Multiple sequence alignment - TraesCS2A01G011800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G011800 chr2A 100.000 2724 0 0 1 2724 4362222 4364945 0.000000e+00 5031.0
1 TraesCS2A01G011800 chr2A 98.030 660 13 0 1456 2115 4354411 4355070 0.000000e+00 1147.0
2 TraesCS2A01G011800 chr2A 78.788 1221 122 59 764 1916 4384293 4385444 0.000000e+00 693.0
3 TraesCS2A01G011800 chr2A 81.517 422 54 10 1928 2337 4348002 4348411 2.620000e-85 326.0
4 TraesCS2A01G011800 chr2A 99.425 174 1 0 2117 2290 4355160 4355333 1.570000e-82 316.0
5 TraesCS2A01G011800 chr2A 78.750 560 47 31 888 1416 4353892 4354410 2.630000e-80 309.0
6 TraesCS2A01G011800 chr2A 85.259 251 31 5 1928 2172 4399983 4400233 1.250000e-63 254.0
7 TraesCS2A01G011800 chr2A 90.625 128 6 3 764 886 4353735 4353861 6.030000e-37 165.0
8 TraesCS2A01G011800 chr7D 94.190 654 36 2 1 652 576644383 576645036 0.000000e+00 996.0
9 TraesCS2A01G011800 chr7D 92.966 654 44 1 1 652 145919400 145920053 0.000000e+00 952.0
10 TraesCS2A01G011800 chr7D 92.945 652 45 1 1 652 616465260 616465910 0.000000e+00 948.0
11 TraesCS2A01G011800 chr2D 93.588 655 38 3 1 651 276936099 276936753 0.000000e+00 974.0
12 TraesCS2A01G011800 chr2D 93.702 651 34 6 1 647 285349661 285349014 0.000000e+00 968.0
13 TraesCS2A01G011800 chr2D 83.183 1106 93 44 764 1816 5920845 5921910 0.000000e+00 926.0
14 TraesCS2A01G011800 chr2D 86.801 644 51 17 1297 1917 5915140 5915772 0.000000e+00 688.0
15 TraesCS2A01G011800 chr2D 90.449 356 26 7 1986 2341 5915789 5916136 1.910000e-126 462.0
16 TraesCS2A01G011800 chr2D 83.730 252 32 4 2086 2337 5902111 5902353 2.110000e-56 230.0
17 TraesCS2A01G011800 chr2D 81.224 245 26 10 903 1130 5914815 5915056 2.160000e-41 180.0
18 TraesCS2A01G011800 chr2D 93.182 88 6 0 1820 1907 5921981 5922068 2.200000e-26 130.0
19 TraesCS2A01G011800 chr2D 87.097 93 9 2 2621 2713 5916132 5916221 4.800000e-18 102.0
20 TraesCS2A01G011800 chr2D 95.349 43 1 1 726 768 5920779 5920820 1.750000e-07 67.6
21 TraesCS2A01G011800 chr1D 93.364 648 40 3 1 647 444890841 444890196 0.000000e+00 955.0
22 TraesCS2A01G011800 chr5A 93.210 648 43 1 1 647 598826873 598827520 0.000000e+00 952.0
23 TraesCS2A01G011800 chr5A 85.256 156 13 4 2467 2622 538017890 538018035 4.700000e-33 152.0
24 TraesCS2A01G011800 chr3A 93.199 647 43 1 1 647 686844760 686844115 0.000000e+00 950.0
25 TraesCS2A01G011800 chr7A 92.934 651 45 1 1 650 676363158 676362508 0.000000e+00 946.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G011800 chr2A 4362222 4364945 2723 False 5031.000000 5031 100.000000 1 2724 1 chr2A.!!$F2 2723
1 TraesCS2A01G011800 chr2A 4384293 4385444 1151 False 693.000000 693 78.788000 764 1916 1 chr2A.!!$F3 1152
2 TraesCS2A01G011800 chr2A 4353735 4355333 1598 False 484.250000 1147 91.707500 764 2290 4 chr2A.!!$F5 1526
3 TraesCS2A01G011800 chr7D 576644383 576645036 653 False 996.000000 996 94.190000 1 652 1 chr7D.!!$F2 651
4 TraesCS2A01G011800 chr7D 145919400 145920053 653 False 952.000000 952 92.966000 1 652 1 chr7D.!!$F1 651
5 TraesCS2A01G011800 chr7D 616465260 616465910 650 False 948.000000 948 92.945000 1 652 1 chr7D.!!$F3 651
6 TraesCS2A01G011800 chr2D 276936099 276936753 654 False 974.000000 974 93.588000 1 651 1 chr2D.!!$F2 650
7 TraesCS2A01G011800 chr2D 285349014 285349661 647 True 968.000000 968 93.702000 1 647 1 chr2D.!!$R1 646
8 TraesCS2A01G011800 chr2D 5920779 5922068 1289 False 374.533333 926 90.571333 726 1907 3 chr2D.!!$F4 1181
9 TraesCS2A01G011800 chr2D 5914815 5916221 1406 False 358.000000 688 86.392750 903 2713 4 chr2D.!!$F3 1810
10 TraesCS2A01G011800 chr1D 444890196 444890841 645 True 955.000000 955 93.364000 1 647 1 chr1D.!!$R1 646
11 TraesCS2A01G011800 chr5A 598826873 598827520 647 False 952.000000 952 93.210000 1 647 1 chr5A.!!$F2 646
12 TraesCS2A01G011800 chr3A 686844115 686844760 645 True 950.000000 950 93.199000 1 647 1 chr3A.!!$R1 646
13 TraesCS2A01G011800 chr7A 676362508 676363158 650 True 946.000000 946 92.934000 1 650 1 chr7A.!!$R1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 1019 1.068472 CGAGTTATAGCGCCGGATCTT 60.068 52.381 5.05 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2433 2754 0.106967 GCCCACCCTCTCTTTGATCC 60.107 60.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 136 3.652274 AGGTTTTCAAATCATGGCAACG 58.348 40.909 0.00 0.00 42.51 4.10
143 145 5.650266 TCAAATCATGGCAACGGTAGTAAAT 59.350 36.000 0.00 0.00 42.51 1.40
173 175 2.294233 ACATGGCAACTGCTTAGTGTTG 59.706 45.455 12.95 12.95 44.33 3.33
200 202 4.261614 GGTGGCAACCTCTAAAGTTTTCAG 60.262 45.833 1.77 0.00 43.84 3.02
284 287 1.277273 CTGGCACTTGACCTGAGATGA 59.723 52.381 0.00 0.00 0.00 2.92
377 380 4.336993 ACTGCAGTTAAACGGACATTGAAA 59.663 37.500 15.25 0.00 0.00 2.69
388 391 2.084546 GACATTGAAAAGGGTCCGGAG 58.915 52.381 3.06 0.00 30.50 4.63
389 392 1.423921 ACATTGAAAAGGGTCCGGAGT 59.576 47.619 3.06 0.00 0.00 3.85
418 421 3.376078 GGGGACGCGTGGTGACTA 61.376 66.667 20.70 0.00 0.00 2.59
562 569 4.688511 AGTTGTTTTGCTCACACGTAAA 57.311 36.364 0.00 0.00 0.00 2.01
564 571 4.083217 AGTTGTTTTGCTCACACGTAAACA 60.083 37.500 6.47 6.47 37.04 2.83
568 575 4.624336 TTTGCTCACACGTAAACATGTT 57.376 36.364 4.92 4.92 0.00 2.71
625 632 1.205460 AGACCCCTTAACGCCCACAT 61.205 55.000 0.00 0.00 0.00 3.21
652 659 7.218773 GTGTGACATTTATCGTCATCCAAAATG 59.781 37.037 0.00 0.00 44.70 2.32
654 661 7.754924 GTGACATTTATCGTCATCCAAAATGTT 59.245 33.333 11.67 0.00 45.72 2.71
655 662 8.303156 TGACATTTATCGTCATCCAAAATGTTT 58.697 29.630 11.67 0.00 45.72 2.83
656 663 9.781834 GACATTTATCGTCATCCAAAATGTTTA 57.218 29.630 11.67 0.00 45.72 2.01
661 668 9.781834 TTATCGTCATCCAAAATGTTTAATGTC 57.218 29.630 0.00 0.00 0.00 3.06
662 669 7.447374 TCGTCATCCAAAATGTTTAATGTCT 57.553 32.000 0.00 0.00 0.00 3.41
663 670 7.526608 TCGTCATCCAAAATGTTTAATGTCTC 58.473 34.615 0.00 0.00 0.00 3.36
664 671 7.174080 TCGTCATCCAAAATGTTTAATGTCTCA 59.826 33.333 0.00 0.00 0.00 3.27
665 672 7.807433 CGTCATCCAAAATGTTTAATGTCTCAA 59.193 33.333 0.00 0.00 0.00 3.02
666 673 9.643693 GTCATCCAAAATGTTTAATGTCTCAAT 57.356 29.630 0.00 0.00 0.00 2.57
705 712 9.967451 TGTTTAATGTCTCAATAATTGGTAGGA 57.033 29.630 0.00 0.00 0.00 2.94
710 717 9.927081 AATGTCTCAATAATTGGTAGGATCTTT 57.073 29.630 0.00 0.00 0.00 2.52
711 718 8.737168 TGTCTCAATAATTGGTAGGATCTTTG 57.263 34.615 0.00 0.00 0.00 2.77
