Multiple sequence alignment - TraesCS2A01G010500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G010500 chr2A 100.000 3182 0 0 1 3182 4048655 4045474 0.000000e+00 5877.0
1 TraesCS2A01G010500 chr2A 85.161 155 23 0 16 170 773261472 773261318 3.290000e-35 159.0
2 TraesCS2A01G010500 chr2D 94.390 2674 95 22 543 3182 5425827 5423175 0.000000e+00 4056.0
3 TraesCS2A01G010500 chr2D 94.163 257 14 1 2926 3182 321031962 321031707 1.070000e-104 390.0
4 TraesCS2A01G010500 chr2D 92.996 257 17 1 2926 3182 260770442 260770187 1.080000e-99 374.0
5 TraesCS2A01G010500 chr2D 87.069 116 11 4 2581 2693 5401404 5401290 9.260000e-26 128.0
6 TraesCS2A01G010500 chr2D 88.776 98 10 1 1885 1981 5401993 5401896 5.580000e-23 119.0
7 TraesCS2A01G010500 chr2B 92.205 2091 117 20 827 2900 5786365 5784304 0.000000e+00 2916.0
8 TraesCS2A01G010500 chr2B 91.238 2100 108 26 823 2913 6022579 6024611 0.000000e+00 2789.0
9 TraesCS2A01G010500 chr2B 91.855 1854 109 16 1070 2913 6120409 6122230 0.000000e+00 2549.0
10 TraesCS2A01G010500 chr2B 94.613 1151 49 5 823 1961 6004569 6005718 0.000000e+00 1770.0
11 TraesCS2A01G010500 chr2B 90.958 929 59 8 1980 2900 6005842 6006753 0.000000e+00 1227.0
12 TraesCS2A01G010500 chr2B 87.087 635 55 12 1547 2174 6065048 6065662 0.000000e+00 693.0
13 TraesCS2A01G010500 chr2B 87.864 412 15 16 694 1072 6119877 6120286 4.840000e-123 451.0
14 TraesCS2A01G010500 chr2B 89.630 270 23 5 2916 3182 643915352 643915619 3.930000e-89 339.0
15 TraesCS2A01G010500 chr2B 96.970 132 3 1 694 825 6022348 6022478 1.490000e-53 220.0
16 TraesCS2A01G010500 chr2B 96.212 132 4 1 694 825 6004338 6004468 6.910000e-52 215.0
17 TraesCS2A01G010500 chr2B 95.455 132 5 1 694 825 5786529 5786399 3.220000e-50 209.0
18 TraesCS2A01G010500 chr2B 87.097 155 20 0 16 170 106858246 106858092 3.260000e-40 176.0
19 TraesCS2A01G010500 chr2B 100.000 37 0 0 694 730 6003765 6003801 5.700000e-08 69.4
20 TraesCS2A01G010500 chr7D 91.353 266 21 2 2916 3181 427141234 427141497 2.330000e-96 363.0
21 TraesCS2A01G010500 chr4D 89.963 269 22 5 2916 3182 484940930 484941195 3.040000e-90 342.0
22 TraesCS2A01G010500 chr4D 90.698 258 19 5 2928 3182 323290767 323290512 3.930000e-89 339.0
23 TraesCS2A01G010500 chr1B 89.179 268 27 2 2916 3182 453201248 453201514 1.830000e-87 333.0
24 TraesCS2A01G010500 chr1B 89.259 270 21 6 2913 3182 667731326 667731065 6.580000e-87 331.0
25 TraesCS2A01G010500 chr7A 98.246 171 3 0 1 171 681256231 681256401 1.860000e-77 300.0
26 TraesCS2A01G010500 chr6A 98.246 171 3 0 1 171 32923551 32923721 1.860000e-77 300.0
27 TraesCS2A01G010500 chr3D 96.571 175 5 1 1 174 599395173 599394999 4.020000e-74 289.0
28 TraesCS2A01G010500 chr3D 88.571 105 12 0 1160 1264 574858876 574858772 9.260000e-26 128.0
29 TraesCS2A01G010500 chr3A 87.097 155 20 0 16 170 697022360 697022206 3.260000e-40 176.0
30 TraesCS2A01G010500 chr3A 89.524 105 11 0 1160 1264 710771082 710771186 1.990000e-27 134.0
31 TraesCS2A01G010500 chr3B 88.571 105 12 0 1160 1264 765059689 765059793 9.260000e-26 128.0
32 TraesCS2A01G010500 chr5A 94.643 56 3 0 115 170 477832366 477832311 1.570000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G010500 chr2A 4045474 4048655 3181 True 5877.00 5877 100.00000 1 3182 1 chr2A.!!$R1 3181
1 TraesCS2A01G010500 chr2D 5423175 5425827 2652 True 4056.00 4056 94.39000 543 3182 1 chr2D.!!$R1 2639
2 TraesCS2A01G010500 chr2B 5784304 5786529 2225 True 1562.50 2916 93.83000 694 2900 2 chr2B.!!$R2 2206
3 TraesCS2A01G010500 chr2B 6022348 6024611 2263 False 1504.50 2789 94.10400 694 2913 2 chr2B.!!$F4 2219
4 TraesCS2A01G010500 chr2B 6119877 6122230 2353 False 1500.00 2549 89.85950 694 2913 2 chr2B.!!$F5 2219
5 TraesCS2A01G010500 chr2B 6003765 6006753 2988 False 820.35 1770 95.44575 694 2900 4 chr2B.!!$F3 2206
6 TraesCS2A01G010500 chr2B 6065048 6065662 614 False 693.00 693 87.08700 1547 2174 1 chr2B.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.033796 AAGTGGTGCATGGGGATGAG 60.034 55.0 0.00 0.0 0.00 2.90 F
163 164 0.034186 GTGCATGGGGATGAGGTGAA 60.034 55.0 0.00 0.0 0.00 3.18 F
472 473 0.036388 GCCGACCACATGGAAGAGAA 60.036 55.0 4.53 0.0 38.94 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 3085 1.568612 AACATCAGCCTTGTCGCACG 61.569 55.000 0.0 0.0 0.0 5.34 R
2164 3103 5.994668 TCATGCATTATTGGTAGCGATGTAA 59.005 36.000 0.0 0.0 0.0 2.41 R
2225 3165 1.825474 ACAGTAGTGCCTAGACGCAAT 59.175 47.619 0.0 0.0 41.3 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.441093 TTTCTTGCTAGCAAATATGTGGAG 57.559 37.500 28.95 15.16 35.33 3.86
24 25 5.357742 TCTTGCTAGCAAATATGTGGAGA 57.642 39.130 28.95 17.14 35.33 3.71
25 26 5.744171 TCTTGCTAGCAAATATGTGGAGAA 58.256 37.500 28.95 4.22 35.33 2.87
26 27 5.819379 TCTTGCTAGCAAATATGTGGAGAAG 59.181 40.000 28.95 13.77 35.33 2.85
27 28 5.102953 TGCTAGCAAATATGTGGAGAAGT 57.897 39.130 16.84 0.00 0.00 3.01
28 29 5.500234 TGCTAGCAAATATGTGGAGAAGTT 58.500 37.500 16.84 0.00 0.00 2.66
29 30 5.586243 TGCTAGCAAATATGTGGAGAAGTTC 59.414 40.000 16.84 0.00 0.00 3.01
30 31 5.586243 GCTAGCAAATATGTGGAGAAGTTCA 59.414 40.000 10.63 0.00 0.00 3.18
31 32 6.238320 GCTAGCAAATATGTGGAGAAGTTCAG 60.238 42.308 10.63 0.00 0.00 3.02
32 33 5.809001 AGCAAATATGTGGAGAAGTTCAGA 58.191 37.500 5.50 0.00 0.00 3.27
33 34 5.879223 AGCAAATATGTGGAGAAGTTCAGAG 59.121 40.000 5.50 0.00 0.00 3.35
34 35 5.877012 GCAAATATGTGGAGAAGTTCAGAGA 59.123 40.000 5.50 0.00 0.00 3.10
35 36 6.541641 GCAAATATGTGGAGAAGTTCAGAGAT 59.458 38.462 5.50 0.00 0.00 2.75
36 37 7.712639 GCAAATATGTGGAGAAGTTCAGAGATA 59.287 37.037 5.50 0.00 0.00 1.98
37 38 9.605275 CAAATATGTGGAGAAGTTCAGAGATAA 57.395 33.333 5.50 0.00 0.00 1.75
39 40 9.775854 AATATGTGGAGAAGTTCAGAGATAATG 57.224 33.333 5.50 0.00 0.00 1.90
40 41 6.857437 TGTGGAGAAGTTCAGAGATAATGA 57.143 37.500 5.50 0.00 0.00 2.57
41 42 6.871844 TGTGGAGAAGTTCAGAGATAATGAG 58.128 40.000 5.50 0.00 0.00 2.90
42 43 6.665248 TGTGGAGAAGTTCAGAGATAATGAGA 59.335 38.462 5.50 0.00 0.00 3.27
43 44 7.179160 TGTGGAGAAGTTCAGAGATAATGAGAA 59.821 37.037 5.50 0.00 0.00 2.87
44 45 7.706179 GTGGAGAAGTTCAGAGATAATGAGAAG 59.294 40.741 5.50 0.00 0.00 2.85
45 46 7.617329 TGGAGAAGTTCAGAGATAATGAGAAGA 59.383 37.037 5.50 0.00 0.00 2.87
46 47 8.641541 GGAGAAGTTCAGAGATAATGAGAAGAT 58.358 37.037 5.50 0.00 0.00 2.40
66 67 9.950496 AGAAGATTTCTCTAGCTACATTTTCAA 57.050 29.630 0.00 0.00 34.07 2.69
68 69 8.729805 AGATTTCTCTAGCTACATTTTCAAGG 57.270 34.615 0.00 0.00 0.00 3.61
69 70 8.543774 AGATTTCTCTAGCTACATTTTCAAGGA 58.456 33.333 0.00 0.00 0.00 3.36
70 71 9.167311 GATTTCTCTAGCTACATTTTCAAGGAA 57.833 33.333 0.00 0.00 0.00 3.36
71 72 8.918202 TTTCTCTAGCTACATTTTCAAGGAAA 57.082 30.769 0.00 0.00 0.00 3.13
72 73 8.553459 TTCTCTAGCTACATTTTCAAGGAAAG 57.447 34.615 0.00 0.00 32.93 2.62
73 74 7.680730 TCTCTAGCTACATTTTCAAGGAAAGT 58.319 34.615 0.00 0.00 32.93 2.66
74 75 8.157476 TCTCTAGCTACATTTTCAAGGAAAGTT 58.843 33.333 0.00 0.00 32.93 2.66
75 76 8.691661 TCTAGCTACATTTTCAAGGAAAGTTT 57.308 30.769 0.00 0.00 32.93 2.66
76 77 8.567948 TCTAGCTACATTTTCAAGGAAAGTTTG 58.432 33.333 0.00 0.00 32.93 2.93
77 78 6.515832 AGCTACATTTTCAAGGAAAGTTTGG 58.484 36.000 0.00 0.00 32.93 3.28
78 79 6.323739 AGCTACATTTTCAAGGAAAGTTTGGA 59.676 34.615 0.00 0.00 32.93 3.53
