.00 0.00 1.89
2365 3163 5.466393 CCCTCAAAATAAAAAGTGTGCAAGG 59.534 40.000 0.00 0.00 0.00 3.61
2378 3176 2.303175 GTGCAAGGGTGTTTTCCTGTA 58.697 47.619 0.00 0.00 34.34 2.74
2379 3177 2.691011 GTGCAAGGGTGTTTTCCTGTAA 59.309 45.455 0.00 0.00 34.34 2.41
2381 3179 2.956333 GCAAGGGTGTTTTCCTGTAACT 59.044 45.455 0.00 0.00 34.34 2.24
2382 3180 3.004419 GCAAGGGTGTTTTCCTGTAACTC 59.996 47.826 0.00 0.00 34.34 3.01
2383 3181 3.503800 AGGGTGTTTTCCTGTAACTCC 57.496 47.619 0.00 0.00 38.05 3.85
2384 3182 2.148768 GGGTGTTTTCCTGTAACTCCG 58.851 52.381 0.00 0.00 39.09 4.63
2403 3322 4.000325 TCCGGTGAAATCATGTTACTGTG 59.000 43.478 0.00 0.00 0.00 3.66
2405 3324 4.378356 CCGGTGAAATCATGTTACTGTGTG 60.378 45.833 0.00 0.00 0.00 3.82
2407 3326 4.023279 GGTGAAATCATGTTACTGTGTGCA 60.023 41.667 0.00 0.00 0.00 4.57
2408 3327 5.507149 GGTGAAATCATGTTACTGTGTGCAA 60.507 40.000 0.00 0.00 0.00 4.08
2410 3329 5.299028 TGAAATCATGTTACTGTGTGCAAGT 59.701 36.000 0.00 0.00 0.00 3.16
2411 3330 4.754372 ATCATGTTACTGTGTGCAAGTG 57.246 40.909 0.00 0.00 0.00 3.16
2412 3331 2.290367 TCATGTTACTGTGTGCAAGTGC 59.710 45.455 0.00 0.00 42.50 4.40
2413 3332 0.655208 TGTTACTGTGTGCAAGTGCG 59.345 50.000 0.00 0.00 45.83 5.34
2414 3333 0.041312 GTTACTGTGTGCAAGTGCGG 60.041 55.000 0.00 0.00 45.83 5.69
2415 3334 1.163420 TTACTGTGTGCAAGTGCGGG 61.163 55.000 0.00 0.00 45.83 6.13
2416 3335 2.034048 TACTGTGTGCAAGTGCGGGA 62.034 55.000 0.00 0.00 45.83 5.14
2417 3336 1.968017 CTGTGTGCAAGTGCGGGAT 60.968 57.895 0.00 0.00 45.83 3.85
2418 3337 2.191354 CTGTGTGCAAGTGCGGGATG 62.191 60.000 0.00 0.00 45.83 3.51
2419 3338 2.672651 TGTGCAAGTGCGGGATGG 60.673 61.111 0.00 0.00 45.83 3.51
2420 3339 3.443045 GTGCAAGTGCGGGATGGG 61.443 66.667 0.00 0.00 45.83 4.00
2421 3340 3.645660 TGCAAGTGCGGGATGGGA 61.646 61.111 0.00 0.00 45.83 4.37
2422 3341 2.361104 GCAAGTGCGGGATGGGAA 60.361 61.111 0.00 0.00 0.00 3.97
2438 3357 4.207891 TGGGAAGCTAGCTTAAGTCTTG 57.792 45.455 29.39 4.49 36.26 3.02
2476 3395 5.027737 GTGTTGTGACCGCATATTTGTATG 58.972 41.667 0.00 0.00 0.00 2.39
2497 3416 3.139077 GGACGACTTGACTTGGACATTT 58.861 45.455 0.00 0.00 0.00 2.32
2511 3430 4.016444 TGGACATTTACATGAAAGCCTCC 58.984 43.478 0.00 0.00 34.11 4.30
2538 3457 5.652014 AGGATTGAAAATTGCGGATCTTGTA 59.348 36.000 0.00 0.00 0.00 2.41
2539 3458 6.322201 AGGATTGAAAATTGCGGATCTTGTAT 59.678 34.615 0.00 0.00 0.00 2.29
2580 3499 8.613482 GCTAACTGAATAAAGACCCATTCTAAC 58.387 37.037 0.00 0.00 32.51 2.34
2584 3503 8.170730 ACTGAATAAAGACCCATTCTAACCTTT 58.829 33.333 0.00 0.00 32.51 3.11
2589 3508 7.776618 AAAGACCCATTCTAACCTTTAAAGG 57.223 36.000 29.09 29.09 42.42 3.11
2590 3509 5.262009 AGACCCATTCTAACCTTTAAAGGC 58.738 41.667 30.33 12.02 40.67 4.35
2592 3511 6.695656 AGACCCATTCTAACCTTTAAAGGCAA 60.696 38.462 30.33 18.83 40.67 4.52
2593 3512 8.133478 AGACCCATTCTAACCTTTAAAGGCAAA 61.133 37.037 30.33 19.72 40.67 3.68
2623 3542 4.074647 GGGACCCAAAGTTCCGTG 57.925 61.111 5.33 0.00 33.10 4.94
2656 3575 5.291614 CCATAGGTGCAAAAATGTATGTTGC 59.708 40.000 0.00 0.76 46.21 4.17
2679 3598 0.106469 TTGCAACAGGCCCAACAGTA 60.106 50.000 0.00 0.00 43.89 2.74
2698 3617 4.870426 CAGTATGTTCACGGTAAATCTGCT 59.130 41.667 0.00 0.00 0.00 4.24
2719 3638 2.834113 AGCCAAGTATAGTGTGGACCT 58.166 47.619 11.00 0.79 34.05 3.85
2720 3639 2.501723 AGCCAAGTATAGTGTGGACCTG 59.498 50.000 11.00 0.00 34.05 4.00
2721 3640 2.500098 GCCAAGTATAGTGTGGACCTGA 59.500 50.000 11.00 0.00 34.05 3.86
2722 3641 3.679083 GCCAAGTATAGTGTGGACCTGAC 60.679 52.174 11.00 0.00 34.05 3.51
2723 3642 3.513912 CCAAGTATAGTGTGGACCTGACA 59.486 47.826 0.00 0.00 34.05 3.58