712 719 8.328758 TGTCTCAATAATTGGTAGGATCTTTGT 58.671 33.333 0.00 0.00 0.00 2.83
713 720 9.178758 GTCTCAATAATTGGTAGGATCTTTGTT 57.821 33.333 0.00 0.00 0.00 2.83
714 721 9.753674 TCTCAATAATTGGTAGGATCTTTGTTT 57.246 29.630 0.00 0.00 0.00 2.83
720 727 7.839680 ATTGGTAGGATCTTTGTTTTTGACT 57.160 32.000 0.00 0.00 0.00 3.41
721 728 6.877611 TGGTAGGATCTTTGTTTTTGACTC 57.122 37.500 0.00 0.00 0.00 3.36
722 729 5.468746 TGGTAGGATCTTTGTTTTTGACTCG 59.531 40.000 0.00 0.00 0.00 4.18
723 730 5.699458 GGTAGGATCTTTGTTTTTGACTCGA 59.301 40.000 0.00 0.00 0.00 4.04
724 731 5.931441 AGGATCTTTGTTTTTGACTCGAG 57.069 39.130 11.84 11.84 0.00 4.04
753 760 2.087646 CAGGGGCTCAAGACTAAAAGC 58.912 52.381 0.00 0.00 0.00 3.51
767 802 5.120830 AGACTAAAAGCTGCGTGATAACTTG 59.879 40.000 0.00 0.00 0.00 3.16
879 926 9.780413 GAGAAAAATAAGAAGCAAATCGATCTT 57.220 29.630 0.00 0.00 36.24 2.40
898 973 6.466413 CGATCTTCCTAGTTAATTCTATCGCG 59.534 42.308 0.00 0.00 0.00 5.87
944 1019 1.068472 CGAGTTATAGCGCCGGATCTT 60.068 52.381 5.05 0.00 0.00 2.40
969 1044 5.105554 CCTCCTCTCGAAACTCCCATATATG 60.106 48.000 5.68 5.68 0.00 1.78
972 1047 6.433404 TCCTCTCGAAACTCCCATATATGTAC 59.567 42.308 11.73 0.00 0.00 2.90
985 1064 5.872070 CCATATATGTACACACACACACACA 59.128 40.000 11.73 0.00 37.54 3.72
1030 1113 9.424319 CAAGCAATCTTGTAGTAGAAGTAGAAA 57.576 33.333 6.92 0.00 43.55 2.52
1057 1162 0.884259 CGACCATGGACAAGCACACA 60.884 55.000 21.47 0.00 0.00 3.72
1097 1202 0.535797 CCTGCTGTCTCTGCATCTCA 59.464 55.000 0.00 0.00 37.65 3.27
1101 1206 2.027469 TGCTGTCTCTGCATCTCATGTT 60.027 45.455 0.00 0.00 33.63 2.71
1116 1221 1.899437 ATGTTCTCCGCCACCATCGT 61.899 55.000 0.00 0.00 0.00 3.73
1138 1247 8.546597 TCGTGCAATGTAAGTATATATGCATT 57.453 30.769 3.54 2.12 32.33 3.56
1159 1270 7.748683 TGCATTAAAGTTAACACTTCTATTGCG 59.251 33.333 8.61 0.00 42.89 4.85
1164 1275 8.556213 AAAGTTAACACTTCTATTGCGGATTA 57.444 30.769 8.61 0.00 42.89 1.75
1172 1283 6.634436 CACTTCTATTGCGGATTAATCTTTGC 59.366 38.462 14.95 15.58 0.00 3.68
1180 1295 4.433022 GCGGATTAATCTTTGCGAGATACG 60.433 45.833 14.95 6.68 44.41 3.06
1205 1320 4.882671 TGTCTTTCAAGCTCAACAAGTC 57.117 40.909 0.00 0.00 0.00 3.01
1212 1327 1.082496 GCTCAACAAGTCAGTGCGC 60.082 57.895 0.00 0.00 0.00 6.09
1229 1344 1.182673 CGCATGCACGTGCTATTTTC 58.817 50.000 37.59 20.08 42.88 2.29
1254 1370 4.843516 ACTTCTCTCTTCTGTTTCTCCCAT 59.156 41.667 0.00 0.00 0.00 4.00
1294 1412 6.899393 TGTCTTTAATCCAAGCTCAACAAT 57.101 33.333 0.00 0.00 0.00 2.71
1299 1417 8.020819 TCTTTAATCCAAGCTCAACAATTTACG 58.979 33.333 0.00 0.00 0.00 3.18
1316 1434 4.424061 TTACGTCTTACTATGCACGTGT 57.576 40.909 18.38 0.00 44.79 4.49
1318 1436 3.751621 ACGTCTTACTATGCACGTGTAC 58.248 45.455 18.38 1.32 43.57 2.90
1322 1440 5.337554 GTCTTACTATGCACGTGTACATCA 58.662 41.667 18.38 6.33 0.00 3.07
1332 1450 3.968096 CACGTGTACATCAAGCACTTTTG 59.032 43.478 7.58 0.00 0.00 2.44
1371 1492 5.495926 TGATTTCTGCTTCTCTCTTTCCT 57.504 39.130 0.00 0.00 0.00 3.36
1386 1507 3.260380 TCTTTCCTTCTCTTGCCTGAGAG 59.740 47.826 6.00 4.62 43.05 3.20
1415 1539 8.692615 GTTTATCGCTTTTAACAAATCCGAAAA 58.307 29.630 0.00 0.00 32.58 2.29
1603 1741 0.464452 ACCGCTGCTACCTAACCATC 59.536 55.000 0.00 0.00 0.00 3.51
1616 1754 1.647545 AACCATCGACGCATGCAAGG 61.648 55.000 19.57 11.46 0.00 3.61
1652 1790 2.486548 CCACCCTTGTCTTCTTCGGAAA 60.487 50.000 0.00 0.00 33.12 3.13
1657 1795 4.023963 CCCTTGTCTTCTTCGGAAAACTTC 60.024 45.833 0.00 0.00 33.12 3.01
2312 2633 7.390440 GGCATATATATGTAATGTGTGGTGTGT 59.610 37.037 21.10 0.00 36.11 3.72
2313 2634 8.229811 GCATATATATGTAATGTGTGGTGTGTG 58.770 37.037 21.10 0.00 36.11 3.82
2314 2635 8.720562 CATATATATGTAATGTGTGGTGTGTGG 58.279 37.037 13.69 0.00 0.00 4.17
2333 2654 6.983307 TGTGTGGAAACAAGTTTGAAATATGG 59.017 34.615 2.45 0.00 46.06 2.74
2337 2658 3.866883 ACAAGTTTGAAATATGGCCCG 57.133 42.857 0.00 0.00 0.00 6.13
2338 2659 2.094234 ACAAGTTTGAAATATGGCCCGC 60.094 45.455 0.00 0.00 0.00 6.13
2339 2660 1.111277 AGTTTGAAATATGGCCCGCC 58.889 50.000 0.00 0.00 0.00 6.13
2340 2661 1.111277 GTTTGAAATATGGCCCGCCT 58.889 50.000 7.35 0.00 36.94 5.52
2341 2662 1.480545 GTTTGAAATATGGCCCGCCTT 59.519 47.619 7.35 3.15 36.94 4.35
2342 2663 1.398692 TTGAAATATGGCCCGCCTTC 58.601 50.000 7.35 3.06 36.94 3.46
2343 2664 0.550914 TGAAATATGGCCCGCCTTCT 59.449 50.000 7.35 0.00 36.94 2.85
2344 2665 1.064017 TGAAATATGGCCCGCCTTCTT 60.064 47.619 7.35 0.00 36.94 2.52
2345 2666 2.031870 GAAATATGGCCCGCCTTCTTT 58.968 47.619 7.35 6.03 36.94 2.52
2346 2667 1.692411 AATATGGCCCGCCTTCTTTC 58.308 50.000 7.35 0.00 36.94 2.62
2347 2668 0.535102 ATATGGCCCGCCTTCTTTCG 60.535 55.000 7.35 0.00 36.94 3.46
2348 2669 1.618876 TATGGCCCGCCTTCTTTCGA 61.619 55.000 7.35 0.00 36.94 3.71
2349 2670 2.359478 GGCCCGCCTTCTTTCGAA 60.359 61.111 0.00 0.00 0.00 3.71
2350 2671 1.749258 GGCCCGCCTTCTTTCGAAT 60.749 57.895 0.00 0.00 0.00 3.34
2351 2672 1.715862 GGCCCGCCTTCTTTCGAATC 61.716 60.000 0.00 0.00 0.00 2.52
2352 2673 1.715862 GCCCGCCTTCTTTCGAATCC 61.716 60.000 0.00 0.00 0.00 3.01
2353 2674 0.107654 CCCGCCTTCTTTCGAATCCT 60.108 55.000 0.00 0.00 0.00 3.24
2354 2675 1.009829 CCGCCTTCTTTCGAATCCTG 58.990 55.000 0.00 0.00 0.00 3.86
2355 2676 1.676014 CCGCCTTCTTTCGAATCCTGT 60.676 52.381 0.00 0.00 0.00 4.00
2356 2677 2.076863 CGCCTTCTTTCGAATCCTGTT 58.923 47.619 0.00 0.00 0.00 3.16
2357 2678 2.484264 CGCCTTCTTTCGAATCCTGTTT 59.516 45.455 0.00 0.00 0.00 2.83
2358 2679 3.682858 CGCCTTCTTTCGAATCCTGTTTA 59.317 43.478 0.00 0.00 0.00 2.01
2359 2680 4.332819 CGCCTTCTTTCGAATCCTGTTTAT 59.667 41.667 0.00 0.00 0.00 1.40
2360 2681 5.573146 GCCTTCTTTCGAATCCTGTTTATG 58.427 41.667 0.00 0.00 0.00 1.90
2361 2682 5.354234 GCCTTCTTTCGAATCCTGTTTATGA 59.646 40.000 0.00 0.00 0.00 2.15
2362 2683 6.128007 GCCTTCTTTCGAATCCTGTTTATGAA 60.128 38.462 0.00 0.00 0.00 2.57
2363 2684 7.574967 GCCTTCTTTCGAATCCTGTTTATGAAA 60.575 37.037 0.00 0.00 0.00 2.69
2364 2685 7.965107 CCTTCTTTCGAATCCTGTTTATGAAAG 59.035 37.037 0.00 5.65 41.14 2.62
2365 2686 6.842163 TCTTTCGAATCCTGTTTATGAAAGC 58.158 36.000 0.00 0.00 40.17 3.51
2366 2687 6.429692 TCTTTCGAATCCTGTTTATGAAAGCA 59.570 34.615 0.00 0.00 40.17 3.91
2367 2688 5.801350 TCGAATCCTGTTTATGAAAGCAG 57.199 39.130 0.00 0.00 41.98 4.24
2368 2689 5.487433 TCGAATCCTGTTTATGAAAGCAGA 58.513 37.500 3.87 0.00 44.27 4.26
2369 2690 5.582269 TCGAATCCTGTTTATGAAAGCAGAG 59.418 40.000 3.87 0.00 44.27 3.35