79 80 6.983890 GCTACATTTTCAAGGAAAGTTTGGAA 59.016 34.615 0.00 0.00 32.93 3.53
80 81 7.169813 GCTACATTTTCAAGGAAAGTTTGGAAG 59.830 37.037 0.00 0.00 32.93 3.46
81 82 7.181569 ACATTTTCAAGGAAAGTTTGGAAGA 57.818 32.000 0.00 0.00 32.93 2.87
82 83 7.619965 ACATTTTCAAGGAAAGTTTGGAAGAA 58.380 30.769 0.00 0.00 32.93 2.52
83 84 8.100164 ACATTTTCAAGGAAAGTTTGGAAGAAA 58.900 29.630 0.00 0.00 32.93 2.52
84 85 9.112725 CATTTTCAAGGAAAGTTTGGAAGAAAT 57.887 29.630 0.00 0.00 32.93 2.17
85 86 9.685276 ATTTTCAAGGAAAGTTTGGAAGAAATT 57.315 25.926 0.00 0.00 32.93 1.82
86 87 9.513906 TTTTCAAGGAAAGTTTGGAAGAAATTT 57.486 25.926 0.00 0.00 32.93 1.82
89 90 9.594478 TCAAGGAAAGTTTGGAAGAAATTTAAC 57.406 29.630 0.00 0.00 28.21 2.01
90 91 9.377312 CAAGGAAAGTTTGGAAGAAATTTAACA 57.623 29.630 0.00 0.00 28.21 2.41
92 93 9.546428 AGGAAAGTTTGGAAGAAATTTAACATG 57.454 29.630 0.00 0.00 28.21 3.21
93 94 8.773645 GGAAAGTTTGGAAGAAATTTAACATGG 58.226 33.333 0.00 0.00 28.21 3.66
94 95 9.541143 GAAAGTTTGGAAGAAATTTAACATGGA 57.459 29.630 0.00 0.00 28.21 3.41
95 96 9.898152 AAAGTTTGGAAGAAATTTAACATGGAA 57.102 25.926 0.00 0.00 0.00 3.53
96 97 9.546428 AAGTTTGGAAGAAATTTAACATGGAAG 57.454 29.630 0.00 0.00 0.00 3.46
97 98 8.704668 AGTTTGGAAGAAATTTAACATGGAAGT 58.295 29.630 0.00 0.00 0.00 3.01
98 99 9.325198 GTTTGGAAGAAATTTAACATGGAAGTT 57.675 29.630 0.00 0.00 35.55 2.66
101 102 8.303876 TGGAAGAAATTTAACATGGAAGTTAGC 58.696 33.333 0.00 0.00 35.57 3.09
102 103 8.303876 GGAAGAAATTTAACATGGAAGTTAGCA 58.696 33.333 0.00 0.00 35.57 3.49
103 104 9.346725 GAAGAAATTTAACATGGAAGTTAGCAG 57.653 33.333 0.00 0.00 35.57 4.24
104 105 8.635765 AGAAATTTAACATGGAAGTTAGCAGA 57.364 30.769 0.00 0.00 35.57 4.26
105 106 8.515414 AGAAATTTAACATGGAAGTTAGCAGAC 58.485 33.333 0.00 0.00 35.57 3.51
106 107 7.759489 AATTTAACATGGAAGTTAGCAGACA 57.241 32.000 0.00 0.00 35.57 3.41
107 108 6.554334 TTTAACATGGAAGTTAGCAGACAC 57.446 37.500 0.00 0.00 35.57 3.67
108 109 3.769739 ACATGGAAGTTAGCAGACACA 57.230 42.857 0.00 0.00 0.00 3.72
109 110 4.085357 ACATGGAAGTTAGCAGACACAA 57.915 40.909 0.00 0.00 0.00 3.33
110 111 4.067896 ACATGGAAGTTAGCAGACACAAG 58.932 43.478 0.00 0.00 0.00 3.16
111 112 2.494059 TGGAAGTTAGCAGACACAAGC 58.506 47.619 0.00 0.00 0.00 4.01
112 113 2.104792 TGGAAGTTAGCAGACACAAGCT 59.895 45.455 0.00 0.00 44.55 3.74
113 114 3.323691 TGGAAGTTAGCAGACACAAGCTA 59.676 43.478 0.00 0.00 42.05 3.32
114 115 3.929610 GGAAGTTAGCAGACACAAGCTAG 59.070 47.826 0.00 0.00 43.50 3.42
115 116 3.601443 AGTTAGCAGACACAAGCTAGG 57.399 47.619 0.00 0.00 43.50 3.02
116 117 2.900546 AGTTAGCAGACACAAGCTAGGT 59.099 45.455 0.00 0.00 43.50 3.08
117 118 4.087182 AGTTAGCAGACACAAGCTAGGTA 58.913 43.478 0.00 0.00 43.50 3.08
118 119 4.158764 AGTTAGCAGACACAAGCTAGGTAG 59.841 45.833 0.00 0.00 43.50 3.18
119 120 2.808919 AGCAGACACAAGCTAGGTAGA 58.191 47.619 0.00 0.00 39.78 2.59
120 121 2.757868 AGCAGACACAAGCTAGGTAGAG 59.242 50.000 0.00 0.00 39.78 2.43
121 122 2.737039 GCAGACACAAGCTAGGTAGAGC 60.737 54.545 0.00 0.00 43.19 4.09
142 143 2.299326 AGGAAAGCAGCATTGGAAGT 57.701 45.000 0.00 0.00 0.00 3.01
143 144 1.891150 AGGAAAGCAGCATTGGAAGTG 59.109 47.619 0.00 0.00 0.00 3.16
144 145 1.067354 GGAAAGCAGCATTGGAAGTGG 60.067 52.381 0.00 0.00 0.00 4.00
145 146 1.615392 GAAAGCAGCATTGGAAGTGGT 59.385 47.619 0.00 0.00 0.00 4.16
146 147 0.963962 AAGCAGCATTGGAAGTGGTG 59.036 50.000 0.00 1.31 45.28 4.17
148 149 2.343506 CAGCATTGGAAGTGGTGCA 58.656 52.632 0.00 0.00 39.94 4.57
149 150 0.892755 CAGCATTGGAAGTGGTGCAT 59.107 50.000 0.00 0.00 39.94 3.96
150 151 0.892755 AGCATTGGAAGTGGTGCATG 59.107 50.000 0.00 0.00 39.94 4.06
151 152 0.108520 GCATTGGAAGTGGTGCATGG 60.109 55.000 0.00 0.00 37.52 3.66
152 153 0.533491 CATTGGAAGTGGTGCATGGG 59.467 55.000 0.00 0.00 0.00 4.00
153 154 0.615544 ATTGGAAGTGGTGCATGGGG 60.616 55.000 0.00 0.00 0.00 4.96
154 155 1.724148 TTGGAAGTGGTGCATGGGGA 61.724 55.000 0.00 0.00 0.00 4.81
155 156 1.307647 GGAAGTGGTGCATGGGGAT 59.692 57.895 0.00 0.00 0.00 3.85
156 157 1.039233 GGAAGTGGTGCATGGGGATG 61.039 60.000 0.00 0.00 0.00 3.51
157 158 0.034186 GAAGTGGTGCATGGGGATGA 60.034 55.000 0.00 0.00 0.00 2.92
158 159 0.033796 AAGTGGTGCATGGGGATGAG 60.034 55.000 0.00 0.00 0.00 2.90
159 160 1.454479 GTGGTGCATGGGGATGAGG 60.454 63.158 0.00 0.00 0.00 3.86
160 161 1.930133 TGGTGCATGGGGATGAGGT 60.930 57.895 0.00 0.00 0.00 3.85
161 162 1.454479 GGTGCATGGGGATGAGGTG 60.454 63.158 0.00 0.00 0.00 4.00
162 163 1.609239 GTGCATGGGGATGAGGTGA 59.391 57.895 0.00 0.00 0.00 4.02
163 164 0.034186 GTGCATGGGGATGAGGTGAA 60.034 55.000 0.00 0.00 0.00 3.18
164 165 0.256752 TGCATGGGGATGAGGTGAAG 59.743 55.000 0.00 0.00 0.00 3.02
165 166 1.105759 GCATGGGGATGAGGTGAAGC 61.106 60.000 0.00 0.00 0.00 3.86
166 167 0.256752 CATGGGGATGAGGTGAAGCA 59.743 55.000 0.00 0.00 0.00 3.91
167 168 0.549950 ATGGGGATGAGGTGAAGCAG 59.450 55.000 0.00 0.00 0.00 4.24
168 169 0.842030 TGGGGATGAGGTGAAGCAGT 60.842 55.000 0.00 0.00 0.00 4.40
169 170 1.204146 GGGGATGAGGTGAAGCAGTA 58.796 55.000 0.00 0.00 0.00 2.74
170 171 1.134371 GGGGATGAGGTGAAGCAGTAC 60.134 57.143 0.00 0.00 0.00 2.73
171 172 1.134371 GGGATGAGGTGAAGCAGTACC 60.134 57.143 0.00 0.00 37.23 3.34
173 174 2.237392 GGATGAGGTGAAGCAGTACCTT 59.763 50.000 7.16 0.00 46.92 3.50
174 175 2.839486 TGAGGTGAAGCAGTACCTTG 57.161 50.000 7.16 0.00 46.92 3.61
175 176 2.047061 TGAGGTGAAGCAGTACCTTGT 58.953 47.619 7.16 0.00 46.92 3.16
176 177 2.438021 TGAGGTGAAGCAGTACCTTGTT 59.562 45.455 7.16 0.00 46.92 2.83
177 178 3.067833 GAGGTGAAGCAGTACCTTGTTC 58.932 50.000 7.16 0.00 46.92 3.18
178 179 1.798813 GGTGAAGCAGTACCTTGTTCG 59.201 52.381 0.00 0.00 34.11 3.95
179 180 2.480845 GTGAAGCAGTACCTTGTTCGT 58.519 47.619 0.00 0.00 0.00 3.85
180 181 3.553508 GGTGAAGCAGTACCTTGTTCGTA 60.554 47.826 0.00 0.00 34.11 3.43
181 182 4.053295 GTGAAGCAGTACCTTGTTCGTAA 58.947 43.478 0.00 0.00 0.00 3.18
182 183 4.053295 TGAAGCAGTACCTTGTTCGTAAC 58.947 43.478 0.00 0.00 0.00 2.50
183 184 3.738830 AGCAGTACCTTGTTCGTAACA 57.261 42.857 0.00 0.00 40.21 2.41
184 185 3.650139 AGCAGTACCTTGTTCGTAACAG 58.350 45.455 0.00 0.00 43.27 3.16
185 186 3.069158 AGCAGTACCTTGTTCGTAACAGT 59.931 43.478 0.00 0.00 43.27 3.55
186 187 4.279169 AGCAGTACCTTGTTCGTAACAGTA 59.721 41.667 0.00 0.00 43.27 2.74
187 188 4.620184 GCAGTACCTTGTTCGTAACAGTAG 59.380 45.833 0.00 0.00 43.27 2.57
188 189 5.563475 GCAGTACCTTGTTCGTAACAGTAGA 60.563 44.000 0.00 0.00 43.27 2.59
189 190 6.441274 CAGTACCTTGTTCGTAACAGTAGAA 58.559 40.000 0.00 0.00 43.27 2.10
190 191 6.581542 CAGTACCTTGTTCGTAACAGTAGAAG 59.418 42.308 0.00 0.00 43.27 2.85
191 192 5.779529 ACCTTGTTCGTAACAGTAGAAGA 57.220 39.130 0.00 0.00 43.27 2.87
192 193 6.342338 ACCTTGTTCGTAACAGTAGAAGAT 57.658 37.500 0.00 0.00 43.27 2.40
193 194 6.756221 ACCTTGTTCGTAACAGTAGAAGATT 58.244 36.000 0.00 0.00 43.27 2.40
194 195 6.645415 ACCTTGTTCGTAACAGTAGAAGATTG 59.355 38.462 0.00 0.00 43.27 2.67
195 196 6.645415 CCTTGTTCGTAACAGTAGAAGATTGT 59.355 38.462 0.00 0.00 43.27 2.71
196 197 7.148787 CCTTGTTCGTAACAGTAGAAGATTGTC 60.149 40.741 0.00 0.00 43.27 3.18
197 198 5.854866 TGTTCGTAACAGTAGAAGATTGTCG 59.145 40.000 0.00 0.00 36.25 4.35
198 199 5.868043 TCGTAACAGTAGAAGATTGTCGA 57.132 39.130 0.00 0.00 0.00 4.20