2724 3643 4.020573 CCAAGTATAGTGTGGACCTGACAA 60.021 45.833 0.00 0.00 34.05 3.18
2725 3644 5.171476 CAAGTATAGTGTGGACCTGACAAG 58.829 45.833 0.00 0.00 0.00 3.16
2753 3672 3.252215 TGTGAATTAGTTTGGGAAGCGTG 59.748 43.478 0.00 0.00 0.00 5.34
2775 3694 4.697756 CCTTTGTCTCGGGCCGCA 62.698 66.667 23.83 11.33 0.00 5.69
2865 3784 0.688087 GGTTGGGAGGAGATCGACCT 60.688 60.000 12.96 12.96 40.80 3.85
2875 3814 4.913784 AGGAGATCGACCTATAAGGAGAC 58.086 47.826 11.74 0.00 37.67 3.36
2959 3898 3.718956 CTCCCCCTCAATCTAAACCTCAT 59.281 47.826 0.00 0.00 0.00 2.90
2961 3900 3.203040 CCCCCTCAATCTAAACCTCATGT 59.797 47.826 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.760385 CCTCCGTCACTCCCCTCC 60.760 72.222 0.00 0.00 0.00 4.30
1 2 2.760385 CCCTCCGTCACTCCCCTC 60.760 72.222 0.00 0.00 0.00 4.30
2 3 3.273654 TCCCTCCGTCACTCCCCT 61.274 66.667 0.00 0.00 0.00 4.79
3 4 2.760385 CTCCCTCCGTCACTCCCC 60.760 72.222 0.00 0.00 0.00 4.81
4 5 3.462678 GCTCCCTCCGTCACTCCC 61.463 72.222 0.00 0.00 0.00 4.30
5 6 3.827898 CGCTCCCTCCGTCACTCC 61.828 72.222 0.00 0.00 0.00 3.85
6 7 4.500116 GCGCTCCCTCCGTCACTC 62.500 72.222 0.00 0.00 0.00 3.51
8 9 4.500116 GAGCGCTCCCTCCGTCAC 62.500 72.222 27.22 0.00 0.00 3.67
13 14 4.083862 AAACCGAGCGCTCCCTCC 62.084 66.667 30.66 7.46 0.00 4.30
14 15 2.815647 CAAACCGAGCGCTCCCTC 60.816 66.667 30.66 8.16 0.00 4.30
15 16 4.394712 CCAAACCGAGCGCTCCCT 62.395 66.667 30.66 13.65 0.00 4.20
21 22 3.423154 GTCAGCCCAAACCGAGCG 61.423 66.667 0.00 0.00 0.00 5.03
22 23 3.056328 GGTCAGCCCAAACCGAGC 61.056 66.667 0.00 0.00 0.00 5.03
32 33 2.435059 GAAGCGACTGGGTCAGCC 60.435 66.667 0.00 0.00 34.52 4.85
33 34 1.739562 CTGAAGCGACTGGGTCAGC 60.740 63.158 0.00 0.00 34.37 4.26
34 35 0.389166 GTCTGAAGCGACTGGGTCAG 60.389 60.000 0.00 0.00 37.52 3.51
35 36 1.112916 TGTCTGAAGCGACTGGGTCA 61.113 55.000 0.00 0.00 35.00 4.02
36 37 0.247736 ATGTCTGAAGCGACTGGGTC 59.752 55.000 0.00 0.00 35.00 4.46
37 38 1.478510 CTATGTCTGAAGCGACTGGGT 59.521 52.381 0.00 0.00 35.00 4.51
38 39 1.804372 GCTATGTCTGAAGCGACTGGG 60.804 57.143 0.00 0.00 35.00 4.45
39 40 1.565305 GCTATGTCTGAAGCGACTGG 58.435 55.000 0.00 0.00 35.00 4.00
40 41 1.565305 GGCTATGTCTGAAGCGACTG 58.435 55.000 0.00 0.00 39.71 3.51
41 42 0.101399 CGGCTATGTCTGAAGCGACT 59.899 55.000 0.00 0.00 39.71 4.18
42 43 0.179134 ACGGCTATGTCTGAAGCGAC 60.179 55.000 0.00 0.00 39.71 5.19
43 44 0.530744 AACGGCTATGTCTGAAGCGA 59.469 50.000 0.00 0.00 39.71 4.93
44 45 2.203800 TAACGGCTATGTCTGAAGCG 57.796 50.000 0.00 0.00 39.71 4.68
45 46 3.248602 CCATTAACGGCTATGTCTGAAGC 59.751 47.826 0.00 0.00 38.03 3.86
66 67 1.369091 GACATCGGTGATGGTGTGCC 61.369 60.000 0.65 0.00 43.60 5.01
67 68 0.673333 TGACATCGGTGATGGTGTGC 60.673 55.000 0.65 0.00 43.60 4.57
68 69 1.066929 TCTGACATCGGTGATGGTGTG 60.067 52.381 0.65 0.00 43.60 3.82
69 70 1.066858 GTCTGACATCGGTGATGGTGT 60.067 52.381 0.65 0.00 43.60 4.16
70 71 1.645034 GTCTGACATCGGTGATGGTG 58.355 55.000 0.65 1.80 43.60 4.17
71 72 0.537188 GGTCTGACATCGGTGATGGT 59.463 55.000 0.65 0.00 43.60 3.55
72 73 0.528466 CGGTCTGACATCGGTGATGG 60.528 60.000 0.65 0.00 43.60 3.51
73 74 0.173481 ACGGTCTGACATCGGTGATG 59.827 55.000 0.65 5.29 44.71 3.07
74 75 0.173481 CACGGTCTGACATCGGTGAT 59.827 55.000 0.65 0.00 37.16 3.06
81 82 1.115467 GATCCCTCACGGTCTGACAT 58.885 55.000 10.38 0.00 0.00 3.06
86 87 2.060980 GGCTGATCCCTCACGGTCT 61.061 63.158 0.00 0.00 0.00 3.85
134 135 4.470334 AATTGATAGCGGCAAAAACCAT 57.530 36.364 1.45 0.00 0.00 3.55
170 177 2.040679 GGGGCTTTTCCACCAACTAGTA 59.959 50.000 0.00 0.00 36.21 1.82