2370 2691 5.220739 CGAATCCTGTTTATGAAAGCAGAGG 60.221 44.000 3.87 0.00 44.27 3.69
2371 2692 4.640771 TCCTGTTTATGAAAGCAGAGGT 57.359 40.909 3.87 0.00 44.27 3.85
2372 2693 4.985538 TCCTGTTTATGAAAGCAGAGGTT 58.014 39.130 3.87 0.00 44.27 3.50
2373 2694 5.003804 TCCTGTTTATGAAAGCAGAGGTTC 58.996 41.667 3.87 0.00 44.27 3.62
2374 2695 4.156739 CCTGTTTATGAAAGCAGAGGTTCC 59.843 45.833 3.87 0.00 44.27 3.62
2375 2696 4.724399 TGTTTATGAAAGCAGAGGTTCCA 58.276 39.130 0.00 0.00 0.00 3.53
2376 2697 5.324409 TGTTTATGAAAGCAGAGGTTCCAT 58.676 37.500 0.00 0.00 0.00 3.41
2377 2698 5.774690 TGTTTATGAAAGCAGAGGTTCCATT 59.225 36.000 0.00 0.00 0.00 3.16
2378 2699 6.267471 TGTTTATGAAAGCAGAGGTTCCATTT 59.733 34.615 0.00 0.00 0.00 2.32
2379 2700 4.796038 ATGAAAGCAGAGGTTCCATTTG 57.204 40.909 0.00 0.00 0.00 2.32
2380 2701 2.892852 TGAAAGCAGAGGTTCCATTTGG 59.107 45.455 0.00 0.00 0.00 3.28
2381 2702 2.978156 AAGCAGAGGTTCCATTTGGA 57.022 45.000 0.00 0.00 43.73 3.53
2382 2703 2.503895 AGCAGAGGTTCCATTTGGAG 57.496 50.000 0.00 0.00 46.36 3.86
2383 2704 1.988107 AGCAGAGGTTCCATTTGGAGA 59.012 47.619 0.00 0.00 46.36 3.71
2384 2705 2.026449 AGCAGAGGTTCCATTTGGAGAG 60.026 50.000 0.00 0.00 46.36 3.20
2385 2706 2.363683 CAGAGGTTCCATTTGGAGAGC 58.636 52.381 0.00 1.98 46.36 4.09
2386 2707 2.026449 CAGAGGTTCCATTTGGAGAGCT 60.026 50.000 10.97 10.97 46.36 4.09
2387 2708 3.198635 CAGAGGTTCCATTTGGAGAGCTA 59.801 47.826 11.07 0.00 46.36 3.32
2388 2709 4.043596 AGAGGTTCCATTTGGAGAGCTAT 58.956 43.478 11.07 7.45 46.36 2.97
2389 2710 4.476479 AGAGGTTCCATTTGGAGAGCTATT 59.524 41.667 11.07 4.12 46.36 1.73
2390 2711 4.530875 AGGTTCCATTTGGAGAGCTATTG 58.469 43.478 0.00 0.00 46.36 1.90
2391 2712 3.633986 GGTTCCATTTGGAGAGCTATTGG 59.366 47.826 0.00 0.00 46.36 3.16
2392 2713 4.526970 GTTCCATTTGGAGAGCTATTGGA 58.473 43.478 0.00 0.00 46.36 3.53
2393 2714 5.136105 GTTCCATTTGGAGAGCTATTGGAT 58.864 41.667 0.00 0.00 46.36 3.41
2394 2715 4.722220 TCCATTTGGAGAGCTATTGGATG 58.278 43.478 0.00 0.00 39.78 3.51
2395 2716 4.413189 TCCATTTGGAGAGCTATTGGATGA 59.587 41.667 0.00 0.00 39.78 2.92
2396 2717 5.074102 TCCATTTGGAGAGCTATTGGATGAT 59.926 40.000 0.00 0.00 39.78 2.45
2397 2718 5.415077 CCATTTGGAGAGCTATTGGATGATC 59.585 44.000 0.00 0.00 37.39 2.92
2398 2719 3.949842 TGGAGAGCTATTGGATGATCG 57.050 47.619 0.00 0.00 0.00 3.69
2399 2720 3.500343 TGGAGAGCTATTGGATGATCGA 58.500 45.455 0.00 0.00 0.00 3.59
2400 2721 3.897505 TGGAGAGCTATTGGATGATCGAA 59.102 43.478 0.00 0.00 0.00 3.71
2401 2722 4.529769 TGGAGAGCTATTGGATGATCGAAT 59.470 41.667 7.78 7.78 0.00 3.34
2402 2723 5.012458 TGGAGAGCTATTGGATGATCGAATT 59.988 40.000 7.96 0.00 0.00 2.17
2403 2724 5.580297 GGAGAGCTATTGGATGATCGAATTC 59.420 44.000 7.96 0.89 0.00 2.17
2404 2725 6.357579 AGAGCTATTGGATGATCGAATTCT 57.642 37.500 7.96 6.25 0.00 2.40
2405 2726 7.363355 GGAGAGCTATTGGATGATCGAATTCTA 60.363 40.741 7.96 0.00 0.00 2.10
2406 2727 8.076910 AGAGCTATTGGATGATCGAATTCTAT 57.923 34.615 7.96 0.00 0.00 1.98
2407 2728 9.194972 AGAGCTATTGGATGATCGAATTCTATA 57.805 33.333 7.96 0.00 0.00 1.31
2408 2729 9.462174 GAGCTATTGGATGATCGAATTCTATAG 57.538 37.037 7.96 1.09 0.00 1.31
2409 2730 8.420222 AGCTATTGGATGATCGAATTCTATAGG 58.580 37.037 7.96 0.00 0.00 2.57
2410 2731 8.417106 GCTATTGGATGATCGAATTCTATAGGA 58.583 37.037 7.96 0.00 0.00 2.94
2413 2734 9.664332 ATTGGATGATCGAATTCTATAGGAAAG 57.336 33.333 3.52 0.00 37.49 2.62
2414 2735 8.422577 TGGATGATCGAATTCTATAGGAAAGA 57.577 34.615 3.52 0.00 37.49 2.52
2415 2736 8.307483 TGGATGATCGAATTCTATAGGAAAGAC 58.693 37.037 3.52 0.00 37.49 3.01
2416 2737 8.307483 GGATGATCGAATTCTATAGGAAAGACA 58.693 37.037 3.52 0.00 37.49 3.41
2417 2738 9.352784 GATGATCGAATTCTATAGGAAAGACAG 57.647 37.037 3.52 0.00 37.49 3.51
2418 2739 8.465273 TGATCGAATTCTATAGGAAAGACAGA 57.535 34.615 3.52 0.00 37.49 3.41
2419 2740 8.914011 TGATCGAATTCTATAGGAAAGACAGAA 58.086 33.333 3.52 0.00 37.49 3.02
2420 2741 9.921637 GATCGAATTCTATAGGAAAGACAGAAT 57.078 33.333 3.52 0.00 37.51 2.40
2441 2762 8.961294 AGAATAGTTCTGAGATTGGATCAAAG 57.039 34.615 0.00 0.00 38.91 2.77
2442 2763 8.766476 AGAATAGTTCTGAGATTGGATCAAAGA 58.234 33.333 0.00 0.00 38.91 2.52
2443 2764 8.961294 AATAGTTCTGAGATTGGATCAAAGAG 57.039 34.615 0.00 0.00 0.00 2.85
2444 2765 6.617782 AGTTCTGAGATTGGATCAAAGAGA 57.382 37.500 0.00 0.00 0.00 3.10
2445 2766 6.642430 AGTTCTGAGATTGGATCAAAGAGAG 58.358 40.000 0.00 0.00 0.00 3.20
2446 2767 5.611128 TCTGAGATTGGATCAAAGAGAGG 57.389 43.478 0.00 0.00 0.00 3.69
2447 2768 4.408270 TCTGAGATTGGATCAAAGAGAGGG 59.592 45.833 0.00 0.00 0.00 4.30
2448 2769 4.107072 TGAGATTGGATCAAAGAGAGGGT 58.893 43.478 0.00 0.00 0.00 4.34
2449 2770 4.080695 TGAGATTGGATCAAAGAGAGGGTG 60.081 45.833 0.00 0.00 0.00 4.61
2450 2771 3.201708 AGATTGGATCAAAGAGAGGGTGG 59.798 47.826 0.00 0.00 0.00 4.61
2451 2772 1.289160 TGGATCAAAGAGAGGGTGGG 58.711 55.000 0.00 0.00 0.00 4.61
2452 2773 0.106967 GGATCAAAGAGAGGGTGGGC 60.107 60.000 0.00 0.00 0.00 5.36
2453 2774 0.462759 GATCAAAGAGAGGGTGGGCG 60.463 60.000 0.00 0.00 0.00 6.13
2454 2775 1.915078 ATCAAAGAGAGGGTGGGCGG 61.915 60.000 0.00 0.00 0.00 6.13
2455 2776 2.529389 AAAGAGAGGGTGGGCGGT 60.529 61.111 0.00 0.00 0.00 5.68
2456 2777 2.154074 AAAGAGAGGGTGGGCGGTT 61.154 57.895 0.00 0.00 0.00 4.44
2457 2778 2.125766 AAAGAGAGGGTGGGCGGTTC 62.126 60.000 0.00 0.00 0.00 3.62
2458 2779 3.003763 GAGAGGGTGGGCGGTTCT 61.004 66.667 0.00 0.00 0.00 3.01
2459 2780 1.684734 GAGAGGGTGGGCGGTTCTA 60.685 63.158 0.00 0.00 0.00 2.10
2460 2781 1.003051 AGAGGGTGGGCGGTTCTAT 59.997 57.895 0.00 0.00 0.00 1.98
2461 2782 0.620700 AGAGGGTGGGCGGTTCTATT 60.621 55.000 0.00 0.00 0.00 1.73
2462 2783 0.179054 GAGGGTGGGCGGTTCTATTC 60.179 60.000 0.00 0.00 0.00 1.75
2463 2784 0.620700 AGGGTGGGCGGTTCTATTCT 60.621 55.000 0.00 0.00 0.00 2.40
2464 2785 0.255033 GGGTGGGCGGTTCTATTCTT 59.745 55.000 0.00 0.00 0.00 2.52
2465 2786 1.340697 GGGTGGGCGGTTCTATTCTTT 60.341 52.381 0.00 0.00 0.00 2.52
2466 2787 2.443416 GGTGGGCGGTTCTATTCTTTT 58.557 47.619 0.00 0.00 0.00 2.27
2467 2788 2.823747 GGTGGGCGGTTCTATTCTTTTT 59.176 45.455 0.00 0.00 0.00 1.94
2496 2817 9.460019 TTCAACTCCATTTCATTGATATACACA 57.540 29.630 0.00 0.00 31.45 3.72
2497 2818 8.892723 TCAACTCCATTTCATTGATATACACAC 58.107 33.333 0.00 0.00 0.00 3.82
2498 2819 8.676401 CAACTCCATTTCATTGATATACACACA 58.324 33.333 0.00 0.00 0.00 3.72
2499 2820 8.442632 ACTCCATTTCATTGATATACACACAG 57.557 34.615 0.00 0.00 0.00 3.66