199 200 6.245115 TCGTAACAGTAGAAGATTGTCGAA 57.755 37.500 0.00 0.00 0.00 3.71
200 201 6.312487 TCGTAACAGTAGAAGATTGTCGAAG 58.688 40.000 0.00 0.00 0.00 3.79
201 202 5.003590 CGTAACAGTAGAAGATTGTCGAAGC 59.996 44.000 0.00 0.00 0.00 3.86
202 203 4.521130 ACAGTAGAAGATTGTCGAAGCA 57.479 40.909 0.00 0.00 0.00 3.91
203 204 4.489810 ACAGTAGAAGATTGTCGAAGCAG 58.510 43.478 0.00 0.00 0.00 4.24
204 205 4.021894 ACAGTAGAAGATTGTCGAAGCAGT 60.022 41.667 0.00 0.00 0.00 4.40
205 206 4.325741 CAGTAGAAGATTGTCGAAGCAGTG 59.674 45.833 0.00 0.00 0.00 3.66
206 207 2.072298 AGAAGATTGTCGAAGCAGTGC 58.928 47.619 7.13 7.13 0.00 4.40
207 208 1.800586 GAAGATTGTCGAAGCAGTGCA 59.199 47.619 19.20 0.00 0.00 4.57
208 209 1.882912 AGATTGTCGAAGCAGTGCAA 58.117 45.000 19.20 1.32 0.00 4.08
209 210 2.221169 AGATTGTCGAAGCAGTGCAAA 58.779 42.857 19.20 2.04 0.00 3.68
210 211 2.816087 AGATTGTCGAAGCAGTGCAAAT 59.184 40.909 19.20 2.42 0.00 2.32
211 212 3.254166 AGATTGTCGAAGCAGTGCAAATT 59.746 39.130 19.20 2.30 0.00 1.82
212 213 2.404265 TGTCGAAGCAGTGCAAATTG 57.596 45.000 19.20 7.16 0.00 2.32
213 214 1.001487 TGTCGAAGCAGTGCAAATTGG 60.001 47.619 19.20 4.56 0.00 3.16
214 215 1.266718 GTCGAAGCAGTGCAAATTGGA 59.733 47.619 19.20 7.03 0.00 3.53
215 216 1.536766 TCGAAGCAGTGCAAATTGGAG 59.463 47.619 19.20 0.00 0.00 3.86
216 217 1.401931 CGAAGCAGTGCAAATTGGAGG 60.402 52.381 19.20 0.00 0.00 4.30
217 218 0.971386 AAGCAGTGCAAATTGGAGGG 59.029 50.000 19.20 0.00 0.00 4.30
218 219 1.079612 GCAGTGCAAATTGGAGGGC 60.080 57.895 11.09 0.00 0.00 5.19
219 220 1.818959 GCAGTGCAAATTGGAGGGCA 61.819 55.000 11.09 0.00 0.00 5.36
220 221 0.899720 CAGTGCAAATTGGAGGGCAT 59.100 50.000 0.00 0.00 38.68 4.40
221 222 0.899720 AGTGCAAATTGGAGGGCATG 59.100 50.000 0.00 0.00 38.68 4.06
222 223 0.609662 GTGCAAATTGGAGGGCATGT 59.390 50.000 0.00 0.00 38.68 3.21
223 224 0.609151 TGCAAATTGGAGGGCATGTG 59.391 50.000 0.00 0.00 0.00 3.21
224 225 0.741927 GCAAATTGGAGGGCATGTGC 60.742 55.000 0.00 0.00 41.14 4.57
225 226 0.458889 CAAATTGGAGGGCATGTGCG 60.459 55.000 0.00 0.00 43.26 5.34
226 227 0.611618 AAATTGGAGGGCATGTGCGA 60.612 50.000 0.00 0.00 43.26 5.10
227 228 0.611618 AATTGGAGGGCATGTGCGAA 60.612 50.000 0.00 0.00 43.26 4.70
228 229 1.033746 ATTGGAGGGCATGTGCGAAG 61.034 55.000 0.00 0.00 43.26 3.79
241 242 4.291047 CGAAGCATGTCACTGGCT 57.709 55.556 0.00 0.00 40.14 4.75
243 244 0.167470 CGAAGCATGTCACTGGCTTG 59.833 55.000 10.67 1.64 47.00 4.01
244 245 0.524862 GAAGCATGTCACTGGCTTGG 59.475 55.000 10.67 0.00 47.00 3.61
245 246 0.896940 AAGCATGTCACTGGCTTGGG 60.897 55.000 5.81 0.00 45.44 4.12
246 247 2.998279 GCATGTCACTGGCTTGGGC 61.998 63.158 0.00 0.00 37.82 5.36
247 248 1.604308 CATGTCACTGGCTTGGGCA 60.604 57.895 0.00 0.00 40.87 5.36
248 249 1.604593 ATGTCACTGGCTTGGGCAC 60.605 57.895 0.00 0.00 40.87 5.01
269 270 8.444715 GGGCACCGTTTTAAATTTTTAAATAGG 58.555 33.333 18.28 18.28 39.49 2.57
270 271 9.205719 GGCACCGTTTTAAATTTTTAAATAGGA 57.794 29.630 22.60 5.67 40.92 2.94
287 288 1.529309 GAGAGTGGCTCCCATTCCC 59.471 63.158 3.49 0.00 40.49 3.97
288 289 2.190578 GAGTGGCTCCCATTCCCG 59.809 66.667 0.00 0.00 34.73 5.14
289 290 2.610859 AGTGGCTCCCATTCCCGT 60.611 61.111 0.00 0.00 35.28 5.28
290 291 2.198304 GAGTGGCTCCCATTCCCGTT 62.198 60.000 0.00 0.00 34.73 4.44
291 292 1.749258 GTGGCTCCCATTCCCGTTC 60.749 63.158 0.00 0.00 35.28 3.95
292 293 2.227757 TGGCTCCCATTCCCGTTCA 61.228 57.895 0.00 0.00 0.00 3.18
293 294 1.452108 GGCTCCCATTCCCGTTCAG 60.452 63.158 0.00 0.00 0.00 3.02
294 295 1.452108 GCTCCCATTCCCGTTCAGG 60.452 63.158 0.00 0.00 40.63 3.86
295 296 1.910580 GCTCCCATTCCCGTTCAGGA 61.911 60.000 0.00 0.00 45.00 3.86
296 297 0.179000 CTCCCATTCCCGTTCAGGAG 59.821 60.000 0.00 0.00 45.00 3.69
297 298 1.224592 CCCATTCCCGTTCAGGAGG 59.775 63.158 0.00 0.00 45.00 4.30
304 305 1.826024 CCGTTCAGGAGGGAGATGG 59.174 63.158 0.00 0.00 45.00 3.51
305 306 1.144936 CGTTCAGGAGGGAGATGGC 59.855 63.158 0.00 0.00 0.00 4.40
306 307 1.144936 GTTCAGGAGGGAGATGGCG 59.855 63.158 0.00 0.00 0.00 5.69
307 308 1.001631 TTCAGGAGGGAGATGGCGA 59.998 57.895 0.00 0.00 0.00 5.54
308 309 1.045350 TTCAGGAGGGAGATGGCGAG 61.045 60.000 0.00 0.00 0.00 5.03
309 310 2.841988 AGGAGGGAGATGGCGAGC 60.842 66.667 0.00 0.00 0.00 5.03
310 311 3.157252 GGAGGGAGATGGCGAGCA 61.157 66.667 0.00 0.00 0.00 4.26
311 312 2.515071 GGAGGGAGATGGCGAGCAT 61.515 63.158 0.00 0.00 0.00 3.79
312 313 1.449353 GAGGGAGATGGCGAGCATT 59.551 57.895 0.00 0.00 0.00 3.56
313 314 0.883814 GAGGGAGATGGCGAGCATTG 60.884 60.000 0.00 0.00 0.00 2.82
325 326 4.360964 GCATTGCTGCCGCCACAA 62.361 61.111 0.16 0.00 42.88 3.33
326 327 2.431260 CATTGCTGCCGCCACAAC 60.431 61.111 0.00 0.00 34.43 3.32
327 328 4.041917 ATTGCTGCCGCCACAACG 62.042 61.111 0.00 0.00 34.43 4.10
335 336 3.102985 CGCCACAACGGTCAACAA 58.897 55.556 0.00 0.00 36.97 2.83
336 337 1.298041 CGCCACAACGGTCAACAAC 60.298 57.895 0.00 0.00 36.97 3.32
337 338 1.065109 GCCACAACGGTCAACAACC 59.935 57.895 0.00 0.00 45.45 3.77
338 339 1.381165 GCCACAACGGTCAACAACCT 61.381 55.000 0.00 0.00 46.87 3.50
339 340 0.661020 CCACAACGGTCAACAACCTC 59.339 55.000 0.00 0.00 46.87 3.85
340 341 0.661020 CACAACGGTCAACAACCTCC 59.339 55.000 0.00 0.00 46.87 4.30
341 342 0.812412 ACAACGGTCAACAACCTCCG 60.812 55.000 0.00 0.00 46.87 4.63
342 343 1.890510 AACGGTCAACAACCTCCGC 60.891 57.895 0.00 0.00 46.87 5.54
343 344 3.411351 CGGTCAACAACCTCCGCG 61.411 66.667 0.00 0.00 46.87 6.46
344 345 3.723348 GGTCAACAACCTCCGCGC 61.723 66.667 0.00 0.00 45.45 6.86
345 346 3.723348 GTCAACAACCTCCGCGCC 61.723 66.667 0.00 0.00 0.00 6.53
362 363 3.726517 CGGTTCCGCCACAAGCAG 61.727 66.667 0.00 0.00 44.04 4.24
363 364 4.043200 GGTTCCGCCACAAGCAGC 62.043 66.667 0.00 0.00 44.04 5.25
364 365 3.286751 GTTCCGCCACAAGCAGCA 61.287 61.111 0.00 0.00 44.04 4.41
365 366 2.979676 TTCCGCCACAAGCAGCAG 60.980 61.111 0.00 0.00 44.04 4.24
392 393 4.969196 CGCACCGACACCAGCACT 62.969 66.667 0.00 0.00 0.00 4.40
393 394 3.349006 GCACCGACACCAGCACTG 61.349 66.667 0.00 0.00 0.00 3.66
394 395 3.349006 CACCGACACCAGCACTGC 61.349 66.667 0.00 0.00 0.00 4.40
395 396 4.626081 ACCGACACCAGCACTGCC 62.626 66.667 0.00 0.00 0.00 4.85
398 399 4.996434 GACACCAGCACTGCCGCT 62.996 66.667 0.00 0.00 45.21 5.52
399 400 4.996434 ACACCAGCACTGCCGCTC 62.996 66.667 0.00 0.00 41.38 5.03
417 418 4.954933 CCCCCACGTATGTTCCTG 57.045 61.111 0.00 0.00 0.00 3.86
418 419 1.988015 CCCCCACGTATGTTCCTGT 59.012 57.895 0.00 0.00 0.00 4.00
419 420 0.392461 CCCCCACGTATGTTCCTGTG 60.392 60.000 0.00 0.00 0.00 3.66
420 421 1.024579 CCCCACGTATGTTCCTGTGC 61.025 60.000 0.00 0.00 0.00 4.57
421 422 1.024579 CCCACGTATGTTCCTGTGCC 61.025 60.000 0.00 0.00 0.00 5.01
422 423 1.024579 CCACGTATGTTCCTGTGCCC 61.025 60.000 0.00 0.00 0.00 5.36
423 424 0.321210 CACGTATGTTCCTGTGCCCA 60.321 55.000 0.00 0.00 0.00 5.36
424 425 0.321298 ACGTATGTTCCTGTGCCCAC 60.321 55.000 0.00 0.00 0.00 4.61
425 426 0.321210 CGTATGTTCCTGTGCCCACA 60.321 55.000 0.71 0.71 39.32 4.17
426 427 1.880221 CGTATGTTCCTGTGCCCACAA 60.880 52.381 2.45 0.00 41.33 3.33
427 428 1.539827 GTATGTTCCTGTGCCCACAAC 59.460 52.381 2.45 0.00 41.33 3.32
428 429 0.185901 ATGTTCCTGTGCCCACAACT 59.814 50.000 2.45 0.00 41.33 3.16
