Multiple sequence alignment - TraesCS2A01G009800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G009800 chr2A 100.000 3898 0 0 1 3898 3866016 3862119 0.000000e+00 7199.0
1 TraesCS2A01G009800 chr2A 87.946 813 61 20 308 1112 11026405 11025622 0.000000e+00 924.0
2 TraesCS2A01G009800 chr2A 95.246 568 26 1 3331 3897 16907464 16906897 0.000000e+00 898.0
3 TraesCS2A01G009800 chr2A 91.930 570 40 5 3331 3895 7380339 7379771 0.000000e+00 793.0
4 TraesCS2A01G009800 chr2D 92.010 1940 117 12 1137 3072 10750782 10748877 0.000000e+00 2689.0
5 TraesCS2A01G009800 chr2D 84.245 1847 251 33 1135 2966 10800434 10798613 0.000000e+00 1762.0
6 TraesCS2A01G009800 chr2D 89.702 806 54 14 308 1104 10751571 10750786 0.000000e+00 1002.0
7 TraesCS2A01G009800 chr2D 95.782 569 22 2 3331 3897 29663375 29662807 0.000000e+00 917.0
8 TraesCS2A01G009800 chr2D 82.562 281 33 10 4 277 608864383 608864112 2.340000e-57 233.0
9 TraesCS2A01G009800 chr2D 86.755 151 19 1 3110 3259 499935834 499935684 2.410000e-37 167.0
10 TraesCS2A01G009800 chr2B 85.251 1790 226 26 1137 2916 15917462 15915701 0.000000e+00 1808.0
11 TraesCS2A01G009800 chr2B 85.196 1790 227 26 1137 2916 15818491 15816730 0.000000e+00 1803.0
12 TraesCS2A01G009800 chr2B 83.460 1844 265 31 1135 2965 15962367 15960551 0.000000e+00 1679.0
13 TraesCS2A01G009800 chr2B 83.378 1847 262 36 1135 2965 15790216 15788399 0.000000e+00 1668.0
14 TraesCS2A01G009800 chr2B 83.306 1845 266 33 1135 2965 15727149 15725333 0.000000e+00 1663.0
15 TraesCS2A01G009800 chr2B 93.433 1066 67 1 1132 2197 14952519 14951457 0.000000e+00 1578.0
16 TraesCS2A01G009800 chr2B 89.356 808 59 18 308 1106 15091019 15090230 0.000000e+00 990.0
17 TraesCS2A01G009800 chr2B 86.229 472 39 4 641 1112 14952947 14952502 4.530000e-134 488.0
18 TraesCS2A01G009800 chr2B 86.705 173 18 4 3088 3259 210016547 210016715 1.850000e-43 187.0
19 TraesCS2A01G009800 chr2B 86.765 68 7 1 345 412 15410071 15410006 1.500000e-09 75.0
20 TraesCS2A01G009800 chr2B 97.436 39 1 0 378 416 15696350 15696312 2.510000e-07 67.6
21 TraesCS2A01G009800 chr2B 97.436 39 1 0 378 416 15758471 15758433 2.510000e-07 67.6
22 TraesCS2A01G009800 chr2B 97.436 39 1 0 378 416 15819657 15819619 2.510000e-07 67.6
23 TraesCS2A01G009800 chr2B 97.436 39 1 0 378 416 15918628 15918590 2.510000e-07 67.6
24 TraesCS2A01G009800 chrUn 83.595 1847 263 31 1132 2965 339546793 339548612 0.000000e+00 1696.0
25 TraesCS2A01G009800 chrUn 83.460 1844 265 31 1135 2965 339561247 339559431 0.000000e+00 1679.0
26 TraesCS2A01G009800 chrUn 93.433 1066 67 1 1132 2197 303367520 303368582 0.000000e+00 1578.0
27 TraesCS2A01G009800 chrUn 93.433 1066 67 1 1132 2197 303429895 303430957 0.000000e+00 1578.0
28 TraesCS2A01G009800 chrUn 86.229 472 39 4 641 1112 303367092 303367537 4.530000e-134 488.0
29 TraesCS2A01G009800 chrUn 86.229 472 39 4 641 1112 303429467 303429912 4.530000e-134 488.0
30 TraesCS2A01G009800 chr1D 95.255 569 22 4 3331 3897 408961224 408961789 0.000000e+00 896.0
31 TraesCS2A01G009800 chr7D 94.249 539 30 1 3331 3868 102957903 102957365 0.000000e+00 822.0
32 TraesCS2A01G009800 chr7D 92.778 540 37 2 3331 3868 194500784 194501323 0.000000e+00 780.0
33 TraesCS2A01G009800 chr7D 86.624 157 20 1 3104 3259 446506164 446506320 5.180000e-39 172.0
34 TraesCS2A01G009800 chr1B 92.119 571 39 5 3331 3897 671460792 671461360 0.000000e+00 800.0
35 TraesCS2A01G009800 chr6A 91.478 575 40 6 3331 3897 121713118 121713691 0.000000e+00 782.0
36 TraesCS2A01G009800 chr4B 90.909 572 45 6 3331 3897 637369062 637369631 0.000000e+00 761.0
37 TraesCS2A01G009800 chr4B 83.969 262 30 8 22 276 165999094 165998838 1.400000e-59 241.0
38 TraesCS2A01G009800 chr4B 80.919 283 38 13 1 273 89406586 89406862 3.950000e-50 209.0
39 TraesCS2A01G009800 chr4D 82.686 283 42 5 1 278 493928042 493928322 1.080000e-60 244.0
40 TraesCS2A01G009800 chr4D 81.362 279 36 12 4 273 61128121 61127850 3.050000e-51 213.0
