Multiple sequence alignment - TraesCS2A01G013100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G013100 chr2A 100.000 1674 0 0 675 2348 5291440 5289767 0.000000e+00 3092.0
1 TraesCS2A01G013100 chr2A 100.000 196 0 0 1 196 5292114 5291919 1.720000e-96 363.0
2 TraesCS2A01G013100 chr2A 79.255 188 27 9 2157 2343 5534595 5534771 1.140000e-23 121.0
3 TraesCS2A01G013100 chr3B 91.620 895 44 7 675 1544 724187632 724186744 0.000000e+00 1208.0
4 TraesCS2A01G013100 chr3B 87.154 397 35 7 1543 1929 724186679 724186289 9.960000e-119 436.0
5 TraesCS2A01G013100 chr3A 89.457 920 64 24 675 1585 24199858 24200753 0.000000e+00 1131.0
6 TraesCS2A01G013100 chr3A 91.822 697 36 12 675 1352 683548971 683548277 0.000000e+00 952.0
7 TraesCS2A01G013100 chr3A 94.487 526 28 1 828 1352 683681791 683681266 0.000000e+00 809.0
8 TraesCS2A01G013100 chr3A 90.278 504 38 6 1436 1929 683681246 683680744 0.000000e+00 649.0
9 TraesCS2A01G013100 chr3A 92.461 451 31 2 1436 1883 683548257 683547807 1.970000e-180 641.0
10 TraesCS2A01G013100 chr3A 88.608 316 30 3 1620 1929 24201305 24201620 1.700000e-101 379.0
11 TraesCS2A01G013100 chr3A 91.457 199 13 2 1 196 683683967 683683770 1.070000e-68 270.0
12 TraesCS2A01G013100 chr3A 91.414 198 14 1 2 196 683549668 683549471 3.850000e-68 268.0
13 TraesCS2A01G013100 chr3A 89.899 198 16 2 1 196 24198873 24199068 3.870000e-63 252.0
14 TraesCS2A01G013100 chr3A 90.000 100 8 2 675 774 683683253 683683156 6.810000e-26 128.0
15 TraesCS2A01G013100 chr4B 91.247 754 36 7 675 1403 604887959 604888707 0.000000e+00 1000.0
16 TraesCS2A01G013100 chr4B 91.414 198 13 2 1 196 604887662 604887857 3.850000e-68 268.0
17 TraesCS2A01G013100 chr4B 93.082 159 10 1 1414 1571 604888784 604888942 5.050000e-57 231.0
18 TraesCS2A01G013100 chr4B 87.117 163 15 5 1773 1929 604889120 604889282 1.850000e-41 180.0
19 TraesCS2A01G013100 chr4B 95.556 45 1 1 1884 1928 424024573 424024616 1.160000e-08 71.3
20 TraesCS2A01G013100 chr3D 92.168 715 28 5 675 1364 547002036 547001325 0.000000e+00 985.0
21 TraesCS2A01G013100 chr3D 90.816 588 37 6 1345 1927 547001313 547000738 0.000000e+00 771.0
22 TraesCS2A01G013100 chr3D 88.945 199 16 3 2 196 547002739 547002543 8.380000e-60 241.0
23 TraesCS2A01G013100 chr2B 89.911 337 16 7 2029 2348 2360434 2360769 3.610000e-113 418.0
24 TraesCS2A01G013100 chr2B 83.389 301 40 3 1637 1928 381559501 381559800 1.070000e-68 270.0
25 TraesCS2A01G013100 chr2B 83.654 104 7 5 2080 2177 2489513 2489414 3.210000e-14 89.8
26 TraesCS2A01G013100 chr2B 95.652 46 2 0 1886 1931 681332041 681331996 9.000000e-10 75.0
27 TraesCS2A01G013100 chr5B 81.132 318 46 5 1620 1928 236072551 236072863 2.330000e-60 243.0
28 TraesCS2A01G013100 chr5B 94.000 50 2 1 1883 1932 664745629 664745677 9.000000e-10 75.0
29 TraesCS2A01G013100 chr2D 94.643 112 6 0 2025 2136 7031282 7031171 8.630000e-40 174.0
30 TraesCS2A01G013100 chr2D 76.331 338 22 30 2037 2343 7101319 7101629 6.810000e-26 128.0
31 TraesCS2A01G013100 chr2D 81.944 144 7 11 2149 2289 7031129 7031002 1.150000e-18 104.0
32 TraesCS2A01G013100 chr7D 95.833 48 1 1 1884 1931 562414952 562414998 2.500000e-10 76.8
33 TraesCS2A01G013100 chr7D 95.455 44 1 1 1888 1931 565642994 565643036 4.190000e-08 69.4
34 TraesCS2A01G013100 chr1A 95.652 46 2 0 1885 1930 257643755 257643800 9.000000e-10 75.0
35 TraesCS2A01G013100 chr4D 95.652 46 1 1 1883 1928 302934071 302934027 3.240000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G013100 chr2A 5289767 5292114 2347 True 1727.500000 3092 100.000000 1 2348 2 chr2A.!!$R1 2347
1 TraesCS2A01G013100 chr3B 724186289 724187632 1343 True 822.000000 1208 89.387000 675 1929 2 chr3B.!!$R1 1254
2 TraesCS2A01G013100 chr3A 683547807 683549668 1861 True 620.333333 952 91.899000 2 1883 3 chr3A.!!$R1 1881
3 TraesCS2A01G013100 chr3A 24198873 24201620 2747 False 587.333333 1131 89.321333 1 1929 3 chr3A.!!$F1 1928
4 TraesCS2A01G013100 chr3A 683680744 683683967 3223 True 464.000000 809 91.555500 1 1929 4 chr3A.!!$R2 1928
5 TraesCS2A01G013100 chr4B 604887662 604889282 1620 False 419.750000 1000 90.715000 1 1929 4 chr4B.!!$F2 1928
6 TraesCS2A01G013100 chr3D 547000738 547002739 2001 True 665.666667 985 90.643000 2 1927 3 chr3D.!!$R1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 1.399089 ACGACCCTTTTTGTGTTCACG 59.601 47.619 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 4640 0.252284 AACACCTCCACCTCCGAGAT 60.252 55.0 0.0 0.0 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.399089 ACGACCCTTTTTGTGTTCACG 59.601 47.619 0.00 0.00 0.00 4.35
100 104 3.697542 TCGTGCTGGCATAAGTACTTCTA 59.302 43.478 12.39 0.00 31.29 2.10
161 165 4.929819 ATTTGTTTTGAACGTTAGGGCT 57.070 36.364 0.00 0.00 0.00 5.19
1129 2979 7.877003 ACACATCTCTAGTTCATACTAATCCG 58.123 38.462 0.00 0.00 36.46 4.18
1194 3045 4.562082 CAGAAGAGATGAGATCTGATGGC 58.438 47.826 0.00 0.00 40.38 4.40
1226 3077 2.204463 TGATAGCCAAACCTGGGATGA 58.796 47.619 0.00 0.00 43.74 2.92
1355 3206 6.183361 ACTGCTCTACCAATTTAGGCATATGA 60.183 38.462 6.97 0.00 30.06 2.15
1366 3247 6.558771 TTTAGGCATATGATCATTTCGTGG 57.441 37.500 14.65 0.00 0.00 4.94
1368 3249 4.067896 AGGCATATGATCATTTCGTGGAC 58.932 43.478 14.65 0.00 0.00 4.02
1374 3255 0.806102 ATCATTTCGTGGACGCTCGG 60.806 55.000 0.00 0.00 39.60 4.63
1429 3376 6.599638 ACAACATAAGTAAATCAAGAGGCTCC 59.400 38.462 11.71 0.00 0.00 4.70
1516 3468 6.925165 CCCGCTTTTGCTTGATTATGATTAAT 59.075 34.615 0.00 0.00 44.80 1.40
1550 3567 4.024809 GCAGCCATCGTCTATTAGTTTTCC 60.025 45.833 0.00 0.00 0.00 3.13
1553 3570 6.929049 CAGCCATCGTCTATTAGTTTTCCATA 59.071 38.462 0.00 0.00 0.00 2.74
1788 4353 2.248280 TTTTGTTACAGGAGCAGCGA 57.752 45.000 0.00 0.00 0.00 4.93
1940 4547 8.480643 AATGTATCTAAATATGCGGCTAAGAC 57.519 34.615 0.00 0.00 0.00 3.01
1941 4548 7.228314 TGTATCTAAATATGCGGCTAAGACT 57.772 36.000 0.00 0.00 0.00 3.24
1942 4549 7.090808 TGTATCTAAATATGCGGCTAAGACTG 58.909 38.462 0.00 0.00 0.00 3.51
1943 4550 4.883083 TCTAAATATGCGGCTAAGACTGG 58.117 43.478 0.00 0.00 0.00 4.00
1944 4551 3.838244 AAATATGCGGCTAAGACTGGA 57.162 42.857 0.00 0.00 0.00 3.86
1945 4552 4.357918 AAATATGCGGCTAAGACTGGAT 57.642 40.909 0.00 0.00 0.00 3.41
1946 4553 2.820059 TATGCGGCTAAGACTGGATG 57.180 50.000 0.00 0.00 0.00 3.51
1947 4554 0.107456 ATGCGGCTAAGACTGGATGG 59.893 55.000 0.00 0.00 0.00 3.51
1948 4555 1.264749 TGCGGCTAAGACTGGATGGT 61.265 55.000 0.00 0.00 0.00 3.55