2500 2821 7.500227 ACTCCATTTCATTGATATACACACAGG 59.500 37.037 0.00 0.00 0.00 4.00
2501 2822 7.345691 TCCATTTCATTGATATACACACAGGT 58.654 34.615 0.00 0.00 0.00 4.00
2502 2823 8.490311 TCCATTTCATTGATATACACACAGGTA 58.510 33.333 0.00 0.00 0.00 3.08
2503 2824 8.559536 CCATTTCATTGATATACACACAGGTAC 58.440 37.037 0.00 0.00 0.00 3.34
2504 2825 7.764695 TTTCATTGATATACACACAGGTACG 57.235 36.000 0.00 0.00 0.00 3.67
2505 2826 6.702716 TCATTGATATACACACAGGTACGA 57.297 37.500 0.00 0.00 0.00 3.43
2506 2827 6.735130 TCATTGATATACACACAGGTACGAG 58.265 40.000 0.00 0.00 0.00 4.18
2507 2828 6.544564 TCATTGATATACACACAGGTACGAGA 59.455 38.462 0.00 0.00 0.00 4.04
2508 2829 6.762702 TTGATATACACACAGGTACGAGAA 57.237 37.500 0.00 0.00 0.00 2.87
2509 2830 6.762702 TGATATACACACAGGTACGAGAAA 57.237 37.500 0.00 0.00 0.00 2.52
2510 2831 6.792326 TGATATACACACAGGTACGAGAAAG 58.208 40.000 0.00 0.00 0.00 2.62
2511 2832 2.150397 ACACACAGGTACGAGAAAGC 57.850 50.000 0.00 0.00 0.00 3.51
2512 2833 1.411246 ACACACAGGTACGAGAAAGCA 59.589 47.619 0.00 0.00 0.00 3.91
2513 2834 1.792949 CACACAGGTACGAGAAAGCAC 59.207 52.381 0.00 0.00 0.00 4.40
2514 2835 1.060713 CACAGGTACGAGAAAGCACG 58.939 55.000 0.00 0.00 0.00 5.34
2515 2836 0.956633 ACAGGTACGAGAAAGCACGA 59.043 50.000 0.00 0.00 32.30 4.35
2516 2837 1.338973 ACAGGTACGAGAAAGCACGAA 59.661 47.619 0.00 0.00 32.30 3.85
2517 2838 2.223876 ACAGGTACGAGAAAGCACGAAA 60.224 45.455 0.00 0.00 32.30 3.46
2518 2839 2.798283 CAGGTACGAGAAAGCACGAAAA 59.202 45.455 0.00 0.00 32.30 2.29
2519 2840 3.057734 AGGTACGAGAAAGCACGAAAAG 58.942 45.455 0.00 0.00 32.30 2.27
2520 2841 2.157085 GGTACGAGAAAGCACGAAAAGG 59.843 50.000 0.00 0.00 32.30 3.11
2521 2842 1.949465 ACGAGAAAGCACGAAAAGGT 58.051 45.000 0.00 0.00 32.30 3.50
2522 2843 3.102052 ACGAGAAAGCACGAAAAGGTA 57.898 42.857 0.00 0.00 32.30 3.08
2523 2844 3.460103 ACGAGAAAGCACGAAAAGGTAA 58.540 40.909 0.00 0.00 32.30 2.85
2524 2845 4.062991 ACGAGAAAGCACGAAAAGGTAAT 58.937 39.130 0.00 0.00 32.30 1.89
2525 2846 4.151867 ACGAGAAAGCACGAAAAGGTAATC 59.848 41.667 0.00 0.00 32.30 1.75
2526 2847 4.389077 CGAGAAAGCACGAAAAGGTAATCT 59.611 41.667 0.00 0.00 0.00 2.40
2527 2848 5.575606 CGAGAAAGCACGAAAAGGTAATCTA 59.424 40.000 0.00 0.00 0.00 1.98
2528 2849 6.237595 CGAGAAAGCACGAAAAGGTAATCTAG 60.238 42.308 0.00 0.00 0.00 2.43
2529 2850 6.698380 AGAAAGCACGAAAAGGTAATCTAGA 58.302 36.000 0.00 0.00 0.00 2.43
2530 2851 6.814146 AGAAAGCACGAAAAGGTAATCTAGAG 59.186 38.462 0.00 0.00 0.00 2.43
2531 2852 5.012328 AGCACGAAAAGGTAATCTAGAGG 57.988 43.478 0.00 0.00 0.00 3.69
2532 2853 3.556365 GCACGAAAAGGTAATCTAGAGGC 59.444 47.826 0.00 0.00 0.00 4.70
2533 2854 4.680975 GCACGAAAAGGTAATCTAGAGGCT 60.681 45.833 0.00 0.00 0.00 4.58
2534 2855 5.451520 GCACGAAAAGGTAATCTAGAGGCTA 60.452 44.000 0.00 0.00 0.00 3.93
2535 2856 6.210078 CACGAAAAGGTAATCTAGAGGCTAG 58.790 44.000 0.00 0.00 0.00 3.42
2536 2857 6.039493 CACGAAAAGGTAATCTAGAGGCTAGA 59.961 42.308 6.63 6.63 0.00 2.43
2537 2858 6.263617 ACGAAAAGGTAATCTAGAGGCTAGAG 59.736 42.308 9.70 0.00 0.00 2.43
2538 2859 6.413783 AAAAGGTAATCTAGAGGCTAGAGC 57.586 41.667 9.70 0.00 41.14 4.09
2539 2860 3.681593 AGGTAATCTAGAGGCTAGAGCG 58.318 50.000 9.70 0.00 43.26 5.03
2540 2861 3.073356 AGGTAATCTAGAGGCTAGAGCGT 59.927 47.826 9.70 0.00 43.26 5.07
2541 2862 4.286549 AGGTAATCTAGAGGCTAGAGCGTA 59.713 45.833 9.70 0.99 43.26 4.42
2542 2863 4.632688 GGTAATCTAGAGGCTAGAGCGTAG 59.367 50.000 9.70 0.00 43.26 3.51
2563 2884 4.061357 GCGAATAGCTCTAACCTTTCCT 57.939 45.455 0.00 0.00 44.04 3.36
2564 2885 4.052608 GCGAATAGCTCTAACCTTTCCTC 58.947 47.826 0.00 0.00 44.04 3.71
2565 2886 4.291783 CGAATAGCTCTAACCTTTCCTCG 58.708 47.826 0.00 0.00 0.00 4.63
2566 2887 4.623002 GAATAGCTCTAACCTTTCCTCGG 58.377 47.826 0.00 0.00 0.00 4.63
2567 2888 1.196012 AGCTCTAACCTTTCCTCGGG 58.804 55.000 0.00 0.00 0.00 5.14
2568 2889 0.178301 GCTCTAACCTTTCCTCGGGG 59.822 60.000 0.00 0.00 0.00 5.73
2569 2890 1.861982 CTCTAACCTTTCCTCGGGGA 58.138 55.000 0.00 0.00 40.36 4.81
2570 2891 1.757699 CTCTAACCTTTCCTCGGGGAG 59.242 57.143 3.09 0.00 43.29 4.30
2578 2899 4.089757 CCTCGGGGAGGGAAGGGA 62.090 72.222 0.00 0.00 45.43 4.20
2579 2900 2.444895 CTCGGGGAGGGAAGGGAG 60.445 72.222 0.00 0.00 0.00 4.30
2580 2901 2.950638 TCGGGGAGGGAAGGGAGA 60.951 66.667 0.00 0.00 0.00 3.71
2581 2902 2.287251 CGGGGAGGGAAGGGAGAT 59.713 66.667 0.00 0.00 0.00 2.75
2582 2903 1.002794 TCGGGGAGGGAAGGGAGATA 61.003 60.000 0.00 0.00 0.00 1.98
2583 2904 0.117340 CGGGGAGGGAAGGGAGATAT 59.883 60.000 0.00 0.00 0.00 1.63
2584 2905 1.662686 GGGGAGGGAAGGGAGATATG 58.337 60.000 0.00 0.00 0.00 1.78
2585 2906 1.152271 GGGGAGGGAAGGGAGATATGA 59.848 57.143 0.00 0.00 0.00 2.15
2586 2907 2.545810 GGGAGGGAAGGGAGATATGAG 58.454 57.143 0.00 0.00 0.00 2.90
2587 2908 2.545810 GGAGGGAAGGGAGATATGAGG 58.454 57.143 0.00 0.00 0.00 3.86
2588 2909 2.545810 GAGGGAAGGGAGATATGAGGG 58.454 57.143 0.00 0.00 0.00 4.30
2589 2910 1.876473 AGGGAAGGGAGATATGAGGGT 59.124 52.381 0.00 0.00 0.00 4.34
2590 2911 3.077695 GAGGGAAGGGAGATATGAGGGTA 59.922 52.174 0.00 0.00 0.00 3.69
2591 2912 3.078305 AGGGAAGGGAGATATGAGGGTAG 59.922 52.174 0.00 0.00 0.00 3.18
2592 2913 2.835156 GGAAGGGAGATATGAGGGTAGC 59.165 54.545 0.00 0.00 0.00 3.58
2593 2914 3.503227 GGAAGGGAGATATGAGGGTAGCT 60.503 52.174 0.00 0.00 0.00 3.32
2594 2915 4.264442 GGAAGGGAGATATGAGGGTAGCTA 60.264 50.000 0.00 0.00 0.00 3.32
2595 2916 5.524535 GAAGGGAGATATGAGGGTAGCTAT 58.475 45.833 0.00 0.00 0.00 2.97
2596 2917 6.354917 GGAAGGGAGATATGAGGGTAGCTATA 60.355 46.154 0.00 0.00 0.00 1.31
2597 2918 6.274322 AGGGAGATATGAGGGTAGCTATAG 57.726 45.833 0.00 0.00 0.00 1.31
2598 2919 4.830600 GGGAGATATGAGGGTAGCTATAGC 59.169 50.000 17.33 17.33 42.49 2.97
2608 2929 5.379732 GGGTAGCTATAGCCATATCGATC 57.620 47.826 21.17 0.00 46.88 3.69
2609 2930 5.074115 GGGTAGCTATAGCCATATCGATCT 58.926 45.833 21.17 1.12 46.88 2.75
2610 2931 5.536916 GGGTAGCTATAGCCATATCGATCTT 59.463 44.000 21.17 0.60 46.88 2.40
2611 2932 6.041069 GGGTAGCTATAGCCATATCGATCTTT 59.959 42.308 21.17 0.39 46.88 2.52
2612 2933 7.418025 GGGTAGCTATAGCCATATCGATCTTTT 60.418 40.741 21.17 0.00 46.88 2.27
2613 2934 7.436673 GGTAGCTATAGCCATATCGATCTTTTG 59.563 40.741 21.17 0.00 43.38 2.44
2614 2935 6.940739 AGCTATAGCCATATCGATCTTTTGT 58.059 36.000 21.17 0.00 43.38 2.83
2615 2936 8.067751 AGCTATAGCCATATCGATCTTTTGTA 57.932 34.615 21.17 0.00 43.38 2.41