41 TraesCS2A01G009800 chr3B 83.154 279 35 10 3 272 141802951 141802676 1.080000e-60 244.0
42 TraesCS2A01G009800 chr3B 81.720 279 40 8 1 272 828296190 828296464 5.070000e-54 222.0
43 TraesCS2A01G009800 chr7B 81.851 281 42 7 2 276 491146740 491147017 1.090000e-55 228.0
44 TraesCS2A01G009800 chr5B 80.783 281 43 8 4 277 288391859 288392135 3.950000e-50 209.0
45 TraesCS2A01G009800 chr5B 85.542 83 8 3 3090 3172 75540277 75540355 2.500000e-12 84.2
46 TraesCS2A01G009800 chr7A 86.047 172 21 2 3089 3259 497282269 497282438 8.600000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G009800 chr2A 3862119 3866016 3897 True 7199.0 7199 100.0000 1 3898 1 chr2A.!!$R1 3897
1 TraesCS2A01G009800 chr2A 11025622 11026405 783 True 924.0 924 87.9460 308 1112 1 chr2A.!!$R3 804
2 TraesCS2A01G009800 chr2A 16906897 16907464 567 True 898.0 898 95.2460 3331 3897 1 chr2A.!!$R4 566
3 TraesCS2A01G009800 chr2A 7379771 7380339 568 True 793.0 793 91.9300 3331 3895 1 chr2A.!!$R2 564
4 TraesCS2A01G009800 chr2D 10748877 10751571 2694 True 1845.5 2689 90.8560 308 3072 2 chr2D.!!$R5 2764
5 TraesCS2A01G009800 chr2D 10798613 10800434 1821 True 1762.0 1762 84.2450 1135 2966 1 chr2D.!!$R1 1831
6 TraesCS2A01G009800 chr2D 29662807 29663375 568 True 917.0 917 95.7820 3331 3897 1 chr2D.!!$R2 566
7 TraesCS2A01G009800 chr2B 15960551 15962367 1816 True 1679.0 1679 83.4600 1135 2965 1 chr2B.!!$R7 1830
8 TraesCS2A01G009800 chr2B 15788399 15790216 1817 True 1668.0 1668 83.3780 1135 2965 1 chr2B.!!$R6 1830
9 TraesCS2A01G009800 chr2B 15725333 15727149 1816 True 1663.0 1663 83.3060 1135 2965 1 chr2B.!!$R4 1830
10 TraesCS2A01G009800 chr2B 14951457 14952947 1490 True 1033.0 1578 89.8310 641 2197 2 chr2B.!!$R8 1556
11 TraesCS2A01G009800 chr2B 15090230 15091019 789 True 990.0 990 89.3560 308 1106 1 chr2B.!!$R1 798
12 TraesCS2A01G009800 chr2B 15915701 15918628 2927 True 937.8 1808 91.3435 378 2916 2 chr2B.!!$R10 2538
13 TraesCS2A01G009800 chr2B 15816730 15819657 2927 True 935.3 1803 91.3160 378 2916 2 chr2B.!!$R9 2538
14 TraesCS2A01G009800 chrUn 339546793 339548612 1819 False 1696.0 1696 83.5950 1132 2965 1 chrUn.!!$F1 1833
15 TraesCS2A01G009800 chrUn 339559431 339561247 1816 True 1679.0 1679 83.4600 1135 2965 1 chrUn.!!$R1 1830
16 TraesCS2A01G009800 chrUn 303367092 303368582 1490 False 1033.0 1578 89.8310 641 2197 2 chrUn.!!$F2 1556
17 TraesCS2A01G009800 chrUn 303429467 303430957 1490 False 1033.0 1578 89.8310 641 2197 2 chrUn.!!$F3 1556
18 TraesCS2A01G009800 chr1D 408961224 408961789 565 False 896.0 896 95.2550 3331 3897 1 chr1D.!!$F1 566
19 TraesCS2A01G009800 chr7D 102957365 102957903 538 True 822.0 822 94.2490 3331 3868 1 chr7D.!!$R1 537
20 TraesCS2A01G009800 chr7D 194500784 194501323 539 False 780.0 780 92.7780 3331 3868 1 chr7D.!!$F1 537
21 TraesCS2A01G009800 chr1B 671460792 671461360 568 False 800.0 800 92.1190 3331 3897 1 chr1B.!!$F1 566
22 TraesCS2A01G009800 chr6A 121713118 121713691 573 False 782.0 782 91.4780 3331 3897 1 chr6A.!!$F1 566
23 TraesCS2A01G009800 chr4B 637369062 637369631 569 False 761.0 761 90.9090 3331 3897 1 chr4B.!!$F2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.042131 TCGGAGGGTTGGTATCACCT 59.958 55.0 0.0 0.0 39.58 4.00 F
1850 2454 0.104855 TATGAGGACGAGGCACATGC 59.895 55.0 0.0 0.0 41.14 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2603 0.181114 CTTTCATGGATCCGCTCCCA 59.819 55.0 7.39 0.0 44.23 4.37 R
2962 3574 0.320683 CCCTCACGACATCTTGCACA 60.321 55.0 0.00 0.0 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.568676 TCCAAATTTGAAATATACACCGAGAA 57.431 30.769 19.86 0.00 0.00 2.87
26 27 8.455682 TCCAAATTTGAAATATACACCGAGAAC 58.544 33.333 19.86 0.00 0.00 3.01
27 28 7.700656 CCAAATTTGAAATATACACCGAGAACC 59.299 37.037 19.86 0.00 0.00 3.62
28 29 7.931578 AATTTGAAATATACACCGAGAACCA 57.068 32.000 0.00 0.00 0.00 3.67
29 30 7.931578 ATTTGAAATATACACCGAGAACCAA 57.068 32.000 0.00 0.00 0.00 3.67
30 31 7.747155 TTTGAAATATACACCGAGAACCAAA 57.253 32.000 0.00 0.00 0.00 3.28