1949 4556 0.750850 GCGGCTAAGACTGGATGGTA 59.249 55.000 0.00 0.00 0.00 3.25
1950 4557 1.344763 GCGGCTAAGACTGGATGGTAT 59.655 52.381 0.00 0.00 0.00 2.73
1951 4558 2.610727 GCGGCTAAGACTGGATGGTATC 60.611 54.545 0.00 0.00 0.00 2.24
1963 4570 4.533919 GGATGGTATCCTCTGACATCTG 57.466 50.000 0.00 0.00 46.19 2.90
1964 4571 3.900601 GGATGGTATCCTCTGACATCTGT 59.099 47.826 0.00 0.00 46.19 3.41
1965 4572 4.262377 GGATGGTATCCTCTGACATCTGTG 60.262 50.000 0.00 0.00 46.19 3.66
1966 4573 3.713003 TGGTATCCTCTGACATCTGTGT 58.287 45.455 0.00 0.00 42.49 3.72
1974 4581 2.261671 ACATCTGTGTCCGCGGAC 59.738 61.111 43.88 43.88 44.77 4.79
1975 4582 2.276116 ACATCTGTGTCCGCGGACT 61.276 57.895 46.72 30.80 44.80 3.85
1976 4583 0.963856 ACATCTGTGTCCGCGGACTA 60.964 55.000 46.72 36.04 44.80 2.59
1977 4584 0.172578 CATCTGTGTCCGCGGACTAA 59.827 55.000 46.72 35.59 44.80 2.24
1978 4585 0.892755 ATCTGTGTCCGCGGACTAAA 59.107 50.000 46.72 33.46 44.80 1.85
1979 4586 0.038892 TCTGTGTCCGCGGACTAAAC 60.039 55.000 46.72 38.16 44.80 2.01
1980 4587 1.342082 CTGTGTCCGCGGACTAAACG 61.342 60.000 46.72 30.52 44.80 3.60
1985 4592 4.489249 CGCGGACTAAACGGATGT 57.511 55.556 0.00 0.00 0.00 3.06
1986 4593 1.995991 CGCGGACTAAACGGATGTG 59.004 57.895 0.00 0.00 0.00 3.21
1987 4594 1.713830 GCGGACTAAACGGATGTGC 59.286 57.895 0.00 0.00 0.00 4.57
1988 4595 1.995991 CGGACTAAACGGATGTGCG 59.004 57.895 0.00 0.00 38.92 5.34
1989 4596 0.457166 CGGACTAAACGGATGTGCGA 60.457 55.000 0.00 0.00 45.73 5.10
1990 4597 1.278238 GGACTAAACGGATGTGCGAG 58.722 55.000 0.00 0.00 0.00 5.03
1991 4598 1.278238 GACTAAACGGATGTGCGAGG 58.722 55.000 0.00 0.00 0.00 4.63
1992 4599 0.892755 ACTAAACGGATGTGCGAGGA 59.107 50.000 0.00 0.00 0.00 3.71
1993 4600 1.274167 ACTAAACGGATGTGCGAGGAA 59.726 47.619 0.00 0.00 0.00 3.36
1994 4601 2.289195 ACTAAACGGATGTGCGAGGAAA 60.289 45.455 0.00 0.00 0.00 3.13
1995 4602 1.821216 AAACGGATGTGCGAGGAAAT 58.179 45.000 0.00 0.00 0.00 2.17
1996 4603 1.821216 AACGGATGTGCGAGGAAATT 58.179 45.000 0.00 0.00 0.00 1.82
1997 4604 1.821216 ACGGATGTGCGAGGAAATTT 58.179 45.000 0.00 0.00 0.00 1.82
1998 4605 2.980568 ACGGATGTGCGAGGAAATTTA 58.019 42.857 0.00 0.00 0.00 1.40
1999 4606 2.676342 ACGGATGTGCGAGGAAATTTAC 59.324 45.455 0.00 0.00 0.00 2.01
2000 4607 2.031683 CGGATGTGCGAGGAAATTTACC 59.968 50.000 0.00 0.00 0.00 2.85
2001 4608 2.031683 GGATGTGCGAGGAAATTTACCG 59.968 50.000 0.00 1.95 0.00 4.02
2002 4609 1.444836 TGTGCGAGGAAATTTACCGG 58.555 50.000 0.00 0.00 0.00 5.28
2003 4610 1.270947 TGTGCGAGGAAATTTACCGGT 60.271 47.619 13.98 13.98 0.00 5.28
2004 4611 1.395954 GTGCGAGGAAATTTACCGGTC 59.604 52.381 12.40 0.00 0.00 4.79
2005 4612 1.002201 TGCGAGGAAATTTACCGGTCA 59.998 47.619 12.40 0.00 0.00 4.02
2006 4613 1.395954 GCGAGGAAATTTACCGGTCAC 59.604 52.381 12.40 0.00 0.00 3.67
2007 4614 2.933928 GCGAGGAAATTTACCGGTCACT 60.934 50.000 12.40 0.00 0.00 3.41
2008 4615 3.676873 GCGAGGAAATTTACCGGTCACTA 60.677 47.826 12.40 0.00 0.00 2.74
2009 4616 4.690122 CGAGGAAATTTACCGGTCACTAT 58.310 43.478 12.40 0.00 0.00 2.12
2010 4617 5.114081 CGAGGAAATTTACCGGTCACTATT 58.886 41.667 12.40 3.83 0.00 1.73
2011 4618 5.006358 CGAGGAAATTTACCGGTCACTATTG 59.994 44.000 12.40 0.00 0.00 1.90
2012 4619 5.190677 AGGAAATTTACCGGTCACTATTGG 58.809 41.667 12.40 0.00 0.00 3.16
2013 4620 5.045432 AGGAAATTTACCGGTCACTATTGGA 60.045 40.000 12.40 0.00 0.00 3.53
2014 4621 5.296035 GGAAATTTACCGGTCACTATTGGAG 59.704 44.000 12.40 0.00 0.00 3.86
2015 4622 5.687166 AATTTACCGGTCACTATTGGAGA 57.313 39.130 12.40 0.00 0.00 3.71
2016 4623 5.888982 ATTTACCGGTCACTATTGGAGAT 57.111 39.130 12.40 0.00 0.00 2.75
2017 4624 4.665833 TTACCGGTCACTATTGGAGATG 57.334 45.455 12.40 0.00 0.00 2.90
2018 4625 1.139058 ACCGGTCACTATTGGAGATGC 59.861 52.381 0.00 0.00 0.00 3.91
2019 4626 1.541233 CCGGTCACTATTGGAGATGCC 60.541 57.143 0.00 0.00 37.10 4.40
2020 4627 1.541233 CGGTCACTATTGGAGATGCCC 60.541 57.143 0.00 0.00 34.97 5.36
2021 4628 1.771255 GGTCACTATTGGAGATGCCCT 59.229 52.381 0.00 0.00 34.97 5.19
2022 4629 2.173569 GGTCACTATTGGAGATGCCCTT 59.826 50.000 0.00 0.00 34.97 3.95
2023 4630 3.209410 GTCACTATTGGAGATGCCCTTG 58.791 50.000 0.00 0.00 34.97 3.61
2024 4631 3.114606 TCACTATTGGAGATGCCCTTGA 58.885 45.455 0.00 0.00 34.97 3.02
2025 4632 3.118261 TCACTATTGGAGATGCCCTTGAC 60.118 47.826 0.00 0.00 34.97 3.18
2026 4633 2.846206 ACTATTGGAGATGCCCTTGACA 59.154 45.455 0.00 0.00 34.97 3.58
2027 4634 2.134789 ATTGGAGATGCCCTTGACAC 57.865 50.000 0.00 0.00 34.97 3.67
2028 4635 1.067295 TTGGAGATGCCCTTGACACT 58.933 50.000 0.00 0.00 34.97 3.55
2029 4636 0.325933 TGGAGATGCCCTTGACACTG 59.674 55.000 0.00 0.00 34.97 3.66
2030 4637 0.326264 GGAGATGCCCTTGACACTGT 59.674 55.000 0.00 0.00 0.00 3.55
2031 4638 1.555075 GGAGATGCCCTTGACACTGTA 59.445 52.381 0.00 0.00 0.00 2.74
2032 4639 2.171448 GGAGATGCCCTTGACACTGTAT 59.829 50.000 0.00 0.00 0.00 2.29
2033 4640 3.388024 GGAGATGCCCTTGACACTGTATA 59.612 47.826 0.00 0.00 0.00 1.47
2034 4641 4.040952 GGAGATGCCCTTGACACTGTATAT 59.959 45.833 0.00 0.00 0.00 0.86
2035 4642 5.220710 AGATGCCCTTGACACTGTATATC 57.779 43.478 0.00 0.00 0.00 1.63
2036 4643 4.904251 AGATGCCCTTGACACTGTATATCT 59.096 41.667 0.00 0.00 0.00 1.98
2037 4644 4.672587 TGCCCTTGACACTGTATATCTC 57.327 45.455 0.00 0.00 0.00 2.75
2038 4645 3.068165 TGCCCTTGACACTGTATATCTCG 59.932 47.826 0.00 0.00 0.00 4.04
2039 4646 3.553096 GCCCTTGACACTGTATATCTCGG 60.553 52.174 0.00 0.00 0.00 4.63
2040 4647 3.889538 CCCTTGACACTGTATATCTCGGA 59.110 47.826 0.00 0.00 0.00 4.55
2041 4648 4.022762 CCCTTGACACTGTATATCTCGGAG 60.023 50.000 0.00 0.00 0.00 4.63
2042 4649 4.022762 CCTTGACACTGTATATCTCGGAGG 60.023 50.000 4.96 0.00 0.00 4.30
2043 4650 4.166246 TGACACTGTATATCTCGGAGGT 57.834 45.455 4.96 0.00 0.00 3.85
2044 4651 3.883489 TGACACTGTATATCTCGGAGGTG 59.117 47.826 4.96 6.03 0.00 4.00
2045 4652 3.223435 ACACTGTATATCTCGGAGGTGG 58.777 50.000 4.96 0.00 0.00 4.61
2046 4653 3.117625 ACACTGTATATCTCGGAGGTGGA 60.118 47.826 4.96 0.00 0.00 4.02
2047 4654 3.504134 CACTGTATATCTCGGAGGTGGAG 59.496 52.174 4.96 0.00 0.00 3.86
2048 4655 3.085533 CTGTATATCTCGGAGGTGGAGG 58.914 54.545 4.96 0.00 32.34 4.30
2049 4656 2.445905 TGTATATCTCGGAGGTGGAGGT 59.554 50.000 4.96 0.00 32.34 3.85
2050 4657 2.002505 ATATCTCGGAGGTGGAGGTG 57.997 55.000 4.96 0.00 32.34 4.00
2051 4658 0.629596 TATCTCGGAGGTGGAGGTGT 59.370 55.000 4.96 0.00 32.34 4.16
2052 4659 0.252284 ATCTCGGAGGTGGAGGTGTT 60.252 55.000 4.96 0.00 32.34 3.32