429 430 0.751277 TGTTCCTGTGCCCACAACTG 60.751 55.000 2.45 0.00 41.33 3.16
430 431 0.751643 GTTCCTGTGCCCACAACTGT 60.752 55.000 2.45 0.00 41.33 3.55
431 432 0.751277 TTCCTGTGCCCACAACTGTG 60.751 55.000 2.72 2.72 45.23 3.66
443 444 3.073274 ACAACTGTGAAATCCTAGCCC 57.927 47.619 0.00 0.00 0.00 5.19
444 445 2.375174 ACAACTGTGAAATCCTAGCCCA 59.625 45.455 0.00 0.00 0.00 5.36
445 446 2.749621 CAACTGTGAAATCCTAGCCCAC 59.250 50.000 0.00 0.00 0.00 4.61
446 447 1.066143 ACTGTGAAATCCTAGCCCACG 60.066 52.381 0.00 0.00 0.00 4.94
447 448 0.251916 TGTGAAATCCTAGCCCACGG 59.748 55.000 0.00 0.00 0.00 4.94
448 449 0.252197 GTGAAATCCTAGCCCACGGT 59.748 55.000 0.00 0.00 0.00 4.83
449 450 0.539986 TGAAATCCTAGCCCACGGTC 59.460 55.000 0.00 0.00 0.00 4.79
450 451 0.529992 GAAATCCTAGCCCACGGTCG 60.530 60.000 0.00 0.00 0.00 4.79
451 452 0.974010 AAATCCTAGCCCACGGTCGA 60.974 55.000 0.00 0.00 0.00 4.20
452 453 0.759436 AATCCTAGCCCACGGTCGAT 60.759 55.000 0.00 0.00 0.00 3.59
453 454 1.464376 ATCCTAGCCCACGGTCGATG 61.464 60.000 0.00 0.00 0.00 3.84
454 455 2.279517 CTAGCCCACGGTCGATGC 60.280 66.667 0.00 0.00 0.00 3.91
455 456 3.792053 CTAGCCCACGGTCGATGCC 62.792 68.421 0.00 0.00 0.00 4.40
465 466 2.186644 TCGATGCCGACCACATGG 59.813 61.111 0.00 0.00 40.30 3.66
466 467 2.186644 CGATGCCGACCACATGGA 59.813 61.111 4.53 0.00 38.94 3.41
467 468 1.449423 CGATGCCGACCACATGGAA 60.449 57.895 4.53 0.00 38.94 3.53
468 469 1.431488 CGATGCCGACCACATGGAAG 61.431 60.000 4.53 0.00 38.94 3.46
469 470 0.107703 GATGCCGACCACATGGAAGA 60.108 55.000 4.53 0.00 38.94 2.87
470 471 0.107508 ATGCCGACCACATGGAAGAG 60.108 55.000 4.53 0.00 38.94 2.85
471 472 1.191489 TGCCGACCACATGGAAGAGA 61.191 55.000 4.53 0.00 38.94 3.10
472 473 0.036388 GCCGACCACATGGAAGAGAA 60.036 55.000 4.53 0.00 38.94 2.87
473 474 1.726853 CCGACCACATGGAAGAGAAC 58.273 55.000 4.53 0.00 38.94 3.01
474 475 1.676014 CCGACCACATGGAAGAGAACC 60.676 57.143 4.53 0.00 38.94 3.62
475 476 1.676014 CGACCACATGGAAGAGAACCC 60.676 57.143 4.53 0.00 38.94 4.11
476 477 0.698818 ACCACATGGAAGAGAACCCC 59.301 55.000 4.53 0.00 38.94 4.95
477 478 0.392998 CCACATGGAAGAGAACCCCG 60.393 60.000 0.00 0.00 37.39 5.73
478 479 0.392998 CACATGGAAGAGAACCCCGG 60.393 60.000 0.00 0.00 0.00 5.73
479 480 1.452108 CATGGAAGAGAACCCCGGC 60.452 63.158 0.00 0.00 0.00 6.13
480 481 3.031417 ATGGAAGAGAACCCCGGCG 62.031 63.158 0.00 0.00 0.00 6.46
482 483 4.083862 GAAGAGAACCCCGGCGCT 62.084 66.667 7.64 0.00 0.00 5.92
483 484 4.394712 AAGAGAACCCCGGCGCTG 62.395 66.667 9.96 9.96 0.00 5.18
497 498 4.683334 GCTGTCCGCAACAACGCC 62.683 66.667 0.00 0.00 37.45 5.68
498 499 4.368808 CTGTCCGCAACAACGCCG 62.369 66.667 0.00 0.00 37.45 6.46
499 500 4.893601 TGTCCGCAACAACGCCGA 62.894 61.111 0.00 0.00 34.03 5.54
500 501 4.072088 GTCCGCAACAACGCCGAG 62.072 66.667 0.00 0.00 0.00 4.63
503 504 3.777925 CGCAACAACGCCGAGGAG 61.778 66.667 0.00 0.00 0.00 3.69
504 505 3.423154 GCAACAACGCCGAGGAGG 61.423 66.667 0.00 0.00 44.97 4.30
505 506 2.342279 CAACAACGCCGAGGAGGA 59.658 61.111 0.00 0.00 45.00 3.71
506 507 1.738099 CAACAACGCCGAGGAGGAG 60.738 63.158 0.00 0.00 45.00 3.69
507 508 2.943978 AACAACGCCGAGGAGGAGG 61.944 63.158 0.00 0.00 44.78 4.30
508 509 4.148825 CAACGCCGAGGAGGAGGG 62.149 72.222 0.00 0.00 44.78 4.30
513 514 3.474570 CCGAGGAGGAGGGGCAAG 61.475 72.222 0.00 0.00 45.00 4.01
514 515 3.474570 CGAGGAGGAGGGGCAAGG 61.475 72.222 0.00 0.00 0.00 3.61
515 516 3.093172 GAGGAGGAGGGGCAAGGG 61.093 72.222 0.00 0.00 0.00 3.95
516 517 4.767892 AGGAGGAGGGGCAAGGGG 62.768 72.222 0.00 0.00 0.00 4.79
518 519 4.760220 GAGGAGGGGCAAGGGGGA 62.760 72.222 0.00 0.00 0.00 4.81
519 520 4.767892 AGGAGGGGCAAGGGGGAG 62.768 72.222 0.00 0.00 0.00 4.30
525 526 3.732849 GGCAAGGGGGAGGGACTG 61.733 72.222 0.00 0.00 41.55 3.51
526 527 2.936032 GCAAGGGGGAGGGACTGT 60.936 66.667 0.00 0.00 41.55 3.55
527 528 2.539081 GCAAGGGGGAGGGACTGTT 61.539 63.158 0.00 0.00 41.55 3.16
528 529 1.380302 CAAGGGGGAGGGACTGTTG 59.620 63.158 0.00 0.00 41.55 3.33
529 530 1.852626 AAGGGGGAGGGACTGTTGG 60.853 63.158 0.00 0.00 41.55 3.77
530 531 4.048470 GGGGGAGGGACTGTTGGC 62.048 72.222 0.00 0.00 41.55 4.52
531 532 2.936032 GGGGAGGGACTGTTGGCT 60.936 66.667 0.00 0.00 41.55 4.75
532 533 1.615424 GGGGAGGGACTGTTGGCTA 60.615 63.158 0.00 0.00 41.55 3.93
533 534 1.627297 GGGGAGGGACTGTTGGCTAG 61.627 65.000 0.00 0.00 41.55 3.42
534 535 1.627297 GGGAGGGACTGTTGGCTAGG 61.627 65.000 0.00 0.00 41.55 3.02
535 536 0.910088 GGAGGGACTGTTGGCTAGGT 60.910 60.000 0.00 0.00 41.55 3.08
536 537 0.984995 GAGGGACTGTTGGCTAGGTT 59.015 55.000 0.00 0.00 41.55 3.50
537 538 2.185387 GAGGGACTGTTGGCTAGGTTA 58.815 52.381 0.00 0.00 41.55 2.85
538 539 1.907255 AGGGACTGTTGGCTAGGTTAC 59.093 52.381 0.00 0.00 37.18 2.50
539 540 1.907255 GGGACTGTTGGCTAGGTTACT 59.093 52.381 0.00 0.00 0.00 2.24
540 541 2.354805 GGGACTGTTGGCTAGGTTACTG 60.355 54.545 0.00 0.00 0.00 2.74
541 542 2.302157 GGACTGTTGGCTAGGTTACTGT 59.698 50.000 0.00 0.00 0.00 3.55
627 629 2.111384 GTGAGATCTACCTCCTTGGCA 58.889 52.381 0.00 0.00 40.22 4.92
634 636 2.843730 TCTACCTCCTTGGCATGCTAAA 59.156 45.455 17.73 11.46 40.22 1.85
660 662 7.183460 TCTTTTCTCCTAGTTAAGCTACCTCT 58.817 38.462 0.00 0.00 0.00 3.69
661 663 6.777213 TTTCTCCTAGTTAAGCTACCTCTG 57.223 41.667 0.00 0.00 0.00 3.35
667 669 6.724905 TCCTAGTTAAGCTACCTCTGAAAACT 59.275 38.462 0.00 0.00 0.00 2.66
674 676 2.550830 ACCTCTGAAAACTCGTGCAT 57.449 45.000 0.00 0.00 0.00 3.96
682 684 3.066621 TGAAAACTCGTGCATTTGCTTCT 59.933 39.130 3.94 0.00 42.66 2.85
791 1366 6.874134 TCACTCTCTGCAAGACTAAAATAACC 59.126 38.462 0.00 0.00 38.67 2.85
902 1585 3.616956 TGGCATCTTGTTCAGTAGAGG 57.383 47.619 0.00 0.00 0.00 3.69
1004 1695 3.064324 GGCTCCAAGCGCAATGGT 61.064 61.111 25.64 0.00 43.62 3.55
1124 1940 9.330063 TCATATATTTGCAACTCTAGTTTCCAG 57.670 33.333 0.00 0.00 35.83 3.86
1272 2088 3.305608 CCTGGTTTCATGTCTTTTGCTCC 60.306 47.826 0.00 0.00 0.00 4.70
1299 2115 1.606224 GGTTCCGTTGTCCGTGTGTAT 60.606 52.381 0.00 0.00 33.66 2.29
1305 2121 2.734606 CGTTGTCCGTGTGTATGTTCAT 59.265 45.455 0.00 0.00 0.00 2.57
1766 2592 7.758980 AGAAATGATAATTAACGTGCATTGCAA 59.241 29.630 13.94 0.00 41.47 4.08
1794 2627 7.915293 TGTATGTTAAACCACCAATACAGAG 57.085 36.000 0.00 0.00 0.00 3.35
2146 3085 1.079057 GTGGCGGGGAGAAGTTCTC 60.079 63.158 22.47 22.47 42.66 2.87
2164 3103 2.029288 CGTGCGACAAGGCTGATGT 61.029 57.895 0.00 0.00 0.00 3.06
2331 3272 1.406887 GCATAAACTCTTCTCCCCGCA 60.407 52.381 0.00 0.00 0.00 5.69
2716 3667 7.402054 TCTAGAAATAATGGAACTGGAAGCAA 58.598 34.615 0.00 0.00 37.60 3.91
2784 3735 7.553044 ACAGCTGAAGTTAATGGACCTAATTAC 59.447 37.037 23.35 0.00 0.00 1.89
2860 3811 6.254804 TGAAATGAGTATGAACGTATGAACCG 59.745 38.462 0.00 0.00 0.00 4.44
3023 3974 9.226345 CAACAAAGTCTCAAAGTCTCAAATAAC 57.774 33.333 0.00 0.00 0.00 1.89
3069 4020 2.677836 GCATGAAAACGAGATAGCCACA 59.322 45.455 0.00 0.00 0.00 4.17
3133 4084 2.498644 TACATGACCGCCATCCAAAA 57.501 45.000 0.00 0.00 31.94 2.44
3148 4099 4.015872 TCCAAAACGGTTGAAGATAGCT 57.984 40.909 0.00 0.00 35.57 3.32
3149 4100 4.394729 TCCAAAACGGTTGAAGATAGCTT 58.605 39.130 0.00 0.00 34.56 3.74
3167 4118 0.981183 TTGTGCTACCGTCTCCCAAT 59.019 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.179756 TCTCCACATATTTGCTAGCAAGAAA 58.820 36.000 27.82 15.82 37.24 2.52