31 32 7.747155 TTGAAATATACACCGAGAACCAAAA 57.253 32.000 0.00 0.00 0.00 2.44
32 33 7.747155 TGAAATATACACCGAGAACCAAAAA 57.253 32.000 0.00 0.00 0.00 1.94
33 34 7.812648 TGAAATATACACCGAGAACCAAAAAG 58.187 34.615 0.00 0.00 0.00 2.27
34 35 6.753107 AATATACACCGAGAACCAAAAAGG 57.247 37.500 0.00 0.00 45.67 3.11
35 36 2.721425 ACACCGAGAACCAAAAAGGA 57.279 45.000 0.00 0.00 41.22 3.36
36 37 2.294979 ACACCGAGAACCAAAAAGGAC 58.705 47.619 0.00 0.00 41.22 3.85
37 38 2.294074 CACCGAGAACCAAAAAGGACA 58.706 47.619 0.00 0.00 41.22 4.02
38 39 2.685897 CACCGAGAACCAAAAAGGACAA 59.314 45.455 0.00 0.00 41.22 3.18
39 40 3.129638 CACCGAGAACCAAAAAGGACAAA 59.870 43.478 0.00 0.00 41.22 2.83
40 41 3.958147 ACCGAGAACCAAAAAGGACAAAT 59.042 39.130 0.00 0.00 41.22 2.32
41 42 4.037565 ACCGAGAACCAAAAAGGACAAATC 59.962 41.667 0.00 0.00 41.22 2.17
42 43 4.546570 CGAGAACCAAAAAGGACAAATCC 58.453 43.478 0.00 0.00 46.69 3.01
56 57 6.949352 GGACAAATCCATGATGAATAGTGT 57.051 37.500 0.00 0.00 45.47 3.55
57 58 6.963796 GGACAAATCCATGATGAATAGTGTC 58.036 40.000 0.00 0.00 45.47 3.67
58 59 6.543465 GGACAAATCCATGATGAATAGTGTCA 59.457 38.462 9.49 0.00 45.47 3.58
59 60 7.067372 GGACAAATCCATGATGAATAGTGTCAA 59.933 37.037 9.49 0.00 45.47 3.18
60 61 8.352137 ACAAATCCATGATGAATAGTGTCAAA 57.648 30.769 0.00 0.00 0.00 2.69
61 62 8.805175 ACAAATCCATGATGAATAGTGTCAAAA 58.195 29.630 0.00 0.00 0.00 2.44
62 63 9.297586 CAAATCCATGATGAATAGTGTCAAAAG 57.702 33.333 0.00 0.00 0.00 2.27
63 64 8.812513 AATCCATGATGAATAGTGTCAAAAGA 57.187 30.769 0.00 0.00 0.00 2.52
64 65 8.812513 ATCCATGATGAATAGTGTCAAAAGAA 57.187 30.769 0.00 0.00 0.00 2.52
65 66 8.272545 TCCATGATGAATAGTGTCAAAAGAAG 57.727 34.615 0.00 0.00 0.00 2.85
66 67 8.102676 TCCATGATGAATAGTGTCAAAAGAAGA 58.897 33.333 0.00 0.00 0.00 2.87
67 68 8.180267 CCATGATGAATAGTGTCAAAAGAAGAC 58.820 37.037 0.00 0.00 36.55 3.01
68 69 8.724229 CATGATGAATAGTGTCAAAAGAAGACA 58.276 33.333 0.00 0.00 43.23 3.41
69 70 8.675705 TGATGAATAGTGTCAAAAGAAGACAA 57.324 30.769 0.00 0.00 46.50 3.18
70 71 9.119418 TGATGAATAGTGTCAAAAGAAGACAAA 57.881 29.630 0.00 0.00 46.50 2.83
71 72 9.950680 GATGAATAGTGTCAAAAGAAGACAAAA 57.049 29.630 0.00 0.00 46.50 2.44
73 74 9.567848 TGAATAGTGTCAAAAGAAGACAAAAAC 57.432 29.630 0.00 0.00 46.50 2.43
74 75 9.567848 GAATAGTGTCAAAAGAAGACAAAAACA 57.432 29.630 0.00 0.00 46.50 2.83
75 76 9.921637 AATAGTGTCAAAAGAAGACAAAAACAA 57.078 25.926 0.00 0.00 46.50 2.83
76 77 9.921637 ATAGTGTCAAAAGAAGACAAAAACAAA 57.078 25.926 0.00 0.00 46.50 2.83
77 78 8.655651 AGTGTCAAAAGAAGACAAAAACAAAA 57.344 26.923 0.00 0.00 46.50 2.44
78 79 9.103861 AGTGTCAAAAGAAGACAAAAACAAAAA 57.896 25.926 0.00 0.00 46.50 1.94
79 80 9.877137 GTGTCAAAAGAAGACAAAAACAAAAAT 57.123 25.926 0.00 0.00 46.50 1.82
80 81 9.875675 TGTCAAAAGAAGACAAAAACAAAAATG 57.124 25.926 0.00 0.00 42.57 2.32
83 84 9.875675 CAAAAGAAGACAAAAACAAAAATGACA 57.124 25.926 0.00 0.00 0.00 3.58
84 85 9.877137 AAAAGAAGACAAAAACAAAAATGACAC 57.123 25.926 0.00 0.00 0.00 3.67
85 86 8.831715 AAGAAGACAAAAACAAAAATGACACT 57.168 26.923 0.00 0.00 0.00 3.55
86 87 9.921637 AAGAAGACAAAAACAAAAATGACACTA 57.078 25.926 0.00 0.00 0.00 2.74
90 91 9.868277 AGACAAAAACAAAAATGACACTATTCA 57.132 25.926 0.00 0.00 0.00 2.57
91 92 9.900264 GACAAAAACAAAAATGACACTATTCAC 57.100 29.630 0.00 0.00 0.00 3.18
92 93 9.429359 ACAAAAACAAAAATGACACTATTCACA 57.571 25.926 0.00 0.00 0.00 3.58
96 97 9.467258 AAACAAAAATGACACTATTCACATCTG 57.533 29.630 0.00 0.00 0.00 2.90
97 98 8.394971 ACAAAAATGACACTATTCACATCTGA 57.605 30.769 0.00 0.00 0.00 3.27
98 99 8.849168 ACAAAAATGACACTATTCACATCTGAA 58.151 29.630 0.00 0.00 40.77 3.02
99 100 9.850628 CAAAAATGACACTATTCACATCTGAAT 57.149 29.630 1.66 1.66 46.84 2.57
102 103 9.850628 AAATGACACTATTCACATCTGAATTTG 57.149 29.630 1.29 3.21 43.48 2.32
103 104 7.984422 TGACACTATTCACATCTGAATTTGT 57.016 32.000 1.29 6.05 43.48 2.83
104 105 8.032952 TGACACTATTCACATCTGAATTTGTC 57.967 34.615 20.04 20.04 43.48 3.18
105 106 7.984422 ACACTATTCACATCTGAATTTGTCA 57.016 32.000 1.29 0.00 43.48 3.58
