Multiple sequence alignment - TraesCS2A01G012200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G012200 chr2A 100.000 8963 0 0 1 8963 4794590 4785628 0.000000e+00 16552.0
1 TraesCS2A01G012200 chr2A 89.081 1154 80 17 5326 6459 4745682 4744555 0.000000e+00 1391.0
2 TraesCS2A01G012200 chr2A 82.753 1322 158 38 3124 4404 4405944 4407236 0.000000e+00 1114.0
3 TraesCS2A01G012200 chr2A 89.336 844 64 19 7053 7888 4840822 4841647 0.000000e+00 1037.0
4 TraesCS2A01G012200 chr2A 88.889 729 67 13 7192 7916 4744015 4743297 0.000000e+00 885.0
5 TraesCS2A01G012200 chr2A 90.722 679 37 11 4932 5601 4838754 4839415 0.000000e+00 881.0
6 TraesCS2A01G012200 chr2A 91.587 630 44 5 5611 6237 4839466 4840089 0.000000e+00 861.0
7 TraesCS2A01G012200 chr2A 91.456 515 44 0 4406 4920 4837975 4838489 0.000000e+00 708.0
8 TraesCS2A01G012200 chr2A 86.275 357 36 9 5927 6283 4356788 4357131 8.500000e-100 375.0
9 TraesCS2A01G012200 chr2A 86.435 317 30 5 6552 6859 4744524 4744212 1.440000e-87 335.0
10 TraesCS2A01G012200 chr2A 85.759 316 33 5 2055 2363 4760592 4760282 3.120000e-84 324.0
11 TraesCS2A01G012200 chr2A 83.861 316 42 4 7192 7501 4408439 4408751 8.800000e-75 292.0
12 TraesCS2A01G012200 chr2A 92.308 156 8 2 6899 7052 4840594 4840747 1.520000e-52 219.0
13 TraesCS2A01G012200 chr2A 74.962 659 67 52 2416 3011 4405159 4405782 7.050000e-51 213.0
14 TraesCS2A01G012200 chr2A 88.889 162 16 1 6887 7046 4744214 4744053 1.970000e-46 198.0
15 TraesCS2A01G012200 chr2A 88.750 80 9 0 6065 6144 4407430 4407509 2.060000e-16 99.0
16 TraesCS2A01G012200 chr2A 95.000 40 2 0 7777 7816 4786659 4786620 7.510000e-06 63.9
17 TraesCS2A01G012200 chr2A 95.000 40 2 0 7932 7971 4786814 4786775 7.510000e-06 63.9
18 TraesCS2A01G012200 chr2B 95.730 3864 116 23 4110 7934 4987035 4990888 0.000000e+00 6176.0
19 TraesCS2A01G012200 chr2B 92.315 2993 155 39 4979 7934 69346856 69343902 0.000000e+00 4183.0
20 TraesCS2A01G012200 chr2B 91.580 2589 140 30 319 2849 4983692 4986260 0.000000e+00 3502.0
21 TraesCS2A01G012200 chr2B 96.891 772 22 2 3283 4052 4986266 4987037 0.000000e+00 1291.0
22 TraesCS2A01G012200 chr2B 86.579 760 82 18 3811 4555 69347760 69347006 0.000000e+00 821.0
23 TraesCS2A01G012200 chr2B 85.655 725 91 9 3810 4523 5367976 5368698 0.000000e+00 750.0
24 TraesCS2A01G012200 chr2B 86.782 348 39 1 4549 4896 5368698 5369038 1.830000e-101 381.0
25 TraesCS2A01G012200 chr2B 88.387 310 30 4 2055 2363 69349062 69348758 1.420000e-97 368.0
26 TraesCS2A01G012200 chr2B 84.899 298 35 6 6133 6420 5369608 5369905 8.800000e-75 292.0
27 TraesCS2A01G012200 chr2B 93.960 149 8 1 3780 3927 5369466 5369614 3.260000e-54 224.0
28 TraesCS2A01G012200 chr2B 91.083 157 14 0 4742 4898 69347009 69346853 7.050000e-51 213.0
29 TraesCS2A01G012200 chr2B 90.099 101 5 3 8653 8749 4991369 4991468 9.450000e-25 126.0
30 TraesCS2A01G012200 chr2B 92.500 40 3 0 7932 7971 4990731 4990770 3.500000e-04 58.4
31 TraesCS2A01G012200 chr2D 97.323 3026 66 6 3726 6740 6428730 6425709 0.000000e+00 5125.0
32 TraesCS2A01G012200 chr2D 92.208 3478 149 53 280 3695 6432147 6428730 0.000000e+00 4809.0
33 TraesCS2A01G012200 chr2D 85.258 2035 184 60 5722 7696 6281752 6279774 0.000000e+00 1989.0
34 TraesCS2A01G012200 chr2D 95.455 1166 36 6 6773 7934 6425708 6424556 0.000000e+00 1844.0
35 TraesCS2A01G012200 chr2D 83.490 1811 171 66 6120 7870 6281384 6279642 0.000000e+00 1570.0
36 TraesCS2A01G012200 chr2D 87.342 711 68 9 4199 4898 6283156 6282457 0.000000e+00 795.0
37 TraesCS2A01G012200 chr2D 84.885 655 47 26 4979 5601 6282460 6281826 1.650000e-171 614.0
38 TraesCS2A01G012200 chr2D 93.893 393 4 3 8587 8963 6422883 6422495 7.800000e-160 575.0
39 TraesCS2A01G012200 chr2D 87.783 442 52 1 5927 6366 5917359 5917800 4.800000e-142 516.0
40 TraesCS2A01G012200 chr2D 88.644 317 10 6 8289 8587 6423229 6422921 6.610000e-96 363.0
41 TraesCS2A01G012200 chr2D 87.829 304 28 6 2064 2363 6283856 6283558 1.850000e-91 348.0
42 TraesCS2A01G012200 chr2D 94.393 107 5 1 8099 8205 6423373 6423268 7.200000e-36 163.0
43 TraesCS2A01G012200 chr2D 95.775 71 3 0 7978 8048 6423695 6423625 2.040000e-21 115.0
44 TraesCS2A01G012200 chr2D 92.500 40 3 0 7932 7971 6424703 6424664 3.500000e-04 58.4
45 TraesCS2A01G012200 chr4A 93.592 1186 53 10 5698 6869 693410890 693409714 0.000000e+00 1748.0
46 TraesCS2A01G012200 chr4A 93.774 1060 46 13 6867 7911 693399357 693398303 0.000000e+00 1574.0
47 TraesCS2A01G012200 chr4B 85.043 468 49 13 5093 5552 580320506 580320052 2.950000e-124 457.0
48 TraesCS2A01G012200 chr4B 85.342 307 32 7 2058 2363 580322252 580321958 1.130000e-78 305.0
49 TraesCS2A01G012200 chr4B 82.875 327 50 2 4303 4623 580321146 580320820 1.140000e-73 289.0
50 TraesCS2A01G012200 chr4B 89.412 85 9 0 2581 2665 580321601 580321517 3.420000e-19 108.0
51 TraesCS2A01G012200 chrUn 84.397 282 39 3 5 285 93711130 93711407 1.150000e-68 272.0
52 TraesCS2A01G012200 chr6A 82.000 250 34 5 6629 6874 3787764 3787522 1.530000e-47 202.0
53 TraesCS2A01G012200 chr7A 84.615 195 28 2 6681 6874 61181374 61181181 9.180000e-45 193.0
54 TraesCS2A01G012200 chr1A 81.200 250 36 5 6629 6874 136147020 136146778 3.300000e-44 191.0
55 TraesCS2A01G012200 chr1A 81.377 247 35 6 6629 6871 192995540 192995779 3.300000e-44 191.0
56 TraesCS2A01G012200 chr3D 87.619 105 12 1 3635 3739 48256007 48255904 4.400000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G012200 chr2A 4785628 4794590 8962 True 16552.00 16552 100.000000 1 8963 1 chr2A.!!$R2 8962
1 TraesCS2A01G012200 chr2A 4837975 4841647 3672 False 741.20 1037 91.081800 4406 7888 5 chr2A.!!$F3 3482
2 TraesCS2A01G012200 chr2A 4743297 4745682 2385 True 702.25 1391 88.323500 5326 7916 4 chr2A.!!$R3 2590
3 TraesCS2A01G012200 chr2A 4405159 4408751 3592 False 429.50 1114 82.581500 2416 7501 4 chr2A.!!$F2 5085
4 TraesCS2A01G012200 chr2B 4983692 4991468 7776 False 2230.68 6176 93.360000 319 8749 5 chr2B.!!$F1 8430
5 TraesCS2A01G012200 chr2B 69343902 69349062 5160 True 1396.25 4183 89.591000 2055 7934 4 chr2B.!!$R1 5879
6 TraesCS2A01G012200 chr2B 5367976 5369905 1929 False 411.75 750 87.824000 3780 6420 4 chr2B.!!$F2 2640
7 TraesCS2A01G012200 chr2D 6422495 6432147 9652 True 1631.55 5125 93.773875 280 8963 8 chr2D.!!$R2 8683
8 TraesCS2A01G012200 chr2D 6279642 6283856 4214 True 1063.20 1989 85.760800 2064 7870 5 chr2D.!!$R1 5806
9 TraesCS2A01G012200 chr4A 693409714 693410890 1176 True 1748.00 1748 93.592000 5698 6869 1 chr4A.!!$R2 1171
10 TraesCS2A01G012200 chr4A 693398303 693399357 1054 True 1574.00 1574 93.774000 6867 7911 1 chr4A.!!$R1 1044
11 TraesCS2A01G012200 chr4B 580320052 580322252 2200 True 289.75 457 85.668000 2058 5552 4 chr4B.!!$R1 3494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.032615 TTTGACACCTGGGTTTGCCT 60.033 50.000 0.00 0.00 34.45 4.75 F
190 191 0.108329 AAACACCTCCTCCGTATGCG 60.108 55.000 0.00 0.00 37.95 4.73 F
269 270 0.323629 TCCCAGGCGTACTTTTCAGG 59.676 55.000 0.00 0.00 0.00 3.86 F
1481 1603 0.257039 CCATCTCAGGGACCCTTTGG 59.743 60.000 11.56 11.92 37.80 3.28 F
1770 1892 0.254747 GTAACCAGCCAGCATACCCA 59.745 55.000 0.00 0.00 0.00 4.51 F
1986 2108 0.322098 CAACCCACACTATTCCGGCA 60.322 55.000 0.00 0.00 0.00 5.69 F
3166 3525 1.269723 ACTCGATGCTTTCTGTCACGA 59.730 47.619 0.00 0.00 0.00 4.35 F
3835 4253 1.901833 TGTGCTCTTGATGCTAGTGGA 59.098 47.619 0.00 0.00 0.00 4.02 F
5455 6294 0.101040 TGTCAAGTTGCTTGTGCTGC 59.899 50.000 8.48 0.00 41.66 5.25 F
5857 6819 1.665679 GATACTGGTGCCATTGTGTCG 59.334 52.381 0.00 0.00 0.00 4.35 F
6309 7339 3.343941 TGCCGTATTTCCTTGCTACTT 57.656 42.857 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1584 0.257039 CCAAAGGGTCCCTGAGATGG 59.743 60.000 12.53 13.88 32.13 3.51 R
1463 1585 0.394899 GCCAAAGGGTCCCTGAGATG 60.395 60.000 12.53 8.62 32.13 2.90 R
1490 1612 0.537371 AAAAGGGCCTTGAGACGGTG 60.537 55.000 21.72 0.00 0.00 4.94 R
3146 3505 1.269723 TCGTGACAGAAAGCATCGAGT 59.730 47.619 0.00 0.00 0.00 4.18 R
3719 4097 0.319728 CAGTCAGCACTAGCACTGGT 59.680 55.000 11.54 0.00 45.49 4.00 R
3720 4098 0.605083 TCAGTCAGCACTAGCACTGG 59.395 55.000 11.54 0.00 42.15 4.00 R
4625 5084 1.135546 CACACAAGAACAACCAACGCA 60.136 47.619 0.00 0.00 0.00 5.24 R
5634 6595 1.341080 CAGGGGGTGCTTTGACAATT 58.659 50.000 0.00 0.00 0.00 2.32 R