173 180 1.154430 AGGGGCTTTTCCACCAACTA 58.846 50.000 0.00 0.00 39.90 2.24
177 184 0.404040 CAGTAGGGGCTTTTCCACCA 59.596 55.000 0.00 0.00 39.90 4.17
179 186 2.808906 ATCAGTAGGGGCTTTTCCAC 57.191 50.000 0.00 0.00 39.08 4.02
184 191 9.541884 TCTTTATTAAAAATCAGTAGGGGCTTT 57.458 29.630 0.00 0.00 0.00 3.51
188 195 9.695155 TCCTTCTTTATTAAAAATCAGTAGGGG 57.305 33.333 0.00 0.00 0.00 4.79
213 220 2.753452 TCTTACACGGGTCTCACATCTC 59.247 50.000 0.00 0.00 0.00 2.75
226 233 1.135603 TCGGACATCGGTTCTTACACG 60.136 52.381 0.00 0.00 39.77 4.49
240 247 1.088306 GTGTTGTGTTGGTTCGGACA 58.912 50.000 0.00 0.00 0.00 4.02
243 250 1.663695 AGAGTGTTGTGTTGGTTCGG 58.336 50.000 0.00 0.00 0.00 4.30
255 279 6.726490 TCTTAGTTCAGTGGTTAGAGTGTT 57.274 37.500 0.00 0.00 0.00 3.32
256 280 5.279056 GCTCTTAGTTCAGTGGTTAGAGTGT 60.279 44.000 0.00 0.00 32.34 3.55
272 296 2.826488 AGTGGTGGATGAGCTCTTAGT 58.174 47.619 16.19 0.00 0.00 2.24
292 316 3.930229 CACACCGAACCGAAATTCTGATA 59.070 43.478 0.00 0.00 0.00 2.15
321 345 0.661020 CCACCACTTCACGGTTTCAC 59.339 55.000 0.00 0.00 33.25 3.18
322 346 0.253610 ACCACCACTTCACGGTTTCA 59.746 50.000 0.00 0.00 33.25 2.69
323 347 1.385528 AACCACCACTTCACGGTTTC 58.614 50.000 0.00 0.00 38.60 2.78
327 351 0.666374 GGAAAACCACCACTTCACGG 59.334 55.000 0.00 0.00 0.00 4.94
331 355 0.741915 TTGCGGAAAACCACCACTTC 59.258 50.000 0.00 0.00 0.00 3.01
345 369 3.785521 CACATTCGTGTTATGATTTGCGG 59.214 43.478 0.00 0.00 38.41 5.69
349 373 6.757897 ACCATCACATTCGTGTTATGATTT 57.242 33.333 4.73 0.00 44.02 2.17
356 479 3.250762 CACAGAACCATCACATTCGTGTT 59.749 43.478 0.00 0.00 44.02 3.32
388 511 1.546923 CTTGCAAATGTGAGGGCATCA 59.453 47.619 0.00 0.00 35.98 3.07
395 518 0.037975 GTGGCCCTTGCAAATGTGAG 60.038 55.000 0.00 0.00 40.13 3.51
433 556 9.839589 CGAAAGAATGCAATATTATTTTCAAGC 57.160 29.630 0.00 0.00 0.00 4.01
442 565 4.814234 AGGCGACGAAAGAATGCAATATTA 59.186 37.500 0.00 0.00 0.00 0.98
443 566 3.627577 AGGCGACGAAAGAATGCAATATT 59.372 39.130 0.00 0.00 0.00 1.28
445 568 2.627945 AGGCGACGAAAGAATGCAATA 58.372 42.857 0.00 0.00 0.00 1.90
446 569 1.453155 AGGCGACGAAAGAATGCAAT 58.547 45.000 0.00 0.00 0.00 3.56
447 570 1.999735 CTAGGCGACGAAAGAATGCAA 59.000 47.619 0.00 0.00 0.00 4.08
486 610 1.740380 CGTCCAACCAGCAGATTCGAT 60.740 52.381 0.00 0.00 0.00 3.59
493 617 2.257409 ATAGCCCGTCCAACCAGCAG 62.257 60.000 0.00 0.00 0.00 4.24
495 619 0.396811 ATATAGCCCGTCCAACCAGC 59.603 55.000 0.00 0.00 0.00 4.85
532 656 2.876550 AGACAAAGTCACGGCCTTTTAC 59.123 45.455 0.00 0.00 34.60 2.01
543 670 4.081142 TGGAGTCACTTTCAGACAAAGTCA 60.081 41.667 0.00 0.00 38.32 3.41
550 677 1.140816 GCGTGGAGTCACTTTCAGAC 58.859 55.000 0.00 0.00 41.53 3.51
551 678 0.750249 TGCGTGGAGTCACTTTCAGA 59.250 50.000 0.00 0.00 41.53 3.27
553 680 0.464036 AGTGCGTGGAGTCACTTTCA 59.536 50.000 0.00 0.00 40.32 2.69
554 681 2.433868 TAGTGCGTGGAGTCACTTTC 57.566 50.000 0.01 0.00 42.81 2.62
555 682 2.902705 TTAGTGCGTGGAGTCACTTT 57.097 45.000 0.01 0.00 42.81 2.66
556 683 2.688507 CATTAGTGCGTGGAGTCACTT 58.311 47.619 0.01 0.00 42.81 3.16
557 684 1.673033 GCATTAGTGCGTGGAGTCACT 60.673 52.381 0.00 0.00 44.76 3.41
559 686 3.137484 GCATTAGTGCGTGGAGTCA 57.863 52.632 0.00 0.00 42.28 3.41
625 1193 1.923204 CTTCTTTCAGAGATGCCGACG 59.077 52.381 0.00 0.00 33.49 5.12
684 1253 6.072199 AGGTCTCTTTTCTGCTGGAAATAT 57.928 37.500 0.00 0.00 42.63 1.28
723 1295 1.738099 CTCCACCACGCACTAGCAC 60.738 63.158 0.00 0.00 42.27 4.40
767 1345 3.414700 GGTTCCTGAGTGCGTGCG 61.415 66.667 0.00 0.00 0.00 5.34
768 1346 3.414700 CGGTTCCTGAGTGCGTGC 61.415 66.667 0.00 0.00 0.00 5.34