106 107 8.571461 ACACTATTCACATCTGAATTTGTCAT 57.429 30.769 1.29 0.00 43.48 3.06
107 108 9.017509 ACACTATTCACATCTGAATTTGTCATT 57.982 29.630 1.29 0.00 43.48 2.57
108 109 9.850628 CACTATTCACATCTGAATTTGTCATTT 57.149 29.630 1.29 0.00 43.48 2.32
112 113 8.945481 TTCACATCTGAATTTGTCATTTTTGT 57.055 26.923 0.00 0.00 35.07 2.83
113 114 8.945481 TCACATCTGAATTTGTCATTTTTGTT 57.055 26.923 0.00 0.00 35.07 2.83
114 115 9.381033 TCACATCTGAATTTGTCATTTTTGTTT 57.619 25.926 0.00 0.00 35.07 2.83
115 116 9.640974 CACATCTGAATTTGTCATTTTTGTTTC 57.359 29.630 0.00 0.00 35.07 2.78
116 117 9.603921 ACATCTGAATTTGTCATTTTTGTTTCT 57.396 25.926 0.00 0.00 35.07 2.52
118 119 8.647143 TCTGAATTTGTCATTTTTGTTTCTCC 57.353 30.769 0.00 0.00 35.07 3.71
119 120 7.434897 TCTGAATTTGTCATTTTTGTTTCTCCG 59.565 33.333 0.00 0.00 35.07 4.63
120 121 7.038659 TGAATTTGTCATTTTTGTTTCTCCGT 58.961 30.769 0.00 0.00 0.00 4.69
121 122 6.826893 ATTTGTCATTTTTGTTTCTCCGTG 57.173 33.333 0.00 0.00 0.00 4.94
122 123 4.974368 TGTCATTTTTGTTTCTCCGTGT 57.026 36.364 0.00 0.00 0.00 4.49
123 124 4.667262 TGTCATTTTTGTTTCTCCGTGTG 58.333 39.130 0.00 0.00 0.00 3.82
124 125 4.156922 TGTCATTTTTGTTTCTCCGTGTGT 59.843 37.500 0.00 0.00 0.00 3.72
125 126 5.354513 TGTCATTTTTGTTTCTCCGTGTGTA 59.645 36.000 0.00 0.00 0.00 2.90
126 127 6.127980 TGTCATTTTTGTTTCTCCGTGTGTAA 60.128 34.615 0.00 0.00 0.00 2.41
127 128 6.915843 GTCATTTTTGTTTCTCCGTGTGTAAT 59.084 34.615 0.00 0.00 0.00 1.89
128 129 7.434013 GTCATTTTTGTTTCTCCGTGTGTAATT 59.566 33.333 0.00 0.00 0.00 1.40
129 130 7.646130 TCATTTTTGTTTCTCCGTGTGTAATTC 59.354 33.333 0.00 0.00 0.00 2.17
130 131 4.718858 TTGTTTCTCCGTGTGTAATTCG 57.281 40.909 0.00 0.00 0.00 3.34
131 132 3.719924 TGTTTCTCCGTGTGTAATTCGT 58.280 40.909 0.00 0.00 0.00 3.85
132 133 4.869215 TGTTTCTCCGTGTGTAATTCGTA 58.131 39.130 0.00 0.00 0.00 3.43
133 134 5.472148 TGTTTCTCCGTGTGTAATTCGTAT 58.528 37.500 0.00 0.00 0.00 3.06
134 135 5.927689 TGTTTCTCCGTGTGTAATTCGTATT 59.072 36.000 0.00 0.00 0.00 1.89
135 136 6.424509 TGTTTCTCCGTGTGTAATTCGTATTT 59.575 34.615 0.00 0.00 0.00 1.40
136 137 6.397831 TTCTCCGTGTGTAATTCGTATTTG 57.602 37.500 0.00 0.00 0.00 2.32
137 138 4.865925 TCTCCGTGTGTAATTCGTATTTGG 59.134 41.667 0.00 0.00 0.00 3.28
138 139 4.818642 TCCGTGTGTAATTCGTATTTGGA 58.181 39.130 0.00 0.00 0.00 3.53
139 140 5.421277 TCCGTGTGTAATTCGTATTTGGAT 58.579 37.500 0.00 0.00 0.00 3.41
140 141 5.521010 TCCGTGTGTAATTCGTATTTGGATC 59.479 40.000 0.00 0.00 0.00 3.36
141 142 5.522460 CCGTGTGTAATTCGTATTTGGATCT 59.478 40.000 0.00 0.00 0.00 2.75
142 143 6.410845 CGTGTGTAATTCGTATTTGGATCTG 58.589 40.000 0.00 0.00 0.00 2.90
143 144 6.254804 CGTGTGTAATTCGTATTTGGATCTGA 59.745 38.462 0.00 0.00 0.00 3.27
144 145 7.201487 CGTGTGTAATTCGTATTTGGATCTGAA 60.201 37.037 0.00 0.00 0.00 3.02
145 146 8.612619 GTGTGTAATTCGTATTTGGATCTGAAT 58.387 33.333 0.00 0.00 0.00 2.57
146 147 9.173021 TGTGTAATTCGTATTTGGATCTGAATT 57.827 29.630 0.00 3.82 38.92 2.17
153 154 8.220755 TCGTATTTGGATCTGAATTTTTAGGG 57.779 34.615 0.00 0.00 0.00 3.53
154 155 7.284489 TCGTATTTGGATCTGAATTTTTAGGGG 59.716 37.037 0.00 0.00 0.00 4.79
155 156 7.068226 CGTATTTGGATCTGAATTTTTAGGGGT 59.932 37.037 0.00 0.00 0.00 4.95
156 157 7.813087 ATTTGGATCTGAATTTTTAGGGGTT 57.187 32.000 0.00 0.00 0.00 4.11
157 158 6.603940 TTGGATCTGAATTTTTAGGGGTTG 57.396 37.500 0.00 0.00 0.00 3.77
158 159 5.650283 TGGATCTGAATTTTTAGGGGTTGT 58.350 37.500 0.00 0.00 0.00 3.32
159 160 5.714806 TGGATCTGAATTTTTAGGGGTTGTC 59.285 40.000 0.00 0.00 0.00 3.18
160 161 5.163652 GGATCTGAATTTTTAGGGGTTGTCG 60.164 44.000 0.00 0.00 0.00 4.35
161 162 4.975631 TCTGAATTTTTAGGGGTTGTCGA 58.024 39.130 0.00 0.00 0.00 4.20
162 163 4.758165 TCTGAATTTTTAGGGGTTGTCGAC 59.242 41.667 9.11 9.11 0.00 4.20
163 164 4.462133 TGAATTTTTAGGGGTTGTCGACA 58.538 39.130 15.76 15.76 0.00 4.35
164 165 5.074115 TGAATTTTTAGGGGTTGTCGACAT 58.926 37.500 20.80 6.45 0.00 3.06
165 166 6.239396 TGAATTTTTAGGGGTTGTCGACATA 58.761 36.000 20.80 5.32 0.00 2.29