6673 7746 3.914312 TCGGCTCTAGAAACTGAAACTG 58.086 45.455 0.00 0.00 0.00 3.16 R
7572 8771 1.065418 CCAATGGTTAAGAGGGCGACT 60.065 52.381 0.00 0.00 0.00 4.18 R
8119 10369 0.168788 GGCACATCGTCACCATGTTG 59.831 55.000 0.00 0.00 31.83 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.044946 GGGCGAGGCAATGAGGTT 60.045 61.111 0.00 0.00 0.00 3.50
18 19 1.223487 GGGCGAGGCAATGAGGTTA 59.777 57.895 0.00 0.00 0.00 2.85
19 20 0.815615 GGGCGAGGCAATGAGGTTAG 60.816 60.000 0.00 0.00 0.00 2.34
20 21 1.440145 GGCGAGGCAATGAGGTTAGC 61.440 60.000 0.00 0.00 0.00 3.09
37 38 2.520458 CCTGGTCCAGGCAACCAA 59.480 61.111 25.31 0.00 45.13 3.67
38 39 1.077265 CCTGGTCCAGGCAACCAAT 59.923 57.895 25.31 0.00 45.13 3.16
39 40 0.331278 CCTGGTCCAGGCAACCAATA 59.669 55.000 25.31 0.00 45.13 1.90
40 41 1.063717 CCTGGTCCAGGCAACCAATAT 60.064 52.381 25.31 0.00 45.13 1.28
41 42 2.624029 CCTGGTCCAGGCAACCAATATT 60.624 50.000 25.31 0.00 45.13 1.28
42 43 3.099141 CTGGTCCAGGCAACCAATATTT 58.901 45.455 11.46 0.00 45.86 1.40
43 44 2.830923 TGGTCCAGGCAACCAATATTTG 59.169 45.455 0.00 0.00 43.72 2.32
44 45 3.096092 GGTCCAGGCAACCAATATTTGA 58.904 45.455 0.00 0.00 36.75 2.69
45 46 3.119137 GGTCCAGGCAACCAATATTTGAC 60.119 47.826 0.00 0.00 36.75 3.18
46 47 3.509575 GTCCAGGCAACCAATATTTGACA 59.490 43.478 0.00 0.00 34.05 3.58
47 48 3.509575 TCCAGGCAACCAATATTTGACAC 59.490 43.478 0.00 0.00 34.05 3.67
48 49 3.368323 CCAGGCAACCAATATTTGACACC 60.368 47.826 0.00 0.00 34.05 4.16
49 50 3.511146 CAGGCAACCAATATTTGACACCT 59.489 43.478 0.00 0.00 34.05 4.00
50 51 3.511146 AGGCAACCAATATTTGACACCTG 59.489 43.478 0.00 0.00 34.05 4.00
51 52 3.368323 GGCAACCAATATTTGACACCTGG 60.368 47.826 0.00 0.00 31.68 4.45
52 53 3.368323 GCAACCAATATTTGACACCTGGG 60.368 47.826 0.00 0.00 0.00 4.45
53 54 3.825908 ACCAATATTTGACACCTGGGT 57.174 42.857 0.00 0.00 0.00 4.51
54 55 4.126520 ACCAATATTTGACACCTGGGTT 57.873 40.909 0.00 0.00 0.00 4.11
55 56 4.488770 ACCAATATTTGACACCTGGGTTT 58.511 39.130 0.00 0.00 0.00 3.27
56 57 4.283212 ACCAATATTTGACACCTGGGTTTG 59.717 41.667 0.00 0.00 0.00 2.93
57 58 4.244862 CAATATTTGACACCTGGGTTTGC 58.755 43.478 0.00 0.00 0.00 3.68
58 59 1.047801 ATTTGACACCTGGGTTTGCC 58.952 50.000 0.00 0.00 0.00 4.52
59 60 0.032615 TTTGACACCTGGGTTTGCCT 60.033 50.000 0.00 0.00 34.45 4.75
60 61 0.754957 TTGACACCTGGGTTTGCCTG 60.755 55.000 0.00 0.00 34.45 4.85
61 62 1.903404 GACACCTGGGTTTGCCTGG 60.903 63.158 0.00 0.00 35.56 4.45
62 63 2.198426 CACCTGGGTTTGCCTGGT 59.802 61.111 0.00 0.00 40.29 4.00
63 64 2.198426 ACCTGGGTTTGCCTGGTG 59.802 61.111 0.00 0.00 39.03 4.17
64 65 3.305516 CCTGGGTTTGCCTGGTGC 61.306 66.667 0.00 0.00 41.77 5.01
73 74 2.670934 GCCTGGTGCACCTGTCTG 60.671 66.667 34.75 21.99 40.77 3.51
74 75 2.033141 CCTGGTGCACCTGTCTGG 59.967 66.667 34.75 23.08 42.93 3.86
75 76 2.033141 CTGGTGCACCTGTCTGGG 59.967 66.667 34.75 13.00 41.11 4.45
76 77 2.772191 TGGTGCACCTGTCTGGGT 60.772 61.111 34.75 0.00 41.11 4.51
87 88 5.296151 ACCTGTCTGGGTGTAATCATATG 57.704 43.478 0.00 0.00 41.11 1.78
88 89 4.721776 ACCTGTCTGGGTGTAATCATATGT 59.278 41.667 1.90 0.00 41.11 2.29
89 90 5.059161 CCTGTCTGGGTGTAATCATATGTG 58.941 45.833 1.90 0.00 0.00 3.21
90 91 4.450976 TGTCTGGGTGTAATCATATGTGC 58.549 43.478 1.90 0.00 0.00 4.57
91 92 4.164030 TGTCTGGGTGTAATCATATGTGCT 59.836 41.667 1.90 0.00 0.00 4.40
92 93 5.365314 TGTCTGGGTGTAATCATATGTGCTA 59.635 40.000 1.90 0.00 0.00 3.49
93 94 6.126911 TGTCTGGGTGTAATCATATGTGCTAA 60.127 38.462 1.90 0.00 0.00 3.09
94 95 6.936900 GTCTGGGTGTAATCATATGTGCTAAT 59.063 38.462 1.90 0.00 0.00 1.73
95 96 7.118390 GTCTGGGTGTAATCATATGTGCTAATC 59.882 40.741 1.90 0.00 0.00 1.75
96 97 6.836242 TGGGTGTAATCATATGTGCTAATCA 58.164 36.000 1.90 0.00 0.00 2.57
97 98 7.460910 TGGGTGTAATCATATGTGCTAATCAT 58.539 34.615 1.90 0.00 0.00 2.45
98 99 7.944000 TGGGTGTAATCATATGTGCTAATCATT 59.056 33.333 1.90 0.00 0.00 2.57
99 100 9.448438 GGGTGTAATCATATGTGCTAATCATTA 57.552 33.333 1.90 0.00 0.00 1.90
102 103 9.166173 TGTAATCATATGTGCTAATCATTAGGC 57.834 33.333 6.55 0.00 33.80 3.93
103 104 9.388506 GTAATCATATGTGCTAATCATTAGGCT 57.611 33.333 6.55 0.00 33.80 4.58
136 137 9.927668 AACAAGGTGGATGAAAATAAAATAGTG 57.072 29.630 0.00 0.00 0.00 2.74
137 138 9.308000 ACAAGGTGGATGAAAATAAAATAGTGA 57.692 29.630 0.00 0.00 0.00 3.41
138 139 9.573133 CAAGGTGGATGAAAATAAAATAGTGAC 57.427 33.333 0.00 0.00 0.00 3.67
139 140 8.877864 AGGTGGATGAAAATAAAATAGTGACA 57.122 30.769 0.00 0.00 0.00 3.58
140 141 9.479549 AGGTGGATGAAAATAAAATAGTGACAT 57.520 29.630 0.00 0.00 0.00 3.06
141 142 9.736023 GGTGGATGAAAATAAAATAGTGACATC 57.264 33.333 0.00 0.00 0.00 3.06
153 154 6.472686 AATAGTGACATCTTAGACTCCACC 57.527 41.667 6.24 0.00 0.00 4.61
154 155 3.779444 AGTGACATCTTAGACTCCACCA 58.221 45.455 6.24 0.00 0.00 4.17
155 156 3.766591 AGTGACATCTTAGACTCCACCAG 59.233 47.826 6.24 0.00 0.00 4.00
156 157 3.099905 TGACATCTTAGACTCCACCAGG 58.900 50.000 0.00 0.00 0.00 4.45
157 158 1.834263 ACATCTTAGACTCCACCAGGC 59.166 52.381 0.00 0.00 33.74 4.85
158 159 1.139853 CATCTTAGACTCCACCAGGCC 59.860 57.143 0.00 0.00 33.74 5.19
159 160 0.116342 TCTTAGACTCCACCAGGCCA 59.884 55.000 5.01 0.00 33.74 5.36
160 161 0.539051 CTTAGACTCCACCAGGCCAG 59.461 60.000 5.01 0.00 33.74 4.85
161 162 0.909610 TTAGACTCCACCAGGCCAGG 60.910 60.000 13.67 13.67 33.74 4.45
162 163 4.416738 GACTCCACCAGGCCAGGC 62.417 72.222 15.37 1.26 33.74 4.85
172 173 2.203625 GGCCAGGCCTCAAACCAA 60.204 61.111 24.99 0.00 46.69 3.67
173 174 1.836604 GGCCAGGCCTCAAACCAAA 60.837 57.895 24.99 0.00 46.69 3.28
174 175 1.367471 GCCAGGCCTCAAACCAAAC 59.633 57.895 0.00 0.00 0.00 2.93
175 176 1.398958 GCCAGGCCTCAAACCAAACA 61.399 55.000 0.00 0.00 0.00 2.83
176 177 0.389025 CCAGGCCTCAAACCAAACAC 59.611 55.000 0.00 0.00 0.00 3.32
177 178 0.389025 CAGGCCTCAAACCAAACACC 59.611 55.000 0.00 0.00 0.00 4.16
178 179 0.261696 AGGCCTCAAACCAAACACCT 59.738 50.000 0.00 0.00 0.00 4.00
179 180 0.673985 GGCCTCAAACCAAACACCTC 59.326 55.000 0.00 0.00 0.00 3.85
180 181 0.673985 GCCTCAAACCAAACACCTCC 59.326 55.000 0.00 0.00 0.00 4.30
181 182 1.754201 GCCTCAAACCAAACACCTCCT 60.754 52.381 0.00 0.00 0.00 3.69
182 183 2.230660 CCTCAAACCAAACACCTCCTC 58.769 52.381 0.00 0.00 0.00 3.71
183 184 2.230660 CTCAAACCAAACACCTCCTCC 58.769 52.381 0.00 0.00 0.00 4.30
184 185 0.951558 CAAACCAAACACCTCCTCCG 59.048 55.000 0.00 0.00 0.00 4.63
185 186 0.549469 AAACCAAACACCTCCTCCGT 59.451 50.000 0.00 0.00 0.00 4.69
186 187 1.426751 AACCAAACACCTCCTCCGTA 58.573 50.000 0.00 0.00 0.00 4.02
187 188 1.652947 ACCAAACACCTCCTCCGTAT 58.347 50.000 0.00 0.00 0.00 3.06
188 189 1.278127 ACCAAACACCTCCTCCGTATG 59.722 52.381 0.00 0.00 0.00 2.39
189 190 1.369625 CAAACACCTCCTCCGTATGC 58.630 55.000 0.00 0.00 0.00 3.14
190 191 0.108329 AAACACCTCCTCCGTATGCG 60.108 55.000 0.00 0.00 37.95 4.73
191 192 2.279517 CACCTCCTCCGTATGCGC 60.280 66.667 0.00 0.00 36.67 6.09
192 193 2.442272 ACCTCCTCCGTATGCGCT 60.442 61.111 9.73 0.00 36.67 5.92
193 194 2.028190 CCTCCTCCGTATGCGCTG 59.972 66.667 9.73 0.00 36.67 5.18
194 195 2.028190 CTCCTCCGTATGCGCTGG 59.972 66.667 9.73 5.52 36.67 4.85
195 196 4.221422 TCCTCCGTATGCGCTGGC 62.221 66.667 9.73 0.00 40.52 4.85
197 198 4.227134 CTCCGTATGCGCTGGCCT 62.227 66.667 9.73 0.00 38.85 5.19
198 199 4.529219 TCCGTATGCGCTGGCCTG 62.529 66.667 9.73 4.26 38.85 4.85
234 235 7.804843 AAAAATCCAAATTCTCATGCACAAA 57.195 28.000 0.00 0.00 0.00 2.83
235 236 7.989416 AAAATCCAAATTCTCATGCACAAAT 57.011 28.000 0.00 0.00 0.00 2.32
236 237 7.605410 AAATCCAAATTCTCATGCACAAATC 57.395 32.000 0.00 0.00 0.00 2.17
237 238 5.725325 TCCAAATTCTCATGCACAAATCA 57.275 34.783 0.00 0.00 0.00 2.57
238 239 5.716094 TCCAAATTCTCATGCACAAATCAG 58.284 37.500 0.00 0.00 0.00 2.90
239 240 5.477637 TCCAAATTCTCATGCACAAATCAGA 59.522 36.000 0.00 0.00 0.00 3.27
240 241 5.575606 CCAAATTCTCATGCACAAATCAGAC 59.424 40.000 0.00 0.00 0.00 3.51
241 242 5.970317 AATTCTCATGCACAAATCAGACA 57.030 34.783 0.00 0.00 0.00 3.41
242 243 4.754372 TTCTCATGCACAAATCAGACAC 57.246 40.909 0.00 0.00 0.00 3.67
243 244 3.076621 TCTCATGCACAAATCAGACACC 58.923 45.455 0.00 0.00 0.00 4.16
244 245 2.815503 CTCATGCACAAATCAGACACCA 59.184 45.455 0.00 0.00 0.00 4.17
245 246 3.220940 TCATGCACAAATCAGACACCAA 58.779 40.909 0.00 0.00 0.00 3.67
246 247 3.635836 TCATGCACAAATCAGACACCAAA 59.364 39.130 0.00 0.00 0.00 3.28