1 2 5.744171 TCTCCACATATTTGCTAGCAAGAA 58.256 37.500 27.82 20.43 37.24 2.52
2 3 5.357742 TCTCCACATATTTGCTAGCAAGA 57.642 39.130 27.82 20.66 37.24 3.02
3 4 5.587844 ACTTCTCCACATATTTGCTAGCAAG 59.412 40.000 27.82 19.33 37.24 4.01
4 5 5.500234 ACTTCTCCACATATTTGCTAGCAA 58.500 37.500 26.06 26.06 0.00 3.91
5 6 5.102953 ACTTCTCCACATATTTGCTAGCA 57.897 39.130 14.93 14.93 0.00 3.49
6 7 5.586243 TGAACTTCTCCACATATTTGCTAGC 59.414 40.000 8.10 8.10 0.00 3.42
7 8 7.044181 TCTGAACTTCTCCACATATTTGCTAG 58.956 38.462 0.00 0.00 0.00 3.42
8 9 6.946340 TCTGAACTTCTCCACATATTTGCTA 58.054 36.000 0.00 0.00 0.00 3.49
9 10 5.809001 TCTGAACTTCTCCACATATTTGCT 58.191 37.500 0.00 0.00 0.00 3.91
10 11 5.877012 TCTCTGAACTTCTCCACATATTTGC 59.123 40.000 0.00 0.00 0.00 3.68
11 12 9.605275 TTATCTCTGAACTTCTCCACATATTTG 57.395 33.333 0.00 0.00 0.00 2.32
13 14 9.775854 CATTATCTCTGAACTTCTCCACATATT 57.224 33.333 0.00 0.00 0.00 1.28
14 15 9.152327 TCATTATCTCTGAACTTCTCCACATAT 57.848 33.333 0.00 0.00 0.00 1.78
15 16 8.539117 TCATTATCTCTGAACTTCTCCACATA 57.461 34.615 0.00 0.00 0.00 2.29
16 17 7.344093 TCTCATTATCTCTGAACTTCTCCACAT 59.656 37.037 0.00 0.00 0.00 3.21
17 18 6.665248 TCTCATTATCTCTGAACTTCTCCACA 59.335 38.462 0.00 0.00 0.00 4.17
18 19 7.106439 TCTCATTATCTCTGAACTTCTCCAC 57.894 40.000 0.00 0.00 0.00 4.02
19 20 7.617329 TCTTCTCATTATCTCTGAACTTCTCCA 59.383 37.037 0.00 0.00 0.00 3.86
20 21 8.006298 TCTTCTCATTATCTCTGAACTTCTCC 57.994 38.462 0.00 0.00 0.00 3.71
40 41 9.950496 TTGAAAATGTAGCTAGAGAAATCTTCT 57.050 29.630 0.00 0.00 44.21 2.85
42 43 9.171877 CCTTGAAAATGTAGCTAGAGAAATCTT 57.828 33.333 0.00 0.00 0.00 2.40
43 44 8.543774 TCCTTGAAAATGTAGCTAGAGAAATCT 58.456 33.333 0.00 0.00 0.00 2.40
44 45 8.723942 TCCTTGAAAATGTAGCTAGAGAAATC 57.276 34.615 0.00 0.00 0.00 2.17
45 46 9.520515 TTTCCTTGAAAATGTAGCTAGAGAAAT 57.479 29.630 0.00 0.00 0.00 2.17
46 47 8.918202 TTTCCTTGAAAATGTAGCTAGAGAAA 57.082 30.769 0.00 0.00 0.00 2.52
47 48 8.157476 ACTTTCCTTGAAAATGTAGCTAGAGAA 58.843 33.333 0.00 0.00 30.84 2.87
48 49 7.680730 ACTTTCCTTGAAAATGTAGCTAGAGA 58.319 34.615 0.00 0.00 30.84 3.10
49 50 7.913674 ACTTTCCTTGAAAATGTAGCTAGAG 57.086 36.000 0.00 0.00 30.84 2.43
50 51 8.567948 CAAACTTTCCTTGAAAATGTAGCTAGA 58.432 33.333 0.00 0.00 30.84 2.43
51 52 7.809806 CCAAACTTTCCTTGAAAATGTAGCTAG 59.190 37.037 0.00 0.00 30.84 3.42
52 53 7.504238 TCCAAACTTTCCTTGAAAATGTAGCTA 59.496 33.333 0.00 0.00 30.84 3.32
53 54 6.323739 TCCAAACTTTCCTTGAAAATGTAGCT 59.676 34.615 0.00 0.00 30.84 3.32
54 55 6.512297 TCCAAACTTTCCTTGAAAATGTAGC 58.488 36.000 0.00 0.00 30.84 3.58
55 56 8.413229 TCTTCCAAACTTTCCTTGAAAATGTAG 58.587 33.333 0.00 0.00 30.84 2.74
56 57 8.299990 TCTTCCAAACTTTCCTTGAAAATGTA 57.700 30.769 0.00 0.00 30.84 2.29
57 58 7.181569 TCTTCCAAACTTTCCTTGAAAATGT 57.818 32.000 0.00 0.00 30.84 2.71
58 59 8.491331 TTTCTTCCAAACTTTCCTTGAAAATG 57.509 30.769 0.00 0.00 30.84 2.32
59 60 9.685276 AATTTCTTCCAAACTTTCCTTGAAAAT 57.315 25.926 0.00 0.00 30.84 1.82
60 61 9.513906 AAATTTCTTCCAAACTTTCCTTGAAAA 57.486 25.926 0.00 0.00 30.84 2.29
63 64 9.594478 GTTAAATTTCTTCCAAACTTTCCTTGA 57.406 29.630 0.00 0.00 0.00 3.02
64 65 9.377312 TGTTAAATTTCTTCCAAACTTTCCTTG 57.623 29.630 0.00 0.00 0.00 3.61
66 67 9.546428 CATGTTAAATTTCTTCCAAACTTTCCT 57.454 29.630 0.00 0.00 0.00 3.36
67 68 8.773645 CCATGTTAAATTTCTTCCAAACTTTCC 58.226 33.333 0.00 0.00 0.00 3.13
68 69 9.541143 TCCATGTTAAATTTCTTCCAAACTTTC 57.459 29.630 0.00 0.00 0.00 2.62
69 70 9.898152 TTCCATGTTAAATTTCTTCCAAACTTT 57.102 25.926 0.00 0.00 0.00 2.66
70 71 9.546428 CTTCCATGTTAAATTTCTTCCAAACTT 57.454 29.630 0.00 0.00 0.00 2.66
71 72 8.704668 ACTTCCATGTTAAATTTCTTCCAAACT 58.295 29.630 0.00 0.00 0.00 2.66
72 73 8.887036 ACTTCCATGTTAAATTTCTTCCAAAC 57.113 30.769 0.00 0.00 0.00 2.93
75 76 8.303876 GCTAACTTCCATGTTAAATTTCTTCCA 58.696 33.333 0.00 0.00 32.80 3.53
76 77 8.303876 TGCTAACTTCCATGTTAAATTTCTTCC 58.696 33.333 0.00 0.00 32.80 3.46
77 78 9.346725 CTGCTAACTTCCATGTTAAATTTCTTC 57.653 33.333 0.00 0.00 32.80 2.87
78 79 9.077885 TCTGCTAACTTCCATGTTAAATTTCTT 57.922 29.630 0.00 0.00 32.80 2.52
79 80 8.515414 GTCTGCTAACTTCCATGTTAAATTTCT 58.485 33.333 0.00 0.00 32.80 2.52
80 81 8.296713 TGTCTGCTAACTTCCATGTTAAATTTC 58.703 33.333 0.00 0.00 32.80 2.17
81 82 8.082242 GTGTCTGCTAACTTCCATGTTAAATTT 58.918 33.333 0.00 0.00 32.80 1.82
82 83 7.230510 TGTGTCTGCTAACTTCCATGTTAAATT 59.769 33.333 0.00 0.00 32.80 1.82
83 84 6.714810 TGTGTCTGCTAACTTCCATGTTAAAT 59.285 34.615 0.00 0.00 32.80 1.40
84 85 6.058833 TGTGTCTGCTAACTTCCATGTTAAA 58.941 36.000 0.00 0.00 32.80 1.52
85 86 5.616270 TGTGTCTGCTAACTTCCATGTTAA 58.384 37.500 0.00 0.00 32.80 2.01
86 87 5.222079 TGTGTCTGCTAACTTCCATGTTA 57.778 39.130 0.00 0.00 0.00 2.41
87 88 4.085357 TGTGTCTGCTAACTTCCATGTT 57.915 40.909 0.00 0.00 0.00 2.71
88 89 3.769739 TGTGTCTGCTAACTTCCATGT 57.230 42.857 0.00 0.00 0.00 3.21
89 90 3.120060 GCTTGTGTCTGCTAACTTCCATG 60.120 47.826 0.00 0.00 0.00 3.66
90 91 3.077359 GCTTGTGTCTGCTAACTTCCAT 58.923 45.455 0.00 0.00 0.00 3.41
91 92 2.104792 AGCTTGTGTCTGCTAACTTCCA 59.895 45.455 0.00 0.00 37.81 3.53
92 93 2.772287 AGCTTGTGTCTGCTAACTTCC 58.228 47.619 0.00 0.00 37.81 3.46
93 94 3.929610 CCTAGCTTGTGTCTGCTAACTTC 59.070 47.826 0.00 0.00 40.65 3.01
94 95 3.325135 ACCTAGCTTGTGTCTGCTAACTT 59.675 43.478 0.00 0.00 40.65 2.66
95 96 2.900546 ACCTAGCTTGTGTCTGCTAACT 59.099 45.455 0.00 0.00 40.65 2.24
96 97 3.320673 ACCTAGCTTGTGTCTGCTAAC 57.679 47.619 0.00 0.00 40.65 2.34
97 98 4.341487 TCTACCTAGCTTGTGTCTGCTAA 58.659 43.478 0.00 0.00 40.65 3.09
98 99 3.948473 CTCTACCTAGCTTGTGTCTGCTA 59.052 47.826 0.00 0.00 40.35 3.49
99 100 2.757868 CTCTACCTAGCTTGTGTCTGCT 59.242 50.000 0.00 0.00 42.67 4.24
100 101 2.737039 GCTCTACCTAGCTTGTGTCTGC 60.737 54.545 0.00 0.00 39.50 4.26
101 102 3.157932 GCTCTACCTAGCTTGTGTCTG 57.842 52.381 0.00 0.00 39.50 3.51
110 111 3.653539 GCTTTCCTAGCTCTACCTAGC 57.346 52.381 0.00 0.00 46.77 3.42
121 122 3.128242 CACTTCCAATGCTGCTTTCCTAG 59.872 47.826 0.00 0.63 0.00 3.02
122 123 3.084039 CACTTCCAATGCTGCTTTCCTA 58.916 45.455 0.00 0.00 0.00 2.94
123 124 1.891150 CACTTCCAATGCTGCTTTCCT 59.109 47.619 0.00 0.00 0.00 3.36
124 125 1.067354 CCACTTCCAATGCTGCTTTCC 60.067 52.381 0.00 0.00 0.00 3.13
125 126 1.615392 ACCACTTCCAATGCTGCTTTC 59.385 47.619 0.00 0.00 0.00 2.62
126 127 1.342174 CACCACTTCCAATGCTGCTTT 59.658 47.619 0.00 0.00 0.00 3.51
127 128 0.963962 CACCACTTCCAATGCTGCTT 59.036 50.000 0.00 0.00 0.00 3.91
128 129 1.530013 GCACCACTTCCAATGCTGCT 61.530 55.000 0.00 0.00 35.16 4.24
129 130 1.080298 GCACCACTTCCAATGCTGC 60.080 57.895 0.00 0.00 35.16 5.25
130 131 0.892755 ATGCACCACTTCCAATGCTG 59.107 50.000 0.00 0.00 38.90 4.41
131 132 0.892755 CATGCACCACTTCCAATGCT 59.107 50.000 0.00 0.00 38.90 3.79
132 133 0.108520 CCATGCACCACTTCCAATGC 60.109 55.000 0.00 0.00 38.59 3.56
133 134 0.533491 CCCATGCACCACTTCCAATG 59.467 55.000 0.00 0.00 0.00 2.82
134 135 0.615544 CCCCATGCACCACTTCCAAT 60.616 55.000 0.00 0.00 0.00 3.16
135 136 1.228831 CCCCATGCACCACTTCCAA 60.229 57.895 0.00 0.00 0.00 3.53
136 137 1.508667 ATCCCCATGCACCACTTCCA 61.509 55.000 0.00 0.00 0.00 3.53
137 138 1.039233 CATCCCCATGCACCACTTCC 61.039 60.000 0.00 0.00 0.00 3.46