166 167 6.715718 TGAATTTTTAGGGGTTGTCGACATAA 59.284 34.615 20.80 11.61 0.00 1.90
167 168 6.753107 ATTTTTAGGGGTTGTCGACATAAG 57.247 37.500 20.80 0.00 0.00 1.73
168 169 4.895668 TTTAGGGGTTGTCGACATAAGT 57.104 40.909 20.80 6.15 0.00 2.24
169 170 2.762535 AGGGGTTGTCGACATAAGTG 57.237 50.000 20.80 0.00 0.00 3.16
170 171 1.975680 AGGGGTTGTCGACATAAGTGT 59.024 47.619 20.80 0.00 42.49 3.55
171 172 3.167485 AGGGGTTGTCGACATAAGTGTA 58.833 45.455 20.80 0.00 39.09 2.90
172 173 3.773119 AGGGGTTGTCGACATAAGTGTAT 59.227 43.478 20.80 0.00 39.09 2.29
173 174 4.224370 AGGGGTTGTCGACATAAGTGTATT 59.776 41.667 20.80 0.00 39.09 1.89
174 175 4.939439 GGGGTTGTCGACATAAGTGTATTT 59.061 41.667 20.80 0.00 39.09 1.40
175 176 5.163794 GGGGTTGTCGACATAAGTGTATTTG 60.164 44.000 20.80 0.00 39.09 2.32
176 177 5.163794 GGGTTGTCGACATAAGTGTATTTGG 60.164 44.000 20.80 0.00 39.09 3.28
177 178 5.640357 GGTTGTCGACATAAGTGTATTTGGA 59.360 40.000 20.80 0.00 39.09 3.53
178 179 6.315393 GGTTGTCGACATAAGTGTATTTGGAT 59.685 38.462 20.80 0.00 39.09 3.41
179 180 7.399523 GTTGTCGACATAAGTGTATTTGGATC 58.600 38.462 20.80 0.00 39.09 3.36
180 181 6.635755 TGTCGACATAAGTGTATTTGGATCA 58.364 36.000 15.76 0.00 39.09 2.92
181 182 7.100409 TGTCGACATAAGTGTATTTGGATCAA 58.900 34.615 15.76 0.00 39.09 2.57
182 183 7.768582 TGTCGACATAAGTGTATTTGGATCAAT 59.231 33.333 15.76 0.00 39.09 2.57
183 184 8.612619 GTCGACATAAGTGTATTTGGATCAATT 58.387 33.333 11.55 0.00 39.09 2.32
184 185 9.173021 TCGACATAAGTGTATTTGGATCAATTT 57.827 29.630 0.00 0.00 39.09 1.82
185 186 9.787532 CGACATAAGTGTATTTGGATCAATTTT 57.212 29.630 0.00 0.00 39.09 1.82
243 244 6.753107 TTTTTAAGTTGGTAGCATAGGAGC 57.247 37.500 0.00 0.00 0.00 4.70
244 245 5.429681 TTTAAGTTGGTAGCATAGGAGCA 57.570 39.130 0.00 0.00 36.85 4.26
245 246 5.630415 TTAAGTTGGTAGCATAGGAGCAT 57.370 39.130 0.00 0.00 36.85 3.79
246 247 3.760580 AGTTGGTAGCATAGGAGCATC 57.239 47.619 0.00 0.00 36.85 3.91
247 248 2.036475 AGTTGGTAGCATAGGAGCATCG 59.964 50.000 0.00 0.00 36.85 3.84
248 249 0.969149 TGGTAGCATAGGAGCATCGG 59.031 55.000 0.00 0.00 36.85 4.18
249 250 1.257743 GGTAGCATAGGAGCATCGGA 58.742 55.000 0.00 0.00 36.85 4.55
250 251 1.203523 GGTAGCATAGGAGCATCGGAG 59.796 57.143 0.00 0.00 36.85 4.63
251 252 1.203523 GTAGCATAGGAGCATCGGAGG 59.796 57.143 0.00 0.00 36.85 4.30
252 253 1.190833 AGCATAGGAGCATCGGAGGG 61.191 60.000 0.00 0.00 36.85 4.30
253 254 1.476007 GCATAGGAGCATCGGAGGGT 61.476 60.000 0.00 0.00 34.37 4.34
254 255 1.051812 CATAGGAGCATCGGAGGGTT 58.948 55.000 0.00 0.00 34.37 4.11
255 256 1.051812 ATAGGAGCATCGGAGGGTTG 58.948 55.000 0.00 0.00 34.37 3.77
256 257 1.048724 TAGGAGCATCGGAGGGTTGG 61.049 60.000 0.00 0.00 34.37 3.77
257 258 2.670148 GGAGCATCGGAGGGTTGGT 61.670 63.158 0.00 0.00 34.37 3.67
258 259 1.335132 GGAGCATCGGAGGGTTGGTA 61.335 60.000 0.00 0.00 34.37 3.25
259 260 0.759346 GAGCATCGGAGGGTTGGTAT 59.241 55.000 0.00 0.00 0.00 2.73
260 261 0.759346 AGCATCGGAGGGTTGGTATC 59.241 55.000 0.00 0.00 0.00 2.24
261 262 0.468226 GCATCGGAGGGTTGGTATCA 59.532 55.000 0.00 0.00 0.00 2.15
262 263 1.810412 GCATCGGAGGGTTGGTATCAC 60.810 57.143 0.00 0.00 0.00 3.06
263 264 1.129058 ATCGGAGGGTTGGTATCACC 58.871 55.000 0.00 0.00 39.22 4.02
264 265 0.042131 TCGGAGGGTTGGTATCACCT 59.958 55.000 0.00 0.00 39.58 4.00
265 266 1.288633 TCGGAGGGTTGGTATCACCTA 59.711 52.381 0.00 0.00 39.58 3.08
266 267 2.112998 CGGAGGGTTGGTATCACCTAA 58.887 52.381 0.00 0.00 39.58 2.69
267 268 2.704065 CGGAGGGTTGGTATCACCTAAT 59.296 50.000 0.00 0.00 39.58 1.73
268 269 3.899360 CGGAGGGTTGGTATCACCTAATA 59.101 47.826 0.00 0.00 39.58 0.98
269 270 4.262335 CGGAGGGTTGGTATCACCTAATAC 60.262 50.000 0.00 0.00 39.58 1.89
270 271 4.906060 GGAGGGTTGGTATCACCTAATACT 59.094 45.833 0.00 0.00 39.58 2.12
271 272 5.368816 GGAGGGTTGGTATCACCTAATACTT 59.631 44.000 0.00 0.00 39.58 2.24
272 273 6.126565 GGAGGGTTGGTATCACCTAATACTTT 60.127 42.308 0.00 0.00 39.58 2.66
273 274 6.896883 AGGGTTGGTATCACCTAATACTTTC 58.103 40.000 0.00 0.00 39.58 2.62