247 248 4.099113 TCATGCACAAATCAGACACCAAAA 59.901 37.500 0.00 0.00 0.00 2.44
248 249 4.462508 TGCACAAATCAGACACCAAAAA 57.537 36.364 0.00 0.00 0.00 1.94
249 250 5.021033 TGCACAAATCAGACACCAAAAAT 57.979 34.783 0.00 0.00 0.00 1.82
250 251 5.426504 TGCACAAATCAGACACCAAAAATT 58.573 33.333 0.00 0.00 0.00 1.82
251 252 5.523188 TGCACAAATCAGACACCAAAAATTC 59.477 36.000 0.00 0.00 0.00 2.17
252 253 5.050159 GCACAAATCAGACACCAAAAATTCC 60.050 40.000 0.00 0.00 0.00 3.01
253 254 5.466393 CACAAATCAGACACCAAAAATTCCC 59.534 40.000 0.00 0.00 0.00 3.97
254 255 5.130145 ACAAATCAGACACCAAAAATTCCCA 59.870 36.000 0.00 0.00 0.00 4.37
255 256 5.473066 AATCAGACACCAAAAATTCCCAG 57.527 39.130 0.00 0.00 0.00 4.45
256 257 3.230134 TCAGACACCAAAAATTCCCAGG 58.770 45.455 0.00 0.00 0.00 4.45
257 258 1.970640 AGACACCAAAAATTCCCAGGC 59.029 47.619 0.00 0.00 0.00 4.85
258 259 0.678950 ACACCAAAAATTCCCAGGCG 59.321 50.000 0.00 0.00 0.00 5.52
259 260 0.678950 CACCAAAAATTCCCAGGCGT 59.321 50.000 0.00 0.00 0.00 5.68
260 261 1.889829 CACCAAAAATTCCCAGGCGTA 59.110 47.619 0.00 0.00 0.00 4.42
261 262 1.890489 ACCAAAAATTCCCAGGCGTAC 59.110 47.619 0.00 0.00 0.00 3.67
262 263 2.167662 CCAAAAATTCCCAGGCGTACT 58.832 47.619 0.00 0.00 0.00 2.73
263 264 2.560981 CCAAAAATTCCCAGGCGTACTT 59.439 45.455 0.00 0.00 0.00 2.24
264 265 3.006430 CCAAAAATTCCCAGGCGTACTTT 59.994 43.478 0.00 0.00 0.00 2.66
265 266 4.502431 CCAAAAATTCCCAGGCGTACTTTT 60.502 41.667 0.00 0.00 0.00 2.27
266 267 4.514781 AAAATTCCCAGGCGTACTTTTC 57.485 40.909 0.00 0.00 0.00 2.29
267 268 2.871096 ATTCCCAGGCGTACTTTTCA 57.129 45.000 0.00 0.00 0.00 2.69
268 269 2.178912 TTCCCAGGCGTACTTTTCAG 57.821 50.000 0.00 0.00 0.00 3.02
269 270 0.323629 TCCCAGGCGTACTTTTCAGG 59.676 55.000 0.00 0.00 0.00 3.86
270 271 0.323629 CCCAGGCGTACTTTTCAGGA 59.676 55.000 0.00 0.00 0.00 3.86
271 272 1.271163 CCCAGGCGTACTTTTCAGGAA 60.271 52.381 0.00 0.00 0.00 3.36
272 273 2.076863 CCAGGCGTACTTTTCAGGAAG 58.923 52.381 0.00 0.00 0.00 3.46
273 274 1.464997 CAGGCGTACTTTTCAGGAAGC 59.535 52.381 0.00 0.00 37.62 3.86
275 276 1.519408 GCGTACTTTTCAGGAAGCCA 58.481 50.000 0.00 0.00 32.35 4.75
276 277 1.877443 GCGTACTTTTCAGGAAGCCAA 59.123 47.619 0.00 0.00 32.35 4.52
277 278 2.350484 GCGTACTTTTCAGGAAGCCAAC 60.350 50.000 0.00 0.00 32.35 3.77
278 279 2.225727 CGTACTTTTCAGGAAGCCAACC 59.774 50.000 0.00 0.00 0.00 3.77
282 283 3.118775 ACTTTTCAGGAAGCCAACCAAAC 60.119 43.478 0.00 0.00 0.00 2.93
287 288 1.007387 GAAGCCAACCAAACTGCCG 60.007 57.895 0.00 0.00 0.00 5.69
289 290 3.910490 GCCAACCAAACTGCCGCA 61.910 61.111 0.00 0.00 0.00 5.69
294 295 1.135689 CAACCAAACTGCCGCATACTC 60.136 52.381 0.00 0.00 0.00 2.59
297 298 1.077716 AAACTGCCGCATACTCCCC 60.078 57.895 0.00 0.00 0.00 4.81
321 322 4.084013 CCGTCTTAAAAGAAGTGTCGCAAT 60.084 41.667 5.20 0.00 36.68 3.56
449 451 2.266279 TCGACTTCCCTCTTTCCCATT 58.734 47.619 0.00 0.00 0.00 3.16
494 507 4.018688 ACCCTAAGCCGACTTTATTTTCCT 60.019 41.667 0.00 0.00 37.33 3.36
502 515 3.916172 CGACTTTATTTTCCTCACGACGA 59.084 43.478 0.00 0.00 0.00 4.20
542 559 0.933097 CTCCATTGAACATCGCGGAG 59.067 55.000 6.13 0.86 34.54 4.63
567 584 2.210116 CCTAACATTGGATCGAACGGG 58.790 52.381 0.00 0.00 0.00 5.28
617 634 5.564882 GCAAGCTGAAACTTTTTGTGTTTTG 59.435 36.000 0.00 0.00 37.70 2.44
632 653 4.809958 TGTGTTTTGAGACGAATTCGGTTA 59.190 37.500 29.79 12.15 44.95 2.85
731 763 4.742201 GTCAGCAAGCCGAGCCGA 62.742 66.667 0.00 0.00 0.00 5.54
732 764 4.441695 TCAGCAAGCCGAGCCGAG 62.442 66.667 0.00 0.00 0.00 4.63
813 846 0.589729 CAAATTCCAATCTCGCCGCG 60.590 55.000 6.39 6.39 0.00 6.46
1272 1328 4.394712 CAGGGTTCCTTCGGCGCT 62.395 66.667 7.64 0.00 0.00 5.92
1449 1571 3.400054 CGACCCCAGGGACCCTTC 61.400 72.222 11.56 4.94 38.96 3.46
1452 1574 4.733725 CCCCAGGGACCCTTCGGA 62.734 72.222 21.15 0.00 37.50 4.55
1468 1590 4.959596 GAGCCGCGCCTCCATCTC 62.960 72.222 5.65 0.00 0.00 2.75
1471 1593 4.598894 CCGCGCCTCCATCTCAGG 62.599 72.222 0.00 0.00 0.00 3.86
1472 1594 4.598894 CGCGCCTCCATCTCAGGG 62.599 72.222 0.00 0.00 0.00 4.45
1473 1595 3.157252 GCGCCTCCATCTCAGGGA 61.157 66.667 0.00 0.00 0.00 4.20
1474 1596 2.818132 CGCCTCCATCTCAGGGAC 59.182 66.667 0.00 0.00 0.00 4.46
1475 1597 2.801631 CGCCTCCATCTCAGGGACC 61.802 68.421 0.00 0.00 0.00 4.46
1476 1598 2.447714 GCCTCCATCTCAGGGACCC 61.448 68.421 0.59 0.59 0.00 4.46
1477 1599 1.316266 CCTCCATCTCAGGGACCCT 59.684 63.158 7.44 7.44 0.00 4.34
1478 1600 0.327000 CCTCCATCTCAGGGACCCTT 60.327 60.000 11.56 0.00 0.00 3.95
1479 1601 1.589414 CTCCATCTCAGGGACCCTTT 58.411 55.000 11.56 0.00 0.00 3.11
1480 1602 1.211457 CTCCATCTCAGGGACCCTTTG 59.789 57.143 11.56 6.76 0.00 2.77
1481 1603 0.257039 CCATCTCAGGGACCCTTTGG 59.743 60.000 11.56 11.92 37.80 3.28
1482 1604 0.394899 CATCTCAGGGACCCTTTGGC 60.395 60.000 11.56 0.00 33.59 4.52
1483 1605 1.915078 ATCTCAGGGACCCTTTGGCG 61.915 60.000 11.56 0.00 33.59 5.69
1484 1606 4.344865 TCAGGGACCCTTTGGCGC 62.345 66.667 11.56 0.00 33.59 6.53
1532 1654 0.823356 GCAGCACCTCCACCTTTTCA 60.823 55.000 0.00 0.00 0.00 2.69
1539 1661 0.771127 CTCCACCTTTTCACCCTCCA 59.229 55.000 0.00 0.00 0.00 3.86
1587 1709 1.078497 CACAGGGAACGCTATGCCA 60.078 57.895 0.00 0.00 32.31 4.92
1590 1712 2.895372 GGGAACGCTATGCCACCG 60.895 66.667 0.00 0.00 0.00 4.94
1593 1715 4.402528 AACGCTATGCCACCGCCA 62.403 61.111 0.00 0.00 0.00 5.69
1656 1778 0.902531 TGCAAGGGTACTACTCTGGC 59.097 55.000 8.40 8.40 46.04 4.85
1726 1848 1.078497 CAGAACATGCCACCGCCTA 60.078 57.895 0.00 0.00 0.00 3.93
1746 1868 3.411517 ATGGGGCCACCTTCCTCG 61.412 66.667 0.20 0.00 41.11 4.63
1767 1889 2.403252 ACAGTAACCAGCCAGCATAC 57.597 50.000 0.00 0.00 0.00 2.39
1770 1892 0.254747 GTAACCAGCCAGCATACCCA 59.745 55.000 0.00 0.00 0.00 4.51
1842 1964 2.035193 GTCTCTGTCAGTGAGTTCTGCA 59.965 50.000 4.85 0.00 35.63 4.41
1893 2015 3.142838 GGGCTACCACGTCCGCTA 61.143 66.667 0.00 0.00 36.50 4.26
1936 2058 1.079323 AGGTTTTGGAGGCATTCCCAT 59.921 47.619 4.24 0.00 46.19 4.00
1986 2108 0.322098 CAACCCACACTATTCCGGCA 60.322 55.000 0.00 0.00 0.00 5.69
2029 2151 2.203750 ATTTGCCCCTTGGTGCCA 59.796 55.556 0.00 0.00 0.00 4.92
2335 2467 2.611751 TGCGTATTGAATGGACCGATTG 59.388 45.455 0.00 0.00 0.00 2.67
2561 2813 7.839705 TGAACTGTAACCTGAGTAAGATATCCT 59.160 37.037 0.00 0.00 0.00 3.24
2576 2852 4.702131 AGATATCCTTTAATCATTGGCGCC 59.298 41.667 22.73 22.73 0.00 6.53
2894 3197 5.372373 TGTTGACCATCACACTAAATGTCA 58.628 37.500 0.00 0.00 40.64 3.58
3083 3419 8.958175 TTAAATAACTGAAATAACTTGGCACG 57.042 30.769 0.00 0.00 0.00 5.34
3162 3521 6.456181 CCAAGAAATACTCGATGCTTTCTGTC 60.456 42.308 13.65 0.00 37.84 3.51
3163 3522 5.724328 AGAAATACTCGATGCTTTCTGTCA 58.276 37.500 12.67 0.00 36.77 3.58
3165 3524 1.702886 ACTCGATGCTTTCTGTCACG 58.297 50.000 0.00 0.00 0.00 4.35
3166 3525 1.269723 ACTCGATGCTTTCTGTCACGA 59.730 47.619 0.00 0.00 0.00 4.35
3167 3526 2.094494 ACTCGATGCTTTCTGTCACGAT 60.094 45.455 0.00 0.00 0.00 3.73
3168 3527 3.128764 ACTCGATGCTTTCTGTCACGATA 59.871 43.478 0.00 0.00 0.00 2.92
3241 3613 9.971922 TGTCCTAACTTAAACTTACACTCTTAC 57.028 33.333 0.00 0.00 0.00 2.34
3630 4007 8.464770 TTTTGACTAATTGCATTGCAGTTATC 57.535 30.769 22.06 19.91 39.33 1.75
3700 4078 8.918202 AATCTTACATTCTGTTTAGGTTGTCA 57.082 30.769 0.00 0.00 0.00 3.58
3701 4079 9.520515 AATCTTACATTCTGTTTAGGTTGTCAT 57.479 29.630 0.00 0.00 0.00 3.06
3702 4080 8.918202 TCTTACATTCTGTTTAGGTTGTCATT 57.082 30.769 0.00 0.00 0.00 2.57
3703 4081 9.349713 TCTTACATTCTGTTTAGGTTGTCATTT 57.650 29.630 0.00 0.00 0.00 2.32
3707 4085 9.295825 ACATTCTGTTTAGGTTGTCATTTATGA 57.704 29.630 0.00 0.00 0.00 2.15
3708 4086 9.778993 CATTCTGTTTAGGTTGTCATTTATGAG 57.221 33.333 0.00 0.00 37.51 2.90
3709 4087 9.739276 ATTCTGTTTAGGTTGTCATTTATGAGA 57.261 29.630 0.00 0.00 37.51 3.27
3710 4088 9.739276 TTCTGTTTAGGTTGTCATTTATGAGAT 57.261 29.630 0.00 0.00 37.51 2.75
3711 4089 9.383519 TCTGTTTAGGTTGTCATTTATGAGATC 57.616 33.333 0.00 0.00 37.51 2.75
3712 4090 9.388506 CTGTTTAGGTTGTCATTTATGAGATCT 57.611 33.333 0.00 0.00 37.51 2.75
3713 4091 9.166173 TGTTTAGGTTGTCATTTATGAGATCTG 57.834 33.333 0.00 0.00 37.51 2.90
3714 4092 9.167311 GTTTAGGTTGTCATTTATGAGATCTGT 57.833 33.333 0.00 0.00 37.51 3.41
3717 4095 8.899427 AGGTTGTCATTTATGAGATCTGTATG 57.101 34.615 0.00 0.00 37.51 2.39