769 1347 2.022129 GTCGGTTCCTGAGTGCGTG 61.022 63.158 0.00 0.00 0.00 5.34
770 1348 2.338984 GTCGGTTCCTGAGTGCGT 59.661 61.111 0.00 0.00 0.00 5.24
782 1360 1.227943 AGTTGTGCATGCTGTCGGT 60.228 52.632 20.33 0.00 0.00 4.69
798 1376 3.031736 AGCTAACGACATGGGTATGAGT 58.968 45.455 0.00 0.00 37.73 3.41
799 1377 3.643763 GAGCTAACGACATGGGTATGAG 58.356 50.000 0.00 0.00 37.73 2.90
800 1378 2.034179 CGAGCTAACGACATGGGTATGA 59.966 50.000 0.00 0.00 37.73 2.15
801 1379 2.223735 ACGAGCTAACGACATGGGTATG 60.224 50.000 1.33 0.00 37.24 2.39
802 1380 2.029623 ACGAGCTAACGACATGGGTAT 58.970 47.619 1.33 0.00 37.03 2.73
803 1381 1.133598 CACGAGCTAACGACATGGGTA 59.866 52.381 1.33 0.00 37.03 3.69
872 1464 1.499949 GTGGAGCGCGCATTTAACA 59.500 52.632 35.10 18.48 0.00 2.41
873 1465 1.226295 GGTGGAGCGCGCATTTAAC 60.226 57.895 35.10 21.82 0.00 2.01
937 1537 1.379176 AGCTCGCCAGACTAGCTGA 60.379 57.895 13.65 0.00 45.18 4.26
941 1541 2.017782 TGTAAGAGCTCGCCAGACTAG 58.982 52.381 8.37 0.00 0.00 2.57
947 1547 1.795768 CAGTTTGTAAGAGCTCGCCA 58.204 50.000 8.37 3.42 0.00 5.69
965 1565 2.033141 GCTGCTGGGAGACTTGCA 59.967 61.111 0.00 0.00 37.11 4.08
986 1588 2.056223 GCCATGTGGATGCCTTGCT 61.056 57.895 2.55 0.00 37.39 3.91
997 1599 3.118454 GGACCACGACGCCATGTG 61.118 66.667 0.00 0.00 35.87 3.21
998 1600 3.621805 TGGACCACGACGCCATGT 61.622 61.111 0.00 0.00 0.00 3.21
1040 1644 4.657824 CCGCCAACGTCGTGGTCT 62.658 66.667 8.05 0.00 41.12 3.85
1045 1649 3.502990 TTACAGCCGCCAACGTCGT 62.503 57.895 0.00 0.00 37.70 4.34
1046 1650 2.726691 CTTACAGCCGCCAACGTCG 61.727 63.158 0.00 0.00 37.70 5.12
1047 1651 3.023591 GCTTACAGCCGCCAACGTC 62.024 63.158 0.00 0.00 34.48 4.34
1052 1657 1.540363 GCTATTAGCTTACAGCCGCCA 60.540 52.381 8.47 0.00 43.77 5.69
1067 1672 2.343625 GGAGGGAGGGATGAAGCTATT 58.656 52.381 0.00 0.00 0.00 1.73
1100 1705 4.035208 CCACTTTTCGTGTTGCTCTACTTT 59.965 41.667 0.00 0.00 42.20 2.66
1109 1714 0.100325 TGCAGCCACTTTTCGTGTTG 59.900 50.000 0.00 0.00 42.20 3.33
1115 1725 1.583477 GCCTCTGCAGCCACTTTTC 59.417 57.895 9.47 0.00 37.47 2.29
1116 1726 3.769201 GCCTCTGCAGCCACTTTT 58.231 55.556 9.47 0.00 37.47 2.27
1124 1734 4.527583 GGAGCTCGGCCTCTGCAG 62.528 72.222 7.63 7.63 40.13 4.41
1126 1736 3.397613 AATGGAGCTCGGCCTCTGC 62.398 63.158 7.83 1.79 32.43 4.26
1127 1737 1.523258 CAATGGAGCTCGGCCTCTG 60.523 63.158 7.83 0.00 32.43 3.35
1128 1738 1.684386 CTCAATGGAGCTCGGCCTCT 61.684 60.000 7.83 0.00 33.67 3.69
1129 1739 1.227497 CTCAATGGAGCTCGGCCTC 60.227 63.158 7.83 0.00 33.67 4.70
1130 1740 2.906458 CTCAATGGAGCTCGGCCT 59.094 61.111 7.83 0.00 33.67 5.19
1138 1748 9.585099 GAGAAATGTATATAGAGCTCAATGGAG 57.415 37.037 17.77 0.00 44.33 3.86
1139 1749 9.093458 TGAGAAATGTATATAGAGCTCAATGGA 57.907 33.333 17.77 0.00 0.00 3.41
1140 1750 9.368674 CTGAGAAATGTATATAGAGCTCAATGG 57.631 37.037 17.77 0.00 31.59 3.16
1141 1751 8.871862 GCTGAGAAATGTATATAGAGCTCAATG 58.128 37.037 17.77 3.61 31.59 2.82
1142 1752 8.040132 GGCTGAGAAATGTATATAGAGCTCAAT 58.960 37.037 17.77 8.87 31.59 2.57
1143 1753 7.015584 TGGCTGAGAAATGTATATAGAGCTCAA 59.984 37.037 17.77 0.65 31.59 3.02
1144 1754 6.494835 TGGCTGAGAAATGTATATAGAGCTCA 59.505 38.462 17.77 2.09 0.00 4.26
1145 1755 6.929625 TGGCTGAGAAATGTATATAGAGCTC 58.070 40.000 5.27 5.27 0.00 4.09
1146 1756 6.924913 TGGCTGAGAAATGTATATAGAGCT 57.075 37.500 0.00 0.00 0.00 4.09
1147 1757 7.969536 TTTGGCTGAGAAATGTATATAGAGC 57.030 36.000 0.00 0.00 0.00 4.09
1152 1762 9.646522 AAGGTATTTTGGCTGAGAAATGTATAT 57.353 29.630 0.00 0.00 0.00 0.86
1153 1763 9.474313 AAAGGTATTTTGGCTGAGAAATGTATA 57.526 29.630 0.00 0.00 0.00 1.47