2053 4660 1.185618 TCTCGGAGGTGGAGGTGTTG 61.186 60.000 4.96 0.00 32.34 3.33
2054 4661 2.172483 CTCGGAGGTGGAGGTGTTGG 62.172 65.000 0.00 0.00 0.00 3.77
2055 4662 2.757077 GGAGGTGGAGGTGTTGGG 59.243 66.667 0.00 0.00 0.00 4.12
2056 4663 1.846124 GGAGGTGGAGGTGTTGGGA 60.846 63.158 0.00 0.00 0.00 4.37
2057 4664 1.679898 GAGGTGGAGGTGTTGGGAG 59.320 63.158 0.00 0.00 0.00 4.30
2058 4665 2.034221 GGTGGAGGTGTTGGGAGC 59.966 66.667 0.00 0.00 0.00 4.70
2059 4666 2.829384 GGTGGAGGTGTTGGGAGCA 61.829 63.158 0.00 0.00 0.00 4.26
2060 4667 1.150536 GTGGAGGTGTTGGGAGCAA 59.849 57.895 0.00 0.00 0.00 3.91
2061 4668 0.251341 GTGGAGGTGTTGGGAGCAAT 60.251 55.000 0.00 0.00 0.00 3.56
2062 4669 0.251297 TGGAGGTGTTGGGAGCAATG 60.251 55.000 0.00 0.00 0.00 2.82
2063 4670 0.038166 GGAGGTGTTGGGAGCAATGA 59.962 55.000 0.00 0.00 0.00 2.57
2064 4671 1.547675 GGAGGTGTTGGGAGCAATGAA 60.548 52.381 0.00 0.00 0.00 2.57
2065 4672 1.815003 GAGGTGTTGGGAGCAATGAAG 59.185 52.381 0.00 0.00 0.00 3.02
2066 4673 0.890683 GGTGTTGGGAGCAATGAAGG 59.109 55.000 0.00 0.00 0.00 3.46
2067 4674 0.244721 GTGTTGGGAGCAATGAAGGC 59.755 55.000 0.00 0.00 0.00 4.35
2068 4675 1.243342 TGTTGGGAGCAATGAAGGCG 61.243 55.000 0.00 0.00 36.08 5.52
2069 4676 1.678635 TTGGGAGCAATGAAGGCGG 60.679 57.895 0.00 0.00 36.08 6.13
2070 4677 3.521796 GGGAGCAATGAAGGCGGC 61.522 66.667 0.00 0.00 36.08 6.53
2071 4678 2.751436 GGAGCAATGAAGGCGGCA 60.751 61.111 13.08 0.00 36.08 5.69
2072 4679 2.342650 GGAGCAATGAAGGCGGCAA 61.343 57.895 13.08 0.00 36.08 4.52
2073 4680 1.153958 GAGCAATGAAGGCGGCAAC 60.154 57.895 13.08 5.00 36.08 4.17
2074 4681 2.125952 GCAATGAAGGCGGCAACC 60.126 61.111 13.08 0.00 0.00 3.77
2086 4693 3.741476 GCAACCGGCAAGCAGGAG 61.741 66.667 17.99 10.45 43.97 3.69
2087 4694 2.032528 CAACCGGCAAGCAGGAGA 59.967 61.111 17.99 0.00 35.27 3.71
2088 4695 1.377725 CAACCGGCAAGCAGGAGAT 60.378 57.895 17.99 1.18 35.27 2.75
2089 4696 1.377725 AACCGGCAAGCAGGAGATG 60.378 57.895 17.99 0.00 35.27 2.90
2090 4697 2.515523 CCGGCAAGCAGGAGATGG 60.516 66.667 5.22 0.00 32.98 3.51
2091 4698 2.515523 CGGCAAGCAGGAGATGGG 60.516 66.667 0.00 0.00 0.00 4.00
2092 4699 2.679716 GGCAAGCAGGAGATGGGT 59.320 61.111 0.00 0.00 0.00 4.51
2093 4700 1.751927 GGCAAGCAGGAGATGGGTG 60.752 63.158 0.00 0.00 0.00 4.61
2094 4701 1.751927 GCAAGCAGGAGATGGGTGG 60.752 63.158 0.00 0.00 0.00 4.61
2095 4702 1.993653 CAAGCAGGAGATGGGTGGA 59.006 57.895 0.00 0.00 0.00 4.02
2096 4703 0.549950 CAAGCAGGAGATGGGTGGAT 59.450 55.000 0.00 0.00 0.00 3.41
2097 4704 0.549950 AAGCAGGAGATGGGTGGATG 59.450 55.000 0.00 0.00 0.00 3.51
2098 4705 1.150081 GCAGGAGATGGGTGGATGG 59.850 63.158 0.00 0.00 0.00 3.51
2099 4706 1.348008 GCAGGAGATGGGTGGATGGA 61.348 60.000 0.00 0.00 0.00 3.41
2100 4707 1.442773 CAGGAGATGGGTGGATGGAT 58.557 55.000 0.00 0.00 0.00 3.41
2101 4708 1.350351 CAGGAGATGGGTGGATGGATC 59.650 57.143 0.00 0.00 0.00 3.36
2102 4709 0.322975 GGAGATGGGTGGATGGATCG 59.677 60.000 0.00 0.00 0.00 3.69
2103 4710 0.322975 GAGATGGGTGGATGGATCGG 59.677 60.000 0.00 0.00 0.00 4.18
2104 4711 1.302832 GATGGGTGGATGGATCGGC 60.303 63.158 0.00 0.00 0.00 5.54
2105 4712 1.771746 ATGGGTGGATGGATCGGCT 60.772 57.895 0.00 0.00 0.00 5.52
2106 4713 2.060567 ATGGGTGGATGGATCGGCTG 62.061 60.000 0.00 0.00 0.00 4.85
2107 4714 2.111878 GGTGGATGGATCGGCTGG 59.888 66.667 0.00 0.00 0.00 4.85
2108 4715 2.111878 GTGGATGGATCGGCTGGG 59.888 66.667 0.00 0.00 0.00 4.45
2109 4716 2.366837 TGGATGGATCGGCTGGGT 60.367 61.111 0.00 0.00 0.00 4.51
2110 4717 2.000701 TGGATGGATCGGCTGGGTT 61.001 57.895 0.00 0.00 0.00 4.11
2111 4718 1.227973 GGATGGATCGGCTGGGTTC 60.228 63.158 0.00 0.00 0.00 3.62
2112 4719 1.595382 GATGGATCGGCTGGGTTCG 60.595 63.158 0.00 0.00 0.00 3.95
2113 4720 2.996168 GATGGATCGGCTGGGTTCGG 62.996 65.000 0.00 0.00 0.00 4.30
2114 4721 3.782443 GGATCGGCTGGGTTCGGT 61.782 66.667 0.00 0.00 0.00 4.69
2115 4722 2.511600 GATCGGCTGGGTTCGGTG 60.512 66.667 0.00 0.00 0.00 4.94
2116 4723 4.778143 ATCGGCTGGGTTCGGTGC 62.778 66.667 0.00 0.00 0.00 5.01
2133 4740 2.369870 GCACGCAGCAATAGTACGT 58.630 52.632 0.00 0.00 44.79 3.57
2134 4741 1.552226 GCACGCAGCAATAGTACGTA 58.448 50.000 0.00 0.00 44.79 3.57
2135 4742 1.254570 GCACGCAGCAATAGTACGTAC 59.745 52.381 18.10 18.10 44.79 3.67
2136 4743 2.793933 CACGCAGCAATAGTACGTACT 58.206 47.619 29.62 29.62 40.24 2.73
2137 4744 2.782192 CACGCAGCAATAGTACGTACTC 59.218 50.000 30.53 16.68 37.73 2.59
2138 4745 2.223433 ACGCAGCAATAGTACGTACTCC 60.223 50.000 30.53 17.07 37.73 3.85
2139 4746 2.223409 CGCAGCAATAGTACGTACTCCA 60.223 50.000 30.53 15.76 37.73 3.86
2140 4747 3.732774 CGCAGCAATAGTACGTACTCCAA 60.733 47.826 30.53 15.00 37.73 3.53
2141 4748 4.178540 GCAGCAATAGTACGTACTCCAAA 58.821 43.478 30.53 14.63 37.73 3.28
2142 4749 4.032558 GCAGCAATAGTACGTACTCCAAAC 59.967 45.833 30.53 17.20 37.73 2.93
2143 4750 4.565564 CAGCAATAGTACGTACTCCAAACC 59.434 45.833 30.53 15.16 37.73 3.27
2144 4751 4.221262 AGCAATAGTACGTACTCCAAACCA 59.779 41.667 30.53 12.75 37.73 3.67
2145 4752 4.328169 GCAATAGTACGTACTCCAAACCAC 59.672 45.833 30.53 10.39 37.73 4.16
2146 4753 2.712057 AGTACGTACTCCAAACCACG 57.288 50.000 22.45 0.00 40.15 4.94
2148 4755 3.146066 AGTACGTACTCCAAACCACGTA 58.854 45.455 22.45 2.03 45.04 3.57
2149 4756 2.712057 ACGTACTCCAAACCACGTAG 57.288 50.000 0.00 0.00 45.04 3.51
2150 4757 1.336240 ACGTACTCCAAACCACGTAGC 60.336 52.381 0.00 0.00 45.04 3.58
2151 4758 1.336148 CGTACTCCAAACCACGTAGCA 60.336 52.381 0.00 0.00 0.00 3.49
2152 4759 2.334838 GTACTCCAAACCACGTAGCAG 58.665 52.381 0.00 0.00 0.00 4.24
2153 4760 1.045407 ACTCCAAACCACGTAGCAGA 58.955 50.000 0.00 0.00 0.00 4.26
2154 4761 1.623811 ACTCCAAACCACGTAGCAGAT 59.376 47.619 0.00 0.00 0.00 2.90
2155 4762 2.002586 CTCCAAACCACGTAGCAGATG 58.997 52.381 0.00 0.00 0.00 2.90
2156 4763 0.447801 CCAAACCACGTAGCAGATGC 59.552 55.000 0.00 0.00 42.49 3.91
2157 4764 1.155889 CAAACCACGTAGCAGATGCA 58.844 50.000 7.68 0.00 45.16 3.96
2158 4765 1.739466 CAAACCACGTAGCAGATGCAT 59.261 47.619 0.00 0.00 45.16 3.96
2159 4766 2.935849 CAAACCACGTAGCAGATGCATA 59.064 45.455 7.68 0.00 45.16 3.14
2160 4767 2.515926 ACCACGTAGCAGATGCATAG 57.484 50.000 7.68 0.00 45.16 2.23
2161 4768 1.757118 ACCACGTAGCAGATGCATAGT 59.243 47.619 7.68 0.68 45.16 2.12
2162 4769 2.130395 CCACGTAGCAGATGCATAGTG 58.870 52.381 7.68 12.30 45.16 2.74
2163 4770 2.481969 CCACGTAGCAGATGCATAGTGT 60.482 50.000 18.26 4.81 45.16 3.55
2164 4771 2.537214 CACGTAGCAGATGCATAGTGTG 59.463 50.000 7.68 4.74 45.16 3.82