138 139 0.034186 TCATCCCCATGCACCACTTC 60.034 55.000 0.00 0.00 0.00 3.01
139 140 0.033796 CTCATCCCCATGCACCACTT 60.034 55.000 0.00 0.00 0.00 3.16
140 141 1.611419 CTCATCCCCATGCACCACT 59.389 57.895 0.00 0.00 0.00 4.00
141 142 1.454479 CCTCATCCCCATGCACCAC 60.454 63.158 0.00 0.00 0.00 4.16
142 143 1.930133 ACCTCATCCCCATGCACCA 60.930 57.895 0.00 0.00 0.00 4.17
143 144 1.454479 CACCTCATCCCCATGCACC 60.454 63.158 0.00 0.00 0.00 5.01
144 145 0.034186 TTCACCTCATCCCCATGCAC 60.034 55.000 0.00 0.00 0.00 4.57
145 146 0.256752 CTTCACCTCATCCCCATGCA 59.743 55.000 0.00 0.00 0.00 3.96
146 147 1.105759 GCTTCACCTCATCCCCATGC 61.106 60.000 0.00 0.00 0.00 4.06
147 148 0.256752 TGCTTCACCTCATCCCCATG 59.743 55.000 0.00 0.00 0.00 3.66
148 149 0.549950 CTGCTTCACCTCATCCCCAT 59.450 55.000 0.00 0.00 0.00 4.00
149 150 0.842030 ACTGCTTCACCTCATCCCCA 60.842 55.000 0.00 0.00 0.00 4.96
150 151 1.134371 GTACTGCTTCACCTCATCCCC 60.134 57.143 0.00 0.00 0.00 4.81
151 152 1.134371 GGTACTGCTTCACCTCATCCC 60.134 57.143 0.00 0.00 0.00 3.85
152 153 1.834263 AGGTACTGCTTCACCTCATCC 59.166 52.381 0.00 0.00 41.44 3.51
153 154 3.265791 CAAGGTACTGCTTCACCTCATC 58.734 50.000 4.49 0.00 44.55 2.92
154 155 2.639839 ACAAGGTACTGCTTCACCTCAT 59.360 45.455 4.49 0.00 44.55 2.90
155 156 2.047061 ACAAGGTACTGCTTCACCTCA 58.953 47.619 4.49 0.00 44.55 3.86
156 157 2.841442 ACAAGGTACTGCTTCACCTC 57.159 50.000 4.49 0.00 44.55 3.85
158 159 1.798813 CGAACAAGGTACTGCTTCACC 59.201 52.381 0.00 0.00 40.86 4.02
159 160 2.480845 ACGAACAAGGTACTGCTTCAC 58.519 47.619 0.00 0.00 40.86 3.18
160 161 2.902705 ACGAACAAGGTACTGCTTCA 57.097 45.000 0.00 0.00 40.86 3.02
161 162 4.053295 TGTTACGAACAAGGTACTGCTTC 58.947 43.478 0.00 0.00 40.86 3.86
162 163 4.056050 CTGTTACGAACAAGGTACTGCTT 58.944 43.478 0.00 0.00 41.61 3.91
163 164 3.069158 ACTGTTACGAACAAGGTACTGCT 59.931 43.478 0.00 0.00 41.61 4.24
164 165 3.387397 ACTGTTACGAACAAGGTACTGC 58.613 45.455 0.00 0.00 41.61 4.40
165 166 6.005583 TCTACTGTTACGAACAAGGTACTG 57.994 41.667 0.00 0.00 41.61 2.74
166 167 6.488006 TCTTCTACTGTTACGAACAAGGTACT 59.512 38.462 0.00 0.00 41.61 2.73
167 168 6.672147 TCTTCTACTGTTACGAACAAGGTAC 58.328 40.000 0.00 0.00 41.61 3.34
168 169 6.882610 TCTTCTACTGTTACGAACAAGGTA 57.117 37.500 0.00 0.00 41.61 3.08
169 170 5.779529 TCTTCTACTGTTACGAACAAGGT 57.220 39.130 0.00 0.00 41.61 3.50
170 171 6.645415 ACAATCTTCTACTGTTACGAACAAGG 59.355 38.462 0.00 0.00 41.61 3.61
171 172 7.409449 CGACAATCTTCTACTGTTACGAACAAG 60.409 40.741 0.00 0.00 41.61 3.16
172 173 6.361481 CGACAATCTTCTACTGTTACGAACAA 59.639 38.462 0.00 0.00 41.61 2.83
173 174 5.854866 CGACAATCTTCTACTGTTACGAACA 59.145 40.000 0.00 0.00 39.52 3.18
174 175 6.082338 TCGACAATCTTCTACTGTTACGAAC 58.918 40.000 0.00 0.00 0.00 3.95
175 176 6.245115 TCGACAATCTTCTACTGTTACGAA 57.755 37.500 0.00 0.00 0.00 3.85
176 177 5.868043 TCGACAATCTTCTACTGTTACGA 57.132 39.130 0.00 0.00 0.00 3.43
177 178 5.003590 GCTTCGACAATCTTCTACTGTTACG 59.996 44.000 0.00 0.00 0.00 3.18
178 179 5.862323 TGCTTCGACAATCTTCTACTGTTAC 59.138 40.000 0.00 0.00 0.00 2.50
179 180 6.020971 TGCTTCGACAATCTTCTACTGTTA 57.979 37.500 0.00 0.00 0.00 2.41
180 181 4.883083 TGCTTCGACAATCTTCTACTGTT 58.117 39.130 0.00 0.00 0.00 3.16
181 182 4.021894 ACTGCTTCGACAATCTTCTACTGT 60.022 41.667 0.00 0.00 0.00 3.55
182 183 4.325741 CACTGCTTCGACAATCTTCTACTG 59.674 45.833 0.00 0.00 0.00 2.74
183 184 4.489810 CACTGCTTCGACAATCTTCTACT 58.510 43.478 0.00 0.00 0.00 2.57
184 185 3.061429 GCACTGCTTCGACAATCTTCTAC 59.939 47.826 0.00 0.00 0.00 2.59
185 186 3.254060 GCACTGCTTCGACAATCTTCTA 58.746 45.455 0.00 0.00 0.00 2.10
186 187 2.072298 GCACTGCTTCGACAATCTTCT 58.928 47.619 0.00 0.00 0.00 2.85
187 188 1.800586 TGCACTGCTTCGACAATCTTC 59.199 47.619 1.98 0.00 0.00 2.87
188 189 1.882912 TGCACTGCTTCGACAATCTT 58.117 45.000 1.98 0.00 0.00 2.40
189 190 1.882912 TTGCACTGCTTCGACAATCT 58.117 45.000 1.98 0.00 0.00 2.40
190 191 2.686558 TTTGCACTGCTTCGACAATC 57.313 45.000 1.98 0.00 0.00 2.67
191 192 3.311106 CAATTTGCACTGCTTCGACAAT 58.689 40.909 1.98 0.00 0.00 2.71
192 193 2.543445 CCAATTTGCACTGCTTCGACAA 60.543 45.455 1.98 0.00 0.00 3.18
193 194 1.001487 CCAATTTGCACTGCTTCGACA 60.001 47.619 1.98 0.00 0.00 4.35
194 195 1.266718 TCCAATTTGCACTGCTTCGAC 59.733 47.619 1.98 0.00 0.00 4.20
195 196 1.536766 CTCCAATTTGCACTGCTTCGA 59.463 47.619 1.98 0.00 0.00 3.71
196 197 1.401931 CCTCCAATTTGCACTGCTTCG 60.402 52.381 1.98 0.00 0.00 3.79
197 198 1.067354 CCCTCCAATTTGCACTGCTTC 60.067 52.381 1.98 0.00 0.00 3.86
198 199 0.971386 CCCTCCAATTTGCACTGCTT 59.029 50.000 1.98 0.00 0.00 3.91
199 200 1.538687 GCCCTCCAATTTGCACTGCT 61.539 55.000 1.98 0.00 0.00 4.24
200 201 1.079612 GCCCTCCAATTTGCACTGC 60.080 57.895 0.00 0.00 0.00 4.40
201 202 0.899720 ATGCCCTCCAATTTGCACTG 59.100 50.000 0.00 0.00 36.41 3.66
202 203 0.899720 CATGCCCTCCAATTTGCACT 59.100 50.000 0.00 0.00 36.41 4.40
203 204 0.609662 ACATGCCCTCCAATTTGCAC 59.390 50.000 0.00 0.00 36.41 4.57
204 205 0.609151 CACATGCCCTCCAATTTGCA 59.391 50.000 0.00 0.00 38.23 4.08
205 206 0.741927 GCACATGCCCTCCAATTTGC 60.742 55.000 0.00 0.00 34.31 3.68
206 207 0.458889 CGCACATGCCCTCCAATTTG 60.459 55.000 0.00 0.00 37.91 2.32
207 208 0.611618 TCGCACATGCCCTCCAATTT 60.612 50.000 0.00 0.00 37.91 1.82
208 209 0.611618 TTCGCACATGCCCTCCAATT 60.612 50.000 0.00 0.00 37.91 2.32
209 210 1.001020 TTCGCACATGCCCTCCAAT 60.001 52.632 0.00 0.00 37.91 3.16
210 211 1.675310 CTTCGCACATGCCCTCCAA 60.675 57.895 0.00 0.00 37.91 3.53
211 212 2.046023 CTTCGCACATGCCCTCCA 60.046 61.111 0.00 0.00 37.91 3.86
212 213 3.512516 GCTTCGCACATGCCCTCC 61.513 66.667 0.00 0.00 37.91 4.30
213 214 2.117156 ATGCTTCGCACATGCCCTC 61.117 57.895 0.00 0.00 43.04 4.30
214 215 2.044650 ATGCTTCGCACATGCCCT 60.045 55.556 0.00 0.00 43.04 5.19
215 216 2.103538 CATGCTTCGCACATGCCC 59.896 61.111 0.00 0.00 43.04 5.36
219 220 0.800631 CAGTGACATGCTTCGCACAT 59.199 50.000 0.00 0.00 43.04 3.21
220 221 1.229975 CCAGTGACATGCTTCGCACA 61.230 55.000 0.00 0.00 43.04 4.57
221 222 1.499056 CCAGTGACATGCTTCGCAC 59.501 57.895 0.00 0.00 43.04 5.34
222 223 2.327343 GCCAGTGACATGCTTCGCA 61.327 57.895 0.00 0.00 44.86 5.10
223 224 1.580845 AAGCCAGTGACATGCTTCGC 61.581 55.000 5.88 0.00 41.23 4.70
224 225 0.167470 CAAGCCAGTGACATGCTTCG 59.833 55.000 8.37 2.68 43.10 3.79
225 226 0.524862 CCAAGCCAGTGACATGCTTC 59.475 55.000 8.37 0.00 43.10 3.86
226 227 0.896940 CCCAAGCCAGTGACATGCTT 60.897 55.000 5.88 5.88 45.69 3.91
227 228 1.303888 CCCAAGCCAGTGACATGCT 60.304 57.895 0.00 0.00 36.79 3.79
228 229 2.998279 GCCCAAGCCAGTGACATGC 61.998 63.158 0.00 0.00 0.00 4.06
229 230 1.604308 TGCCCAAGCCAGTGACATG 60.604 57.895 0.00 0.00 38.69 3.21
230 231 1.604593 GTGCCCAAGCCAGTGACAT 60.605 57.895 0.00 0.00 38.69 3.06
231 232 2.203337 GTGCCCAAGCCAGTGACA 60.203 61.111 0.00 0.00 38.69 3.58
232 233 2.985847 GGTGCCCAAGCCAGTGAC 60.986 66.667 0.00 0.00 38.69 3.67
233 234 4.641645 CGGTGCCCAAGCCAGTGA 62.642 66.667 0.00 0.00 38.69 3.41
234 235 4.954970 ACGGTGCCCAAGCCAGTG 62.955 66.667 0.00 0.00 38.69 3.66
235 236 3.731766 AAACGGTGCCCAAGCCAGT 62.732 57.895 0.00 0.00 38.69 4.00
236 237 1.175983 TAAAACGGTGCCCAAGCCAG 61.176 55.000 0.00 0.00 38.69 4.85