274 275 6.060136 GGGTTGGTATCACCTAATACTTTCC 58.940 44.000 0.00 0.00 39.58 3.13
275 276 6.060136 GGTTGGTATCACCTAATACTTTCCC 58.940 44.000 0.00 0.00 39.58 3.97
276 277 6.353255 GGTTGGTATCACCTAATACTTTCCCA 60.353 42.308 0.00 0.00 39.58 4.37
277 278 7.287810 GTTGGTATCACCTAATACTTTCCCAT 58.712 38.462 0.00 0.00 39.58 4.00
278 279 7.074653 TGGTATCACCTAATACTTTCCCATC 57.925 40.000 0.00 0.00 39.58 3.51
279 280 6.849697 TGGTATCACCTAATACTTTCCCATCT 59.150 38.462 0.00 0.00 39.58 2.90
280 281 7.016268 TGGTATCACCTAATACTTTCCCATCTC 59.984 40.741 0.00 0.00 39.58 2.75
281 282 5.888982 TCACCTAATACTTTCCCATCTCC 57.111 43.478 0.00 0.00 0.00 3.71
282 283 4.344102 TCACCTAATACTTTCCCATCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
283 284 3.646637 ACCTAATACTTTCCCATCTCCGG 59.353 47.826 0.00 0.00 0.00 5.14
284 285 3.646637 CCTAATACTTTCCCATCTCCGGT 59.353 47.826 0.00 0.00 0.00 5.28
285 286 4.836736 CCTAATACTTTCCCATCTCCGGTA 59.163 45.833 0.00 0.00 0.00 4.02
286 287 4.684484 AATACTTTCCCATCTCCGGTAC 57.316 45.455 0.00 0.00 0.00 3.34
301 302 2.693267 GGTACGCTCCTGGAAGAATT 57.307 50.000 0.00 0.00 34.07 2.17
302 303 2.280628 GGTACGCTCCTGGAAGAATTG 58.719 52.381 0.00 0.00 34.07 2.32
303 304 2.093658 GGTACGCTCCTGGAAGAATTGA 60.094 50.000 0.00 0.00 34.07 2.57
304 305 2.393271 ACGCTCCTGGAAGAATTGAG 57.607 50.000 0.00 0.00 34.07 3.02
305 306 1.902508 ACGCTCCTGGAAGAATTGAGA 59.097 47.619 0.00 0.00 34.07 3.27
306 307 2.275318 CGCTCCTGGAAGAATTGAGAC 58.725 52.381 0.00 0.00 34.07 3.36
311 312 3.394274 TCCTGGAAGAATTGAGACACCAA 59.606 43.478 0.00 0.00 34.07 3.67
317 318 5.505173 AAGAATTGAGACACCAAACACTG 57.495 39.130 0.00 0.00 0.00 3.66
374 376 2.503356 GGAAGAGAGAATGGCTCCAGAA 59.497 50.000 0.00 0.00 45.10 3.02
485 495 8.539544 TGGAATCTCATTCATTCAGTACTGTTA 58.460 33.333 21.99 12.12 41.03 2.41
486 496 9.553064 GGAATCTCATTCATTCAGTACTGTTAT 57.447 33.333 21.99 13.76 41.03 1.89
650 772 8.997323 ACAAATTGACAGTGAAAGAAGAGATAG 58.003 33.333 0.00 0.00 0.00 2.08
980 1574 3.765511 TCCCCGGATGTCCTATAAATACG 59.234 47.826 0.73 0.00 0.00 3.06
982 1576 3.194968 CCCGGATGTCCTATAAATACGCT 59.805 47.826 0.73 0.00 0.00 5.07
983 1577 4.400251 CCCGGATGTCCTATAAATACGCTA 59.600 45.833 0.73 0.00 0.00 4.26
984 1578 5.338365 CCGGATGTCCTATAAATACGCTAC 58.662 45.833 0.00 0.00 0.00 3.58
987 1582 6.349115 CGGATGTCCTATAAATACGCTACAGT 60.349 42.308 0.00 0.00 0.00 3.55
998 1593 6.476243 AATACGCTACAGTTAACCAAGTTG 57.524 37.500 0.88 0.00 0.00 3.16
1024 1621 0.671781 CCAAGCAGGAGTGTCTTCGG 60.672 60.000 0.00 0.00 41.22 4.30
1065 1662 2.620627 CCTTTGTCACCCCCAACCTATC 60.621 54.545 0.00 0.00 0.00 2.08
1066 1663 2.053747 TTGTCACCCCCAACCTATCT 57.946 50.000 0.00 0.00 0.00 1.98
1067 1664 2.953093 TGTCACCCCCAACCTATCTA 57.047 50.000 0.00 0.00 0.00 1.98
1068 1665 2.474112 TGTCACCCCCAACCTATCTAC 58.526 52.381 0.00 0.00 0.00 2.59
1077 1674 4.532521 CCCCAACCTATCTACCTATTCCAG 59.467 50.000 0.00 0.00 0.00 3.86
1108 1705 9.547279 TTCCATCTATTCTAGTCCATATAGCAA 57.453 33.333 0.00 0.00 0.00 3.91
1112 1709 8.958060 TCTATTCTAGTCCATATAGCAACCTT 57.042 34.615 0.00 0.00 0.00 3.50
1113 1710 9.026121 TCTATTCTAGTCCATATAGCAACCTTC 57.974 37.037 0.00 0.00 0.00 3.46
1114 1711 7.863901 ATTCTAGTCCATATAGCAACCTTCT 57.136 36.000 0.00 0.00 0.00 2.85
1115 1712 7.676683 TTCTAGTCCATATAGCAACCTTCTT 57.323 36.000 0.00 0.00 0.00 2.52
1116 1713 7.676683 TCTAGTCCATATAGCAACCTTCTTT 57.323 36.000 0.00 0.00 0.00 2.52
1117 1714 8.090788 TCTAGTCCATATAGCAACCTTCTTTT 57.909 34.615 0.00 0.00 0.00 2.27
1118 1715 8.548877 TCTAGTCCATATAGCAACCTTCTTTTT 58.451 33.333 0.00 0.00 0.00 1.94
1175 1773 4.575236 CAGCTCATGCAATATGACTCTTGT 59.425 41.667 0.00 0.00 42.74 3.16
1176 1774 5.066117 CAGCTCATGCAATATGACTCTTGTT 59.934 40.000 0.00 0.00 42.74 2.83
1177 1775 5.066117 AGCTCATGCAATATGACTCTTGTTG 59.934 40.000 0.00 0.00 42.74 3.33
1187 1785 0.756903 ACTCTTGTTGGTACGCTGGT 59.243 50.000 0.00 0.00 0.00 4.00
1188 1786 1.140252 ACTCTTGTTGGTACGCTGGTT 59.860 47.619 0.00 0.00 0.00 3.67