2616 2937 8.194104 AGCTATAGCCATATCGATCTTTTGTAG 58.806 37.037 21.17 0.00 43.38 2.74
2617 2938 8.191446 GCTATAGCCATATCGATCTTTTGTAGA 58.809 37.037 14.13 0.00 34.19 2.59
2619 2940 8.994429 ATAGCCATATCGATCTTTTGTAGAAG 57.006 34.615 0.00 0.00 36.22 2.85
2620 2941 5.698545 AGCCATATCGATCTTTTGTAGAAGC 59.301 40.000 0.00 0.00 36.22 3.86
2621 2942 5.106908 GCCATATCGATCTTTTGTAGAAGCC 60.107 44.000 0.00 0.00 36.22 4.35
2622 2943 5.409826 CCATATCGATCTTTTGTAGAAGCCC 59.590 44.000 0.00 0.00 36.22 5.19
2623 2944 3.973206 TCGATCTTTTGTAGAAGCCCA 57.027 42.857 0.00 0.00 36.22 5.36
2629 2950 6.929049 CGATCTTTTGTAGAAGCCCATACATA 59.071 38.462 0.00 0.00 36.22 2.29
2635 2956 5.914033 TGTAGAAGCCCATACATAGTTGTC 58.086 41.667 0.00 0.00 37.28 3.18
2647 2968 5.705609 ACATAGTTGTCGCCTTTTGATTT 57.294 34.783 0.00 0.00 0.00 2.17
2648 2969 5.460646 ACATAGTTGTCGCCTTTTGATTTG 58.539 37.500 0.00 0.00 0.00 2.32
2652 2973 3.347958 TGTCGCCTTTTGATTTGTCAC 57.652 42.857 0.00 0.00 0.00 3.67
2658 2979 5.233902 TCGCCTTTTGATTTGTCACATTTTG 59.766 36.000 0.00 0.00 0.00 2.44
2662 2983 7.850492 GCCTTTTGATTTGTCACATTTTGTTAC 59.150 33.333 0.00 0.00 0.00 2.50
2707 3028 7.241042 TCTGGCTAAGTTCTATTGTACAACT 57.759 36.000 11.22 0.23 31.48 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 202 7.171678 GTCTGGTTTACTATAGTTGCCATGATC 59.828 40.741 11.40 5.04 0.00 2.92
377 380 0.912487 TTGCCATACTCCGGACCCTT 60.912 55.000 0.00 0.00 0.00 3.95
388 391 2.112815 GTCCCCGCAGTTGCCATAC 61.113 63.158 0.00 0.00 37.91 2.39
389 392 2.270850 GTCCCCGCAGTTGCCATA 59.729 61.111 0.00 0.00 37.91 2.74
431 434 4.189188 CTACCTCACGGTCCCGCG 62.189 72.222 5.47 0.00 44.21 6.46
527 534 2.169832 ACAACTAGCGCTCACATGTT 57.830 45.000 16.34 9.93 0.00 2.71
530 537 2.350772 GCAAAACAACTAGCGCTCACAT 60.351 45.455 16.34 0.00 0.00 3.21
535 542 1.264288 GTGAGCAAAACAACTAGCGCT 59.736 47.619 17.26 17.26 0.00 5.92
562 569 0.773644 AAGAGGACCAGCCAACATGT 59.226 50.000 0.00 0.00 40.02 3.21
564 571 2.237392 GTCTAAGAGGACCAGCCAACAT 59.763 50.000 0.00 0.00 40.02 2.71
568 575 1.267121 GTGTCTAAGAGGACCAGCCA 58.733 55.000 0.00 0.00 40.02 4.75
679 686 9.967451 TCCTACCAATTATTGAGACATTAAACA 57.033 29.630 6.50 0.00 0.00 2.83
684 691 9.927081 AAAGATCCTACCAATTATTGAGACATT 57.073 29.630 6.50 0.00 0.00 2.71
685 692 9.347240 CAAAGATCCTACCAATTATTGAGACAT 57.653 33.333 6.50 0.00 0.00 3.06
686 693 8.328758 ACAAAGATCCTACCAATTATTGAGACA 58.671 33.333 6.50 0.00 0.00 3.41
687 694 8.738645 ACAAAGATCCTACCAATTATTGAGAC 57.261 34.615 6.50 0.00 0.00 3.36
688 695 9.753674 AAACAAAGATCCTACCAATTATTGAGA 57.246 29.630 6.50 0.00 0.00 3.27
694 701 9.362151 AGTCAAAAACAAAGATCCTACCAATTA 57.638 29.630 0.00 0.00 0.00 1.40
695 702 8.250143 AGTCAAAAACAAAGATCCTACCAATT 57.750 30.769 0.00 0.00 0.00 2.32
696 703 7.308589 CGAGTCAAAAACAAAGATCCTACCAAT 60.309 37.037 0.00 0.00 0.00 3.16
697 704 6.017440 CGAGTCAAAAACAAAGATCCTACCAA 60.017 38.462 0.00 0.00 0.00 3.67
698 705 5.468746 CGAGTCAAAAACAAAGATCCTACCA 59.531 40.000 0.00 0.00 0.00 3.25
699 706 5.699458 TCGAGTCAAAAACAAAGATCCTACC 59.301 40.000 0.00 0.00 0.00 3.18
700 707 6.645415 TCTCGAGTCAAAAACAAAGATCCTAC 59.355 38.462 13.13 0.00 0.00 3.18
701 708 6.755206 TCTCGAGTCAAAAACAAAGATCCTA 58.245 36.000 13.13 0.00 0.00 2.94
702 709 5.611374 TCTCGAGTCAAAAACAAAGATCCT 58.389 37.500 13.13 0.00 0.00 3.24
703 710 5.696724 TCTCTCGAGTCAAAAACAAAGATCC 59.303 40.000 13.13 0.00 0.00 3.36
704 711 6.771188 TCTCTCGAGTCAAAAACAAAGATC 57.229 37.500 13.13 0.00 0.00 2.75
705 712 7.553881 TTTCTCTCGAGTCAAAAACAAAGAT 57.446 32.000 13.13 0.00 0.00 2.40
706 713 6.978343 TTTCTCTCGAGTCAAAAACAAAGA 57.022 33.333 13.13 0.48 0.00 2.52
707 714 7.008357 GGTTTTTCTCTCGAGTCAAAAACAAAG 59.992 37.037 35.73 19.39 44.83 2.77
708 715 6.804783 GGTTTTTCTCTCGAGTCAAAAACAAA 59.195 34.615 35.73 19.31 44.83 2.83
709 716 6.072397 TGGTTTTTCTCTCGAGTCAAAAACAA 60.072 34.615 35.73 30.79 44.83 2.83
710 717 5.413213 TGGTTTTTCTCTCGAGTCAAAAACA 59.587 36.000 35.73 29.76 44.83 2.83
711 718 5.875930 TGGTTTTTCTCTCGAGTCAAAAAC 58.124 37.500 32.37 32.37 43.40 2.43
712 719 5.065988 CCTGGTTTTTCTCTCGAGTCAAAAA 59.934 40.000 22.24 22.24 0.00 1.94
713 720 4.574828 CCTGGTTTTTCTCTCGAGTCAAAA 59.425 41.667 13.13 14.76 0.00 2.44
714 721 4.127171 CCTGGTTTTTCTCTCGAGTCAAA 58.873 43.478 13.13 9.63 0.00 2.69
715 722 3.494398 CCCTGGTTTTTCTCTCGAGTCAA 60.494 47.826 13.13 3.48 0.00 3.18
716 723 2.037251 CCCTGGTTTTTCTCTCGAGTCA 59.963 50.000 13.13 0.00 0.00 3.41
717 724 2.613223 CCCCTGGTTTTTCTCTCGAGTC 60.613 54.545 13.13 0.00 0.00 3.36
718 725 1.348036 CCCCTGGTTTTTCTCTCGAGT 59.652 52.381 13.13 0.00 0.00 4.18
719 726 1.946283 GCCCCTGGTTTTTCTCTCGAG 60.946 57.143 5.93 5.93 0.00 4.04
720 727 0.036306 GCCCCTGGTTTTTCTCTCGA 59.964 55.000 0.00 0.00 0.00 4.04
721 728 0.036875 AGCCCCTGGTTTTTCTCTCG 59.963 55.000 0.00 0.00 0.00 4.04
722 729 1.073923 TGAGCCCCTGGTTTTTCTCTC 59.926 52.381 0.00 0.00 0.00 3.20
723 730 1.149101 TGAGCCCCTGGTTTTTCTCT 58.851 50.000 0.00 0.00 0.00 3.10
724 731 1.889170 CTTGAGCCCCTGGTTTTTCTC 59.111 52.381 0.00 0.00 0.00 2.87
753 760 4.843984 CGGTTTTTACAAGTTATCACGCAG 59.156 41.667 0.00 0.00 0.00 5.18
767 802 4.879545 TGCCAGATTATCTCCGGTTTTTAC 59.120 41.667 0.00 0.00 0.00 2.01
879 926 6.430308 AGATCACGCGATAGAATTAACTAGGA 59.570 38.462 15.93 0.00 39.76 2.94
898 973 3.486263 CCGTGCGGGAAAGATCAC 58.514 61.111 2.15 0.00 38.47 3.06
944 1019 0.408309 TGGGAGTTTCGAGAGGAGGA 59.592 55.000 0.00 0.00 0.00 3.71
969 1044 3.259064 ACTCTTGTGTGTGTGTGTGTAC 58.741 45.455 0.00 0.00 0.00 2.90
972 1047 3.002791 AGAACTCTTGTGTGTGTGTGTG 58.997 45.455 0.00 0.00 0.00 3.82
985 1064 3.179443 TGCTGTGAACGAAGAACTCTT 57.821 42.857 0.00 0.00 39.23 2.85
1030 1113 0.756294 TGTCCATGGTCGTCTGTGTT 59.244 50.000 12.58 0.00 0.00 3.32
1097 1202 1.153369 CGATGGTGGCGGAGAACAT 60.153 57.895 0.00 0.00 0.00 2.71
1101 1206 4.451150 GCACGATGGTGGCGGAGA 62.451 66.667 10.06 0.00 44.54 3.71
1138 1247 8.556213 AATCCGCAATAGAAGTGTTAACTTTA 57.444 30.769 7.22 0.00 46.84 1.85
1146 1255 7.679638 GCAAAGATTAATCCGCAATAGAAGTGT 60.680 37.037 11.92 0.00 0.00 3.55
1147 1256 6.634436 GCAAAGATTAATCCGCAATAGAAGTG 59.366 38.462 11.92 0.00 0.00 3.16
1154 1265 3.876914 TCTCGCAAAGATTAATCCGCAAT 59.123 39.130 11.92 0.00 0.00 3.56
1156 1267 2.899976 TCTCGCAAAGATTAATCCGCA 58.100 42.857 11.92 3.81 0.00 5.69
1159 1270 6.764877 TTCGTATCTCGCAAAGATTAATCC 57.235 37.500 11.92 0.00 42.30 3.01