1154 1764 7.961326 AAGGTATTTTGGCTGAGAAATGTAT 57.039 32.000 0.00 0.00 0.00 2.29
1155 1765 7.775053 AAAGGTATTTTGGCTGAGAAATGTA 57.225 32.000 0.00 0.00 0.00 2.29
1156 1766 6.670695 AAAGGTATTTTGGCTGAGAAATGT 57.329 33.333 0.00 0.00 0.00 2.71
1157 1767 7.656948 TGAAAAAGGTATTTTGGCTGAGAAATG 59.343 33.333 0.00 0.00 38.62 2.32
1158 1768 7.734942 TGAAAAAGGTATTTTGGCTGAGAAAT 58.265 30.769 0.00 0.00 38.62 2.17
1159 1769 7.118496 TGAAAAAGGTATTTTGGCTGAGAAA 57.882 32.000 0.00 0.00 38.62 2.52
1160 1770 6.723298 TGAAAAAGGTATTTTGGCTGAGAA 57.277 33.333 0.00 0.00 38.62 2.87
1161 1771 6.916360 ATGAAAAAGGTATTTTGGCTGAGA 57.084 33.333 0.00 0.00 38.62 3.27
1162 1772 8.306761 AGTTATGAAAAAGGTATTTTGGCTGAG 58.693 33.333 0.00 0.00 38.62 3.35
1163 1773 8.189119 AGTTATGAAAAAGGTATTTTGGCTGA 57.811 30.769 0.00 0.00 38.62 4.26
1164 1774 8.087750 TGAGTTATGAAAAAGGTATTTTGGCTG 58.912 33.333 0.00 0.00 38.62 4.85
1165 1775 8.189119 TGAGTTATGAAAAAGGTATTTTGGCT 57.811 30.769 0.00 0.00 38.62 4.75
1166 1776 8.825667 TTGAGTTATGAAAAAGGTATTTTGGC 57.174 30.769 0.00 0.00 38.62 4.52
1216 1826 9.806203 ACACGCATACTTAAGTATATGTTTACA 57.194 29.630 24.29 0.00 39.06 2.41
1219 1829 9.806203 TGTACACGCATACTTAAGTATATGTTT 57.194 29.630 27.44 21.95 39.06 2.83
1220 1830 9.806203 TTGTACACGCATACTTAAGTATATGTT 57.194 29.630 27.44 19.72 39.06 2.71
1221 1831 9.806203 TTTGTACACGCATACTTAAGTATATGT 57.194 29.630 26.44 26.44 39.06 2.29
1288 1898 8.462016 GCCTATTTCAATCTGTGTATTTGTCTT 58.538 33.333 0.00 0.00 0.00 3.01
1289 1899 7.831193 AGCCTATTTCAATCTGTGTATTTGTCT 59.169 33.333 0.00 0.00 0.00 3.41
1290 1900 7.989826 AGCCTATTTCAATCTGTGTATTTGTC 58.010 34.615 0.00 0.00 0.00 3.18
1291 1901 7.944729 AGCCTATTTCAATCTGTGTATTTGT 57.055 32.000 0.00 0.00 0.00 2.83
1292 1902 9.643693 AAAAGCCTATTTCAATCTGTGTATTTG 57.356 29.630 0.00 0.00 0.00 2.32
1294 1904 9.860898 GAAAAAGCCTATTTCAATCTGTGTATT 57.139 29.630 2.58 0.00 36.89 1.89
1295 1905 9.247861 AGAAAAAGCCTATTTCAATCTGTGTAT 57.752 29.630 8.59 0.00 38.86 2.29
1296 1906 8.635765 AGAAAAAGCCTATTTCAATCTGTGTA 57.364 30.769 8.59 0.00 38.86 2.90
1297 1907 7.530426 AGAAAAAGCCTATTTCAATCTGTGT 57.470 32.000 8.59 0.00 38.86 3.72
1298 1908 8.706035 CAAAGAAAAAGCCTATTTCAATCTGTG 58.294 33.333 8.59 0.00 38.86 3.66
1299 1909 8.424133 ACAAAGAAAAAGCCTATTTCAATCTGT 58.576 29.630 8.59 4.29 38.86 3.41
1300 1910 8.822652 ACAAAGAAAAAGCCTATTTCAATCTG 57.177 30.769 8.59 3.84 38.86 2.90
1301 1911 9.264719 CAACAAAGAAAAAGCCTATTTCAATCT 57.735 29.630 8.59 0.00 38.86 2.40
1302 1912 9.045223 ACAACAAAGAAAAAGCCTATTTCAATC 57.955 29.630 8.59 0.00 38.86 2.67
1303 1913 8.962884 ACAACAAAGAAAAAGCCTATTTCAAT 57.037 26.923 8.59 0.00 38.86 2.57
1308 1918 9.830975 ACAAATACAACAAAGAAAAAGCCTATT 57.169 25.926 0.00 0.00 0.00 1.73
1309 1919 9.260002 CACAAATACAACAAAGAAAAAGCCTAT 57.740 29.630 0.00 0.00 0.00 2.57
1310 1920 8.254508 ACACAAATACAACAAAGAAAAAGCCTA 58.745 29.630 0.00 0.00 0.00 3.93
1311 1921 7.102993 ACACAAATACAACAAAGAAAAAGCCT 58.897 30.769 0.00 0.00 0.00 4.58
1312 1922 7.302350 ACACAAATACAACAAAGAAAAAGCC 57.698 32.000 0.00 0.00 0.00 4.35
1313 1923 9.900264 CTAACACAAATACAACAAAGAAAAAGC 57.100 29.630 0.00 0.00 0.00 3.51
1350 1960 8.599055 TTTATCATTTGCATGCTACACAAAAA 57.401 26.923 20.33 9.35 36.90 1.94
1351 1961 8.599055 TTTTATCATTTGCATGCTACACAAAA 57.401 26.923 20.33 10.10 36.90 2.44
1352 1962 8.774890 ATTTTATCATTTGCATGCTACACAAA 57.225 26.923 20.33 10.86 37.66 2.83
1353 1963 8.774890 AATTTTATCATTTGCATGCTACACAA 57.225 26.923 20.33 0.58 0.00 3.33
1354 1964 9.518906 CTAATTTTATCATTTGCATGCTACACA 57.481 29.630 20.33 0.13 0.00 3.72