1189 1787 2.366266 ACTCTTGTTGGTACGCTGGTTA 59.634 45.455 0.00 0.00 0.00 2.85
1190 1788 3.007614 ACTCTTGTTGGTACGCTGGTTAT 59.992 43.478 0.00 0.00 0.00 1.89
1191 1789 4.221262 ACTCTTGTTGGTACGCTGGTTATA 59.779 41.667 0.00 0.00 0.00 0.98
1192 1790 5.149973 TCTTGTTGGTACGCTGGTTATAA 57.850 39.130 0.00 0.00 0.00 0.98
1232 1836 8.633075 TTGCTGTTGTATTTTCTCAGAAAAAG 57.367 30.769 16.52 9.26 32.04 2.27
1255 1859 4.651778 CAAAAGAGTGGTATTGTCCCAGA 58.348 43.478 0.00 0.00 31.13 3.86
1258 1862 2.840651 AGAGTGGTATTGTCCCAGAAGG 59.159 50.000 0.00 0.00 31.13 3.46
1452 2056 1.139654 GTGACATGCCCAGAGATAGCA 59.860 52.381 0.00 0.00 41.50 3.49
1690 2294 3.619233 ACATTAACAACACCGCTTGTC 57.381 42.857 0.00 0.00 37.51 3.18
1693 2297 3.889196 TTAACAACACCGCTTGTCATC 57.111 42.857 0.00 0.00 37.51 2.92
1815 2419 1.290955 CAACCTACCGGCTTCGTCA 59.709 57.895 0.00 0.00 0.00 4.35
1839 2443 1.366319 ATGGGCCTGGATATGAGGAC 58.634 55.000 4.53 0.00 37.99 3.85
1850 2454 0.104855 TATGAGGACGAGGCACATGC 59.895 55.000 0.00 0.00 41.14 4.06
1851 2455 2.887568 GAGGACGAGGCACATGCG 60.888 66.667 0.00 0.00 43.26 4.73
1863 2467 2.268076 ACATGCGGCCGCTCTTTTT 61.268 52.632 45.79 23.80 42.51 1.94
1865 2469 0.170116 CATGCGGCCGCTCTTTTTAA 59.830 50.000 45.79 27.14 42.51 1.52
2142 2746 6.307155 CCTACAAGAAATAAGAGCACAAACG 58.693 40.000 0.00 0.00 0.00 3.60
2271 2879 5.994887 TTATTTATTCCAACATCGACCGG 57.005 39.130 0.00 0.00 0.00 5.28
2348 2956 1.066152 CTCGCCGAGATGATGAACAGA 59.934 52.381 8.82 0.00 0.00 3.41
2391 2999 3.401577 GATGAACTCGACGCTGTCA 57.598 52.632 8.91 0.00 32.09 3.58
2637 3245 1.205893 AGTTTCGTCCTGAGAGGCATC 59.794 52.381 0.00 0.00 34.61 3.91
2803 3411 2.502213 AAACCTGCAGGCGTTAAAAC 57.498 45.000 33.06 0.00 39.32 2.43
2820 3428 7.330208 GCGTTAAAACTATCAGTCTACAGGAAA 59.670 37.037 0.00 0.00 0.00 3.13
2873 3481 0.102120 TTTTGCAAGCTCAACCACGG 59.898 50.000 0.00 0.00 0.00 4.94
2874 3482 2.348605 TTTGCAAGCTCAACCACGGC 62.349 55.000 0.00 0.00 0.00 5.68
2893 3501 2.231478 GGCTGGCTGCGTATCTCTATAA 59.769 50.000 10.35 0.00 44.05 0.98
2963 3575 9.667107 ATTGGTAATATTATCCGGAACTATGTG 57.333 33.333 9.01 0.00 0.00 3.21
2964 3576 8.197592 TGGTAATATTATCCGGAACTATGTGT 57.802 34.615 9.01 0.00 0.00 3.72
2965 3577 8.092068 TGGTAATATTATCCGGAACTATGTGTG 58.908 37.037 9.01 0.00 0.00 3.82
2966 3578 7.064253 GGTAATATTATCCGGAACTATGTGTGC 59.936 40.741 9.01 0.00 0.00 4.57
2967 3579 3.897141 TTATCCGGAACTATGTGTGCA 57.103 42.857 9.01 0.00 0.00 4.57
2968 3580 2.779755 ATCCGGAACTATGTGTGCAA 57.220 45.000 9.01 0.00 0.00 4.08
2969 3581 2.093306 TCCGGAACTATGTGTGCAAG 57.907 50.000 0.00 0.00 0.00 4.01
2970 3582 1.621317 TCCGGAACTATGTGTGCAAGA 59.379 47.619 0.00 0.00 0.00 3.02
2971 3583 2.236146 TCCGGAACTATGTGTGCAAGAT 59.764 45.455 0.00 0.00 0.00 2.40
2972 3584 2.352651 CCGGAACTATGTGTGCAAGATG 59.647 50.000 0.00 0.00 0.00 2.90
2973 3585 3.002791 CGGAACTATGTGTGCAAGATGT 58.997 45.455 0.00 0.00 0.00 3.06
2974 3586 3.062639 CGGAACTATGTGTGCAAGATGTC 59.937 47.826 0.00 0.00 0.00 3.06
2975 3587 3.062639 GGAACTATGTGTGCAAGATGTCG 59.937 47.826 0.00 0.00 0.00 4.35
2978 3590 2.168326 ATGTGTGCAAGATGTCGTGA 57.832 45.000 0.00 0.00 0.00 4.35
2989 3601 3.195698 GTCGTGAGGGCGGCATTC 61.196 66.667 12.47 8.60 36.38 2.67
2993 3605 1.675641 GTGAGGGCGGCATTCAGTT 60.676 57.895 12.47 0.00 0.00 3.16
3002 3614 1.666888 CGGCATTCAGTTCTTGGCAAC 60.667 52.381 0.00 0.00 35.82 4.17
3020 3636 5.991606 TGGCAACATACTAGATACTGCATTC 59.008 40.000 0.00 0.00 46.17 2.67
3041 3657 5.734855 TCTGCGCTAATAAAGGAACAATC 57.265 39.130 9.73 0.00 0.00 2.67
3042 3658 4.574828 TCTGCGCTAATAAAGGAACAATCC 59.425 41.667 9.73 0.00 46.98 3.01
3086 3702 5.858381 TGTAACTAGGAGGATGATTGATGC 58.142 41.667 0.00 0.00 0.00 3.91
3087 3703 5.604231 TGTAACTAGGAGGATGATTGATGCT 59.396 40.000 0.00 0.00 34.93 3.79
3088 3704 6.782494 TGTAACTAGGAGGATGATTGATGCTA 59.218 38.462 0.00 0.00 31.70 3.49
3089 3705 6.753913 AACTAGGAGGATGATTGATGCTAA 57.246 37.500 0.00 0.00 31.70 3.09