1164 1275 5.812642 AGACAATTCGTATCTCGCAAAGATT 59.187 36.000 4.09 0.00 42.30 2.40
1172 1283 5.289675 AGCTTGAAAGACAATTCGTATCTCG 59.710 40.000 0.00 0.00 37.88 4.04
1180 1295 6.268566 ACTTGTTGAGCTTGAAAGACAATTC 58.731 36.000 0.00 0.00 37.88 2.17
1212 1327 4.864916 AGTAGAAAATAGCACGTGCATG 57.135 40.909 39.21 3.82 45.16 4.06
1229 1344 5.478679 TGGGAGAAACAGAAGAGAGAAGTAG 59.521 44.000 0.00 0.00 0.00 2.57
1254 1370 5.740290 AAGACAAGGAGAAGATAAACCGA 57.260 39.130 0.00 0.00 0.00 4.69
1294 1412 4.797471 ACACGTGCATAGTAAGACGTAAA 58.203 39.130 17.22 0.00 42.86 2.01
1299 1417 5.337554 TGATGTACACGTGCATAGTAAGAC 58.662 41.667 17.22 0.75 36.05 3.01
1318 1436 9.630098 ACATAAATAAGACAAAAGTGCTTGATG 57.370 29.630 0.00 0.00 0.00 3.07
1322 1440 8.860088 AGGAACATAAATAAGACAAAAGTGCTT 58.140 29.630 0.00 0.00 0.00 3.91
1332 1450 9.508567 GCAGAAATCAAGGAACATAAATAAGAC 57.491 33.333 0.00 0.00 0.00 3.01
1371 1492 1.346062 ACTGCTCTCAGGCAAGAGAA 58.654 50.000 17.96 8.82 44.67 2.87
1386 1507 6.237201 CGGATTTGTTAAAAGCGATAAACTGC 60.237 38.462 0.00 0.00 32.32 4.40
1415 1539 7.965718 TCCAAAAGGAGATGATGAAACAATTT 58.034 30.769 0.00 0.00 0.00 1.82
1603 1741 1.154413 GTGTTCCTTGCATGCGTCG 60.154 57.895 14.09 3.38 0.00 5.12
1616 1754 1.880027 GGGTGGATTGTCACAGTGTTC 59.120 52.381 0.00 0.00 39.27 3.18
1652 1790 0.603975 GTCTCTGCCGCTTGGAAGTT 60.604 55.000 0.00 0.00 39.76 2.66
2312 2633 5.512232 GGGCCATATTTCAAACTTGTTTCCA 60.512 40.000 4.39 0.00 0.00 3.53
2313 2634 4.935205 GGGCCATATTTCAAACTTGTTTCC 59.065 41.667 4.39 0.00 0.00 3.13
2314 2635 4.625311 CGGGCCATATTTCAAACTTGTTTC 59.375 41.667 4.39 0.00 0.00 2.78
2341 2662 6.429692 TGCTTTCATAAACAGGATTCGAAAGA 59.570 34.615 0.00 0.00 39.99 2.52
2342 2663 6.611381 TGCTTTCATAAACAGGATTCGAAAG 58.389 36.000 0.00 0.00 40.35 2.62
2343 2664 6.429692 TCTGCTTTCATAAACAGGATTCGAAA 59.570 34.615 0.00 0.00 0.00 3.46
2344 2665 5.937540 TCTGCTTTCATAAACAGGATTCGAA 59.062 36.000 0.00 0.00 0.00 3.71
2345 2666 5.487433 TCTGCTTTCATAAACAGGATTCGA 58.513 37.500 0.00 0.00 0.00 3.71
2346 2667 5.220739 CCTCTGCTTTCATAAACAGGATTCG 60.221 44.000 0.00 0.00 0.00 3.34
2347 2668 5.649831 ACCTCTGCTTTCATAAACAGGATTC 59.350 40.000 0.00 0.00 0.00 2.52
2348 2669 5.574188 ACCTCTGCTTTCATAAACAGGATT 58.426 37.500 0.00 0.00 0.00 3.01
2349 2670 5.184892 ACCTCTGCTTTCATAAACAGGAT 57.815 39.130 0.00 0.00 0.00 3.24
2350 2671 4.640771 ACCTCTGCTTTCATAAACAGGA 57.359 40.909 0.00 0.00 0.00 3.86
2351 2672 4.156739 GGAACCTCTGCTTTCATAAACAGG 59.843 45.833 0.00 0.00 0.00 4.00
2352 2673 4.761739 TGGAACCTCTGCTTTCATAAACAG 59.238 41.667 0.00 0.00 0.00 3.16
2353 2674 4.724399 TGGAACCTCTGCTTTCATAAACA 58.276 39.130 0.00 0.00 0.00 2.83
2354 2675 5.904362 ATGGAACCTCTGCTTTCATAAAC 57.096 39.130 0.00 0.00 0.00 2.01
2355 2676 6.295236 CCAAATGGAACCTCTGCTTTCATAAA 60.295 38.462 0.00 0.00 37.39 1.40
2356 2677 5.185635 CCAAATGGAACCTCTGCTTTCATAA 59.814 40.000 0.00 0.00 37.39 1.90
2357 2678 4.706476 CCAAATGGAACCTCTGCTTTCATA 59.294 41.667 0.00 0.00 37.39 2.15
2358 2679 3.512724 CCAAATGGAACCTCTGCTTTCAT 59.487 43.478 0.00 0.00 37.39 2.57
2359 2680 2.892852 CCAAATGGAACCTCTGCTTTCA 59.107 45.455 0.00 0.00 37.39 2.69
2360 2681 3.157087 TCCAAATGGAACCTCTGCTTTC 58.843 45.455 0.00 0.00 42.18 2.62
2361 2682 3.160269 CTCCAAATGGAACCTCTGCTTT 58.840 45.455 3.35 0.00 44.91 3.51
2362 2683 2.376518 TCTCCAAATGGAACCTCTGCTT 59.623 45.455 3.35 0.00 44.91 3.91
2363 2684 1.988107 TCTCCAAATGGAACCTCTGCT 59.012 47.619 3.35 0.00 44.91 4.24
2364 2685 2.363683 CTCTCCAAATGGAACCTCTGC 58.636 52.381 3.35 0.00 44.91 4.26
2365 2686 2.026449 AGCTCTCCAAATGGAACCTCTG 60.026 50.000 3.35 0.00 44.91 3.35
2366 2687 2.273619 AGCTCTCCAAATGGAACCTCT 58.726 47.619 3.35 0.00 44.91 3.69
2367 2688 2.797177 AGCTCTCCAAATGGAACCTC 57.203 50.000 3.35 0.00 44.91 3.85
2368 2689 4.530875 CAATAGCTCTCCAAATGGAACCT 58.469 43.478 3.35 3.08 44.91 3.50
2369 2690 3.633986 CCAATAGCTCTCCAAATGGAACC 59.366 47.826 3.35 0.00 44.91 3.62
2370 2691 4.526970 TCCAATAGCTCTCCAAATGGAAC 58.473 43.478 3.35 0.00 44.91 3.62
2371 2692 4.860802 TCCAATAGCTCTCCAAATGGAA 57.139 40.909 3.35 0.00 44.91 3.53
2372 2693 4.413189 TCATCCAATAGCTCTCCAAATGGA 59.587 41.667 1.53 1.53 43.08 3.41
2373 2694 4.722220 TCATCCAATAGCTCTCCAAATGG 58.278 43.478 0.00 0.00 0.00 3.16
2374 2695 5.121925 CGATCATCCAATAGCTCTCCAAATG 59.878 44.000 0.00 0.00 0.00 2.32
2375 2696 5.012458 TCGATCATCCAATAGCTCTCCAAAT 59.988 40.000 0.00 0.00 0.00 2.32
2376 2697 4.344968 TCGATCATCCAATAGCTCTCCAAA 59.655 41.667 0.00 0.00 0.00 3.28
2377 2698 3.897505 TCGATCATCCAATAGCTCTCCAA 59.102 43.478 0.00 0.00 0.00 3.53
2378 2699 3.500343 TCGATCATCCAATAGCTCTCCA 58.500 45.455 0.00 0.00 0.00 3.86
2379 2700 4.527509 TTCGATCATCCAATAGCTCTCC 57.472 45.455 0.00 0.00 0.00 3.71
2380 2701 6.397272 AGAATTCGATCATCCAATAGCTCTC 58.603 40.000 0.00 0.00 0.00 3.20
2381 2702 6.357579 AGAATTCGATCATCCAATAGCTCT 57.642 37.500 0.00 0.00 0.00 4.09
2382 2703 9.462174 CTATAGAATTCGATCATCCAATAGCTC 57.538 37.037 4.16 0.00 0.00 4.09
2383 2704 8.420222 CCTATAGAATTCGATCATCCAATAGCT 58.580 37.037 4.16 0.00 0.00 3.32
2384 2705 8.417106 TCCTATAGAATTCGATCATCCAATAGC 58.583 37.037 4.16 0.00 0.00 2.97
2387 2708 9.664332 CTTTCCTATAGAATTCGATCATCCAAT 57.336 33.333 4.16 0.00 33.44 3.16
2388 2709 8.870116 TCTTTCCTATAGAATTCGATCATCCAA 58.130 33.333 4.16 0.00 33.44 3.53
2389 2710 8.307483 GTCTTTCCTATAGAATTCGATCATCCA 58.693 37.037 4.16 0.00 33.44 3.41
2390 2711 8.307483 TGTCTTTCCTATAGAATTCGATCATCC 58.693 37.037 4.16 0.00 33.44 3.51
2391 2712 9.352784 CTGTCTTTCCTATAGAATTCGATCATC 57.647 37.037 4.16 0.00 33.44 2.92
2392 2713 9.083422 TCTGTCTTTCCTATAGAATTCGATCAT 57.917 33.333 4.16 0.00 33.44 2.45
2393 2714 8.465273 TCTGTCTTTCCTATAGAATTCGATCA 57.535 34.615 4.16 0.00 33.44 2.92
2394 2715 9.921637 ATTCTGTCTTTCCTATAGAATTCGATC 57.078 33.333 4.16 0.00 35.25 3.69
2416 2737 8.766476 TCTTTGATCCAATCTCAGAACTATTCT 58.234 33.333 0.00 0.00 41.70 2.40
2417 2738 8.954950 TCTTTGATCCAATCTCAGAACTATTC 57.045 34.615 0.00 0.00 0.00 1.75
2418 2739 8.766476 TCTCTTTGATCCAATCTCAGAACTATT 58.234 33.333 0.00 0.00 0.00 1.73
2419 2740 8.316497 TCTCTTTGATCCAATCTCAGAACTAT 57.684 34.615 0.00 0.00 0.00 2.12
2420 2741 7.147759 CCTCTCTTTGATCCAATCTCAGAACTA 60.148 40.741 0.00 0.00 0.00 2.24
2421 2742 6.352051 CCTCTCTTTGATCCAATCTCAGAACT 60.352 42.308 0.00 0.00 0.00 3.01