3718 4096 8.489489 AGGTTGTCATTTATGAGATCTGTATGT 58.511 33.333 0.00 0.00 37.51 2.29
3719 4097 9.764363 GGTTGTCATTTATGAGATCTGTATGTA 57.236 33.333 0.00 0.00 37.51 2.29
3721 4099 9.764363 TTGTCATTTATGAGATCTGTATGTACC 57.236 33.333 0.00 0.00 37.51 3.34
3722 4100 8.923270 TGTCATTTATGAGATCTGTATGTACCA 58.077 33.333 0.00 0.00 37.51 3.25
3723 4101 9.416794 GTCATTTATGAGATCTGTATGTACCAG 57.583 37.037 0.00 0.00 37.51 4.00
3724 4102 9.147732 TCATTTATGAGATCTGTATGTACCAGT 57.852 33.333 0.00 0.00 32.11 4.00
3835 4253 1.901833 TGTGCTCTTGATGCTAGTGGA 59.098 47.619 0.00 0.00 0.00 4.02
3836 4254 2.275318 GTGCTCTTGATGCTAGTGGAC 58.725 52.381 0.00 0.00 0.00 4.02
4004 4425 4.171754 GCTCGAGGTACGTTCTACATTTT 58.828 43.478 15.58 0.00 43.13 1.82
4098 4523 9.774742 GCTGTAGGATTTAGTATGTTCTTTTTG 57.225 33.333 0.00 0.00 0.00 2.44
4361 4792 8.030692 ACATACCAAACTTGATTTCATGATGTG 58.969 33.333 0.00 0.00 0.00 3.21
4490 4925 5.808540 TGGTTAATTTGGTCGATTCTAGACG 59.191 40.000 0.00 0.00 39.38 4.18
4492 4927 6.974622 GGTTAATTTGGTCGATTCTAGACGTA 59.025 38.462 0.00 0.00 39.38 3.57
4658 5117 2.171659 TCTTGTGTGCCCTCTGTTACAA 59.828 45.455 0.00 0.00 0.00 2.41
4939 5400 4.640771 AGCTTCCTTAGGTGACAATTCA 57.359 40.909 0.00 0.00 32.15 2.57
5207 6016 5.996513 AGCTGCATGTTTATCATCTTCCTAG 59.003 40.000 1.02 0.00 34.09 3.02
5222 6031 6.426646 TCTTCCTAGATATTTCCTTGCCTC 57.573 41.667 0.00 0.00 0.00 4.70
5419 6258 3.118038 AGACTGTTTACTTCCAAGTGGCA 60.118 43.478 2.01 0.00 40.07 4.92
5453 6292 1.027357 CCTGTCAAGTTGCTTGTGCT 58.973 50.000 8.48 0.00 41.66 4.40
5454 6293 1.268896 CCTGTCAAGTTGCTTGTGCTG 60.269 52.381 8.48 7.18 41.66 4.41
5455 6294 0.101040 TGTCAAGTTGCTTGTGCTGC 59.899 50.000 8.48 0.00 41.66 5.25
5634 6595 6.761714 GGAGAGATCCAAGTCGCTTATTTTTA 59.238 38.462 0.00 0.00 0.00 1.52
5635 6596 7.280205 GGAGAGATCCAAGTCGCTTATTTTTAA 59.720 37.037 0.00 0.00 0.00 1.52
5649 6610 7.518161 GCTTATTTTTAATTGTCAAAGCACCC 58.482 34.615 0.00 0.00 38.33 4.61
5857 6819 1.665679 GATACTGGTGCCATTGTGTCG 59.334 52.381 0.00 0.00 0.00 4.35
6309 7339 3.343941 TGCCGTATTTCCTTGCTACTT 57.656 42.857 0.00 0.00 0.00 2.24
6673 7746 7.607607 ACCCATTTAATTCCTGCTTCAAAATTC 59.392 33.333 0.00 0.00 0.00 2.17
7057 8215 6.958192 AGTCTTGACCTTGGGACTTATACTTA 59.042 38.462 0.00 0.00 35.82 2.24
7058 8216 7.624077 AGTCTTGACCTTGGGACTTATACTTAT 59.376 37.037 0.00 0.00 35.82 1.73
7572 8771 3.497115 TTGCTGTGCCAGTCCCCA 61.497 61.111 4.45 0.00 33.43 4.96
7595 8795 2.040545 TCGCCCTCTTAACCATTGGAAA 59.959 45.455 10.37 2.50 0.00 3.13
7646 8852 0.393537 GCCATCCTGTTAGCAGCAGT 60.394 55.000 0.17 0.00 41.26 4.40
7861 9080 6.972328 TGCAAAGATTGTGTAAACTCTTGTTC 59.028 34.615 0.00 0.00 34.96 3.18
7930 9150 5.882000 TCATGTTTTGGTACTGATCTGGATG 59.118 40.000 4.49 0.00 0.00 3.51
7934 9154 4.508551 TTGGTACTGATCTGGATGCAAT 57.491 40.909 4.49 0.00 0.00 3.56
7935 9155 4.077300 TGGTACTGATCTGGATGCAATC 57.923 45.455 4.49 0.00 44.55 2.67
7936 9156 3.062763 GGTACTGATCTGGATGCAATCG 58.937 50.000 4.49 0.00 46.86 3.34
7937 9157 2.996249 ACTGATCTGGATGCAATCGT 57.004 45.000 4.49 0.00 46.86 3.73
7939 9159 3.614092 ACTGATCTGGATGCAATCGTTT 58.386 40.909 4.49 0.00 46.86 3.60
7940 9160 3.376234 ACTGATCTGGATGCAATCGTTTG 59.624 43.478 4.49 1.73 46.86 2.93
7941 9161 2.684374 TGATCTGGATGCAATCGTTTGG 59.316 45.455 8.24 0.00 46.86 3.28
7943 9163 2.358957 TCTGGATGCAATCGTTTGGAG 58.641 47.619 8.24 0.00 46.86 3.86
7945 9165 2.083774 TGGATGCAATCGTTTGGAGTC 58.916 47.619 8.24 5.36 46.86 3.36
7946 9166 2.290260 TGGATGCAATCGTTTGGAGTCT 60.290 45.455 8.24 0.00 46.86 3.24
7949 9169 3.624326 TGCAATCGTTTGGAGTCTTTG 57.376 42.857 8.24 0.00 33.22 2.77
7950 9170 2.293122 TGCAATCGTTTGGAGTCTTTGG 59.707 45.455 8.24 0.00 33.22 3.28
7952 9172 3.500680 GCAATCGTTTGGAGTCTTTGGTA 59.499 43.478 8.24 0.00 33.22 3.25
7954 9174 3.396260 TCGTTTGGAGTCTTTGGTAGG 57.604 47.619 0.00 0.00 0.00 3.18
7957 9177 2.107726 GTTTGGAGTCTTTGGTAGGGGT 59.892 50.000 0.00 0.00 0.00 4.95
7958 9178 2.127651 TGGAGTCTTTGGTAGGGGTT 57.872 50.000 0.00 0.00 0.00 4.11
7959 9179 2.424793 TGGAGTCTTTGGTAGGGGTTT 58.575 47.619 0.00 0.00 0.00 3.27
7960 9180 2.107552 TGGAGTCTTTGGTAGGGGTTTG 59.892 50.000 0.00 0.00 0.00 2.93
7961 9181 2.107726 GGAGTCTTTGGTAGGGGTTTGT 59.892 50.000 0.00 0.00 0.00 2.83
7963 9183 4.321718 GAGTCTTTGGTAGGGGTTTGTAC 58.678 47.826 0.00 0.00 0.00 2.90
7965 9185 4.070009 GTCTTTGGTAGGGGTTTGTACTG 58.930 47.826 0.00 0.00 0.00 2.74
7966 9186 3.975312 TCTTTGGTAGGGGTTTGTACTGA 59.025 43.478 0.00 0.00 0.00 3.41
7967 9187 4.600111 TCTTTGGTAGGGGTTTGTACTGAT 59.400 41.667 0.00 0.00 0.00 2.90
7968 9188 5.073965 TCTTTGGTAGGGGTTTGTACTGATT 59.926 40.000 0.00 0.00 0.00 2.57
7969 9189 5.327737 TTGGTAGGGGTTTGTACTGATTT 57.672 39.130 0.00 0.00 0.00 2.17
7970 9190 4.658063 TGGTAGGGGTTTGTACTGATTTG 58.342 43.478 0.00 0.00 0.00 2.32
7971 9191 4.014406 GGTAGGGGTTTGTACTGATTTGG 58.986 47.826 0.00 0.00 0.00 3.28
7972 9192 4.263594 GGTAGGGGTTTGTACTGATTTGGA 60.264 45.833 0.00 0.00 0.00 3.53
7973 9193 4.463050 AGGGGTTTGTACTGATTTGGAA 57.537 40.909 0.00 0.00 0.00 3.53
7974 9194 4.407365 AGGGGTTTGTACTGATTTGGAAG 58.593 43.478 0.00 0.00 0.00 3.46
7975 9195 3.056821 GGGGTTTGTACTGATTTGGAAGC 60.057 47.826 0.00 0.00 0.00 3.86
8011 10061 7.054491 AGCAATTGTCCTTTTAATCTTGTGT 57.946 32.000 7.40 0.00 0.00 3.72
8036 10086 4.458989 GCTCATTCAACCTACCACATCAAA 59.541 41.667 0.00 0.00 0.00 2.69
8043 10093 1.463674 CTACCACATCAAAGGCCACC 58.536 55.000 5.01 0.00 0.00 4.61
8075 10176 0.318762 AGCTTGGTGAAGACGAGGAC 59.681 55.000 0.00 0.00 0.00 3.85
8096 10197 0.460284 GTCATGATCGTCCAAGCGGT 60.460 55.000 0.00 0.00 0.00 5.68
8125 10375 2.177531 GCCACGCTGCTCAACATG 59.822 61.111 0.00 0.00 0.00 3.21
8126 10376 2.872557 CCACGCTGCTCAACATGG 59.127 61.111 0.00 0.00 0.00 3.66
8137 10387 1.129251 CTCAACATGGTGACGATGTGC 59.871 52.381 10.05 0.00 34.03 4.57
8205 10455 2.479389 CCACGAAACTCAAGCTGCAAAA 60.479 45.455 1.02 0.00 0.00 2.44
8206 10456 3.178267 CACGAAACTCAAGCTGCAAAAA 58.822 40.909 1.02 0.00 0.00 1.94
8257 10507 5.119588 GGATGCATGTTGAACACTGAAAATG 59.880 40.000 2.46 0.00 0.00 2.32
8258 10508 5.008619 TGCATGTTGAACACTGAAAATGT 57.991 34.783 0.00 0.00 0.00 2.71
8259 10509 4.804665 TGCATGTTGAACACTGAAAATGTG 59.195 37.500 0.00 0.00 40.87 3.21
8260 10510 4.209703 GCATGTTGAACACTGAAAATGTGG 59.790 41.667 0.00 0.00 39.52 4.17
8261 10511 5.350633 CATGTTGAACACTGAAAATGTGGT 58.649 37.500 0.00 0.00 39.52 4.16
8262 10512 5.398603 TGTTGAACACTGAAAATGTGGTT 57.601 34.783 0.00 0.00 39.52 3.67
8263 10513 6.516739 TGTTGAACACTGAAAATGTGGTTA 57.483 33.333 0.00 0.00 39.52 2.85
8264 10514 7.106439 TGTTGAACACTGAAAATGTGGTTAT 57.894 32.000 0.00 0.00 39.52 1.89
8265 10515 7.551585 TGTTGAACACTGAAAATGTGGTTATT 58.448 30.769 0.00 0.00 39.52 1.40
8266 10516 7.490725 TGTTGAACACTGAAAATGTGGTTATTG 59.509 33.333 0.00 0.00 39.52 1.90
8267 10517 5.982516 TGAACACTGAAAATGTGGTTATTGC 59.017 36.000 0.00 0.00 39.52 3.56
8268 10518 5.528043 ACACTGAAAATGTGGTTATTGCA 57.472 34.783 0.00 0.00 39.52 4.08
8269 10519 6.100404 ACACTGAAAATGTGGTTATTGCAT 57.900 33.333 0.00 0.00 39.52 3.96
8270 10520 6.158598 ACACTGAAAATGTGGTTATTGCATC 58.841 36.000 0.00 0.00 39.52 3.91
8271 10521 6.157904 CACTGAAAATGTGGTTATTGCATCA 58.842 36.000 0.00 0.00 0.00 3.07
8272 10522 6.814644 CACTGAAAATGTGGTTATTGCATCAT 59.185 34.615 0.00 0.00 0.00 2.45
8273 10523 6.814644 ACTGAAAATGTGGTTATTGCATCATG 59.185 34.615 0.00 0.00 0.00 3.07
8274 10524 6.107343 TGAAAATGTGGTTATTGCATCATGG 58.893 36.000 0.00 0.00 0.00 3.66
8275 10525 5.936187 AAATGTGGTTATTGCATCATGGA 57.064 34.783 0.00 0.00 0.00 3.41
8276 10526 5.936187 AATGTGGTTATTGCATCATGGAA 57.064 34.783 0.00 0.00 30.73 3.53
8277 10527 4.987408 TGTGGTTATTGCATCATGGAAG 57.013 40.909 0.00 0.00 29.36 3.46
8278 10528 3.130869 TGTGGTTATTGCATCATGGAAGC 59.869 43.478 0.00 0.00 29.36 3.86
8279 10529 3.130869 GTGGTTATTGCATCATGGAAGCA 59.869 43.478 0.00 3.97 34.44 3.91
8280 10530 3.382227 TGGTTATTGCATCATGGAAGCAG 59.618 43.478 0.00 0.00 37.56 4.24
8281 10531 3.382546 GGTTATTGCATCATGGAAGCAGT 59.617 43.478 0.00 7.62 37.56 4.40
8282 10532 4.142093 GGTTATTGCATCATGGAAGCAGTT 60.142 41.667 0.00 4.09 37.56 3.16
8283 10533 5.067674 GGTTATTGCATCATGGAAGCAGTTA 59.932 40.000 0.00 3.37 37.56 2.24
8284 10534 6.239120 GGTTATTGCATCATGGAAGCAGTTAT 60.239 38.462 0.00 3.36 37.56 1.89