1355 1965 9.520204 ACTAATTTTATCATTTGCATGCTACAC 57.480 29.630 20.33 0.00 0.00 2.90
1473 2083 4.580995 TCCATGGAGCTCGTTTTGTAAAAA 59.419 37.500 11.44 0.00 0.00 1.94
1474 2084 4.138290 TCCATGGAGCTCGTTTTGTAAAA 58.862 39.130 11.44 0.00 0.00 1.52
1475 2085 3.745799 TCCATGGAGCTCGTTTTGTAAA 58.254 40.909 11.44 0.00 0.00 2.01
1476 2086 3.334691 CTCCATGGAGCTCGTTTTGTAA 58.665 45.455 28.45 0.00 35.31 2.41
1477 2087 2.972625 CTCCATGGAGCTCGTTTTGTA 58.027 47.619 28.45 0.00 35.31 2.41
1478 2088 1.813513 CTCCATGGAGCTCGTTTTGT 58.186 50.000 28.45 0.00 35.31 2.83
1488 2098 1.915078 AAAGACCGGGCTCCATGGAG 61.915 60.000 33.73 33.73 44.56 3.86
1489 2099 1.923395 AAAGACCGGGCTCCATGGA 60.923 57.895 12.33 15.27 0.00 3.41
1490 2100 1.750399 CAAAGACCGGGCTCCATGG 60.750 63.158 12.33 4.97 0.00 3.66
1491 2101 2.409870 GCAAAGACCGGGCTCCATG 61.410 63.158 12.33 12.25 0.00 3.66
1492 2102 2.044946 GCAAAGACCGGGCTCCAT 60.045 61.111 12.33 0.00 0.00 3.41
1493 2103 3.126703 TTGCAAAGACCGGGCTCCA 62.127 57.895 12.33 5.56 0.00 3.86
1494 2104 2.282180 TTGCAAAGACCGGGCTCC 60.282 61.111 12.33 2.23 0.00 4.70
1495 2105 2.954611 GTTGCAAAGACCGGGCTC 59.045 61.111 12.33 0.00 0.00 4.70
1496 2106 2.978010 CGTTGCAAAGACCGGGCT 60.978 61.111 2.12 2.12 0.00 5.19
1497 2107 4.700365 GCGTTGCAAAGACCGGGC 62.700 66.667 16.93 0.52 0.00 6.13
1498 2108 4.038080 GGCGTTGCAAAGACCGGG 62.038 66.667 16.93 0.00 0.00 5.73
1499 2109 4.383602 CGGCGTTGCAAAGACCGG 62.384 66.667 27.19 0.00 40.67 5.28
1501 2111 3.959975 TGCGGCGTTGCAAAGACC 61.960 61.111 16.93 14.66 43.02 3.85
1507 2117 2.432456 CTAGAGTGCGGCGTTGCA 60.432 61.111 9.37 0.00 43.95 4.08
1508 2118 2.126071 TCTAGAGTGCGGCGTTGC 60.126 61.111 9.37 0.00 0.00 4.17
1509 2119 2.161486 GCTCTAGAGTGCGGCGTTG 61.161 63.158 20.75 0.00 0.00 4.10
1510 2120 2.154798 TTGCTCTAGAGTGCGGCGTT 62.155 55.000 20.75 0.00 37.35 4.84
1511 2121 2.636412 TTGCTCTAGAGTGCGGCGT 61.636 57.895 20.75 0.00 37.35 5.68
1512 2122 2.161486 GTTGCTCTAGAGTGCGGCG 61.161 63.158 20.75 0.51 37.35 6.46
1513 2123 1.079819 TGTTGCTCTAGAGTGCGGC 60.080 57.895 20.75 7.75 37.35 6.53
1514 2124 0.737715 GGTGTTGCTCTAGAGTGCGG 60.738 60.000 20.75 0.00 37.35 5.69
1515 2125 1.073216 CGGTGTTGCTCTAGAGTGCG 61.073 60.000 20.75 0.00 37.35 5.34
1516 2126 1.355066 GCGGTGTTGCTCTAGAGTGC 61.355 60.000 20.75 9.24 35.32 4.40
1517 2127 0.244994 AGCGGTGTTGCTCTAGAGTG 59.755 55.000 20.75 0.00 42.95 3.51
1518 2128 1.835494 TAGCGGTGTTGCTCTAGAGT 58.165 50.000 20.75 0.48 45.87 3.24
1519 2129 3.566322 ACTATAGCGGTGTTGCTCTAGAG 59.434 47.826 15.85 15.85 45.87 2.43
1520 2130 3.315470 CACTATAGCGGTGTTGCTCTAGA 59.685 47.826 13.07 0.00 45.87 2.43
1521 2131 3.633235 CACTATAGCGGTGTTGCTCTAG 58.367 50.000 0.00 6.61 45.87 2.43
1522 2132 2.223735 GCACTATAGCGGTGTTGCTCTA 60.224 50.000 0.00 0.00 45.87 2.43
1523 2133 1.471676 GCACTATAGCGGTGTTGCTCT 60.472 52.381 0.00 0.00 45.87 4.09
1524 2134 0.931005 GCACTATAGCGGTGTTGCTC 59.069 55.000 0.00 0.00 45.87 4.26
1526 2136 1.062587 CAAGCACTATAGCGGTGTTGC 59.937 52.381 0.00 0.00 40.15 4.17
1527 2137 2.094258 CACAAGCACTATAGCGGTGTTG 59.906 50.000 0.00 0.00 38.77 3.33
1528 2138 2.028476 TCACAAGCACTATAGCGGTGTT 60.028 45.455 0.00 0.00 41.86 3.32
1529 2139 1.548719 TCACAAGCACTATAGCGGTGT 59.451 47.619 0.00 0.00 41.86 4.16
1530 2140 2.293677 TCACAAGCACTATAGCGGTG 57.706 50.000 0.00 3.05 42.24 4.94
1531 2141 2.430694 TCATCACAAGCACTATAGCGGT 59.569 45.455 0.00 0.00 40.15 5.68
1532 2142 3.055591 CTCATCACAAGCACTATAGCGG 58.944 50.000 0.00 0.00 40.15 5.52
1533 2143 2.474359 GCTCATCACAAGCACTATAGCG 59.526 50.000 0.00 0.00 39.61 4.26