2165 4772 2.166459 ACGTAGCAGATGCATAGTGTGT 59.834 45.455 7.68 0.00 45.16 3.72
2166 4773 2.537214 CGTAGCAGATGCATAGTGTGTG 59.463 50.000 7.68 0.00 45.16 3.82
2167 4774 2.775911 AGCAGATGCATAGTGTGTGT 57.224 45.000 7.68 0.00 45.16 3.72
2168 4775 2.353323 AGCAGATGCATAGTGTGTGTG 58.647 47.619 7.68 0.00 45.16 3.82
2169 4776 1.399440 GCAGATGCATAGTGTGTGTGG 59.601 52.381 0.00 0.00 41.59 4.17
2170 4777 1.399440 CAGATGCATAGTGTGTGTGGC 59.601 52.381 0.00 0.00 0.00 5.01
2171 4778 0.374758 GATGCATAGTGTGTGTGGCG 59.625 55.000 0.00 0.00 0.00 5.69
2172 4779 0.321564 ATGCATAGTGTGTGTGGCGT 60.322 50.000 0.00 0.00 0.00 5.68
2173 4780 0.533978 TGCATAGTGTGTGTGGCGTT 60.534 50.000 0.00 0.00 0.00 4.84
2174 4781 0.110238 GCATAGTGTGTGTGGCGTTG 60.110 55.000 0.00 0.00 0.00 4.10
2175 4782 1.225855 CATAGTGTGTGTGGCGTTGT 58.774 50.000 0.00 0.00 0.00 3.32
2176 4783 2.409012 CATAGTGTGTGTGGCGTTGTA 58.591 47.619 0.00 0.00 0.00 2.41
2177 4784 1.855513 TAGTGTGTGTGGCGTTGTAC 58.144 50.000 0.00 0.00 0.00 2.90
2178 4785 0.177141 AGTGTGTGTGGCGTTGTACT 59.823 50.000 0.00 0.00 0.00 2.73
2179 4786 0.303493 GTGTGTGTGGCGTTGTACTG 59.697 55.000 0.00 0.00 0.00 2.74
2180 4787 0.108089 TGTGTGTGGCGTTGTACTGT 60.108 50.000 0.00 0.00 0.00 3.55
2181 4788 1.011333 GTGTGTGGCGTTGTACTGTT 58.989 50.000 0.00 0.00 0.00 3.16
2182 4789 1.399089 GTGTGTGGCGTTGTACTGTTT 59.601 47.619 0.00 0.00 0.00 2.83
2183 4790 1.398739 TGTGTGGCGTTGTACTGTTTG 59.601 47.619 0.00 0.00 0.00 2.93
2184 4791 1.666700 GTGTGGCGTTGTACTGTTTGA 59.333 47.619 0.00 0.00 0.00 2.69
2185 4792 1.666700 TGTGGCGTTGTACTGTTTGAC 59.333 47.619 0.00 0.00 0.00 3.18
2186 4793 1.666700 GTGGCGTTGTACTGTTTGACA 59.333 47.619 0.00 0.00 0.00 3.58
2187 4794 2.289547 GTGGCGTTGTACTGTTTGACAT 59.710 45.455 0.00 0.00 0.00 3.06
2188 4795 2.946329 TGGCGTTGTACTGTTTGACATT 59.054 40.909 0.00 0.00 0.00 2.71
2189 4796 3.378742 TGGCGTTGTACTGTTTGACATTT 59.621 39.130 0.00 0.00 0.00 2.32
2190 4797 3.728718 GGCGTTGTACTGTTTGACATTTG 59.271 43.478 0.00 0.00 0.00 2.32
2191 4798 3.179599 GCGTTGTACTGTTTGACATTTGC 59.820 43.478 0.00 0.00 0.00 3.68
2192 4799 4.346970 CGTTGTACTGTTTGACATTTGCA 58.653 39.130 0.00 0.00 0.00 4.08
2193 4800 4.204168 CGTTGTACTGTTTGACATTTGCAC 59.796 41.667 0.00 0.00 0.00 4.57
2194 4801 4.300189 TGTACTGTTTGACATTTGCACC 57.700 40.909 0.00 0.00 0.00 5.01
2195 4802 2.490328 ACTGTTTGACATTTGCACCG 57.510 45.000 0.00 0.00 0.00 4.94
2196 4803 1.066908 ACTGTTTGACATTTGCACCGG 59.933 47.619 0.00 0.00 0.00 5.28
2197 4804 0.249238 TGTTTGACATTTGCACCGGC 60.249 50.000 0.00 0.00 41.68 6.13
2198 4805 0.031994 GTTTGACATTTGCACCGGCT 59.968 50.000 0.00 0.00 41.91 5.52
2199 4806 1.268352 GTTTGACATTTGCACCGGCTA 59.732 47.619 0.00 0.00 41.91 3.93
2200 4807 1.164411 TTGACATTTGCACCGGCTAG 58.836 50.000 0.00 0.00 41.91 3.42
2219 4826 6.952773 GCTAGGTAGCTATGTCTATGCTAT 57.047 41.667 1.35 0.00 45.62 2.97
2221 4828 7.867752 GCTAGGTAGCTATGTCTATGCTATAC 58.132 42.308 1.35 0.00 45.62 1.47
2222 4829 7.717875 GCTAGGTAGCTATGTCTATGCTATACT 59.282 40.741 1.35 0.00 45.62 2.12
2236 4843 3.275400 CTATACTAGCTCGGTGTGCTG 57.725 52.381 0.00 0.00 41.32 4.41
2237 4844 1.475403 ATACTAGCTCGGTGTGCTGT 58.525 50.000 0.00 3.38 41.32 4.40
2238 4845 0.526211 TACTAGCTCGGTGTGCTGTG 59.474 55.000 0.00 0.35 41.32 3.66
2239 4846 2.048222 TAGCTCGGTGTGCTGTGC 60.048 61.111 0.00 0.00 41.32 4.57
2240 4847 3.933722 AGCTCGGTGTGCTGTGCT 61.934 61.111 0.00 0.00 43.55 4.40
2241 4848 2.770132 TAGCTCGGTGTGCTGTGCTG 62.770 60.000 11.71 0.00 46.51 4.41
2242 4849 3.046087 CTCGGTGTGCTGTGCTGG 61.046 66.667 0.00 0.00 0.00 4.85
2243 4850 4.624364 TCGGTGTGCTGTGCTGGG 62.624 66.667 0.00 0.00 0.00 4.45
2249 4856 4.536526 TGCTGTGCTGGGGCCAAA 62.537 61.111 4.39 0.00 37.74 3.28
2250 4857 3.688159 GCTGTGCTGGGGCCAAAG 61.688 66.667 4.39 3.02 37.74 2.77
2251 4858 2.993264 CTGTGCTGGGGCCAAAGG 60.993 66.667 4.39 0.00 37.74 3.11
2262 4869 3.520862 CCAAAGGCGCGCATGGAT 61.521 61.111 33.19 16.73 34.82 3.41
2263 4870 2.278336 CAAAGGCGCGCATGGATG 60.278 61.111 34.42 21.45 0.00 3.51
2264 4871 3.520862 AAAGGCGCGCATGGATGG 61.521 61.111 34.42 0.00 0.00 3.51
2265 4872 3.993614 AAAGGCGCGCATGGATGGA 62.994 57.895 34.42 0.00 0.00 3.41
2266 4873 3.779850 AAGGCGCGCATGGATGGAT 62.780 57.895 34.42 5.55 0.00 3.41
2267 4874 4.034258 GGCGCGCATGGATGGATG 62.034 66.667 34.42 0.00 0.00 3.51
2268 4875 4.034258 GCGCGCATGGATGGATGG 62.034 66.667 29.10 0.00 0.00 3.51
2269 4876 2.281002 CGCGCATGGATGGATGGA 60.281 61.111 8.75 0.00 0.00 3.41
2270 4877 2.610694 CGCGCATGGATGGATGGAC 61.611 63.158 8.75 0.00 0.00 4.02
2271 4878 2.263741 GCGCATGGATGGATGGACC 61.264 63.158 0.30 0.00 39.54 4.46
2272 4879 1.453235 CGCATGGATGGATGGACCT 59.547 57.895 0.00 0.00 39.86 3.85
2273 4880 0.686789 CGCATGGATGGATGGACCTA 59.313 55.000 0.00 0.00 39.86 3.08
2274 4881 1.072173 CGCATGGATGGATGGACCTAA 59.928 52.381 0.00 0.00 39.86 2.69
2275 4882 2.787994 GCATGGATGGATGGACCTAAG 58.212 52.381 0.00 0.00 39.86 2.18
2276 4883 2.787994 CATGGATGGATGGACCTAAGC 58.212 52.381 0.00 0.00 39.86 3.09
2277 4884 2.196742 TGGATGGATGGACCTAAGCT 57.803 50.000 0.00 0.00 39.86 3.74
2278 4885 3.344535 TGGATGGATGGACCTAAGCTA 57.655 47.619 0.00 0.00 39.86 3.32
2279 4886 3.874316 TGGATGGATGGACCTAAGCTAT 58.126 45.455 0.00 0.00 39.86 2.97
2280 4887 5.023514 TGGATGGATGGACCTAAGCTATA 57.976 43.478 0.00 0.00 39.86 1.31
2281 4888 5.026121 TGGATGGATGGACCTAAGCTATAG 58.974 45.833 0.00 0.00 39.86 1.31
2282 4889 4.407296 GGATGGATGGACCTAAGCTATAGG 59.593 50.000 16.08 16.08 40.49 2.57
2292 4899 6.542795 ACCTAAGCTATAGGTAAGGTAGGT 57.457 41.667 20.24 20.24 45.47 3.08
2293 4900 6.313324 ACCTAAGCTATAGGTAAGGTAGGTG 58.687 44.000 23.23 7.33 45.47 4.00
2294 4901 5.715753 CCTAAGCTATAGGTAAGGTAGGTGG 59.284 48.000 15.11 0.00 0.00 4.61
2295 4902 4.828875 AGCTATAGGTAAGGTAGGTGGT 57.171 45.455 1.70 0.00 0.00 4.16
2296 4903 4.481072 AGCTATAGGTAAGGTAGGTGGTG 58.519 47.826 1.70 0.00 0.00 4.17
2297 4904 3.577415 GCTATAGGTAAGGTAGGTGGTGG 59.423 52.174 1.04 0.00 0.00 4.61
2298 4905 2.555732 TAGGTAAGGTAGGTGGTGGG 57.444 55.000 0.00 0.00 0.00 4.61
2299 4906 0.912968 AGGTAAGGTAGGTGGTGGGC 60.913 60.000 0.00 0.00 0.00 5.36
2300 4907 1.202769 GGTAAGGTAGGTGGTGGGCA 61.203 60.000 0.00 0.00 0.00 5.36
2301 4908 0.916809 GTAAGGTAGGTGGTGGGCAT 59.083 55.000 0.00 0.00 0.00 4.40
2302 4909 0.916086 TAAGGTAGGTGGTGGGCATG 59.084 55.000 0.00 0.00 0.00 4.06