237 238 0.755698 TTAAAACGGTGCCCAAGCCA 60.756 50.000 0.00 0.00 38.69 4.75
238 239 0.389757 TTTAAAACGGTGCCCAAGCC 59.610 50.000 0.00 0.00 38.69 4.35
239 240 2.448926 ATTTAAAACGGTGCCCAAGC 57.551 45.000 0.00 0.00 40.48 4.01
240 241 5.743026 AAAAATTTAAAACGGTGCCCAAG 57.257 34.783 0.00 0.00 0.00 3.61
241 242 7.619964 TTTAAAAATTTAAAACGGTGCCCAA 57.380 28.000 8.27 0.00 39.06 4.12
242 243 7.803279 ATTTAAAAATTTAAAACGGTGCCCA 57.197 28.000 13.34 0.00 43.43 5.36
243 244 8.444715 CCTATTTAAAAATTTAAAACGGTGCCC 58.555 33.333 13.34 0.00 43.43 5.36
244 245 9.205719 TCCTATTTAAAAATTTAAAACGGTGCC 57.794 29.630 13.34 0.00 43.43 5.01
269 270 1.529309 GGGAATGGGAGCCACTCTC 59.471 63.158 0.00 0.00 35.80 3.20
270 271 2.370445 CGGGAATGGGAGCCACTCT 61.370 63.158 0.00 0.00 35.80 3.24
271 272 2.190578 CGGGAATGGGAGCCACTC 59.809 66.667 0.00 0.00 35.80 3.51
272 273 2.198304 GAACGGGAATGGGAGCCACT 62.198 60.000 0.00 0.00 35.80 4.00
273 274 1.749258 GAACGGGAATGGGAGCCAC 60.749 63.158 0.00 0.00 35.80 5.01
274 275 2.196997 CTGAACGGGAATGGGAGCCA 62.197 60.000 0.00 0.00 38.19 4.75
275 276 1.452108 CTGAACGGGAATGGGAGCC 60.452 63.158 0.00 0.00 0.00 4.70
276 277 1.452108 CCTGAACGGGAATGGGAGC 60.452 63.158 0.00 0.00 0.00 4.70
277 278 0.179000 CTCCTGAACGGGAATGGGAG 59.821 60.000 3.89 0.00 34.66 4.30
278 279 1.271840 CCTCCTGAACGGGAATGGGA 61.272 60.000 3.89 0.00 34.66 4.37
279 280 1.224592 CCTCCTGAACGGGAATGGG 59.775 63.158 3.89 0.00 34.66 4.00
280 281 1.224592 CCCTCCTGAACGGGAATGG 59.775 63.158 3.89 4.12 43.44 3.16
281 282 2.296920 TCCCTCCTGAACGGGAATG 58.703 57.895 3.89 0.00 46.24 2.67
282 283 4.910613 TCCCTCCTGAACGGGAAT 57.089 55.556 3.89 0.00 46.24 3.01
285 286 1.690219 CCATCTCCCTCCTGAACGGG 61.690 65.000 0.00 0.00 42.05 5.28
286 287 1.826024 CCATCTCCCTCCTGAACGG 59.174 63.158 0.00 0.00 0.00 4.44
287 288 1.144936 GCCATCTCCCTCCTGAACG 59.855 63.158 0.00 0.00 0.00 3.95
288 289 1.144936 CGCCATCTCCCTCCTGAAC 59.855 63.158 0.00 0.00 0.00 3.18
289 290 1.001631 TCGCCATCTCCCTCCTGAA 59.998 57.895 0.00 0.00 0.00 3.02
290 291 1.456518 CTCGCCATCTCCCTCCTGA 60.457 63.158 0.00 0.00 0.00 3.86
291 292 3.136750 CTCGCCATCTCCCTCCTG 58.863 66.667 0.00 0.00 0.00 3.86
292 293 2.841988 GCTCGCCATCTCCCTCCT 60.842 66.667 0.00 0.00 0.00 3.69
293 294 2.049627 AATGCTCGCCATCTCCCTCC 62.050 60.000 0.00 0.00 31.43 4.30
294 295 0.883814 CAATGCTCGCCATCTCCCTC 60.884 60.000 0.00 0.00 31.43 4.30
295 296 1.147824 CAATGCTCGCCATCTCCCT 59.852 57.895 0.00 0.00 31.43 4.20
296 297 2.550101 GCAATGCTCGCCATCTCCC 61.550 63.158 0.00 0.00 31.43 4.30
297 298 1.525535 AGCAATGCTCGCCATCTCC 60.526 57.895 0.00 0.00 30.62 3.71
298 299 1.647629 CAGCAATGCTCGCCATCTC 59.352 57.895 4.03 0.00 36.40 2.75
299 300 2.478890 GCAGCAATGCTCGCCATCT 61.479 57.895 4.03 0.00 36.40 2.90
300 301 2.025727 GCAGCAATGCTCGCCATC 59.974 61.111 4.03 0.00 36.40 3.51
301 302 3.524606 GGCAGCAATGCTCGCCAT 61.525 61.111 29.96 0.66 45.27 4.40
318 319 1.298041 GTTGTTGACCGTTGTGGCG 60.298 57.895 0.00 0.00 43.94 5.69
319 320 1.065109 GGTTGTTGACCGTTGTGGC 59.935 57.895 0.00 0.00 43.94 5.01
328 329 3.723348 GGCGCGGAGGTTGTTGAC 61.723 66.667 8.83 0.00 0.00 3.18
352 353 3.606065 CTTCGCTGCTGCTTGTGGC 62.606 63.158 14.03 0.00 42.22 5.01
353 354 2.559840 CTTCGCTGCTGCTTGTGG 59.440 61.111 14.03 0.00 36.97 4.17
354 355 2.126965 GCTTCGCTGCTGCTTGTG 60.127 61.111 14.03 0.78 36.97 3.33
355 356 3.360340 GGCTTCGCTGCTGCTTGT 61.360 61.111 14.03 0.00 36.97 3.16
356 357 4.456253 CGGCTTCGCTGCTGCTTG 62.456 66.667 14.03 4.72 36.97 4.01
375 376 4.969196 AGTGCTGGTGTCGGTGCG 62.969 66.667 0.00 0.00 0.00 5.34
376 377 3.349006 CAGTGCTGGTGTCGGTGC 61.349 66.667 0.00 0.00 0.00 5.01
377 378 3.349006 GCAGTGCTGGTGTCGGTG 61.349 66.667 8.18 0.00 0.00 4.94
378 379 4.626081 GGCAGTGCTGGTGTCGGT 62.626 66.667 16.11 0.00 0.00 4.69
381 382 4.996434 AGCGGCAGTGCTGGTGTC 62.996 66.667 27.11 9.43 44.32 3.67
382 383 4.996434 GAGCGGCAGTGCTGGTGT 62.996 66.667 32.12 8.19 46.07 4.16
400 401 0.392461 CACAGGAACATACGTGGGGG 60.392 60.000 0.00 0.00 0.00 5.40
401 402 1.024579 GCACAGGAACATACGTGGGG 61.025 60.000 0.00 0.00 30.97 4.96
402 403 1.024579 GGCACAGGAACATACGTGGG 61.025 60.000 0.00 0.00 33.05 4.61
403 404 1.024579 GGGCACAGGAACATACGTGG 61.025 60.000 0.00 0.00 0.00 4.94
404 405 0.321210 TGGGCACAGGAACATACGTG 60.321 55.000 0.00 0.00 0.00 4.49
405 406 0.321298 GTGGGCACAGGAACATACGT 60.321 55.000 0.00 0.00 0.00 3.57
406 407 0.321210 TGTGGGCACAGGAACATACG 60.321 55.000 0.00 0.00 36.21 3.06
407 408 1.539827 GTTGTGGGCACAGGAACATAC 59.460 52.381 6.00 0.00 42.94 2.39
408 409 1.423541 AGTTGTGGGCACAGGAACATA 59.576 47.619 12.23 0.00 42.94 2.29
409 410 0.185901 AGTTGTGGGCACAGGAACAT 59.814 50.000 12.23 0.00 42.94 2.71
410 411 0.751277 CAGTTGTGGGCACAGGAACA 60.751 55.000 12.23 0.00 42.94 3.18
411 412 0.751643 ACAGTTGTGGGCACAGGAAC 60.752 55.000 0.00 0.00 42.94 3.62
412 413 0.751277 CACAGTTGTGGGCACAGGAA 60.751 55.000 4.34 0.00 42.94 3.36
413 414 1.152984 CACAGTTGTGGGCACAGGA 60.153 57.895 4.34 0.00 42.94 3.86
414 415 0.751277 TTCACAGTTGTGGGCACAGG 60.751 55.000 11.98 0.00 45.65 4.00
415 416 1.102154 TTTCACAGTTGTGGGCACAG 58.898 50.000 11.98 0.00 45.65 3.66
416 417 1.680735 GATTTCACAGTTGTGGGCACA 59.319 47.619 11.98 0.00 45.65 4.57
417 418 1.000274 GGATTTCACAGTTGTGGGCAC 60.000 52.381 11.98 0.00 45.65 5.01
418 419 1.133513 AGGATTTCACAGTTGTGGGCA 60.134 47.619 11.98 0.00 45.65 5.36
419 420 1.620822 AGGATTTCACAGTTGTGGGC 58.379 50.000 11.98 0.55 45.65 5.36
420 421 2.749621 GCTAGGATTTCACAGTTGTGGG 59.250 50.000 11.98 0.00 45.65 4.61
421 422 2.749621 GGCTAGGATTTCACAGTTGTGG 59.250 50.000 11.98 0.00 45.65 4.17
422 423 2.749621 GGGCTAGGATTTCACAGTTGTG 59.250 50.000 5.91 5.91 46.91 3.33
423 424 2.375174 TGGGCTAGGATTTCACAGTTGT 59.625 45.455 0.00 0.00 0.00 3.32
424 425 2.749621 GTGGGCTAGGATTTCACAGTTG 59.250 50.000 0.00 0.00 0.00 3.16
425 426 2.615493 CGTGGGCTAGGATTTCACAGTT 60.615 50.000 0.00 0.00 0.00 3.16
426 427 1.066143 CGTGGGCTAGGATTTCACAGT 60.066 52.381 0.00 0.00 0.00 3.55
427 428 1.656652 CGTGGGCTAGGATTTCACAG 58.343 55.000 0.00 0.00 0.00 3.66
428 429 0.251916 CCGTGGGCTAGGATTTCACA 59.748 55.000 0.00 0.00 0.00 3.58
429 430 0.252197 ACCGTGGGCTAGGATTTCAC 59.748 55.000 0.00 0.00 0.00 3.18
430 431 0.539986 GACCGTGGGCTAGGATTTCA 59.460 55.000 0.00 0.00 0.00 2.69
431 432 0.529992 CGACCGTGGGCTAGGATTTC 60.530 60.000 0.00 0.00 0.00 2.17
432 433 0.974010 TCGACCGTGGGCTAGGATTT 60.974 55.000 0.00 0.00 0.00 2.17
433 434 0.759436 ATCGACCGTGGGCTAGGATT 60.759 55.000 0.00 0.00 0.00 3.01
434 435 1.152525 ATCGACCGTGGGCTAGGAT 60.153 57.895 0.00 0.00 0.00 3.24
435 436 2.125326 CATCGACCGTGGGCTAGGA 61.125 63.158 0.00 0.00 0.00 2.94
436 437 2.417516 CATCGACCGTGGGCTAGG 59.582 66.667 0.00 0.00 0.00 3.02
437 438 2.279517 GCATCGACCGTGGGCTAG 60.280 66.667 0.00 0.00 0.00 3.42
438 439 3.845259 GGCATCGACCGTGGGCTA 61.845 66.667 0.00 0.00 0.00 3.93
448 449 1.893919 TTCCATGTGGTCGGCATCGA 61.894 55.000 0.00 0.00 43.86 3.59
449 450 1.431488 CTTCCATGTGGTCGGCATCG 61.431 60.000 0.00 0.00 36.34 3.84
450 451 0.107703 TCTTCCATGTGGTCGGCATC 60.108 55.000 0.00 0.00 36.34 3.91
451 452 0.107508 CTCTTCCATGTGGTCGGCAT 60.108 55.000 0.00 0.00 36.34 4.40