2422 2743 5.816777 CCTCTCTTTGATCCAATCTCAGAAC 59.183 44.000 0.00 0.00 0.00 3.01
2423 2744 5.104610 CCCTCTCTTTGATCCAATCTCAGAA 60.105 44.000 0.00 0.00 0.00 3.02
2424 2745 4.408270 CCCTCTCTTTGATCCAATCTCAGA 59.592 45.833 0.00 0.00 0.00 3.27
2425 2746 4.163839 ACCCTCTCTTTGATCCAATCTCAG 59.836 45.833 0.00 0.00 0.00 3.35
2426 2747 4.080695 CACCCTCTCTTTGATCCAATCTCA 60.081 45.833 0.00 0.00 0.00 3.27
2427 2748 4.450053 CACCCTCTCTTTGATCCAATCTC 58.550 47.826 0.00 0.00 0.00 2.75
2428 2749 3.201708 CCACCCTCTCTTTGATCCAATCT 59.798 47.826 0.00 0.00 0.00 2.40
2429 2750 3.549794 CCACCCTCTCTTTGATCCAATC 58.450 50.000 0.00 0.00 0.00 2.67
2430 2751 2.243221 CCCACCCTCTCTTTGATCCAAT 59.757 50.000 0.00 0.00 0.00 3.16
2431 2752 1.635487 CCCACCCTCTCTTTGATCCAA 59.365 52.381 0.00 0.00 0.00 3.53
2432 2753 1.289160 CCCACCCTCTCTTTGATCCA 58.711 55.000 0.00 0.00 0.00 3.41
2433 2754 0.106967 GCCCACCCTCTCTTTGATCC 60.107 60.000 0.00 0.00 0.00 3.36
2434 2755 0.462759 CGCCCACCCTCTCTTTGATC 60.463 60.000 0.00 0.00 0.00 2.92
2435 2756 1.604378 CGCCCACCCTCTCTTTGAT 59.396 57.895 0.00 0.00 0.00 2.57
2436 2757 2.592993 CCGCCCACCCTCTCTTTGA 61.593 63.158 0.00 0.00 0.00 2.69
2437 2758 2.045926 CCGCCCACCCTCTCTTTG 60.046 66.667 0.00 0.00 0.00 2.77
2438 2759 2.125766 GAACCGCCCACCCTCTCTTT 62.126 60.000 0.00 0.00 0.00 2.52
2439 2760 2.529389 AACCGCCCACCCTCTCTT 60.529 61.111 0.00 0.00 0.00 2.85
2440 2761 2.164332 TAGAACCGCCCACCCTCTCT 62.164 60.000 0.00 0.00 0.00 3.10
2441 2762 1.049289 ATAGAACCGCCCACCCTCTC 61.049 60.000 0.00 0.00 0.00 3.20
2442 2763 0.620700 AATAGAACCGCCCACCCTCT 60.621 55.000 0.00 0.00 0.00 3.69
2443 2764 0.179054 GAATAGAACCGCCCACCCTC 60.179 60.000 0.00 0.00 0.00 4.30
2444 2765 0.620700 AGAATAGAACCGCCCACCCT 60.621 55.000 0.00 0.00 0.00 4.34
2445 2766 0.255033 AAGAATAGAACCGCCCACCC 59.745 55.000 0.00 0.00 0.00 4.61
2446 2767 2.124277 AAAGAATAGAACCGCCCACC 57.876 50.000 0.00 0.00 0.00 4.61
2470 2791 9.460019 TGTGTATATCAATGAAATGGAGTTGAA 57.540 29.630 0.00 0.00 34.62 2.69
2471 2792 8.892723 GTGTGTATATCAATGAAATGGAGTTGA 58.107 33.333 0.00 0.00 35.33 3.18
2472 2793 8.676401 TGTGTGTATATCAATGAAATGGAGTTG 58.324 33.333 0.00 0.00 23.05 3.16
2473 2794 8.806429 TGTGTGTATATCAATGAAATGGAGTT 57.194 30.769 0.00 0.00 23.05 3.01
2474 2795 7.500227 CCTGTGTGTATATCAATGAAATGGAGT 59.500 37.037 0.00 0.00 23.05 3.85
2475 2796 7.500227 ACCTGTGTGTATATCAATGAAATGGAG 59.500 37.037 0.00 0.00 23.05 3.86
2476 2797 7.345691 ACCTGTGTGTATATCAATGAAATGGA 58.654 34.615 0.00 0.00 0.00 3.41
2477 2798 7.572523 ACCTGTGTGTATATCAATGAAATGG 57.427 36.000 0.00 0.00 0.00 3.16
2478 2799 8.275632 CGTACCTGTGTGTATATCAATGAAATG 58.724 37.037 0.00 0.00 0.00 2.32
2479 2800 8.201464 TCGTACCTGTGTGTATATCAATGAAAT 58.799 33.333 0.00 0.00 0.00 2.17
2480 2801 7.548967 TCGTACCTGTGTGTATATCAATGAAA 58.451 34.615 0.00 0.00 0.00 2.69
2481 2802 7.067737 TCTCGTACCTGTGTGTATATCAATGAA 59.932 37.037 0.00 0.00 0.00 2.57
2482 2803 6.544564 TCTCGTACCTGTGTGTATATCAATGA 59.455 38.462 0.00 0.00 0.00 2.57
2483 2804 6.735130 TCTCGTACCTGTGTGTATATCAATG 58.265 40.000 0.00 0.00 0.00 2.82
2484 2805 6.954487 TCTCGTACCTGTGTGTATATCAAT 57.046 37.500 0.00 0.00 0.00 2.57
2485 2806 6.762702 TTCTCGTACCTGTGTGTATATCAA 57.237 37.500 0.00 0.00 0.00 2.57
2486 2807 6.679638 GCTTTCTCGTACCTGTGTGTATATCA 60.680 42.308 0.00 0.00 0.00 2.15
2487 2808 5.686397 GCTTTCTCGTACCTGTGTGTATATC 59.314 44.000 0.00 0.00 0.00 1.63
2488 2809 5.126545 TGCTTTCTCGTACCTGTGTGTATAT 59.873 40.000 0.00 0.00 0.00 0.86
2489 2810 4.460034 TGCTTTCTCGTACCTGTGTGTATA 59.540 41.667 0.00 0.00 0.00 1.47
2490 2811 3.257375 TGCTTTCTCGTACCTGTGTGTAT 59.743 43.478 0.00 0.00 0.00 2.29
2491 2812 2.624364 TGCTTTCTCGTACCTGTGTGTA 59.376 45.455 0.00 0.00 0.00 2.90
2492 2813 1.411246 TGCTTTCTCGTACCTGTGTGT 59.589 47.619 0.00 0.00 0.00 3.72
2493 2814 1.792949 GTGCTTTCTCGTACCTGTGTG 59.207 52.381 0.00 0.00 0.00 3.82
2494 2815 1.602165 CGTGCTTTCTCGTACCTGTGT 60.602 52.381 0.00 0.00 0.00 3.72
2495 2816 1.060713 CGTGCTTTCTCGTACCTGTG 58.939 55.000 0.00 0.00 0.00 3.66
2496 2817 0.956633 TCGTGCTTTCTCGTACCTGT 59.043 50.000 0.00 0.00 0.00 4.00
2497 2818 2.060326 TTCGTGCTTTCTCGTACCTG 57.940 50.000 0.00 0.00 0.00 4.00
2498 2819 2.806608 TTTCGTGCTTTCTCGTACCT 57.193 45.000 0.00 0.00 0.00 3.08
2499 2820 2.157085 CCTTTTCGTGCTTTCTCGTACC 59.843 50.000 0.00 0.00 0.00 3.34
2500 2821 2.798847 ACCTTTTCGTGCTTTCTCGTAC 59.201 45.455 0.00 0.00 0.00 3.67
2501 2822 3.102052 ACCTTTTCGTGCTTTCTCGTA 57.898 42.857 0.00 0.00 0.00 3.43
2502 2823 1.949465 ACCTTTTCGTGCTTTCTCGT 58.051 45.000 0.00 0.00 0.00 4.18
2503 2824 4.389077 AGATTACCTTTTCGTGCTTTCTCG 59.611 41.667 0.00 0.00 0.00 4.04
2504 2825 5.864628 AGATTACCTTTTCGTGCTTTCTC 57.135 39.130 0.00 0.00 0.00 2.87
2505 2826 6.698380 TCTAGATTACCTTTTCGTGCTTTCT 58.302 36.000 0.00 0.00 0.00 2.52
2506 2827 6.036191 CCTCTAGATTACCTTTTCGTGCTTTC 59.964 42.308 0.00 0.00 0.00 2.62
2507 2828 5.875359 CCTCTAGATTACCTTTTCGTGCTTT 59.125 40.000 0.00 0.00 0.00 3.51
2508 2829 5.420409 CCTCTAGATTACCTTTTCGTGCTT 58.580 41.667 0.00 0.00 0.00 3.91
2509 2830 4.680975 GCCTCTAGATTACCTTTTCGTGCT 60.681 45.833 0.00 0.00 0.00 4.40
2510 2831 3.556365 GCCTCTAGATTACCTTTTCGTGC 59.444 47.826 0.00 0.00 0.00 5.34
2511 2832 5.012328 AGCCTCTAGATTACCTTTTCGTG 57.988 43.478 0.00 0.00 0.00 4.35
2512 2833 6.127793 TCTAGCCTCTAGATTACCTTTTCGT 58.872 40.000 0.00 0.00 0.00 3.85
2513 2834 6.636562 TCTAGCCTCTAGATTACCTTTTCG 57.363 41.667 0.00 0.00 0.00 3.46
2514 2835 6.452242 GCTCTAGCCTCTAGATTACCTTTTC 58.548 44.000 4.25 0.00 34.31 2.29
2515 2836 5.010213 CGCTCTAGCCTCTAGATTACCTTTT 59.990 44.000 4.25 0.00 37.91 2.27
2516 2837 4.521256 CGCTCTAGCCTCTAGATTACCTTT 59.479 45.833 4.25 0.00 37.91 3.11
2517 2838 4.076394 CGCTCTAGCCTCTAGATTACCTT 58.924 47.826 4.25 0.00 37.91 3.50
2518 2839 3.073356 ACGCTCTAGCCTCTAGATTACCT 59.927 47.826 4.25 0.00 37.91 3.08
2519 2840 3.414269 ACGCTCTAGCCTCTAGATTACC 58.586 50.000 4.25 0.00 37.91 2.85
2520 2841 4.093850 GCTACGCTCTAGCCTCTAGATTAC 59.906 50.000 4.25 0.00 37.91 1.89
2521 2842 4.255301 GCTACGCTCTAGCCTCTAGATTA 58.745 47.826 4.25 0.00 37.91 1.75
2522 2843 3.078837 GCTACGCTCTAGCCTCTAGATT 58.921 50.000 4.25 0.00 37.91 2.40
2523 2844 2.706890 GCTACGCTCTAGCCTCTAGAT 58.293 52.381 4.25 0.00 37.91 1.98
2524 2845 1.605968 CGCTACGCTCTAGCCTCTAGA 60.606 57.143 3.82 3.82 37.26 2.43