2303 4910 1.863155 AAGGTAGGTGGTGGGCATGG 61.863 60.000 0.00 0.00 0.00 3.66
2304 4911 2.305607 GGTAGGTGGTGGGCATGGA 61.306 63.158 0.00 0.00 0.00 3.41
2305 4912 1.224592 GTAGGTGGTGGGCATGGAG 59.775 63.158 0.00 0.00 0.00 3.86
2306 4913 2.679342 TAGGTGGTGGGCATGGAGC 61.679 63.158 0.00 0.00 44.65 4.70
2316 4923 2.195389 GCATGGAGCCATTCTTGCA 58.805 52.632 7.71 0.00 35.97 4.08
2317 4924 0.750850 GCATGGAGCCATTCTTGCAT 59.249 50.000 7.71 0.00 35.97 3.96
2318 4925 1.538204 GCATGGAGCCATTCTTGCATG 60.538 52.381 7.71 2.19 35.97 4.06
2319 4926 1.068588 CATGGAGCCATTCTTGCATGG 59.931 52.381 0.00 0.00 46.04 3.66
2320 4927 0.040058 TGGAGCCATTCTTGCATGGT 59.960 50.000 5.97 0.00 45.17 3.55
2321 4928 0.743097 GGAGCCATTCTTGCATGGTC 59.257 55.000 5.97 2.91 45.17 4.02
2322 4929 0.743097 GAGCCATTCTTGCATGGTCC 59.257 55.000 5.97 0.00 45.17 4.46
2323 4930 0.040058 AGCCATTCTTGCATGGTCCA 59.960 50.000 5.97 0.00 45.17 4.02
2324 4931 1.117150 GCCATTCTTGCATGGTCCAT 58.883 50.000 0.00 0.00 45.17 3.41
2325 4932 1.202486 GCCATTCTTGCATGGTCCATG 60.202 52.381 25.27 25.27 45.17 3.66
2333 4940 3.930400 CATGGTCCATGCATGAACG 57.070 52.632 28.31 11.58 35.02 3.95
2334 4941 0.248743 CATGGTCCATGCATGAACGC 60.249 55.000 28.31 12.44 35.02 4.84
2335 4942 0.394762 ATGGTCCATGCATGAACGCT 60.395 50.000 28.31 5.69 0.00 5.07
2336 4943 1.026182 TGGTCCATGCATGAACGCTC 61.026 55.000 28.31 6.05 0.00 5.03
2337 4944 1.026182 GGTCCATGCATGAACGCTCA 61.026 55.000 28.31 0.00 35.56 4.26
2338 4945 1.019673 GTCCATGCATGAACGCTCAT 58.980 50.000 28.31 0.00 43.40 2.90
2339 4946 1.402968 GTCCATGCATGAACGCTCATT 59.597 47.619 28.31 0.00 40.49 2.57
2340 4947 2.613595 GTCCATGCATGAACGCTCATTA 59.386 45.455 28.31 0.00 40.49 1.90
2341 4948 2.613595 TCCATGCATGAACGCTCATTAC 59.386 45.455 28.31 0.00 40.49 1.89
2342 4949 2.615447 CCATGCATGAACGCTCATTACT 59.385 45.455 28.31 0.00 40.49 2.24
2343 4950 3.065786 CCATGCATGAACGCTCATTACTT 59.934 43.478 28.31 0.00 40.49 2.24
2344 4951 4.277258 CATGCATGAACGCTCATTACTTC 58.723 43.478 22.59 0.00 40.49 3.01
2345 4952 3.333804 TGCATGAACGCTCATTACTTCA 58.666 40.909 0.00 0.00 40.49 3.02
2346 4953 3.940852 TGCATGAACGCTCATTACTTCAT 59.059 39.130 0.00 0.00 40.49 2.57
2347 4954 4.034394 TGCATGAACGCTCATTACTTCATC 59.966 41.667 0.00 0.00 40.49 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.014847 TCTGAAGCGTGAACACAAAAAG 57.985 40.909 5.80 0.00 0.00 2.27
34 35 3.904571 TGCATGTTCAACAATCTGAAGC 58.095 40.909 0.00 0.00 36.01 3.86
70 74 4.881273 ACTTATGCCAGCACGATGAATAAA 59.119 37.500 0.00 0.00 0.00 1.40
71 75 4.450976 ACTTATGCCAGCACGATGAATAA 58.549 39.130 0.00 0.00 0.00 1.40
72 76 4.071961 ACTTATGCCAGCACGATGAATA 57.928 40.909 0.00 0.00 0.00 1.75
78 82 2.496070 AGAAGTACTTATGCCAGCACGA 59.504 45.455 8.42 0.00 0.00 4.35
139 143 5.270893 AGCCCTAACGTTCAAAACAAATT 57.729 34.783 2.82 0.00 0.00 1.82
144 148 4.036567 ACAAAGCCCTAACGTTCAAAAC 57.963 40.909 2.82 0.00 0.00 2.43
958 2808 5.805486 TCAGATATTCTTCCAAACTCGAACG 59.195 40.000 0.00 0.00 0.00 3.95
1149 3000 6.798482 TGCATCCATTAGCAAACAATAAGAG 58.202 36.000 0.00 0.00 37.90 2.85
1194 3045 3.548745 TGGCTATCATGACCTTCACAG 57.451 47.619 0.00 0.00 0.00 3.66
1269 3120 2.769095 GCCTCTGTCATAACCCTCTCTT 59.231 50.000 0.00 0.00 0.00 2.85
1355 3206 0.806102 CCGAGCGTCCACGAAATGAT 60.806 55.000 2.58 0.00 43.02 2.45
1366 3247 2.609183 AATAGCACCGACCGAGCGTC 62.609 60.000 0.00 0.00 38.21 5.19
1368 3249 2.104331 AATAGCACCGACCGAGCG 59.896 61.111 0.00 0.00 0.00 5.03
1374 3255 3.053455 GACTCATAGCAATAGCACCGAC 58.947 50.000 0.00 0.00 45.49 4.79
1419 3366 2.369860 TGCATGTATAGGGAGCCTCTTG 59.630 50.000 0.00 0.00 34.61 3.02
1550 3567 9.891535 GTTCGGTAATTTTCTAACGTTACTATG 57.108 33.333 3.29 0.00 33.62 2.23
1553 3570 7.945033 TGTTCGGTAATTTTCTAACGTTACT 57.055 32.000 3.29 0.00 33.62 2.24
1564 3582 6.031471 GCGGTTGATATTGTTCGGTAATTTT 58.969 36.000 0.00 0.00 0.00 1.82
1572 3590 0.303493 CGGGCGGTTGATATTGTTCG 59.697 55.000 0.00 0.00 0.00 3.95
1618 3636 2.125106 GGCAGGCGAACCGATCTT 60.125 61.111 0.00 0.00 42.76 2.40
1788 4353 1.183549 GATCGCTATACGGGATGGGT 58.816 55.000 6.51 0.00 44.41 4.51
1929 4536 1.264749 ACCATCCAGTCTTAGCCGCA 61.265 55.000 0.00 0.00 0.00 5.69
1930 4537 0.750850 TACCATCCAGTCTTAGCCGC 59.249 55.000 0.00 0.00 0.00 6.53
1931 4538 3.305398 GATACCATCCAGTCTTAGCCG 57.695 52.381 0.00 0.00 0.00 5.52
1942 4549 6.683393 ACACAGATGTCAGAGGATACCATCC 61.683 48.000 0.00 0.00 42.06 3.51
1943 4550 4.343526 ACACAGATGTCAGAGGATACCATC 59.656 45.833 0.00 0.00 31.55 3.51
1944 4551 4.293494 ACACAGATGTCAGAGGATACCAT 58.707 43.478 0.00 0.00 31.55 3.55
1945 4552 3.713003 ACACAGATGTCAGAGGATACCA 58.287 45.455 0.00 0.00 31.55 3.25
1957 4564 2.261671 GTCCGCGGACACAGATGT 59.738 61.111 44.88 0.00 44.02 3.06
1967 4574 1.153706 ACATCCGTTTAGTCCGCGG 60.154 57.895 22.12 22.12 46.12 6.46
1968 4575 1.995991 CACATCCGTTTAGTCCGCG 59.004 57.895 0.00 0.00 0.00 6.46
1969 4576 1.713830 GCACATCCGTTTAGTCCGC 59.286 57.895 0.00 0.00 0.00 5.54
1970 4577 0.457166 TCGCACATCCGTTTAGTCCG 60.457 55.000 0.00 0.00 0.00 4.79
1971 4578 1.278238 CTCGCACATCCGTTTAGTCC 58.722 55.000 0.00 0.00 0.00 3.85
1972 4579 1.135199 TCCTCGCACATCCGTTTAGTC 60.135 52.381 0.00 0.00 0.00 2.59
1973 4580 0.892755 TCCTCGCACATCCGTTTAGT 59.107 50.000 0.00 0.00 0.00 2.24
1974 4581 2.004583 TTCCTCGCACATCCGTTTAG 57.995 50.000 0.00 0.00 0.00 1.85
1975 4582 2.459060 TTTCCTCGCACATCCGTTTA 57.541 45.000 0.00 0.00 0.00 2.01
1976 4583 1.821216 ATTTCCTCGCACATCCGTTT 58.179 45.000 0.00 0.00 0.00 3.60
1977 4584 1.821216 AATTTCCTCGCACATCCGTT 58.179 45.000 0.00 0.00 0.00 4.44
1978 4585 1.821216 AAATTTCCTCGCACATCCGT 58.179 45.000 0.00 0.00 0.00 4.69
1979 4586 2.031683 GGTAAATTTCCTCGCACATCCG 59.968 50.000 0.00 0.00 0.00 4.18
1980 4587 2.031683 CGGTAAATTTCCTCGCACATCC 59.968 50.000 0.00 0.00 0.00 3.51
1981 4588 2.031683 CCGGTAAATTTCCTCGCACATC 59.968 50.000 0.00 0.00 0.00 3.06
1982 4589 2.014128 CCGGTAAATTTCCTCGCACAT 58.986 47.619 0.00 0.00 0.00 3.21
1983 4590 1.270947 ACCGGTAAATTTCCTCGCACA 60.271 47.619 4.49 0.00 0.00 4.57
1984 4591 1.395954 GACCGGTAAATTTCCTCGCAC 59.604 52.381 7.34 0.00 0.00 5.34
1985 4592 1.002201 TGACCGGTAAATTTCCTCGCA 59.998 47.619 7.34 0.00 0.00 5.10
1986 4593 1.395954 GTGACCGGTAAATTTCCTCGC 59.604 52.381 7.34 0.00 0.00 5.03
1987 4594 2.968675 AGTGACCGGTAAATTTCCTCG 58.031 47.619 7.34 0.00 0.00 4.63
1988 4595 5.296035 CCAATAGTGACCGGTAAATTTCCTC 59.704 44.000 7.34 0.00 0.00 3.71
1989 4596 5.045432 TCCAATAGTGACCGGTAAATTTCCT 60.045 40.000 7.34 0.00 0.00 3.36