452 453 1.191489 TCTCTTCCATGTGGTCGGCA 61.191 55.000 0.00 0.00 36.34 5.69
453 454 0.036388 TTCTCTTCCATGTGGTCGGC 60.036 55.000 0.00 0.00 36.34 5.54
454 455 1.676014 GGTTCTCTTCCATGTGGTCGG 60.676 57.143 0.00 0.00 36.34 4.79
455 456 1.676014 GGGTTCTCTTCCATGTGGTCG 60.676 57.143 0.00 0.00 36.34 4.79
456 457 1.340114 GGGGTTCTCTTCCATGTGGTC 60.340 57.143 0.00 0.00 36.34 4.02
457 458 0.698818 GGGGTTCTCTTCCATGTGGT 59.301 55.000 0.00 0.00 36.34 4.16
458 459 0.392998 CGGGGTTCTCTTCCATGTGG 60.393 60.000 0.00 0.00 0.00 4.17
459 460 0.392998 CCGGGGTTCTCTTCCATGTG 60.393 60.000 0.00 0.00 0.00 3.21
460 461 1.991230 CCGGGGTTCTCTTCCATGT 59.009 57.895 0.00 0.00 0.00 3.21
461 462 1.452108 GCCGGGGTTCTCTTCCATG 60.452 63.158 2.18 0.00 0.00 3.66
462 463 2.998949 GCCGGGGTTCTCTTCCAT 59.001 61.111 2.18 0.00 0.00 3.41
463 464 3.702048 CGCCGGGGTTCTCTTCCA 61.702 66.667 11.01 0.00 0.00 3.53
465 466 4.083862 AGCGCCGGGGTTCTCTTC 62.084 66.667 20.83 0.86 0.00 2.87
466 467 4.394712 CAGCGCCGGGGTTCTCTT 62.395 66.667 20.83 0.00 0.00 2.85
481 482 4.368808 CGGCGTTGTTGCGGACAG 62.369 66.667 0.00 0.00 39.94 3.51
482 483 4.893601 TCGGCGTTGTTGCGGACA 62.894 61.111 6.85 0.00 39.00 4.02
483 484 4.072088 CTCGGCGTTGTTGCGGAC 62.072 66.667 6.85 0.00 39.00 4.79
486 487 3.777925 CTCCTCGGCGTTGTTGCG 61.778 66.667 6.85 0.00 35.06 4.85
487 488 3.423154 CCTCCTCGGCGTTGTTGC 61.423 66.667 6.85 0.00 0.00 4.17
488 489 1.738099 CTCCTCCTCGGCGTTGTTG 60.738 63.158 6.85 0.00 0.00 3.33
489 490 2.657237 CTCCTCCTCGGCGTTGTT 59.343 61.111 6.85 0.00 0.00 2.83
490 491 3.382832 CCTCCTCCTCGGCGTTGT 61.383 66.667 6.85 0.00 0.00 3.32
491 492 4.148825 CCCTCCTCCTCGGCGTTG 62.149 72.222 6.85 0.75 0.00 4.10
496 497 3.474570 CTTGCCCCTCCTCCTCGG 61.475 72.222 0.00 0.00 0.00 4.63
497 498 3.474570 CCTTGCCCCTCCTCCTCG 61.475 72.222 0.00 0.00 0.00 4.63
498 499 3.093172 CCCTTGCCCCTCCTCCTC 61.093 72.222 0.00 0.00 0.00 3.71
499 500 4.767892 CCCCTTGCCCCTCCTCCT 62.768 72.222 0.00 0.00 0.00 3.69
501 502 4.760220 TCCCCCTTGCCCCTCCTC 62.760 72.222 0.00 0.00 0.00 3.71
502 503 4.767892 CTCCCCCTTGCCCCTCCT 62.768 72.222 0.00 0.00 0.00 3.69
508 509 3.732849 CAGTCCCTCCCCCTTGCC 61.733 72.222 0.00 0.00 0.00 4.52
509 510 2.539081 AACAGTCCCTCCCCCTTGC 61.539 63.158 0.00 0.00 0.00 4.01
510 511 1.380302 CAACAGTCCCTCCCCCTTG 59.620 63.158 0.00 0.00 0.00 3.61
511 512 1.852626 CCAACAGTCCCTCCCCCTT 60.853 63.158 0.00 0.00 0.00 3.95
512 513 2.204151 CCAACAGTCCCTCCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
513 514 4.048470 GCCAACAGTCCCTCCCCC 62.048 72.222 0.00 0.00 0.00 5.40
514 515 1.615424 TAGCCAACAGTCCCTCCCC 60.615 63.158 0.00 0.00 0.00 4.81
515 516 1.627297 CCTAGCCAACAGTCCCTCCC 61.627 65.000 0.00 0.00 0.00 4.30
516 517 0.910088 ACCTAGCCAACAGTCCCTCC 60.910 60.000 0.00 0.00 0.00 4.30
517 518 0.984995 AACCTAGCCAACAGTCCCTC 59.015 55.000 0.00 0.00 0.00 4.30
518 519 1.907255 GTAACCTAGCCAACAGTCCCT 59.093 52.381 0.00 0.00 0.00 4.20
519 520 1.907255 AGTAACCTAGCCAACAGTCCC 59.093 52.381 0.00 0.00 0.00 4.46
520 521 2.302157 ACAGTAACCTAGCCAACAGTCC 59.698 50.000 0.00 0.00 0.00 3.85
521 522 3.679824 ACAGTAACCTAGCCAACAGTC 57.320 47.619 0.00 0.00 0.00 3.51
522 523 3.554337 CGAACAGTAACCTAGCCAACAGT 60.554 47.826 0.00 0.00 0.00 3.55
523 524 2.993899 CGAACAGTAACCTAGCCAACAG 59.006 50.000 0.00 0.00 0.00 3.16
524 525 2.366266 ACGAACAGTAACCTAGCCAACA 59.634 45.455 0.00 0.00 0.00 3.33
525 526 2.991866 GACGAACAGTAACCTAGCCAAC 59.008 50.000 0.00 0.00 0.00 3.77
526 527 2.895404 AGACGAACAGTAACCTAGCCAA 59.105 45.455 0.00 0.00 0.00 4.52
527 528 2.490903 GAGACGAACAGTAACCTAGCCA 59.509 50.000 0.00 0.00 0.00 4.75
528 529 2.490903 TGAGACGAACAGTAACCTAGCC 59.509 50.000 0.00 0.00 0.00 3.93
529 530 3.844577 TGAGACGAACAGTAACCTAGC 57.155 47.619 0.00 0.00 0.00 3.42
530 531 5.373981 ACTTGAGACGAACAGTAACCTAG 57.626 43.478 0.00 0.00 0.00 3.02
531 532 6.569226 GCTTACTTGAGACGAACAGTAACCTA 60.569 42.308 0.00 0.00 0.00 3.08
532 533 5.770417 CTTACTTGAGACGAACAGTAACCT 58.230 41.667 0.00 0.00 0.00 3.50
533 534 4.385146 GCTTACTTGAGACGAACAGTAACC 59.615 45.833 0.00 0.00 0.00 2.85
534 535 4.980434 TGCTTACTTGAGACGAACAGTAAC 59.020 41.667 0.00 0.00 0.00 2.50
535 536 5.190992 TGCTTACTTGAGACGAACAGTAA 57.809 39.130 0.00 0.00 0.00 2.24
536 537 4.841443 TGCTTACTTGAGACGAACAGTA 57.159 40.909 0.00 0.00 0.00 2.74
537 538 3.728076 TGCTTACTTGAGACGAACAGT 57.272 42.857 0.00 0.00 0.00 3.55
538 539 5.597813 ATTTGCTTACTTGAGACGAACAG 57.402 39.130 0.00 0.00 0.00 3.16
539 540 6.371809 AAATTTGCTTACTTGAGACGAACA 57.628 33.333 0.00 0.00 0.00 3.18
540 541 8.840867 CATAAAATTTGCTTACTTGAGACGAAC 58.159 33.333 0.00 0.00 0.00 3.95
541 542 8.564574 ACATAAAATTTGCTTACTTGAGACGAA 58.435 29.630 0.00 0.00 0.00 3.85
601 602 6.576442 GCCAAGGAGGTAGATCTCACTTTTTA 60.576 42.308 0.00 0.00 40.61 1.52
610 612 1.419387 GCATGCCAAGGAGGTAGATCT 59.581 52.381 6.36 0.00 40.61 2.75
627 629 9.114952 GCTTAACTAGGAGAAAAGATTTAGCAT 57.885 33.333 0.00 0.00 0.00 3.79
634 636 7.842236 AGAGGTAGCTTAACTAGGAGAAAAGAT 59.158 37.037 0.00 0.00 0.00 2.40
660 662 3.066621 AGAAGCAAATGCACGAGTTTTCA 59.933 39.130 8.28 0.00 45.16 2.69
661 663 3.632189 AGAAGCAAATGCACGAGTTTTC 58.368 40.909 8.28 1.11 45.16 2.29
667 669 5.871465 TTATGTAAGAAGCAAATGCACGA 57.129 34.783 8.28 0.00 45.16 4.35
831 1513 8.447833 ACACAAACGTATGGTTATATGTCTTTG 58.552 33.333 0.00 0.00 37.89 2.77
930 1613 3.490348 AGCGATGGCAGGCTTTTTATAT 58.510 40.909 9.76 0.00 43.41 0.86
943 1626 1.521681 GTACTGGTGGAGCGATGGC 60.522 63.158 0.00 0.00 40.37 4.40
1004 1695 2.630098 AGAGCTACTGCAAAGTGAGTCA 59.370 45.455 0.00 0.00 42.74 3.41
1124 1940 7.493645 ACCATTACAAACTAGCGTAAGTATTCC 59.506 37.037 0.00 0.00 41.68 3.01
1299 2115 7.862372 CGGAGAAATGAGAAAGAAAAATGAACA 59.138 33.333 0.00 0.00 0.00 3.18
1305 2121 4.022329 GGCCGGAGAAATGAGAAAGAAAAA 60.022 41.667 5.05 0.00 0.00 1.94
1362 2187 3.519579 CATGCACAGTGGAAACAAACAA 58.480 40.909 0.00 0.00 46.06 2.83
1794 2627 7.435068 TTTGTACTTAGAAGATTGCACCTTC 57.565 36.000 16.33 16.33 40.10 3.46
2146 3085 1.568612 AACATCAGCCTTGTCGCACG 61.569 55.000 0.00 0.00 0.00 5.34
2164 3103 5.994668 TCATGCATTATTGGTAGCGATGTAA 59.005 36.000 0.00 0.00 0.00 2.41
2225 3165 1.825474 ACAGTAGTGCCTAGACGCAAT 59.175 47.619 0.00 0.00 41.30 3.56
2432 3381 8.909708 TGCCATCTAAGAAAATTTCAAATACG 57.090 30.769 8.55 0.00 0.00 3.06
2770 3721 9.897040 AAATAATGGGATGTAATTAGGTCCATT 57.103 29.630 18.27 18.27 43.36 3.16
2784 3735 6.838612 TGGGTTCCTCTTTAAATAATGGGATG 59.161 38.462 0.00 0.00 0.00 3.51
2860 3811 6.920758 TGTTCATGCATAAACAAAGTTGTACC 59.079 34.615 13.17 0.00 41.31 3.34
2920 3871 3.542648 GGGATAACCTCCTTTTCGGAAG 58.457 50.000 0.00 0.00 44.28 3.46
2921 3872 2.240414 GGGGATAACCTCCTTTTCGGAA 59.760 50.000 0.00 0.00 44.28 4.30
2922 3873 1.841919 GGGGATAACCTCCTTTTCGGA 59.158 52.381 0.00 0.00 44.28 4.55
2923 3874 2.343484 GGGGATAACCTCCTTTTCGG 57.657 55.000 0.00 0.00 44.28 4.30
2956 3907 0.178998 ATGGCCTCATGCATCACTCC 60.179 55.000 3.32 0.00 43.89 3.85
3133 4084 2.076863 GCACAAGCTATCTTCAACCGT 58.923 47.619 0.00 0.00 37.91 4.83
3148 4099 0.981183 ATTGGGAGACGGTAGCACAA 59.019 50.000 0.68 0.68 0.00 3.33
3149 4100 1.754803 CTATTGGGAGACGGTAGCACA 59.245 52.381 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.