8285 10535 5.864418 ATTGCATCATGGAAGCAGTTATT 57.136 34.783 0.00 0.00 37.56 1.40
8286 10536 4.642445 TGCATCATGGAAGCAGTTATTG 57.358 40.909 3.97 0.00 31.25 1.90
8361 10611 6.331572 TCCATCCTTACAGATAATTTGGGCTA 59.668 38.462 0.00 0.00 0.00 3.93
8366 10616 8.429641 TCCTTACAGATAATTTGGGCTACTTAG 58.570 37.037 0.00 0.00 0.00 2.18
8371 10621 8.714906 ACAGATAATTTGGGCTACTTAGTGTAT 58.285 33.333 0.00 0.00 0.00 2.29
8398 10648 5.897377 TTTTGCAAATTACTAGGAGAGCC 57.103 39.130 13.65 0.00 0.00 4.70
8399 10649 3.179443 TGCAAATTACTAGGAGAGCCG 57.821 47.619 0.00 0.00 39.96 5.52
8400 10650 1.867865 GCAAATTACTAGGAGAGCCGC 59.132 52.381 0.00 0.00 39.96 6.53
8401 10651 2.128035 CAAATTACTAGGAGAGCCGCG 58.872 52.381 0.00 0.00 39.96 6.46
8472 10738 5.687780 AGGATGTGAAATGCATGAGTCATA 58.312 37.500 5.03 3.59 0.00 2.15
8548 10814 5.218139 CCAGATTACCGACGGAATACTAAC 58.782 45.833 23.38 4.14 0.00 2.34
8571 10837 1.672881 GCCAGGTTGCATGAGTCATAC 59.327 52.381 5.03 0.00 0.00 2.39
8576 10842 5.423015 CAGGTTGCATGAGTCATACTACTT 58.577 41.667 14.85 7.16 0.00 2.24
8578 10844 7.041721 CAGGTTGCATGAGTCATACTACTTAA 58.958 38.462 14.85 0.00 0.00 1.85
8579 10845 7.712639 CAGGTTGCATGAGTCATACTACTTAAT 59.287 37.037 14.85 1.03 0.00 1.40
8580 10846 8.267894 AGGTTGCATGAGTCATACTACTTAATT 58.732 33.333 14.85 0.00 0.00 1.40
8581 10847 9.542462 GGTTGCATGAGTCATACTACTTAATTA 57.458 33.333 14.85 0.00 0.00 1.40
8583 10849 8.818141 TGCATGAGTCATACTACTTAATTAGC 57.182 34.615 5.03 0.94 0.00 3.09
8584 10850 7.872993 TGCATGAGTCATACTACTTAATTAGCC 59.127 37.037 5.03 0.00 0.00 3.93
8585 10851 7.872993 GCATGAGTCATACTACTTAATTAGCCA 59.127 37.037 5.03 0.00 0.00 4.75
8612 10918 9.726438 GATCTGTTTACCCTGCAATTATATACT 57.274 33.333 0.00 0.00 0.00 2.12
8667 10994 3.550431 AGATACATGCGCGCCCCT 61.550 61.111 30.77 12.83 0.00 4.79
8679 11006 2.959484 CGCCCCTGATGTGGTGAGT 61.959 63.158 0.00 0.00 33.93 3.41
8680 11007 1.377725 GCCCCTGATGTGGTGAGTG 60.378 63.158 0.00 0.00 0.00 3.51
8681 11008 1.841302 GCCCCTGATGTGGTGAGTGA 61.841 60.000 0.00 0.00 0.00 3.41
8682 11009 0.251354 CCCCTGATGTGGTGAGTGAG 59.749 60.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.815615 CTAACCTCATTGCCTCGCCC 60.816 60.000 0.00 0.00 0.00 6.13
1 2 1.440145 GCTAACCTCATTGCCTCGCC 61.440 60.000 0.00 0.00 0.00 5.54
2 3 1.440145 GGCTAACCTCATTGCCTCGC 61.440 60.000 0.00 0.00 41.92 5.03
3 4 2.695314 GGCTAACCTCATTGCCTCG 58.305 57.895 0.00 0.00 41.92 4.63
6 7 0.034089 ACCAGGCTAACCTCATTGCC 60.034 55.000 0.00 0.00 46.34 4.52
7 8 1.383523 GACCAGGCTAACCTCATTGC 58.616 55.000 0.00 0.00 46.34 3.56
8 9 1.281867 TGGACCAGGCTAACCTCATTG 59.718 52.381 0.00 0.00 46.34 2.82
9 10 1.561542 CTGGACCAGGCTAACCTCATT 59.438 52.381 14.26 0.00 46.34 2.57
10 11 1.207791 CTGGACCAGGCTAACCTCAT 58.792 55.000 14.26 0.00 46.34 2.90
11 12 0.909610 CCTGGACCAGGCTAACCTCA 60.910 60.000 27.72 0.00 46.34 3.86
12 13 1.908483 CCTGGACCAGGCTAACCTC 59.092 63.158 27.72 0.00 46.34 3.85
22 23 2.830923 CAAATATTGGTTGCCTGGACCA 59.169 45.455 3.24 3.24 45.09 4.02
23 24 3.096092 TCAAATATTGGTTGCCTGGACC 58.904 45.455 0.00 0.00 37.69 4.46
24 25 3.509575 TGTCAAATATTGGTTGCCTGGAC 59.490 43.478 0.00 0.00 0.00 4.02
25 26 3.509575 GTGTCAAATATTGGTTGCCTGGA 59.490 43.478 0.00 0.00 0.00 3.86
26 27 3.368323 GGTGTCAAATATTGGTTGCCTGG 60.368 47.826 0.00 0.00 0.00 4.45
27 28 3.511146 AGGTGTCAAATATTGGTTGCCTG 59.489 43.478 0.00 0.00 0.00 4.85
28 29 3.511146 CAGGTGTCAAATATTGGTTGCCT 59.489 43.478 0.00 0.00 0.00 4.75
29 30 3.368323 CCAGGTGTCAAATATTGGTTGCC 60.368 47.826 0.00 0.00 0.00 4.52
30 31 3.368323 CCCAGGTGTCAAATATTGGTTGC 60.368 47.826 0.00 0.00 0.00 4.17
31 32 3.831911 ACCCAGGTGTCAAATATTGGTTG 59.168 43.478 0.00 0.00 0.00 3.77
32 33 4.126520 ACCCAGGTGTCAAATATTGGTT 57.873 40.909 0.00 0.00 0.00 3.67
33 34 3.825908 ACCCAGGTGTCAAATATTGGT 57.174 42.857 0.00 0.00 0.00 3.67
34 35 4.819769 CAAACCCAGGTGTCAAATATTGG 58.180 43.478 0.00 0.00 0.00 3.16
35 36 4.244862 GCAAACCCAGGTGTCAAATATTG 58.755 43.478 0.00 0.00 0.00 1.90
36 37 3.260632 GGCAAACCCAGGTGTCAAATATT 59.739 43.478 0.00 0.00 0.00 1.28
37 38 2.831526 GGCAAACCCAGGTGTCAAATAT 59.168 45.455 0.00 0.00 0.00 1.28
38 39 2.158385 AGGCAAACCCAGGTGTCAAATA 60.158 45.455 0.00 0.00 36.11 1.40
39 40 1.047801 GGCAAACCCAGGTGTCAAAT 58.952 50.000 0.00 0.00 0.00 2.32
40 41 0.032615 AGGCAAACCCAGGTGTCAAA 60.033 50.000 0.00 0.00 36.11 2.69
41 42 0.754957 CAGGCAAACCCAGGTGTCAA 60.755 55.000 0.00 0.00 36.11 3.18
42 43 1.152777 CAGGCAAACCCAGGTGTCA 60.153 57.895 0.00 0.00 36.11 3.58
43 44 1.903404 CCAGGCAAACCCAGGTGTC 60.903 63.158 0.00 0.00 35.59 3.67
44 45 2.198426 CCAGGCAAACCCAGGTGT 59.802 61.111 0.00 0.00 35.59 4.16
47 48 3.305516 GCACCAGGCAAACCCAGG 61.306 66.667 0.00 0.00 45.50 4.45
56 57 2.670934 CAGACAGGTGCACCAGGC 60.671 66.667 36.39 31.40 45.13 4.85
57 58 2.033141 CCAGACAGGTGCACCAGG 59.967 66.667 36.39 28.55 38.89 4.45
58 59 2.033141 CCCAGACAGGTGCACCAG 59.967 66.667 36.39 30.89 38.89 4.00
59 60 2.772191 ACCCAGACAGGTGCACCA 60.772 61.111 36.39 0.00 39.24 4.17
65 66 4.721776 ACATATGATTACACCCAGACAGGT 59.278 41.667 10.38 0.00 42.40 4.00
66 67 5.059161 CACATATGATTACACCCAGACAGG 58.941 45.833 10.38 0.00 37.03 4.00
67 68 4.512944 GCACATATGATTACACCCAGACAG 59.487 45.833 10.38 0.00 0.00 3.51
68 69 4.164030 AGCACATATGATTACACCCAGACA 59.836 41.667 10.38 0.00 0.00 3.41
69 70 4.708177 AGCACATATGATTACACCCAGAC 58.292 43.478 10.38 0.00 0.00 3.51
70 71 6.493189 TTAGCACATATGATTACACCCAGA 57.507 37.500 10.38 0.00 0.00 3.86
71 72 6.936335 TGATTAGCACATATGATTACACCCAG 59.064 38.462 10.38 0.00 0.00 4.45
72 73 6.836242 TGATTAGCACATATGATTACACCCA 58.164 36.000 10.38 0.00 0.00 4.51
73 74 7.928307 ATGATTAGCACATATGATTACACCC 57.072 36.000 10.38 0.00 0.00 4.61
76 77 9.166173 GCCTAATGATTAGCACATATGATTACA 57.834 33.333 10.38 1.05 31.81 2.41
77 78 9.388506 AGCCTAATGATTAGCACATATGATTAC 57.611 33.333 10.38 0.00 31.81 1.89
110 111 9.927668 CACTATTTTATTTTCATCCACCTTGTT 57.072 29.630 0.00 0.00 0.00 2.83
111 112 9.308000 TCACTATTTTATTTTCATCCACCTTGT 57.692 29.630 0.00 0.00 0.00 3.16
112 113 9.573133 GTCACTATTTTATTTTCATCCACCTTG 57.427 33.333 0.00 0.00 0.00 3.61
113 114 9.308000 TGTCACTATTTTATTTTCATCCACCTT 57.692 29.630 0.00 0.00 0.00 3.50
114 115 8.877864 TGTCACTATTTTATTTTCATCCACCT 57.122 30.769 0.00 0.00 0.00 4.00
115 116 9.736023 GATGTCACTATTTTATTTTCATCCACC 57.264 33.333 0.00 0.00 0.00 4.61
127 128 8.475639 GGTGGAGTCTAAGATGTCACTATTTTA 58.524 37.037 0.00 0.00 0.00 1.52
128 129 7.038302 TGGTGGAGTCTAAGATGTCACTATTTT 60.038 37.037 0.00 0.00 0.00 1.82
129 130 6.440647 TGGTGGAGTCTAAGATGTCACTATTT 59.559 38.462 0.00 0.00 0.00 1.40
130 131 5.958380 TGGTGGAGTCTAAGATGTCACTATT 59.042 40.000 0.00 0.00 0.00 1.73
131 132 5.519808 TGGTGGAGTCTAAGATGTCACTAT 58.480 41.667 0.00 0.00 0.00 2.12
132 133 4.930696 TGGTGGAGTCTAAGATGTCACTA 58.069 43.478 0.00 0.00 0.00 2.74
133 134 3.766591 CTGGTGGAGTCTAAGATGTCACT 59.233 47.826 0.00 0.00 0.00 3.41
134 135 3.118956 CCTGGTGGAGTCTAAGATGTCAC 60.119 52.174 0.00 0.00 34.57 3.67
135 136 3.099905 CCTGGTGGAGTCTAAGATGTCA 58.900 50.000 0.00 0.00 34.57 3.58
136 137 2.159028 GCCTGGTGGAGTCTAAGATGTC 60.159 54.545 0.00 0.00 34.57 3.06
137 138 1.834263 GCCTGGTGGAGTCTAAGATGT 59.166 52.381 0.00 0.00 34.57 3.06
138 139 1.139853 GGCCTGGTGGAGTCTAAGATG 59.860 57.143 0.00 0.00 34.57 2.90
139 140 1.273838 TGGCCTGGTGGAGTCTAAGAT 60.274 52.381 3.32 0.00 34.57 2.40
140 141 0.116342 TGGCCTGGTGGAGTCTAAGA 59.884 55.000 3.32 0.00 34.57 2.10
141 142 0.539051 CTGGCCTGGTGGAGTCTAAG 59.461 60.000 3.32 0.00 34.57 2.18
142 143 0.909610 CCTGGCCTGGTGGAGTCTAA 60.910 60.000 20.28 0.00 34.57 2.10
143 144 1.306141 CCTGGCCTGGTGGAGTCTA 60.306 63.158 20.28 0.00 34.57 2.59
144 145 2.608988 CCTGGCCTGGTGGAGTCT 60.609 66.667 20.28 0.00 34.57 3.24
145 146 4.416738 GCCTGGCCTGGTGGAGTC 62.417 72.222 27.68 8.14 34.57 3.36
156 157 1.367471 GTTTGGTTTGAGGCCTGGC 59.633 57.895 12.00 11.05 0.00 4.85
157 158 0.389025 GTGTTTGGTTTGAGGCCTGG 59.611 55.000 12.00 0.00 0.00 4.45
158 159 0.389025 GGTGTTTGGTTTGAGGCCTG 59.611 55.000 12.00 0.00 0.00 4.85
159 160 0.261696 AGGTGTTTGGTTTGAGGCCT 59.738 50.000 3.86 3.86 0.00 5.19
160 161 0.673985 GAGGTGTTTGGTTTGAGGCC 59.326 55.000 0.00 0.00 0.00 5.19
161 162 0.673985 GGAGGTGTTTGGTTTGAGGC 59.326 55.000 0.00 0.00 0.00 4.70