1534 2144 3.461061 TGCTCATCACAAGCACTATAGC 58.539 45.455 0.00 0.00 44.51 2.97
1535 2145 3.493877 GCTGCTCATCACAAGCACTATAG 59.506 47.826 0.00 0.00 44.51 1.31
1539 2149 0.250597 TGCTGCTCATCACAAGCACT 60.251 50.000 0.00 0.00 44.51 4.40
1561 2171 6.535274 ACGTGTGTGGTAGAAAAATAACTC 57.465 37.500 0.00 0.00 0.00 3.01
1565 2175 5.124645 ACCAACGTGTGTGGTAGAAAAATA 58.875 37.500 8.66 0.00 33.61 1.40
1591 2203 0.734597 CAAATTTACCGCCGGGCAAC 60.735 55.000 20.71 0.00 36.48 4.17
1594 2206 1.879737 AACCAAATTTACCGCCGGGC 61.880 55.000 8.57 9.54 36.48 6.13
1596 2208 2.946990 AGATAACCAAATTTACCGCCGG 59.053 45.455 0.00 0.00 0.00 6.13
1682 2316 4.670175 GCGTCCAAATTCAAAATTTGCAAC 59.330 37.500 16.14 14.57 37.60 4.17
1694 2328 1.265905 ACAAGTTCGGCGTCCAAATTC 59.734 47.619 6.85 0.00 0.00 2.17
1700 2334 2.573941 ACTATACAAGTTCGGCGTCC 57.426 50.000 6.85 0.00 33.35 4.79
1701 2335 4.284378 ACTACTATACAAGTTCGGCGTC 57.716 45.455 6.85 1.37 39.80 5.19
1730 2483 0.678395 ATGAGAGGCTGATGCTACGG 59.322 55.000 0.00 0.00 39.59 4.02
1740 2493 9.594936 AGTAGTTATCTTACATTATGAGAGGCT 57.405 33.333 0.00 0.00 0.00 4.58
1762 2515 3.015327 ACCACTACGCCAAGACTAGTAG 58.985 50.000 0.00 0.00 41.49 2.57
1763 2516 3.077484 ACCACTACGCCAAGACTAGTA 57.923 47.619 0.00 0.00 0.00 1.82
1887 2640 5.873712 ACTATCAAGTGCAGAGACAGAAATG 59.126 40.000 0.00 0.00 33.57 2.32
1983 2753 2.994995 ACCGTCGTCATGGCCAGA 60.995 61.111 13.05 6.16 30.57 3.86
2002 2772 2.436115 GTAGAAGCCGGTGCCCAC 60.436 66.667 1.90 0.00 38.69 4.61
2004 2774 2.187163 GAGTAGAAGCCGGTGCCC 59.813 66.667 1.90 0.00 38.69 5.36
2148 2918 2.379634 CGCGCTCATGTCGAAACCA 61.380 57.895 5.56 0.00 0.00 3.67
2151 2921 2.572095 ATCCCGCGCTCATGTCGAAA 62.572 55.000 5.56 0.00 0.00 3.46
2239 3009 0.889994 TGCACTGCATTTGGATCCAC 59.110 50.000 15.91 3.14 31.71 4.02
2240 3010 0.889994 GTGCACTGCATTTGGATCCA 59.110 50.000 11.44 11.44 41.91 3.41
2241 3011 0.889994 TGTGCACTGCATTTGGATCC 59.110 50.000 19.41 4.20 41.91 3.36
2270 3040 4.808414 AGAAGCTGCATGTTGACTACTA 57.192 40.909 1.02 0.00 0.00 1.82
2321 3113 9.747898 TTGAGGGTTCACTAACACATATTAATT 57.252 29.630 0.00 0.00 41.81 1.40
2322 3114 9.747898 TTTGAGGGTTCACTAACACATATTAAT 57.252 29.630 0.00 0.00 41.81 1.40
2323 3115 9.575868 TTTTGAGGGTTCACTAACACATATTAA 57.424 29.630 0.00 0.00 41.81 1.40
2365 3163 2.148768 CCGGAGTTACAGGAAAACACC 58.851 52.381 0.00 0.00 35.91 4.16
2378 3176 4.695455 CAGTAACATGATTTCACCGGAGTT 59.305 41.667 9.46 1.13 0.00 3.01
2379 3177 4.253685 CAGTAACATGATTTCACCGGAGT 58.746 43.478 9.46 0.00 0.00 3.85
2381 3179 4.000325 CACAGTAACATGATTTCACCGGA 59.000 43.478 9.46 0.00 0.00 5.14
2382 3180 3.751175 ACACAGTAACATGATTTCACCGG 59.249 43.478 0.00 0.00 0.00 5.28
2383 3181 4.711721 CACACAGTAACATGATTTCACCG 58.288 43.478 0.00 0.00 0.00 4.94
2384 3182 4.023279 TGCACACAGTAACATGATTTCACC 60.023 41.667 0.00 0.00 0.00 4.02
2403 3322 3.443045 CCCATCCCGCACTTGCAC 61.443 66.667 1.48 0.00 42.21 4.57
2405 3324 2.361104 TTCCCATCCCGCACTTGC 60.361 61.111 0.00 0.00 37.78 4.01
2407 3326 1.271840 TAGCTTCCCATCCCGCACTT 61.272 55.000 0.00 0.00 0.00 3.16
2408 3327 1.689233 TAGCTTCCCATCCCGCACT 60.689 57.895 0.00 0.00 0.00 4.40
2410 3329 3.106986 GCTAGCTTCCCATCCCGCA 62.107 63.158 7.70 0.00 0.00 5.69
2411 3330 2.281139 GCTAGCTTCCCATCCCGC 60.281 66.667 7.70 0.00 0.00 6.13
2412 3331 1.048601 TAAGCTAGCTTCCCATCCCG 58.951 55.000 32.51 0.00 37.47 5.14
2413 3332 2.439880 ACTTAAGCTAGCTTCCCATCCC 59.560 50.000 32.51 0.00 37.47 3.85
2414 3333 3.389656 AGACTTAAGCTAGCTTCCCATCC 59.610 47.826 32.51 17.25 37.47 3.51