1990 4597 5.187687 TCCAATAGTGACCGGTAAATTTCC 58.812 41.667 7.34 0.00 0.00 3.13
1991 4598 6.110707 TCTCCAATAGTGACCGGTAAATTTC 58.889 40.000 7.34 0.00 0.00 2.17
1992 4599 6.057321 TCTCCAATAGTGACCGGTAAATTT 57.943 37.500 7.34 0.00 0.00 1.82
1993 4600 5.687166 TCTCCAATAGTGACCGGTAAATT 57.313 39.130 7.34 1.89 0.00 1.82
1994 4601 5.611374 CATCTCCAATAGTGACCGGTAAAT 58.389 41.667 7.34 0.20 0.00 1.40
1995 4602 4.682320 GCATCTCCAATAGTGACCGGTAAA 60.682 45.833 7.34 0.00 0.00 2.01
1996 4603 3.181469 GCATCTCCAATAGTGACCGGTAA 60.181 47.826 7.34 0.00 0.00 2.85
1997 4604 2.364324 GCATCTCCAATAGTGACCGGTA 59.636 50.000 7.34 0.00 0.00 4.02
1998 4605 1.139058 GCATCTCCAATAGTGACCGGT 59.861 52.381 6.92 6.92 0.00 5.28
1999 4606 1.541233 GGCATCTCCAATAGTGACCGG 60.541 57.143 0.00 0.00 34.01 5.28
2000 4607 1.541233 GGGCATCTCCAATAGTGACCG 60.541 57.143 0.00 0.00 36.21 4.79
2001 4608 1.771255 AGGGCATCTCCAATAGTGACC 59.229 52.381 0.00 0.00 35.66 4.02
2002 4609 3.118261 TCAAGGGCATCTCCAATAGTGAC 60.118 47.826 0.00 0.00 36.21 3.67
2003 4610 3.114606 TCAAGGGCATCTCCAATAGTGA 58.885 45.455 0.00 0.00 36.21 3.41
2004 4611 3.209410 GTCAAGGGCATCTCCAATAGTG 58.791 50.000 0.00 0.00 36.21 2.74
2005 4612 2.846206 TGTCAAGGGCATCTCCAATAGT 59.154 45.455 0.00 0.00 36.21 2.12
2006 4613 3.118112 AGTGTCAAGGGCATCTCCAATAG 60.118 47.826 0.00 0.00 36.21 1.73
2007 4614 2.846206 AGTGTCAAGGGCATCTCCAATA 59.154 45.455 0.00 0.00 36.21 1.90
2008 4615 1.637553 AGTGTCAAGGGCATCTCCAAT 59.362 47.619 0.00 0.00 36.21 3.16
2009 4616 1.067295 AGTGTCAAGGGCATCTCCAA 58.933 50.000 0.00 0.00 36.21 3.53
2010 4617 0.325933 CAGTGTCAAGGGCATCTCCA 59.674 55.000 0.00 0.00 36.21 3.86
2011 4618 0.326264 ACAGTGTCAAGGGCATCTCC 59.674 55.000 0.00 0.00 0.00 3.71
2012 4619 3.550437 ATACAGTGTCAAGGGCATCTC 57.450 47.619 0.00 0.00 0.00 2.75
2013 4620 4.904251 AGATATACAGTGTCAAGGGCATCT 59.096 41.667 0.00 0.00 0.00 2.90
2014 4621 5.220710 AGATATACAGTGTCAAGGGCATC 57.779 43.478 0.00 0.00 0.00 3.91
2015 4622 4.262207 CGAGATATACAGTGTCAAGGGCAT 60.262 45.833 0.00 0.00 0.00 4.40
2016 4623 3.068165 CGAGATATACAGTGTCAAGGGCA 59.932 47.826 0.00 0.00 0.00 5.36
2017 4624 3.553096 CCGAGATATACAGTGTCAAGGGC 60.553 52.174 0.00 0.00 0.00 5.19
2018 4625 3.889538 TCCGAGATATACAGTGTCAAGGG 59.110 47.826 0.00 0.00 0.00 3.95
2019 4626 4.022762 CCTCCGAGATATACAGTGTCAAGG 60.023 50.000 0.00 0.00 0.00 3.61
2020 4627 4.580995 ACCTCCGAGATATACAGTGTCAAG 59.419 45.833 0.00 0.00 0.00 3.02
2021 4628 4.338400 CACCTCCGAGATATACAGTGTCAA 59.662 45.833 0.00 0.00 0.00 3.18
2022 4629 3.883489 CACCTCCGAGATATACAGTGTCA 59.117 47.826 0.00 0.00 0.00 3.58
2023 4630 3.253677 CCACCTCCGAGATATACAGTGTC 59.746 52.174 0.00 0.00 0.00 3.67
2024 4631 3.117625 TCCACCTCCGAGATATACAGTGT 60.118 47.826 0.00 0.00 0.00 3.55
2025 4632 3.487372 TCCACCTCCGAGATATACAGTG 58.513 50.000 0.00 0.00 0.00 3.66
2026 4633 3.498841 CCTCCACCTCCGAGATATACAGT 60.499 52.174 0.00 0.00 0.00 3.55
2027 4634 3.085533 CCTCCACCTCCGAGATATACAG 58.914 54.545 0.00 0.00 0.00 2.74
2028 4635 2.445905 ACCTCCACCTCCGAGATATACA 59.554 50.000 0.00 0.00 0.00 2.29
2029 4636 2.820787 CACCTCCACCTCCGAGATATAC 59.179 54.545 0.00 0.00 0.00 1.47
2030 4637 2.445905 ACACCTCCACCTCCGAGATATA 59.554 50.000 0.00 0.00 0.00 0.86
2031 4638 1.218196 ACACCTCCACCTCCGAGATAT 59.782 52.381 0.00 0.00 0.00 1.63
2032 4639 0.629596 ACACCTCCACCTCCGAGATA 59.370 55.000 0.00 0.00 0.00 1.98
2033 4640 0.252284 AACACCTCCACCTCCGAGAT 60.252 55.000 0.00 0.00 0.00 2.75
2034 4641 1.155390 AACACCTCCACCTCCGAGA 59.845 57.895 0.00 0.00 0.00 4.04
2035 4642 1.293498 CAACACCTCCACCTCCGAG 59.707 63.158 0.00 0.00 0.00 4.63
2036 4643 2.214216 CCAACACCTCCACCTCCGA 61.214 63.158 0.00 0.00 0.00 4.55
2037 4644 2.347490 CCAACACCTCCACCTCCG 59.653 66.667 0.00 0.00 0.00 4.63
2038 4645 1.842381 CTCCCAACACCTCCACCTCC 61.842 65.000 0.00 0.00 0.00 4.30
2039 4646 1.679898 CTCCCAACACCTCCACCTC 59.320 63.158 0.00 0.00 0.00 3.85
2040 4647 2.529744 GCTCCCAACACCTCCACCT 61.530 63.158 0.00 0.00 0.00 4.00
2041 4648 2.034221 GCTCCCAACACCTCCACC 59.966 66.667 0.00 0.00 0.00 4.61
2042 4649 0.251341 ATTGCTCCCAACACCTCCAC 60.251 55.000 0.00 0.00 32.95 4.02
2043 4650 0.251297 CATTGCTCCCAACACCTCCA 60.251 55.000 0.00 0.00 32.95 3.86
2044 4651 0.038166 TCATTGCTCCCAACACCTCC 59.962 55.000 0.00 0.00 32.95 4.30
2045 4652 1.815003 CTTCATTGCTCCCAACACCTC 59.185 52.381 0.00 0.00 32.95 3.85
2046 4653 1.548582 CCTTCATTGCTCCCAACACCT 60.549 52.381 0.00 0.00 32.95 4.00
2047 4654 0.890683 CCTTCATTGCTCCCAACACC 59.109 55.000 0.00 0.00 32.95 4.16
2048 4655 0.244721 GCCTTCATTGCTCCCAACAC 59.755 55.000 0.00 0.00 32.95 3.32
2049 4656 1.243342 CGCCTTCATTGCTCCCAACA 61.243 55.000 0.00 0.00 32.95 3.33
2050 4657 1.508088 CGCCTTCATTGCTCCCAAC 59.492 57.895 0.00 0.00 32.95 3.77
2051 4658 1.678635 CCGCCTTCATTGCTCCCAA 60.679 57.895 0.00 0.00 35.01 4.12
2052 4659 2.045045 CCGCCTTCATTGCTCCCA 60.045 61.111 0.00 0.00 0.00 4.37
2053 4660 3.521796 GCCGCCTTCATTGCTCCC 61.522 66.667 0.00 0.00 0.00 4.30
2054 4661 2.342650 TTGCCGCCTTCATTGCTCC 61.343 57.895 0.00 0.00 0.00 4.70
2055 4662 1.153958 GTTGCCGCCTTCATTGCTC 60.154 57.895 0.00 0.00 0.00 4.26
2056 4663 2.639327 GGTTGCCGCCTTCATTGCT 61.639 57.895 0.00 0.00 0.00 3.91
2057 4664 2.125952 GGTTGCCGCCTTCATTGC 60.126 61.111 0.00 0.00 0.00 3.56
2058 4665 2.179018 CGGTTGCCGCCTTCATTG 59.821 61.111 0.00 0.00 41.17 2.82
2059 4666 3.061848 CCGGTTGCCGCCTTCATT 61.062 61.111 1.51 0.00 46.86 2.57
2069 4676 3.741476 CTCCTGCTTGCCGGTTGC 61.741 66.667 1.90 5.88 41.77 4.17
2070 4677 1.377725 ATCTCCTGCTTGCCGGTTG 60.378 57.895 1.90 0.00 0.00 3.77
2071 4678 1.377725 CATCTCCTGCTTGCCGGTT 60.378 57.895 1.90 0.00 0.00 4.44
2072 4679 2.270205 CATCTCCTGCTTGCCGGT 59.730 61.111 1.90 0.00 0.00 5.28
2073 4680 2.515523 CCATCTCCTGCTTGCCGG 60.516 66.667 0.00 0.00 0.00 6.13
2074 4681 2.515523 CCCATCTCCTGCTTGCCG 60.516 66.667 0.00 0.00 0.00 5.69
2075 4682 1.751927 CACCCATCTCCTGCTTGCC 60.752 63.158 0.00 0.00 0.00 4.52
2076 4683 1.751927 CCACCCATCTCCTGCTTGC 60.752 63.158 0.00 0.00 0.00 4.01
2077 4684 0.549950 ATCCACCCATCTCCTGCTTG 59.450 55.000 0.00 0.00 0.00 4.01
2078 4685 0.549950 CATCCACCCATCTCCTGCTT 59.450 55.000 0.00 0.00 0.00 3.91
2079 4686 1.351080 CCATCCACCCATCTCCTGCT 61.351 60.000 0.00 0.00 0.00 4.24
2080 4687 1.150081 CCATCCACCCATCTCCTGC 59.850 63.158 0.00 0.00 0.00 4.85
2081 4688 1.350351 GATCCATCCACCCATCTCCTG 59.650 57.143 0.00 0.00 0.00 3.86