162 163 2.230660 GAGGAGGTGTTTGGTTTGAGG 58.769 52.381 0.00 0.00 0.00 3.86
163 164 2.230660 GGAGGAGGTGTTTGGTTTGAG 58.769 52.381 0.00 0.00 0.00 3.02
164 165 1.476110 CGGAGGAGGTGTTTGGTTTGA 60.476 52.381 0.00 0.00 0.00 2.69
165 166 0.951558 CGGAGGAGGTGTTTGGTTTG 59.048 55.000 0.00 0.00 0.00 2.93
166 167 0.549469 ACGGAGGAGGTGTTTGGTTT 59.451 50.000 0.00 0.00 0.00 3.27
167 168 1.426751 TACGGAGGAGGTGTTTGGTT 58.573 50.000 0.00 0.00 0.00 3.67
168 169 1.278127 CATACGGAGGAGGTGTTTGGT 59.722 52.381 0.00 0.00 0.00 3.67
169 170 2.012051 GCATACGGAGGAGGTGTTTGG 61.012 57.143 0.00 0.00 0.00 3.28
170 171 1.369625 GCATACGGAGGAGGTGTTTG 58.630 55.000 0.00 0.00 0.00 2.93
171 172 0.108329 CGCATACGGAGGAGGTGTTT 60.108 55.000 0.00 0.00 34.97 2.83
172 173 1.515954 CGCATACGGAGGAGGTGTT 59.484 57.895 0.00 0.00 34.97 3.32
173 174 3.077519 GCGCATACGGAGGAGGTGT 62.078 63.158 0.30 0.00 40.57 4.16
174 175 2.279517 GCGCATACGGAGGAGGTG 60.280 66.667 0.30 0.00 40.57 4.00
175 176 2.442272 AGCGCATACGGAGGAGGT 60.442 61.111 11.47 0.00 40.57 3.85
176 177 2.028190 CAGCGCATACGGAGGAGG 59.972 66.667 11.47 0.00 40.57 4.30
177 178 2.028190 CCAGCGCATACGGAGGAG 59.972 66.667 11.47 0.00 40.57 3.69
178 179 4.221422 GCCAGCGCATACGGAGGA 62.221 66.667 11.47 0.00 40.57 3.71
180 181 4.227134 AGGCCAGCGCATACGGAG 62.227 66.667 11.47 0.00 40.57 4.63
181 182 4.529219 CAGGCCAGCGCATACGGA 62.529 66.667 11.47 0.00 40.57 4.69
210 211 7.804843 TTTGTGCATGAGAATTTGGATTTTT 57.195 28.000 0.00 0.00 0.00 1.94
211 212 7.662258 TGATTTGTGCATGAGAATTTGGATTTT 59.338 29.630 0.00 0.00 0.00 1.82
212 213 7.162761 TGATTTGTGCATGAGAATTTGGATTT 58.837 30.769 0.00 0.00 0.00 2.17
213 214 6.703319 TGATTTGTGCATGAGAATTTGGATT 58.297 32.000 0.00 0.00 0.00 3.01
214 215 6.153851 TCTGATTTGTGCATGAGAATTTGGAT 59.846 34.615 0.00 0.00 0.00 3.41
215 216 5.477637 TCTGATTTGTGCATGAGAATTTGGA 59.522 36.000 0.00 0.00 0.00 3.53
216 217 5.575606 GTCTGATTTGTGCATGAGAATTTGG 59.424 40.000 0.00 0.00 0.00 3.28
217 218 6.089016 GTGTCTGATTTGTGCATGAGAATTTG 59.911 38.462 0.00 0.00 0.00 2.32
218 219 6.154445 GTGTCTGATTTGTGCATGAGAATTT 58.846 36.000 0.00 0.00 0.00 1.82
219 220 5.336213 GGTGTCTGATTTGTGCATGAGAATT 60.336 40.000 0.00 0.00 0.00 2.17
220 221 4.157289 GGTGTCTGATTTGTGCATGAGAAT 59.843 41.667 0.00 0.00 0.00 2.40
221 222 3.503363 GGTGTCTGATTTGTGCATGAGAA 59.497 43.478 0.00 0.00 0.00 2.87
222 223 3.076621 GGTGTCTGATTTGTGCATGAGA 58.923 45.455 0.00 0.00 0.00 3.27
223 224 2.815503 TGGTGTCTGATTTGTGCATGAG 59.184 45.455 0.00 0.00 0.00 2.90
224 225 2.861274 TGGTGTCTGATTTGTGCATGA 58.139 42.857 0.00 0.00 0.00 3.07
225 226 3.646611 TTGGTGTCTGATTTGTGCATG 57.353 42.857 0.00 0.00 0.00 4.06
226 227 4.669206 TTTTGGTGTCTGATTTGTGCAT 57.331 36.364 0.00 0.00 0.00 3.96
227 228 4.462508 TTTTTGGTGTCTGATTTGTGCA 57.537 36.364 0.00 0.00 0.00 4.57
228 229 5.050159 GGAATTTTTGGTGTCTGATTTGTGC 60.050 40.000 0.00 0.00 0.00 4.57
229 230 5.466393 GGGAATTTTTGGTGTCTGATTTGTG 59.534 40.000 0.00 0.00 0.00 3.33
230 231 5.130145 TGGGAATTTTTGGTGTCTGATTTGT 59.870 36.000 0.00 0.00 0.00 2.83
231 232 5.609423 TGGGAATTTTTGGTGTCTGATTTG 58.391 37.500 0.00 0.00 0.00 2.32
232 233 5.221702 CCTGGGAATTTTTGGTGTCTGATTT 60.222 40.000 0.00 0.00 0.00 2.17
233 234 4.284234 CCTGGGAATTTTTGGTGTCTGATT 59.716 41.667 0.00 0.00 0.00 2.57
234 235 3.834231 CCTGGGAATTTTTGGTGTCTGAT 59.166 43.478 0.00 0.00 0.00 2.90
235 236 3.230134 CCTGGGAATTTTTGGTGTCTGA 58.770 45.455 0.00 0.00 0.00 3.27
236 237 2.289010 GCCTGGGAATTTTTGGTGTCTG 60.289 50.000 0.00 0.00 0.00 3.51
237 238 1.970640 GCCTGGGAATTTTTGGTGTCT 59.029 47.619 0.00 0.00 0.00 3.41
238 239 1.336795 CGCCTGGGAATTTTTGGTGTC 60.337 52.381 0.00 0.00 0.00 3.67
239 240 0.678950 CGCCTGGGAATTTTTGGTGT 59.321 50.000 0.00 0.00 0.00 4.16
240 241 0.678950 ACGCCTGGGAATTTTTGGTG 59.321 50.000 0.00 0.00 0.00 4.17
241 242 1.890489 GTACGCCTGGGAATTTTTGGT 59.110 47.619 0.00 0.00 0.00 3.67
242 243 2.167662 AGTACGCCTGGGAATTTTTGG 58.832 47.619 0.00 0.00 0.00 3.28
243 244 3.934457 AAGTACGCCTGGGAATTTTTG 57.066 42.857 0.00 0.00 0.00 2.44
244 245 4.342665 TGAAAAGTACGCCTGGGAATTTTT 59.657 37.500 0.00 0.00 0.00 1.94
245 246 3.892588 TGAAAAGTACGCCTGGGAATTTT 59.107 39.130 0.00 0.00 0.00 1.82
246 247 3.492337 TGAAAAGTACGCCTGGGAATTT 58.508 40.909 0.00 0.00 0.00 1.82
247 248 3.081804 CTGAAAAGTACGCCTGGGAATT 58.918 45.455 0.00 0.00 0.00 2.17
248 249 2.618045 CCTGAAAAGTACGCCTGGGAAT 60.618 50.000 0.00 0.00 0.00 3.01
249 250 1.271163 CCTGAAAAGTACGCCTGGGAA 60.271 52.381 0.00 0.00 0.00 3.97
250 251 0.323629 CCTGAAAAGTACGCCTGGGA 59.676 55.000 0.00 0.00 0.00 4.37
251 252 0.323629 TCCTGAAAAGTACGCCTGGG 59.676 55.000 0.00 0.00 0.00 4.45
252 253 2.076863 CTTCCTGAAAAGTACGCCTGG 58.923 52.381 0.00 0.00 0.00 4.45
253 254 1.464997 GCTTCCTGAAAAGTACGCCTG 59.535 52.381 0.00 0.00 0.00 4.85
254 255 1.610886 GGCTTCCTGAAAAGTACGCCT 60.611 52.381 0.00 0.00 33.68 5.52
255 256 0.803117 GGCTTCCTGAAAAGTACGCC 59.197 55.000 0.00 0.00 0.00 5.68
256 257 1.519408 TGGCTTCCTGAAAAGTACGC 58.481 50.000 0.00 0.00 0.00 4.42
257 258 2.225727 GGTTGGCTTCCTGAAAAGTACG 59.774 50.000 0.00 0.00 0.00 3.67
258 259 3.219281 TGGTTGGCTTCCTGAAAAGTAC 58.781 45.455 0.00 0.00 0.00 2.73
259 260 3.586470 TGGTTGGCTTCCTGAAAAGTA 57.414 42.857 0.00 0.00 0.00 2.24
260 261 2.452600 TGGTTGGCTTCCTGAAAAGT 57.547 45.000 0.00 0.00 0.00 2.66
261 262 3.132824 AGTTTGGTTGGCTTCCTGAAAAG 59.867 43.478 0.00 0.00 0.00 2.27
262 263 3.103742 AGTTTGGTTGGCTTCCTGAAAA 58.896 40.909 0.00 0.00 0.00 2.29
263 264 2.430332 CAGTTTGGTTGGCTTCCTGAAA 59.570 45.455 0.00 0.00 0.00 2.69
264 265 2.031120 CAGTTTGGTTGGCTTCCTGAA 58.969 47.619 0.00 0.00 0.00 3.02
265 266 1.691196 CAGTTTGGTTGGCTTCCTGA 58.309 50.000 0.00 0.00 0.00 3.86
266 267 0.032540 GCAGTTTGGTTGGCTTCCTG 59.967 55.000 0.00 0.00 0.00 3.86
267 268 1.115326 GGCAGTTTGGTTGGCTTCCT 61.115 55.000 0.00 0.00 38.03 3.36
268 269 1.367471 GGCAGTTTGGTTGGCTTCC 59.633 57.895 0.00 0.00 38.03 3.46
269 270 1.007387 CGGCAGTTTGGTTGGCTTC 60.007 57.895 0.00 0.00 38.82 3.86
270 271 3.128375 CGGCAGTTTGGTTGGCTT 58.872 55.556 0.00 0.00 38.82 4.35
271 272 3.605664 GCGGCAGTTTGGTTGGCT 61.606 61.111 0.00 0.00 38.82 4.75
272 273 1.872197 TATGCGGCAGTTTGGTTGGC 61.872 55.000 9.25 0.00 37.72 4.52
273 274 0.109319 GTATGCGGCAGTTTGGTTGG 60.109 55.000 9.25 0.00 0.00 3.77
274 275 0.881118 AGTATGCGGCAGTTTGGTTG 59.119 50.000 9.25 0.00 0.00 3.77
275 276 1.165270 GAGTATGCGGCAGTTTGGTT 58.835 50.000 9.25 0.00 0.00 3.67
276 277 0.676782 GGAGTATGCGGCAGTTTGGT 60.677 55.000 9.25 0.00 0.00 3.67
277 278 1.376609 GGGAGTATGCGGCAGTTTGG 61.377 60.000 9.25 0.00 0.00 3.28
278 279 1.376609 GGGGAGTATGCGGCAGTTTG 61.377 60.000 9.25 0.00 0.00 2.93
297 298 2.157085 GCGACACTTCTTTTAAGACGGG 59.843 50.000 0.00 0.00 34.20 5.28
299 300 4.446857 TTGCGACACTTCTTTTAAGACG 57.553 40.909 0.00 0.00 34.13 4.18
304 305 5.297547 AGAGTGATTGCGACACTTCTTTTA 58.702 37.500 10.60 0.00 46.57 1.52
369 371 2.575532 CTGGTGGGCACATGGTAATAG 58.424 52.381 0.00 0.00 0.00 1.73
382 384 0.251354 CTCTCATGTGACCTGGTGGG 59.749 60.000 2.82 0.00 41.89 4.61
465 468 3.538634 AAGTCGGCTTAGGGTTACATC 57.461 47.619 0.00 0.00 32.27 3.06
467 470 5.425196 AATAAAGTCGGCTTAGGGTTACA 57.575 39.130 0.94 0.00 33.95 2.41
494 507 3.656651 ACGTTTCGTATATCGTCGTGA 57.343 42.857 0.00 0.00 38.73 4.35
561 578 2.511600 CAGGATCGTGGCCCGTTC 60.512 66.667 7.54 12.90 37.94 3.95
567 584 0.249238 CTGTCTAGCAGGATCGTGGC 60.249 60.000 16.66 9.16 41.42 5.01
604 621 6.291060 CCGAATTCGTCTCAAAACACAAAAAG 60.291 38.462 25.10 0.79 37.74 2.27
605 622 5.513495 CCGAATTCGTCTCAAAACACAAAAA 59.487 36.000 25.10 0.00 37.74 1.94
617 634 4.089636 GTGACTGTTAACCGAATTCGTCTC 59.910 45.833 25.10 11.10 37.74 3.36
632 653 4.156922 TGTCAAATTCCGTTTGTGACTGTT 59.843 37.500 5.93 0.00 45.87 3.16
733 765 1.921869 AATACAGGTTGGGAGGCCGG 61.922 60.000 0.00 0.00 0.00 6.13
735 767 0.919710 AGAATACAGGTTGGGAGGCC 59.080 55.000 0.00 0.00 0.00 5.19
736 768 4.390264 GAATAGAATACAGGTTGGGAGGC 58.610 47.826 0.00 0.00 0.00 4.70
739 771 4.291792 TCCGAATAGAATACAGGTTGGGA 58.708 43.478 0.00 0.00 0.00 4.37
740 772 4.682778 TCCGAATAGAATACAGGTTGGG 57.317 45.455 0.00 0.00 0.00 4.12
741 773 4.814771 GGTTCCGAATAGAATACAGGTTGG 59.185 45.833 0.00 0.00 0.00 3.77
742 774 5.671493 AGGTTCCGAATAGAATACAGGTTG 58.329 41.667 0.00 0.00 0.00 3.77