2415 3334 4.681074 AGACTTAAGCTAGCTTCCCATC 57.319 45.455 32.51 23.25 37.47 3.51
2416 3335 4.471386 TCAAGACTTAAGCTAGCTTCCCAT 59.529 41.667 32.51 16.90 37.47 4.00
2417 3336 3.838317 TCAAGACTTAAGCTAGCTTCCCA 59.162 43.478 32.51 13.83 37.47 4.37
2418 3337 4.473477 TCAAGACTTAAGCTAGCTTCCC 57.527 45.455 32.51 18.86 37.47 3.97
2419 3338 5.220758 GCATTCAAGACTTAAGCTAGCTTCC 60.221 44.000 32.51 19.18 37.47 3.46
2420 3339 5.352569 TGCATTCAAGACTTAAGCTAGCTTC 59.647 40.000 32.51 18.83 37.47 3.86
2421 3340 5.248640 TGCATTCAAGACTTAAGCTAGCTT 58.751 37.500 31.38 31.38 39.83 3.74
2422 3341 4.836825 TGCATTCAAGACTTAAGCTAGCT 58.163 39.130 12.68 12.68 0.00 3.32
2438 3357 4.022416 TCACAACACCCATTAACTGCATTC 60.022 41.667 0.00 0.00 0.00 2.67
2476 3395 2.457366 ATGTCCAAGTCAAGTCGTCC 57.543 50.000 0.00 0.00 0.00 4.79
2497 3416 2.184533 TCCTTCGGAGGCTTTCATGTA 58.815 47.619 4.24 0.00 43.21 2.29
2511 3430 3.485947 TCCGCAATTTTCAATCCTTCG 57.514 42.857 0.00 0.00 0.00 3.79
2528 3447 4.383052 GTCTTACGCATCATACAAGATCCG 59.617 45.833 0.00 0.00 35.38 4.18
2538 3457 1.037493 TAGCCGGTCTTACGCATCAT 58.963 50.000 1.90 0.00 0.00 2.45
2539 3458 0.818938 TTAGCCGGTCTTACGCATCA 59.181 50.000 1.90 0.00 0.00 3.07
2580 3499 5.396324 AAACTTCCCTGTTTGCCTTTAAAGG 60.396 40.000 27.13 27.13 39.53 3.11
2584 3503 4.141824 CCAAAACTTCCCTGTTTGCCTTTA 60.142 41.667 0.00 0.00 39.71 1.85
2589 3508 1.760029 TCCCAAAACTTCCCTGTTTGC 59.240 47.619 0.00 0.00 39.71 3.68
2590 3509 2.102420 GGTCCCAAAACTTCCCTGTTTG 59.898 50.000 0.00 0.00 39.71 2.93
2592 3511 1.412505 GGGTCCCAAAACTTCCCTGTT 60.413 52.381 1.78 0.00 35.63 3.16
2593 3512 0.187606 GGGTCCCAAAACTTCCCTGT 59.812 55.000 1.78 0.00 35.63 4.00
2594 3513 0.187361 TGGGTCCCAAAACTTCCCTG 59.813 55.000 8.65 0.00 38.95 4.45
2595 3514 0.938192 TTGGGTCCCAAAACTTCCCT 59.062 50.000 21.74 0.00 40.92 4.20
2596 3515 3.543112 TTGGGTCCCAAAACTTCCC 57.457 52.632 21.74 0.00 40.92 3.97
2621 3540 0.447801 CACCTATGGCGCTCAAACAC 59.552 55.000 7.64 0.00 0.00 3.32
2623 3542 1.305219 TGCACCTATGGCGCTCAAAC 61.305 55.000 7.64 0.00 0.00 2.93
2656 3575 0.667184 GTTGGGCCTGTTGCAATTCG 60.667 55.000 0.59 0.00 43.89 3.34
2665 3584 1.423541 TGAACATACTGTTGGGCCTGT 59.576 47.619 4.53 0.00 41.28 4.00
2679 3598 3.871594 GCTAGCAGATTTACCGTGAACAT 59.128 43.478 10.63 0.00 0.00 2.71
2698 3617 3.704566 CAGGTCCACACTATACTTGGCTA 59.295 47.826 0.00 0.00 0.00 3.93
2719 3638 4.798882 ACTAATTCACAAACCCCTTGTCA 58.201 39.130 0.00 0.00 45.50 3.58
2720 3639 5.784578 AACTAATTCACAAACCCCTTGTC 57.215 39.130 0.00 0.00 45.50 3.18
2722 3641 5.296748 CCAAACTAATTCACAAACCCCTTG 58.703 41.667 0.00 0.00 41.19 3.61
2723 3642 4.346709 CCCAAACTAATTCACAAACCCCTT 59.653 41.667 0.00 0.00 0.00 3.95
2724 3643 3.901222 CCCAAACTAATTCACAAACCCCT 59.099 43.478 0.00 0.00 0.00 4.79
2725 3644 3.898741 TCCCAAACTAATTCACAAACCCC 59.101 43.478 0.00 0.00 0.00 4.95
2726 3645 5.538118 CTTCCCAAACTAATTCACAAACCC 58.462 41.667 0.00 0.00 0.00 4.11
2727 3646 4.988540 GCTTCCCAAACTAATTCACAAACC 59.011 41.667 0.00 0.00 0.00 3.27
2728 3647 4.679654 CGCTTCCCAAACTAATTCACAAAC 59.320 41.667 0.00 0.00 0.00 2.93
2753 3672 4.716003 CCCGAGACAAAGGGTTCC 57.284 61.111 0.00 0.00 42.67 3.62
2794 3713 3.071479 CTGTAAACGTATGCACCAAGGT 58.929 45.455 0.00 0.00 0.00 3.50
2865 3784 7.608376 CCAACTCTATCTCATCGTCTCCTTATA 59.392 40.741 0.00 0.00 0.00 0.98
2875 3814 6.976088 ACTTGTATCCAACTCTATCTCATCG 58.024 40.000 0.00 0.00 0.00 3.84
2959 3898 4.973168 ACAATCTCAACCTTAGCAAGACA 58.027 39.130 0.00 0.00 0.00 3.41
2961 3900 6.360370 AGTACAATCTCAACCTTAGCAAGA 57.640 37.500 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.