2082 4689 1.739750 GATCCATCCACCCATCTCCT 58.260 55.000 0.00 0.00 0.00 3.69
2083 4690 0.322975 CGATCCATCCACCCATCTCC 59.677 60.000 0.00 0.00 0.00 3.71
2084 4691 0.322975 CCGATCCATCCACCCATCTC 59.677 60.000 0.00 0.00 0.00 2.75
2085 4692 1.772819 GCCGATCCATCCACCCATCT 61.773 60.000 0.00 0.00 0.00 2.90
2086 4693 1.302832 GCCGATCCATCCACCCATC 60.303 63.158 0.00 0.00 0.00 3.51
2087 4694 1.771746 AGCCGATCCATCCACCCAT 60.772 57.895 0.00 0.00 0.00 4.00
2088 4695 2.366837 AGCCGATCCATCCACCCA 60.367 61.111 0.00 0.00 0.00 4.51
2089 4696 2.111878 CAGCCGATCCATCCACCC 59.888 66.667 0.00 0.00 0.00 4.61
2090 4697 2.111878 CCAGCCGATCCATCCACC 59.888 66.667 0.00 0.00 0.00 4.61
2091 4698 2.111878 CCCAGCCGATCCATCCAC 59.888 66.667 0.00 0.00 0.00 4.02
2092 4699 1.983119 GAACCCAGCCGATCCATCCA 61.983 60.000 0.00 0.00 0.00 3.41
2093 4700 1.227973 GAACCCAGCCGATCCATCC 60.228 63.158 0.00 0.00 0.00 3.51
2094 4701 1.595382 CGAACCCAGCCGATCCATC 60.595 63.158 0.00 0.00 0.00 3.51
2095 4702 2.505982 CGAACCCAGCCGATCCAT 59.494 61.111 0.00 0.00 0.00 3.41
2096 4703 3.781307 CCGAACCCAGCCGATCCA 61.781 66.667 0.00 0.00 0.00 3.41
2097 4704 3.782443 ACCGAACCCAGCCGATCC 61.782 66.667 0.00 0.00 0.00 3.36
2098 4705 2.511600 CACCGAACCCAGCCGATC 60.512 66.667 0.00 0.00 0.00 3.69
2099 4706 4.778143 GCACCGAACCCAGCCGAT 62.778 66.667 0.00 0.00 0.00 4.18
2114 4721 5.516360 AGTACGTACTATTGCTGCGTGCA 62.516 47.826 26.36 0.00 41.77 4.57
2115 4722 1.254570 GTACGTACTATTGCTGCGTGC 59.745 52.381 18.47 0.00 43.25 5.34
2116 4723 2.782192 GAGTACGTACTATTGCTGCGTG 59.218 50.000 27.44 0.00 36.50 5.34
2117 4724 2.223433 GGAGTACGTACTATTGCTGCGT 60.223 50.000 27.44 2.20 36.50 5.24
2118 4725 2.223409 TGGAGTACGTACTATTGCTGCG 60.223 50.000 27.44 0.00 36.50 5.18
2119 4726 3.431922 TGGAGTACGTACTATTGCTGC 57.568 47.619 27.44 13.23 36.50 5.25
2120 4727 4.565564 GGTTTGGAGTACGTACTATTGCTG 59.434 45.833 27.44 0.00 36.50 4.41
2121 4728 4.221262 TGGTTTGGAGTACGTACTATTGCT 59.779 41.667 27.44 5.35 36.50 3.91
2122 4729 4.328169 GTGGTTTGGAGTACGTACTATTGC 59.672 45.833 27.44 14.99 36.50 3.56
2123 4730 4.560035 CGTGGTTTGGAGTACGTACTATTG 59.440 45.833 27.44 7.15 36.50 1.90
2124 4731 4.218417 ACGTGGTTTGGAGTACGTACTATT 59.782 41.667 27.44 6.96 46.50 1.73
2125 4732 3.758554 ACGTGGTTTGGAGTACGTACTAT 59.241 43.478 27.44 7.76 46.50 2.12
2126 4733 3.146066 ACGTGGTTTGGAGTACGTACTA 58.854 45.455 27.44 11.15 46.50 1.82
2127 4734 1.956477 ACGTGGTTTGGAGTACGTACT 59.044 47.619 27.71 27.71 46.50 2.73
2128 4735 2.422276 ACGTGGTTTGGAGTACGTAC 57.578 50.000 18.10 18.10 46.50 3.67
2129 4736 2.095263 GCTACGTGGTTTGGAGTACGTA 60.095 50.000 0.00 0.00 46.50 3.57
2131 4738 1.336148 TGCTACGTGGTTTGGAGTACG 60.336 52.381 0.00 0.00 41.86 3.67
2132 4739 2.029649 TCTGCTACGTGGTTTGGAGTAC 60.030 50.000 0.00 0.00 0.00 2.73
2133 4740 2.241160 TCTGCTACGTGGTTTGGAGTA 58.759 47.619 0.00 0.00 0.00 2.59
2134 4741 1.045407 TCTGCTACGTGGTTTGGAGT 58.955 50.000 0.00 0.00 0.00 3.85
2135 4742 2.002586 CATCTGCTACGTGGTTTGGAG 58.997 52.381 0.00 0.00 0.00 3.86
2136 4743 1.943968 GCATCTGCTACGTGGTTTGGA 60.944 52.381 0.00 0.00 38.21 3.53
2137 4744 0.447801 GCATCTGCTACGTGGTTTGG 59.552 55.000 0.00 0.00 38.21 3.28
2138 4745 1.155889 TGCATCTGCTACGTGGTTTG 58.844 50.000 0.00 0.00 42.66 2.93
2139 4746 2.113860 ATGCATCTGCTACGTGGTTT 57.886 45.000 0.00 0.00 42.66 3.27
2140 4747 2.168521 ACTATGCATCTGCTACGTGGTT 59.831 45.455 0.19 0.00 42.66 3.67
2141 4748 1.757118 ACTATGCATCTGCTACGTGGT 59.243 47.619 0.19 0.00 42.66 4.16
2142 4749 2.130395 CACTATGCATCTGCTACGTGG 58.870 52.381 0.19 0.00 42.66 4.94
2143 4750 2.537214 CACACTATGCATCTGCTACGTG 59.463 50.000 0.19 9.48 42.66 4.49
2144 4751 2.166459 ACACACTATGCATCTGCTACGT 59.834 45.455 0.19 0.00 42.66 3.57
2145 4752 2.537214 CACACACTATGCATCTGCTACG 59.463 50.000 0.19 0.00 42.66 3.51
2146 4753 3.308053 CACACACACTATGCATCTGCTAC 59.692 47.826 0.19 0.00 42.66 3.58
2147 4754 3.524541 CACACACACTATGCATCTGCTA 58.475 45.455 0.19 0.00 42.66 3.49
2148 4755 2.353323 CACACACACTATGCATCTGCT 58.647 47.619 0.19 0.00 42.66 4.24
2149 4756 1.399440 CCACACACACTATGCATCTGC 59.601 52.381 0.19 0.00 42.50 4.26
2150 4757 1.399440 GCCACACACACTATGCATCTG 59.601 52.381 0.19 2.18 0.00 2.90
2151 4758 1.742761 GCCACACACACTATGCATCT 58.257 50.000 0.19 0.00 0.00 2.90
2152 4759 0.374758 CGCCACACACACTATGCATC 59.625 55.000 0.19 0.00 0.00 3.91
2153 4760 0.321564 ACGCCACACACACTATGCAT 60.322 50.000 3.79 3.79 0.00 3.96
2154 4761 0.533978 AACGCCACACACACTATGCA 60.534 50.000 0.00 0.00 0.00 3.96
2155 4762 0.110238 CAACGCCACACACACTATGC 60.110 55.000 0.00 0.00 0.00 3.14
2156 4763 1.225855 ACAACGCCACACACACTATG 58.774 50.000 0.00 0.00 0.00 2.23
2157 4764 2.036733 AGTACAACGCCACACACACTAT 59.963 45.455 0.00 0.00 0.00 2.12
2158 4765 1.409790 AGTACAACGCCACACACACTA 59.590 47.619 0.00 0.00 0.00 2.74
2159 4766 0.177141 AGTACAACGCCACACACACT 59.823 50.000 0.00 0.00 0.00 3.55
2160 4767 0.303493 CAGTACAACGCCACACACAC 59.697 55.000 0.00 0.00 0.00 3.82
2161 4768 0.108089 ACAGTACAACGCCACACACA 60.108 50.000 0.00 0.00 0.00 3.72
2162 4769 1.011333 AACAGTACAACGCCACACAC 58.989 50.000 0.00 0.00 0.00 3.82
2163 4770 1.398739 CAAACAGTACAACGCCACACA 59.601 47.619 0.00 0.00 0.00 3.72
2164 4771 1.666700 TCAAACAGTACAACGCCACAC 59.333 47.619 0.00 0.00 0.00 3.82
2165 4772 1.666700 GTCAAACAGTACAACGCCACA 59.333 47.619 0.00 0.00 0.00 4.17
2166 4773 1.666700 TGTCAAACAGTACAACGCCAC 59.333 47.619 0.00 0.00 0.00 5.01
2167 4774 2.025589 TGTCAAACAGTACAACGCCA 57.974 45.000 0.00 0.00 0.00 5.69
2168 4775 3.619233 AATGTCAAACAGTACAACGCC 57.381 42.857 0.00 0.00 0.00 5.68
2169 4776 3.179599 GCAAATGTCAAACAGTACAACGC 59.820 43.478 0.00 0.00 0.00 4.84
2170 4777 4.204168 GTGCAAATGTCAAACAGTACAACG 59.796 41.667 0.00 0.00 0.00 4.10
2171 4778 4.502645 GGTGCAAATGTCAAACAGTACAAC 59.497 41.667 0.00 0.00 0.00 3.32
2172 4779 4.677584 GGTGCAAATGTCAAACAGTACAA 58.322 39.130 0.00 0.00 0.00 2.41
2173 4780 3.242903 CGGTGCAAATGTCAAACAGTACA 60.243 43.478 0.00 0.00 0.00 2.90
2174 4781 3.296628 CGGTGCAAATGTCAAACAGTAC 58.703 45.455 0.00 0.00 0.00 2.73
2175 4782 2.292016 CCGGTGCAAATGTCAAACAGTA 59.708 45.455 0.00 0.00 0.00 2.74
2176 4783 1.066908 CCGGTGCAAATGTCAAACAGT 59.933 47.619 0.00 0.00 0.00 3.55
2177 4784 1.769733 CCGGTGCAAATGTCAAACAG 58.230 50.000 0.00 0.00 0.00 3.16
2178 4785 0.249238 GCCGGTGCAAATGTCAAACA 60.249 50.000 1.90 0.00 37.47 2.83