743 775 5.952347 AGGTTCCGAATAGAATACAGGTT 57.048 39.130 0.00 0.00 0.00 3.50
1430 1552 3.925914 AAGGGTCCCTGGGGTCGAG 62.926 68.421 12.53 0.00 32.13 4.04
1433 1555 3.400054 CGAAGGGTCCCTGGGGTC 61.400 72.222 12.53 4.01 32.13 4.46
1461 1583 1.289160 CAAAGGGTCCCTGAGATGGA 58.711 55.000 12.53 0.00 32.13 3.41
1462 1584 0.257039 CCAAAGGGTCCCTGAGATGG 59.743 60.000 12.53 13.88 32.13 3.51
1463 1585 0.394899 GCCAAAGGGTCCCTGAGATG 60.395 60.000 12.53 8.62 32.13 2.90
1464 1586 1.915078 CGCCAAAGGGTCCCTGAGAT 61.915 60.000 12.53 0.00 32.13 2.75
1465 1587 2.592993 CGCCAAAGGGTCCCTGAGA 61.593 63.158 12.53 0.00 32.13 3.27
1466 1588 2.045926 CGCCAAAGGGTCCCTGAG 60.046 66.667 12.53 7.06 32.13 3.35
1467 1589 4.344865 GCGCCAAAGGGTCCCTGA 62.345 66.667 12.53 0.00 32.13 3.86
1483 1605 4.980805 TTGAGACGGTGGTGCGGC 62.981 66.667 0.00 0.00 0.00 6.53
1484 1606 2.738521 CTTGAGACGGTGGTGCGG 60.739 66.667 0.00 0.00 0.00 5.69
1485 1607 2.738521 CCTTGAGACGGTGGTGCG 60.739 66.667 0.00 0.00 0.00 5.34
1486 1608 3.050275 GCCTTGAGACGGTGGTGC 61.050 66.667 0.00 0.00 0.00 5.01
1487 1609 2.358737 GGCCTTGAGACGGTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
1488 1610 3.637273 GGGCCTTGAGACGGTGGT 61.637 66.667 0.84 0.00 0.00 4.16
1489 1611 2.411765 AAAGGGCCTTGAGACGGTGG 62.412 60.000 21.72 0.00 0.00 4.61
1490 1612 0.537371 AAAAGGGCCTTGAGACGGTG 60.537 55.000 21.72 0.00 0.00 4.94
1491 1613 0.537371 CAAAAGGGCCTTGAGACGGT 60.537 55.000 21.72 0.00 0.00 4.83
1532 1654 2.997897 GAGCTGACGGTGGAGGGT 60.998 66.667 0.00 0.00 0.00 4.34
1579 1701 0.746563 TAAGTTGGCGGTGGCATAGC 60.747 55.000 8.37 8.37 42.47 2.97
1587 1709 0.676782 GCCTCACATAAGTTGGCGGT 60.677 55.000 0.00 0.00 35.83 5.68
1590 1712 1.993369 GCGGCCTCACATAAGTTGGC 61.993 60.000 0.00 3.94 41.46 4.52
1593 1715 1.449601 CGGCGGCCTCACATAAGTT 60.450 57.895 18.34 0.00 0.00 2.66
1647 1769 1.442148 GTTAGGGCCGCCAGAGTAG 59.558 63.158 12.58 0.00 0.00 2.57
1656 1778 0.958876 GAAACTGTGGGTTAGGGCCG 60.959 60.000 0.00 0.00 37.12 6.13
1726 1848 3.672503 GGAAGGTGGCCCCATGGT 61.673 66.667 11.73 0.00 34.66 3.55
1746 1868 2.403252 ATGCTGGCTGGTTACTGTAC 57.597 50.000 0.00 0.00 0.00 2.90
1770 1892 1.338136 CCATCGGAGGCCCTGTAGTT 61.338 60.000 0.00 0.00 0.00 2.24
1842 1964 2.990479 GGGTCAAGCGATCCAGGT 59.010 61.111 0.00 0.00 42.67 4.00
1936 2058 0.693622 TACCTCGGGTGGCAATTCAA 59.306 50.000 5.90 0.00 36.19 2.69
2025 2147 0.752658 CGAGAGGATGTACCATGGCA 59.247 55.000 13.04 2.49 42.04 4.92
2029 2151 2.073252 TCTGCGAGAGGATGTACCAT 57.927 50.000 0.00 0.00 42.04 3.55
2304 2431 4.277258 CATTCAATACGCACTGAATCTGC 58.723 43.478 4.07 0.00 39.66 4.26
2335 2467 2.486966 GCTGGCAGAAACATCGGC 59.513 61.111 20.86 0.00 0.00 5.54
2444 2648 4.983538 TCACACTGCTTTGCAAACATTATG 59.016 37.500 8.05 11.67 38.41 1.90
2561 2813 2.423185 CAGTGAGGCGCCAATGATTAAA 59.577 45.455 31.54 0.00 34.40 1.52
2592 2874 4.363991 AGACAAAACATCTCTGCCTCTT 57.636 40.909 0.00 0.00 0.00 2.85
2716 3000 5.104735 TGGAAAACAGCAATAAAAAGGTGGT 60.105 36.000 0.00 0.00 37.55 4.16
2752 3039 7.982761 AAATTCTTGCATTAAAAGATGGCAA 57.017 28.000 0.00 0.00 33.79 4.52
2754 3041 8.031848 TCAAAATTCTTGCATTAAAAGATGGC 57.968 30.769 0.00 0.00 33.79 4.40
2871 3174 5.372373 TGACATTTAGTGTGATGGTCAACA 58.628 37.500 0.00 0.00 42.36 3.33
2935 3238 7.202011 GGCCTCGGTATAATCACAATATATCCT 60.202 40.741 0.00 0.00 0.00 3.24
2939 3242 5.962031 AGGGCCTCGGTATAATCACAATATA 59.038 40.000 0.00 0.00 0.00 0.86
2940 3243 4.783227 AGGGCCTCGGTATAATCACAATAT 59.217 41.667 0.00 0.00 0.00 1.28
2941 3244 4.020573 CAGGGCCTCGGTATAATCACAATA 60.021 45.833 0.95 0.00 0.00 1.90
3015 3319 9.733556 TGGTTAAGCTTGAACTAAGATATCAAA 57.266 29.630 9.86 0.00 38.76 2.69
3016 3320 9.162764 GTGGTTAAGCTTGAACTAAGATATCAA 57.837 33.333 9.86 0.00 38.76 2.57
3077 3413 7.065324 CCACTTAATCTTTATTCTAACGTGCCA 59.935 37.037 0.00 0.00 0.00 4.92
3083 3419 7.468768 GCTGGCCCACTTAATCTTTATTCTAAC 60.469 40.741 0.00 0.00 0.00 2.34
3138 3497 6.091305 TGACAGAAAGCATCGAGTATTTCTTG 59.909 38.462 15.12 13.30 39.37 3.02
3146 3505 1.269723 TCGTGACAGAAAGCATCGAGT 59.730 47.619 0.00 0.00 0.00 4.18
3149 3508 3.243877 CCTTATCGTGACAGAAAGCATCG 59.756 47.826 0.00 0.00 0.00 3.84
3151 3510 4.207891 ACCTTATCGTGACAGAAAGCAT 57.792 40.909 0.00 0.00 0.00 3.79
3162 3521 7.683437 TGACTACTCCATATACCTTATCGTG 57.317 40.000 0.00 0.00 0.00 4.35
3163 3522 8.701908 TTTGACTACTCCATATACCTTATCGT 57.298 34.615 0.00 0.00 0.00 3.73
3241 3613 6.425114 GGGTACAAGTGTATGCTCATTCTATG 59.575 42.308 0.00 0.00 32.54 2.23
3403 3778 6.106673 CCGACCCAAAGTATATAGCTTATGG 58.893 44.000 0.00 12.66 0.00 2.74
3630 4007 7.575414 TTCTACCTCAAGCACTATCTCTAAG 57.425 40.000 0.00 0.00 0.00 2.18
3695 4073 9.764363 GGTACATACAGATCTCATAAATGACAA 57.236 33.333 0.00 0.00 32.50 3.18
3696 4074 8.923270 TGGTACATACAGATCTCATAAATGACA 58.077 33.333 0.00 0.00 32.50 3.58
3697 4075 9.416794 CTGGTACATACAGATCTCATAAATGAC 57.583 37.037 0.00 0.00 38.20 3.06
3698 4076 9.147732 ACTGGTACATACAGATCTCATAAATGA 57.852 33.333 4.82 0.00 38.20 2.57
3699 4077 9.201127 CACTGGTACATACAGATCTCATAAATG 57.799 37.037 4.82 0.00 38.20 2.32
3700 4078 7.875041 GCACTGGTACATACAGATCTCATAAAT 59.125 37.037 4.82 0.00 38.20 1.40
3701 4079 7.069950 AGCACTGGTACATACAGATCTCATAAA 59.930 37.037 4.82 0.00 38.20 1.40
3702 4080 6.551227 AGCACTGGTACATACAGATCTCATAA 59.449 38.462 4.82 0.00 38.20 1.90
3703 4081 6.071320 AGCACTGGTACATACAGATCTCATA 58.929 40.000 4.82 0.00 38.20 2.15
3704 4082 4.898265 AGCACTGGTACATACAGATCTCAT 59.102 41.667 4.82 0.00 38.20 2.90
3705 4083 4.281657 AGCACTGGTACATACAGATCTCA 58.718 43.478 4.82 0.00 38.20 3.27
3706 4084 4.927978 AGCACTGGTACATACAGATCTC 57.072 45.455 4.82 0.00 38.20 2.75
3707 4085 5.300539 CACTAGCACTGGTACATACAGATCT 59.699 44.000 4.82 0.00 38.20 2.75
3708 4086 5.524284 CACTAGCACTGGTACATACAGATC 58.476 45.833 4.82 0.00 38.20 2.75
3709 4087 4.202161 GCACTAGCACTGGTACATACAGAT 60.202 45.833 4.82 0.00 41.58 2.90
3710 4088 3.130516 GCACTAGCACTGGTACATACAGA 59.869 47.826 4.82 0.00 41.58 3.41
3711 4089 3.131223 AGCACTAGCACTGGTACATACAG 59.869 47.826 0.00 0.00 45.49 2.74
3712 4090 3.096852 AGCACTAGCACTGGTACATACA 58.903 45.455 0.00 0.00 45.49 2.29
3713 4091 3.130516 TCAGCACTAGCACTGGTACATAC 59.869 47.826 11.54 0.00 45.49 2.39
3714 4092 3.130516 GTCAGCACTAGCACTGGTACATA 59.869 47.826 11.54 0.00 45.49 2.29
3715 4093 2.093973 GTCAGCACTAGCACTGGTACAT 60.094 50.000 11.54 0.00 45.49 2.29
3716 4094 1.272490 GTCAGCACTAGCACTGGTACA 59.728 52.381 11.54 0.00 45.49 2.90
3717 4095 1.546476 AGTCAGCACTAGCACTGGTAC 59.454 52.381 11.54 5.03 45.49 3.34
3718 4096 1.546029 CAGTCAGCACTAGCACTGGTA 59.454 52.381 11.54 0.00 45.49 3.25
3719 4097 0.319728 CAGTCAGCACTAGCACTGGT 59.680 55.000 11.54 0.00 45.49 4.00
3720 4098 0.605083 TCAGTCAGCACTAGCACTGG 59.395 55.000 11.54 0.00 42.15 4.00
3721 4099 2.166050 AGATCAGTCAGCACTAGCACTG 59.834 50.000 6.31 6.31 42.82 3.66
3722 4100 2.426738 GAGATCAGTCAGCACTAGCACT 59.573 50.000 0.00 0.00 45.49 4.40
3723 4101 2.426738 AGAGATCAGTCAGCACTAGCAC 59.573 50.000 0.00 0.00 45.49 4.40
3724 4102 2.732763 AGAGATCAGTCAGCACTAGCA 58.267 47.619 0.00 0.00 45.49 3.49
4059 4482 3.048600 TCCTACAGCCCTAATCTGCATT 58.951 45.455 0.00 0.00 35.04 3.56
4358 4789 3.755905 TCAAAGAACACAAGTTGAGCACA 59.244 39.130 10.54 0.00 38.30 4.57
4361 4792 5.343249 ACAATCAAAGAACACAAGTTGAGC 58.657 37.500 10.54 0.00 38.30 4.26
4625 5084 1.135546 CACACAAGAACAACCAACGCA 60.136 47.619 0.00 0.00 0.00 5.24
4939 5400 1.960689 CTTTCAACGGGGGTTGTCAAT 59.039 47.619 6.83 0.00 35.91 2.57
5207 6016 6.679327 AAACTAACGAGGCAAGGAAATATC 57.321 37.500 0.00 0.00 0.00 1.63
5419 6258 4.574674 TGACAGGAAAGGATACAGCAAT 57.425 40.909 0.00 0.00 41.41 3.56
5453 6292 2.037901 CAAGAGATAGAGAGCAGGGCA 58.962 52.381 0.00 0.00 0.00 5.36
5454 6293 2.315176 TCAAGAGATAGAGAGCAGGGC 58.685 52.381 0.00 0.00 0.00 5.19
5455 6294 5.549742 AAATCAAGAGATAGAGAGCAGGG 57.450 43.478 0.00 0.00 33.08 4.45
5634 6595 1.341080 CAGGGGGTGCTTTGACAATT 58.659 50.000 0.00 0.00 0.00 2.32
5635 6596 3.056213 CAGGGGGTGCTTTGACAAT 57.944 52.632 0.00 0.00 0.00 2.71
5649 6610 3.493334 ACATCCAACATCATATGCAGGG 58.507 45.455 0.00 0.00 0.00 4.45
5857 6819 2.109425 AACCGATTCTAGCCAACACC 57.891 50.000 0.00 0.00 0.00 4.16
6072 7039 7.187336 TCTGGATATATCAGTCTCCCTCCTATT 59.813 40.741 14.60 0.00 34.15 1.73