2525 2846 0.793861 CGCTACGCTCTAGCCTCTAG 59.206 60.000 5.04 0.00 37.26 2.43
2526 2847 0.391966 TCGCTACGCTCTAGCCTCTA 59.608 55.000 5.04 0.00 37.26 2.43
2527 2848 0.464013 TTCGCTACGCTCTAGCCTCT 60.464 55.000 5.04 0.00 37.26 3.69
2528 2849 0.594110 ATTCGCTACGCTCTAGCCTC 59.406 55.000 5.04 0.00 37.26 4.70
2529 2850 1.807742 CTATTCGCTACGCTCTAGCCT 59.192 52.381 5.04 0.00 37.26 4.58
2530 2851 1.729797 GCTATTCGCTACGCTCTAGCC 60.730 57.143 5.04 0.00 37.26 3.93
2531 2852 1.608822 GCTATTCGCTACGCTCTAGC 58.391 55.000 1.09 1.09 37.21 3.42
2542 2863 4.052608 GAGGAAAGGTTAGAGCTATTCGC 58.947 47.826 0.00 0.00 39.57 4.70
2543 2864 4.291783 CGAGGAAAGGTTAGAGCTATTCG 58.708 47.826 0.00 0.00 0.00 3.34
2544 2865 4.501743 CCCGAGGAAAGGTTAGAGCTATTC 60.502 50.000 0.00 0.00 0.00 1.75
2545 2866 3.388350 CCCGAGGAAAGGTTAGAGCTATT 59.612 47.826 0.00 0.00 0.00 1.73
2546 2867 2.966516 CCCGAGGAAAGGTTAGAGCTAT 59.033 50.000 0.00 0.00 0.00 2.97
2547 2868 2.385803 CCCGAGGAAAGGTTAGAGCTA 58.614 52.381 0.00 0.00 0.00 3.32
2548 2869 1.196012 CCCGAGGAAAGGTTAGAGCT 58.804 55.000 0.00 0.00 0.00 4.09
2549 2870 0.178301 CCCCGAGGAAAGGTTAGAGC 59.822 60.000 0.00 0.00 33.47 4.09
2550 2871 1.757699 CTCCCCGAGGAAAGGTTAGAG 59.242 57.143 0.00 0.00 43.40 2.43
2551 2872 1.861982 CTCCCCGAGGAAAGGTTAGA 58.138 55.000 0.00 0.00 43.40 2.10
2562 2883 2.319410 ATCTCCCTTCCCTCCCCGAG 62.319 65.000 0.00 0.00 0.00 4.63
2563 2884 1.002794 TATCTCCCTTCCCTCCCCGA 61.003 60.000 0.00 0.00 0.00 5.14
2564 2885 0.117340 ATATCTCCCTTCCCTCCCCG 59.883 60.000 0.00 0.00 0.00 5.73
2565 2886 1.152271 TCATATCTCCCTTCCCTCCCC 59.848 57.143 0.00 0.00 0.00 4.81
2566 2887 2.545810 CTCATATCTCCCTTCCCTCCC 58.454 57.143 0.00 0.00 0.00 4.30
2567 2888 2.545810 CCTCATATCTCCCTTCCCTCC 58.454 57.143 0.00 0.00 0.00 4.30
2568 2889 2.158081 ACCCTCATATCTCCCTTCCCTC 60.158 54.545 0.00 0.00 0.00 4.30
2569 2890 1.876473 ACCCTCATATCTCCCTTCCCT 59.124 52.381 0.00 0.00 0.00 4.20
2570 2891 2.424684 ACCCTCATATCTCCCTTCCC 57.575 55.000 0.00 0.00 0.00 3.97
2571 2892 2.835156 GCTACCCTCATATCTCCCTTCC 59.165 54.545 0.00 0.00 0.00 3.46
2572 2893 3.785364 AGCTACCCTCATATCTCCCTTC 58.215 50.000 0.00 0.00 0.00 3.46
2573 2894 3.933239 AGCTACCCTCATATCTCCCTT 57.067 47.619 0.00 0.00 0.00 3.95
2574 2895 5.399727 GCTATAGCTACCCTCATATCTCCCT 60.400 48.000 17.75 0.00 38.21 4.20
2575 2896 4.830600 GCTATAGCTACCCTCATATCTCCC 59.169 50.000 17.75 0.00 38.21 4.30
2576 2897 4.830600 GGCTATAGCTACCCTCATATCTCC 59.169 50.000 23.53 0.00 41.70 3.71
2577 2898 5.450453 TGGCTATAGCTACCCTCATATCTC 58.550 45.833 23.53 3.09 41.70 2.75
2578 2899 5.473849 TGGCTATAGCTACCCTCATATCT 57.526 43.478 23.53 0.00 41.70 1.98
2579 2900 7.148154 CGATATGGCTATAGCTACCCTCATATC 60.148 44.444 28.13 28.13 39.29 1.63
2580 2901 6.661377 CGATATGGCTATAGCTACCCTCATAT 59.339 42.308 23.53 22.48 41.70 1.78
2581 2902 6.004574 CGATATGGCTATAGCTACCCTCATA 58.995 44.000 23.53 19.38 41.70 2.15
2582 2903 4.830046 CGATATGGCTATAGCTACCCTCAT 59.170 45.833 23.53 18.02 41.70 2.90
2583 2904 4.079958 TCGATATGGCTATAGCTACCCTCA 60.080 45.833 23.53 12.47 41.70 3.86
2584 2905 4.462133 TCGATATGGCTATAGCTACCCTC 58.538 47.826 23.53 13.70 41.70 4.30
2585 2906 4.521536 TCGATATGGCTATAGCTACCCT 57.478 45.455 23.53 6.31 41.70 4.34
2586 2907 5.074115 AGATCGATATGGCTATAGCTACCC 58.926 45.833 23.53 8.13 41.70 3.69
2587 2908 6.642707 AAGATCGATATGGCTATAGCTACC 57.357 41.667 23.53 8.49 41.70 3.18
2588 2909 7.976734 ACAAAAGATCGATATGGCTATAGCTAC 59.023 37.037 23.53 9.21 41.70 3.58
2589 2910 8.067751 ACAAAAGATCGATATGGCTATAGCTA 57.932 34.615 23.53 18.90 41.70 3.32
2590 2911 6.940739 ACAAAAGATCGATATGGCTATAGCT 58.059 36.000 23.53 8.16 41.70 3.32
2591 2912 8.191446 TCTACAAAAGATCGATATGGCTATAGC 58.809 37.037 16.78 16.78 41.14 2.97
2594 2915 7.547370 GCTTCTACAAAAGATCGATATGGCTAT 59.453 37.037 0.00 0.00 33.05 2.97
2595 2916 6.868864 GCTTCTACAAAAGATCGATATGGCTA 59.131 38.462 0.00 0.00 33.05 3.93
2596 2917 5.698545 GCTTCTACAAAAGATCGATATGGCT 59.301 40.000 0.00 0.00 33.05 4.75
2597 2918 5.106908 GGCTTCTACAAAAGATCGATATGGC 60.107 44.000 0.00 0.00 33.05 4.40
2598 2919 5.409826 GGGCTTCTACAAAAGATCGATATGG 59.590 44.000 0.00 0.00 33.05 2.74
2599 2920 5.991606 TGGGCTTCTACAAAAGATCGATATG 59.008 40.000 0.00 0.00 33.05 1.78
2600 2921 6.174720 TGGGCTTCTACAAAAGATCGATAT 57.825 37.500 0.00 0.00 33.05 1.63
2601 2922 5.607939 TGGGCTTCTACAAAAGATCGATA 57.392 39.130 0.00 0.00 33.05 2.92
2602 2923 4.487714 TGGGCTTCTACAAAAGATCGAT 57.512 40.909 0.00 0.00 33.05 3.59
2603 2924 3.973206 TGGGCTTCTACAAAAGATCGA 57.027 42.857 0.00 0.00 33.05 3.59
2604 2925 5.116180 TGTATGGGCTTCTACAAAAGATCG 58.884 41.667 0.00 0.00 33.05 3.69
2605 2926 7.934120 ACTATGTATGGGCTTCTACAAAAGATC 59.066 37.037 10.90 0.00 33.05 2.75
2606 2927 7.806180 ACTATGTATGGGCTTCTACAAAAGAT 58.194 34.615 10.90 0.00 33.05 2.40
2607 2928 7.195374 ACTATGTATGGGCTTCTACAAAAGA 57.805 36.000 10.90 0.00 32.02 2.52
2608 2929 7.336931 ACAACTATGTATGGGCTTCTACAAAAG 59.663 37.037 0.00 0.00 38.24 2.27
2609 2930 7.172342 ACAACTATGTATGGGCTTCTACAAAA 58.828 34.615 0.00 0.00 38.24 2.44
2610 2931 6.717289 ACAACTATGTATGGGCTTCTACAAA 58.283 36.000 0.00 0.00 38.24 2.83
2611 2932 6.308015 ACAACTATGTATGGGCTTCTACAA 57.692 37.500 0.00 0.00 38.24 2.41
2612 2933 5.451381 CGACAACTATGTATGGGCTTCTACA 60.451 44.000 0.00 0.00 40.74 2.74
2613 2934 4.982916 CGACAACTATGTATGGGCTTCTAC 59.017 45.833 0.00 0.00 40.74 2.59
2614 2935 4.500887 GCGACAACTATGTATGGGCTTCTA 60.501 45.833 0.00 0.00 40.74 2.10
2615 2936 3.741388 GCGACAACTATGTATGGGCTTCT 60.741 47.826 0.00 0.00 40.74 2.85
2616 2937 2.544267 GCGACAACTATGTATGGGCTTC 59.456 50.000 0.00 0.00 40.74 3.86
2617 2938 2.561569 GCGACAACTATGTATGGGCTT 58.438 47.619 0.00 0.00 40.74 4.35
2618 2939 1.202651 GGCGACAACTATGTATGGGCT 60.203 52.381 0.00 0.00 40.74 5.19
2619 2940 1.202651 AGGCGACAACTATGTATGGGC 60.203 52.381 0.00 0.00 40.74 5.36
2620 2941 2.910688 AGGCGACAACTATGTATGGG 57.089 50.000 0.00 0.00 40.74 4.00
2621 2942 4.634004 TCAAAAGGCGACAACTATGTATGG 59.366 41.667 0.00 0.00 40.74 2.74
2622 2943 5.794687 TCAAAAGGCGACAACTATGTATG 57.205 39.130 0.00 0.00 40.74 2.39
2623 2944 7.094377 ACAAATCAAAAGGCGACAACTATGTAT 60.094 33.333 0.00 0.00 40.74 2.29
2629 2950 3.380004 TGACAAATCAAAAGGCGACAACT 59.620 39.130 0.00 0.00 0.00 3.16
2635 2956 5.006552 ACAAAATGTGACAAATCAAAAGGCG 59.993 36.000 0.00 0.00 36.31 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.