2179 4786 0.031994 AGCCGGTGCAAATGTCAAAC 59.968 50.000 1.90 0.00 41.13 2.93
2180 4787 1.539388 CTAGCCGGTGCAAATGTCAAA 59.461 47.619 1.90 0.00 41.13 2.69
2181 4788 1.164411 CTAGCCGGTGCAAATGTCAA 58.836 50.000 1.90 0.00 41.13 3.18
2182 4789 0.676466 CCTAGCCGGTGCAAATGTCA 60.676 55.000 1.90 0.00 41.13 3.58
2183 4790 0.676782 ACCTAGCCGGTGCAAATGTC 60.677 55.000 1.90 0.00 46.80 3.06
2184 4791 1.378762 ACCTAGCCGGTGCAAATGT 59.621 52.632 1.90 0.00 46.80 2.71
2185 4792 4.319133 ACCTAGCCGGTGCAAATG 57.681 55.556 1.90 0.00 46.80 2.32
2195 4802 7.040961 GTATAGCATAGACATAGCTACCTAGCC 60.041 44.444 0.00 0.00 42.94 3.93
2196 4803 7.717875 AGTATAGCATAGACATAGCTACCTAGC 59.282 40.741 0.00 0.00 42.94 3.42
2216 4823 2.619177 ACAGCACACCGAGCTAGTATAG 59.381 50.000 0.00 0.00 41.14 1.31
2217 4824 2.357952 CACAGCACACCGAGCTAGTATA 59.642 50.000 0.00 0.00 41.14 1.47
2218 4825 1.135139 CACAGCACACCGAGCTAGTAT 59.865 52.381 0.00 0.00 41.14 2.12
2219 4826 0.526211 CACAGCACACCGAGCTAGTA 59.474 55.000 0.00 0.00 41.14 1.82
2220 4827 1.290324 CACAGCACACCGAGCTAGT 59.710 57.895 0.00 0.00 41.14 2.57
2221 4828 2.097038 GCACAGCACACCGAGCTAG 61.097 63.158 0.00 0.00 41.14 3.42
2222 4829 2.048222 GCACAGCACACCGAGCTA 60.048 61.111 0.00 0.00 41.14 3.32
2223 4830 3.933722 AGCACAGCACACCGAGCT 61.934 61.111 0.00 0.00 44.62 4.09
2224 4831 3.720193 CAGCACAGCACACCGAGC 61.720 66.667 0.00 0.00 0.00 5.03
2225 4832 3.046087 CCAGCACAGCACACCGAG 61.046 66.667 0.00 0.00 0.00 4.63
2226 4833 4.624364 CCCAGCACAGCACACCGA 62.624 66.667 0.00 0.00 0.00 4.69
2232 4839 4.536526 TTTGGCCCCAGCACAGCA 62.537 61.111 0.00 0.00 42.56 4.41
2233 4840 3.688159 CTTTGGCCCCAGCACAGC 61.688 66.667 0.00 0.00 42.56 4.40
2234 4841 2.993264 CCTTTGGCCCCAGCACAG 60.993 66.667 0.00 0.00 42.56 3.66
2245 4852 3.520862 ATCCATGCGCGCCTTTGG 61.521 61.111 30.77 29.53 0.00 3.28
2246 4853 2.278336 CATCCATGCGCGCCTTTG 60.278 61.111 30.77 22.22 0.00 2.77
2247 4854 3.520862 CCATCCATGCGCGCCTTT 61.521 61.111 30.77 10.92 0.00 3.11
2248 4855 3.779850 ATCCATCCATGCGCGCCTT 62.780 57.895 30.77 13.92 0.00 4.35
2249 4856 4.260609 ATCCATCCATGCGCGCCT 62.261 61.111 30.77 17.59 0.00 5.52
2250 4857 4.034258 CATCCATCCATGCGCGCC 62.034 66.667 30.77 11.42 0.00 6.53
2251 4858 4.034258 CCATCCATCCATGCGCGC 62.034 66.667 27.26 27.26 0.00 6.86
2252 4859 2.281002 TCCATCCATCCATGCGCG 60.281 61.111 0.00 0.00 0.00 6.86
2253 4860 2.263741 GGTCCATCCATCCATGCGC 61.264 63.158 0.00 0.00 35.97 6.09
2254 4861 0.686789 TAGGTCCATCCATCCATGCG 59.313 55.000 0.00 0.00 39.02 4.73
2255 4862 2.787994 CTTAGGTCCATCCATCCATGC 58.212 52.381 0.00 0.00 39.02 4.06
2256 4863 2.374504 AGCTTAGGTCCATCCATCCATG 59.625 50.000 0.00 0.00 39.02 3.66
2257 4864 2.711174 AGCTTAGGTCCATCCATCCAT 58.289 47.619 0.00 0.00 39.02 3.41
2258 4865 2.196742 AGCTTAGGTCCATCCATCCA 57.803 50.000 0.00 0.00 39.02 3.41
2259 4866 4.407296 CCTATAGCTTAGGTCCATCCATCC 59.593 50.000 11.66 0.00 39.02 3.51
2260 4867 5.026790 ACCTATAGCTTAGGTCCATCCATC 58.973 45.833 17.07 0.00 44.10 3.51
2261 4868 5.029973 ACCTATAGCTTAGGTCCATCCAT 57.970 43.478 17.07 0.00 44.10 3.41
2262 4869 4.487282 ACCTATAGCTTAGGTCCATCCA 57.513 45.455 17.07 0.00 44.10 3.41
2263 4870 5.422650 CCTTACCTATAGCTTAGGTCCATCC 59.577 48.000 22.86 0.00 44.10 3.51
2264 4871 6.017830 ACCTTACCTATAGCTTAGGTCCATC 58.982 44.000 22.86 0.00 44.10 3.51
2265 4872 5.978746 ACCTTACCTATAGCTTAGGTCCAT 58.021 41.667 22.86 10.69 44.10 3.41
2266 4873 5.414133 ACCTTACCTATAGCTTAGGTCCA 57.586 43.478 22.86 14.19 44.10 4.02
2267 4874 5.951148 CCTACCTTACCTATAGCTTAGGTCC 59.049 48.000 22.86 0.00 44.10 4.46
2268 4875 6.433716 CACCTACCTTACCTATAGCTTAGGTC 59.566 46.154 22.86 0.00 44.10 3.85
2270 4877 5.715753 CCACCTACCTTACCTATAGCTTAGG 59.284 48.000 16.08 16.08 40.49 2.69
2271 4878 6.208994 CACCACCTACCTTACCTATAGCTTAG 59.791 46.154 0.00 0.00 0.00 2.18
2272 4879 6.073314 CACCACCTACCTTACCTATAGCTTA 58.927 44.000 0.00 0.00 0.00 3.09
2273 4880 4.900054 CACCACCTACCTTACCTATAGCTT 59.100 45.833 0.00 0.00 0.00 3.74
2274 4881 4.481072 CACCACCTACCTTACCTATAGCT 58.519 47.826 0.00 0.00 0.00 3.32
2275 4882 3.577415 CCACCACCTACCTTACCTATAGC 59.423 52.174 0.00 0.00 0.00 2.97
2276 4883 4.158015 CCCACCACCTACCTTACCTATAG 58.842 52.174 0.00 0.00 0.00 1.31
2277 4884 3.695128 GCCCACCACCTACCTTACCTATA 60.695 52.174 0.00 0.00 0.00 1.31
2278 4885 2.962916 GCCCACCACCTACCTTACCTAT 60.963 54.545 0.00 0.00 0.00 2.57
2279 4886 1.623279 GCCCACCACCTACCTTACCTA 60.623 57.143 0.00 0.00 0.00 3.08
2280 4887 0.912968 GCCCACCACCTACCTTACCT 60.913 60.000 0.00 0.00 0.00 3.08
2281 4888 1.202769 TGCCCACCACCTACCTTACC 61.203 60.000 0.00 0.00 0.00 2.85
2282 4889 0.916809 ATGCCCACCACCTACCTTAC 59.083 55.000 0.00 0.00 0.00 2.34
2283 4890 0.916086 CATGCCCACCACCTACCTTA 59.084 55.000 0.00 0.00 0.00 2.69
2284 4891 1.691219 CATGCCCACCACCTACCTT 59.309 57.895 0.00 0.00 0.00 3.50
2285 4892 2.308722 CCATGCCCACCACCTACCT 61.309 63.158 0.00 0.00 0.00 3.08
2286 4893 2.270874 CTCCATGCCCACCACCTACC 62.271 65.000 0.00 0.00 0.00 3.18
2287 4894 1.224592 CTCCATGCCCACCACCTAC 59.775 63.158 0.00 0.00 0.00 3.18
2288 4895 2.679342 GCTCCATGCCCACCACCTA 61.679 63.158 0.00 0.00 35.15 3.08
2289 4896 4.052518 GCTCCATGCCCACCACCT 62.053 66.667 0.00 0.00 35.15 4.00
2298 4905 0.750850 ATGCAAGAATGGCTCCATGC 59.249 50.000 1.59 0.00 34.64 4.06
2299 4906 1.068588 CCATGCAAGAATGGCTCCATG 59.931 52.381 1.59 0.00 40.74 3.66
2300 4907 1.410004 CCATGCAAGAATGGCTCCAT 58.590 50.000 0.00 0.00 40.74 3.41
2301 4908 2.890612 CCATGCAAGAATGGCTCCA 58.109 52.632 0.00 0.00 40.74 3.86
2315 4922 0.248743 GCGTTCATGCATGGACCATG 60.249 55.000 28.59 27.39 43.91 3.66
2316 4923 0.394762 AGCGTTCATGCATGGACCAT 60.395 50.000 28.59 16.56 32.50 3.55
2317 4924 1.002257 AGCGTTCATGCATGGACCA 60.002 52.632 28.59 7.12 32.50 4.02
2318 4925 1.026182 TGAGCGTTCATGCATGGACC 61.026 55.000 28.59 21.36 32.50 4.46
2319 4926 1.019673 ATGAGCGTTCATGCATGGAC 58.980 50.000 25.81 25.81 42.41 4.02
2320 4927 1.753930 AATGAGCGTTCATGCATGGA 58.246 45.000 25.97 16.13 43.20 3.41
2321 4928 2.615447 AGTAATGAGCGTTCATGCATGG 59.385 45.455 25.97 11.67 43.20 3.66
2322 4929 3.957671 AGTAATGAGCGTTCATGCATG 57.042 42.857 21.07 21.07 43.20 4.06
2323 4930 3.940852 TGAAGTAATGAGCGTTCATGCAT 59.059 39.130 15.91 5.16 43.20 3.96
2324 4931 3.333804 TGAAGTAATGAGCGTTCATGCA 58.666 40.909 15.91 4.20 43.20 3.96
2325 4932 4.521943 GATGAAGTAATGAGCGTTCATGC 58.478 43.478 15.91 11.51 43.20 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.