6309 7339 8.736244 GCACTGGATAAAAGGTTTAATCAGTTA 58.264 33.333 12.54 0.00 31.60 2.24
6673 7746 3.914312 TCGGCTCTAGAAACTGAAACTG 58.086 45.455 0.00 0.00 0.00 3.16
6882 7964 6.652481 AGCCATCATCAAGAAGATATAAACCG 59.348 38.462 0.00 0.00 34.43 4.44
7572 8771 1.065418 CCAATGGTTAAGAGGGCGACT 60.065 52.381 0.00 0.00 0.00 4.18
7861 9080 2.492088 TCCAGATCAGTACCAACAGTCG 59.508 50.000 0.00 0.00 0.00 4.18
7930 9150 2.293399 ACCAAAGACTCCAAACGATTGC 59.707 45.455 0.00 0.00 35.10 3.56
7934 9154 2.038033 CCCTACCAAAGACTCCAAACGA 59.962 50.000 0.00 0.00 0.00 3.85
7935 9155 2.423577 CCCTACCAAAGACTCCAAACG 58.576 52.381 0.00 0.00 0.00 3.60
7936 9156 2.107726 ACCCCTACCAAAGACTCCAAAC 59.892 50.000 0.00 0.00 0.00 2.93
7937 9157 2.424793 ACCCCTACCAAAGACTCCAAA 58.575 47.619 0.00 0.00 0.00 3.28
7939 9159 2.107552 CAAACCCCTACCAAAGACTCCA 59.892 50.000 0.00 0.00 0.00 3.86
7940 9160 2.107726 ACAAACCCCTACCAAAGACTCC 59.892 50.000 0.00 0.00 0.00 3.85
7941 9161 3.503800 ACAAACCCCTACCAAAGACTC 57.496 47.619 0.00 0.00 0.00 3.36
7943 9163 4.070009 CAGTACAAACCCCTACCAAAGAC 58.930 47.826 0.00 0.00 0.00 3.01
7945 9165 4.360951 TCAGTACAAACCCCTACCAAAG 57.639 45.455 0.00 0.00 0.00 2.77
7946 9166 5.327737 AATCAGTACAAACCCCTACCAAA 57.672 39.130 0.00 0.00 0.00 3.28
7949 9169 4.014406 CCAAATCAGTACAAACCCCTACC 58.986 47.826 0.00 0.00 0.00 3.18
7950 9170 4.913784 TCCAAATCAGTACAAACCCCTAC 58.086 43.478 0.00 0.00 0.00 3.18
7952 9172 4.407365 CTTCCAAATCAGTACAAACCCCT 58.593 43.478 0.00 0.00 0.00 4.79
7954 9174 3.572255 TGCTTCCAAATCAGTACAAACCC 59.428 43.478 0.00 0.00 0.00 4.11
7957 9177 5.843673 TGTTGCTTCCAAATCAGTACAAA 57.156 34.783 0.00 0.00 31.68 2.83
7958 9178 5.843673 TTGTTGCTTCCAAATCAGTACAA 57.156 34.783 0.00 0.00 31.68 2.41
7959 9179 6.403866 AATTGTTGCTTCCAAATCAGTACA 57.596 33.333 0.00 0.00 31.68 2.90
7960 9180 6.922957 TCAAATTGTTGCTTCCAAATCAGTAC 59.077 34.615 0.00 0.00 34.50 2.73
7961 9181 7.048629 TCAAATTGTTGCTTCCAAATCAGTA 57.951 32.000 0.00 0.00 34.50 2.74
7963 9183 6.847956 TTCAAATTGTTGCTTCCAAATCAG 57.152 33.333 0.00 0.00 34.50 2.90
7965 9185 6.138088 GCTTTCAAATTGTTGCTTCCAAATC 58.862 36.000 0.00 0.00 34.50 2.17
7966 9186 5.589452 TGCTTTCAAATTGTTGCTTCCAAAT 59.411 32.000 0.00 0.00 34.50 2.32
7967 9187 4.940046 TGCTTTCAAATTGTTGCTTCCAAA 59.060 33.333 0.00 0.00 34.50 3.28
7968 9188 4.511527 TGCTTTCAAATTGTTGCTTCCAA 58.488 34.783 0.00 0.00 34.50 3.53
7969 9189 4.134379 TGCTTTCAAATTGTTGCTTCCA 57.866 36.364 0.00 0.00 34.50 3.53
7970 9190 5.678132 ATTGCTTTCAAATTGTTGCTTCC 57.322 34.783 0.00 0.00 35.56 3.46
7971 9191 6.488817 ACAATTGCTTTCAAATTGTTGCTTC 58.511 32.000 5.05 0.00 33.93 3.86
7972 9192 6.439675 ACAATTGCTTTCAAATTGTTGCTT 57.560 29.167 5.05 0.00 33.93 3.91
7973 9193 5.007921 GGACAATTGCTTTCAAATTGTTGCT 59.992 36.000 13.89 0.00 35.79 3.91
7974 9194 5.007921 AGGACAATTGCTTTCAAATTGTTGC 59.992 36.000 13.89 4.71 35.79 4.17
7975 9195 6.607735 AGGACAATTGCTTTCAAATTGTTG 57.392 33.333 13.89 2.09 35.79 3.33
8011 10061 4.469586 TGATGTGGTAGGTTGAATGAGCTA 59.530 41.667 0.00 0.00 0.00 3.32
8043 10093 1.660560 CCAAGCTCATTTGGGGCTCG 61.661 60.000 0.00 0.00 43.16 5.03
8075 10176 1.482621 CGCTTGGACGATCATGACCG 61.483 60.000 8.25 8.25 34.06 4.79
8089 10190 1.841663 CGTGGTTTCCTCACCGCTTG 61.842 60.000 2.16 0.00 44.10 4.01
8096 10197 2.280524 CGTGGCGTGGTTTCCTCA 60.281 61.111 0.00 0.00 0.00 3.86
8119 10369 0.168788 GGCACATCGTCACCATGTTG 59.831 55.000 0.00 0.00 31.83 3.33
8125 10375 1.808390 GTACGGGCACATCGTCACC 60.808 63.158 0.00 0.00 41.38 4.02
8126 10376 2.156446 CGTACGGGCACATCGTCAC 61.156 63.158 7.57 0.00 41.38 3.67
8215 10465 2.362736 TCCTTCACAGATTGCTCATGC 58.637 47.619 0.00 0.00 40.20 4.06
8216 10466 3.243101 GCATCCTTCACAGATTGCTCATG 60.243 47.826 0.00 0.00 0.00 3.07
8217 10467 2.950309 GCATCCTTCACAGATTGCTCAT 59.050 45.455 0.00 0.00 0.00 2.90
8218 10468 2.290450 TGCATCCTTCACAGATTGCTCA 60.290 45.455 0.00 0.00 32.05 4.26
8219 10469 2.362736 TGCATCCTTCACAGATTGCTC 58.637 47.619 0.00 0.00 32.05 4.26
8220 10470 2.502142 TGCATCCTTCACAGATTGCT 57.498 45.000 0.00 0.00 32.05 3.91
8221 10471 2.426024 ACATGCATCCTTCACAGATTGC 59.574 45.455 0.00 0.00 0.00 3.56
8222 10472 4.157105 TCAACATGCATCCTTCACAGATTG 59.843 41.667 0.00 0.00 0.00 2.67
8223 10473 4.338012 TCAACATGCATCCTTCACAGATT 58.662 39.130 0.00 0.00 0.00 2.40
8224 10474 3.959293 TCAACATGCATCCTTCACAGAT 58.041 40.909 0.00 0.00 0.00 2.90
8225 10475 3.421919 TCAACATGCATCCTTCACAGA 57.578 42.857 0.00 0.00 0.00 3.41
8226 10476 3.253921 TGTTCAACATGCATCCTTCACAG 59.746 43.478 0.00 0.00 0.00 3.66
8230 10480 3.503363 TCAGTGTTCAACATGCATCCTTC 59.497 43.478 0.00 0.00 0.00 3.46
8257 10507 3.130869 TGCTTCCATGATGCAATAACCAC 59.869 43.478 0.00 0.00 39.22 4.16
8258 10508 3.363627 TGCTTCCATGATGCAATAACCA 58.636 40.909 0.00 0.00 39.22 3.67
8259 10509 3.382546 ACTGCTTCCATGATGCAATAACC 59.617 43.478 0.00 0.00 41.04 2.85
8260 10510 4.644103 ACTGCTTCCATGATGCAATAAC 57.356 40.909 0.00 0.00 41.04 1.89
8261 10511 6.964807 ATAACTGCTTCCATGATGCAATAA 57.035 33.333 0.00 0.00 41.04 1.40
8262 10512 6.741109 CAATAACTGCTTCCATGATGCAATA 58.259 36.000 0.00 0.00 41.04 1.90
8263 10513 5.597806 CAATAACTGCTTCCATGATGCAAT 58.402 37.500 0.00 0.00 41.04 3.56
8264 10514 5.001237 CAATAACTGCTTCCATGATGCAA 57.999 39.130 0.00 0.00 41.04 4.08
8265 10515 4.642445 CAATAACTGCTTCCATGATGCA 57.358 40.909 0.00 0.41 39.73 3.96
8278 10528 7.035840 AGCCTAAATTGAGATGCAATAACTG 57.964 36.000 0.00 0.00 46.25 3.16
8279 10529 7.995488 AGTAGCCTAAATTGAGATGCAATAACT 59.005 33.333 0.00 0.00 46.25 2.24
8280 10530 8.159344 AGTAGCCTAAATTGAGATGCAATAAC 57.841 34.615 0.00 0.00 46.25 1.89
8281 10531 8.752005 AAGTAGCCTAAATTGAGATGCAATAA 57.248 30.769 0.00 0.00 46.25 1.40
8284 10534 8.752005 AATAAGTAGCCTAAATTGAGATGCAA 57.248 30.769 0.00 0.00 41.53 4.08
8285 10535 9.845740 TTAATAAGTAGCCTAAATTGAGATGCA 57.154 29.630 0.00 0.00 0.00 3.96
8371 10621 9.326413 GCTCTCCTAGTAATTTGCAAAATACTA 57.674 33.333 31.08 31.08 36.37 1.82
8372 10622 7.283354 GGCTCTCCTAGTAATTTGCAAAATACT 59.717 37.037 31.93 31.93 38.03 2.12
8373 10623 7.418408 GGCTCTCCTAGTAATTTGCAAAATAC 58.582 38.462 23.90 23.90 0.00 1.89
8385 10635 2.831366 CGCGCGGCTCTCCTAGTAA 61.831 63.158 24.84 0.00 0.00 2.24
8398 10648 0.833264 CAATCATGTTTTAGCGCGCG 59.167 50.000 28.44 28.44 0.00 6.86
8399 10649 2.172593 TCAATCATGTTTTAGCGCGC 57.827 45.000 26.66 26.66 0.00 6.86
8400 10650 4.211164 TCCTATCAATCATGTTTTAGCGCG 59.789 41.667 0.00 0.00 0.00 6.86
8401 10651 5.673337 TCCTATCAATCATGTTTTAGCGC 57.327 39.130 0.00 0.00 0.00 5.92
8472 10738 6.308015 TGCAACCTGGTTAGAGTATTATGT 57.692 37.500 12.53 0.00 0.00 2.29
8503 10769 8.786898 TCTGGTTATTTCTGACAAGAGAAATTG 58.213 33.333 12.42 0.00 46.14 2.32
8508 10774 8.041323 GGTAATCTGGTTATTTCTGACAAGAGA 58.959 37.037 0.00 0.00 29.80 3.10
8548 10814 1.065926 TGACTCATGCAACCTGGCTAG 60.066 52.381 0.00 0.00 34.04 3.42
8571 10837 9.262358 GGTAAACAGATCTGGCTAATTAAGTAG 57.738 37.037 26.08 5.58 34.19 2.57
8576 10842 6.591935 CAGGGTAAACAGATCTGGCTAATTA 58.408 40.000 26.08 13.44 34.19 1.40
8578 10844 4.687219 GCAGGGTAAACAGATCTGGCTAAT 60.687 45.833 26.08 9.87 34.19 1.73
8579 10845 3.370527 GCAGGGTAAACAGATCTGGCTAA 60.371 47.826 26.08 6.46 34.19 3.09
8580 10846 2.170607 GCAGGGTAAACAGATCTGGCTA 59.829 50.000 26.08 13.78 34.19 3.93
8581 10847 1.065126 GCAGGGTAAACAGATCTGGCT 60.065 52.381 26.08 14.76 34.19 4.75
8582 10848 1.340017 TGCAGGGTAAACAGATCTGGC 60.340 52.381 26.08 16.69 34.19 4.85
8583 10849 2.787473 TGCAGGGTAAACAGATCTGG 57.213 50.000 26.08 8.94 34.19 3.86
8584 10850 6.949352 ATAATTGCAGGGTAAACAGATCTG 57.051 37.500 21.37 21.37 0.00 2.90
8585 10851 9.726438 GTATATAATTGCAGGGTAAACAGATCT 57.274 33.333 0.00 0.00 0.00 2.75
8612 10918 5.506708 TCATGTACAAGCTAGTCTCCTACA 58.493 41.667 0.00 0.24 0.00 2.74
8667 10994 1.070601 CACCACTCACTCACCACATCA 59.929 52.381 0.00 0.00 0.00 3.07
8679 11006 1.620323 CTCTGTCATGGTCACCACTCA 59.380 52.381 0.00 0.00 35.80 3.41
8680 11007 1.674221 GCTCTGTCATGGTCACCACTC 60.674 57.143 0.00 0.00 35.80 3.51
8681 11008 0.322975 GCTCTGTCATGGTCACCACT 59.677 55.000 0.00 0.00 35.80 4.00
8682 11009 0.322975 AGCTCTGTCATGGTCACCAC 59.677 55.000 0.00 0.00 35.80 4.16
8816 11150 1.764134 TCGTGTGGTTGGTTTCCTAGT 59.236 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.