3090 3706 6.753913 ACTAGGAGGATGATTGATGCTAAA 57.246 37.500 0.00 0.00 31.70 1.85
3091 3707 7.141758 ACTAGGAGGATGATTGATGCTAAAA 57.858 36.000 0.00 0.00 31.70 1.52
3092 3708 7.753630 ACTAGGAGGATGATTGATGCTAAAAT 58.246 34.615 0.00 0.00 31.70 1.82
3093 3709 8.884323 ACTAGGAGGATGATTGATGCTAAAATA 58.116 33.333 0.00 0.00 31.70 1.40
3094 3710 9.730705 CTAGGAGGATGATTGATGCTAAAATAA 57.269 33.333 0.00 0.00 31.70 1.40
3096 3712 9.425248 AGGAGGATGATTGATGCTAAAATAAAA 57.575 29.630 0.00 0.00 31.70 1.52
3124 3740 2.678471 GCCATGGCAGCATTTTTAGT 57.322 45.000 32.08 0.00 41.49 2.24
3125 3741 2.976589 GCCATGGCAGCATTTTTAGTT 58.023 42.857 32.08 0.00 41.49 2.24
3126 3742 2.674357 GCCATGGCAGCATTTTTAGTTG 59.326 45.455 32.08 0.00 41.49 3.16
3127 3743 2.674357 CCATGGCAGCATTTTTAGTTGC 59.326 45.455 0.00 0.00 41.68 4.17
3130 3746 2.064573 GCAGCATTTTTAGTTGCCGT 57.935 45.000 0.00 0.00 39.72 5.68
3131 3747 2.403259 GCAGCATTTTTAGTTGCCGTT 58.597 42.857 0.00 0.00 39.72 4.44
3132 3748 2.155539 GCAGCATTTTTAGTTGCCGTTG 59.844 45.455 0.00 0.00 39.72 4.10
3133 3749 3.380142 CAGCATTTTTAGTTGCCGTTGT 58.620 40.909 0.00 0.00 39.72 3.32
3134 3750 4.541779 CAGCATTTTTAGTTGCCGTTGTA 58.458 39.130 0.00 0.00 39.72 2.41
3135 3751 4.979197 CAGCATTTTTAGTTGCCGTTGTAA 59.021 37.500 0.00 0.00 39.72 2.41
3136 3752 4.979815 AGCATTTTTAGTTGCCGTTGTAAC 59.020 37.500 0.00 0.00 39.72 2.50
3138 3754 5.460748 GCATTTTTAGTTGCCGTTGTAACTT 59.539 36.000 1.53 0.00 43.79 2.66
3139 3755 6.019398 GCATTTTTAGTTGCCGTTGTAACTTT 60.019 34.615 1.53 0.00 43.79 2.66
3140 3756 7.464844 GCATTTTTAGTTGCCGTTGTAACTTTT 60.465 33.333 1.53 0.00 43.79 2.27
3141 3757 7.886405 TTTTTAGTTGCCGTTGTAACTTTTT 57.114 28.000 1.53 0.00 43.79 1.94
3185 3801 7.612065 AGTACCCTAATGTCATAATAGCACA 57.388 36.000 0.00 0.00 0.00 4.57
3186 3802 8.207350 AGTACCCTAATGTCATAATAGCACAT 57.793 34.615 0.00 0.00 31.90 3.21
3187 3803 8.660435 AGTACCCTAATGTCATAATAGCACATT 58.340 33.333 0.00 0.00 42.20 2.71
3188 3804 9.284968 GTACCCTAATGTCATAATAGCACATTT 57.715 33.333 2.10 0.00 40.44 2.32
3189 3805 8.396272 ACCCTAATGTCATAATAGCACATTTC 57.604 34.615 2.10 0.00 40.44 2.17
3190 3806 7.998383 ACCCTAATGTCATAATAGCACATTTCA 59.002 33.333 2.10 0.00 40.44 2.69
3191 3807 8.849168 CCCTAATGTCATAATAGCACATTTCAA 58.151 33.333 2.10 0.00 40.44 2.69
3205 3821 7.940850 AGCACATTTCAAATACACACTTTAGT 58.059 30.769 0.00 0.00 0.00 2.24
3206 3822 9.062524 AGCACATTTCAAATACACACTTTAGTA 57.937 29.630 0.00 0.00 0.00 1.82
3207 3823 9.113876 GCACATTTCAAATACACACTTTAGTAC 57.886 33.333 0.00 0.00 0.00 2.73
3213 3829 9.991388 TTCAAATACACACTTTAGTACAACAAC 57.009 29.630 0.00 0.00 0.00 3.32
3214 3830 9.386010 TCAAATACACACTTTAGTACAACAACT 57.614 29.630 0.00 0.00 0.00 3.16
3215 3831 9.646336 CAAATACACACTTTAGTACAACAACTC 57.354 33.333 0.00 0.00 0.00 3.01
3216 3832 9.609346 AAATACACACTTTAGTACAACAACTCT 57.391 29.630 0.00 0.00 0.00 3.24
3217 3833 8.813643 ATACACACTTTAGTACAACAACTCTC 57.186 34.615 0.00 0.00 0.00 3.20
3218 3834 6.875076 ACACACTTTAGTACAACAACTCTCT 58.125 36.000 0.00 0.00 0.00 3.10
3219 3835 8.004087 ACACACTTTAGTACAACAACTCTCTA 57.996 34.615 0.00 0.00 0.00 2.43
3220 3836 8.472413 ACACACTTTAGTACAACAACTCTCTAA 58.528 33.333 0.00 0.00 0.00 2.10
3221 3837 9.477484 CACACTTTAGTACAACAACTCTCTAAT 57.523 33.333 0.00 0.00 0.00 1.73
3222 3838 9.477484 ACACTTTAGTACAACAACTCTCTAATG 57.523 33.333 0.00 0.00 0.00 1.90
3223 3839 9.477484 CACTTTAGTACAACAACTCTCTAATGT 57.523 33.333 0.00 0.00 0.00 2.71
3275 3891 8.801715 AAGTGTATAATTGAAAGTGCTTTGTG 57.198 30.769 1.51 0.00 32.11 3.33
3276 3892 7.940850 AGTGTATAATTGAAAGTGCTTTGTGT 58.059 30.769 1.51 0.00 32.11 3.72
3277 3893 7.862372 AGTGTATAATTGAAAGTGCTTTGTGTG 59.138 33.333 1.51 0.00 32.11 3.82
3278 3894 6.640499 TGTATAATTGAAAGTGCTTTGTGTGC 59.360 34.615 1.51 0.00 32.11 4.57
3279 3895 3.523606 ATTGAAAGTGCTTTGTGTGCA 57.476 38.095 1.51 0.00 38.19 4.57
3280 3896 3.523606 TTGAAAGTGCTTTGTGTGCAT 57.476 38.095 1.51 0.00 42.69 3.96
3281 3897 4.645762 TTGAAAGTGCTTTGTGTGCATA 57.354 36.364 1.51 0.00 42.69 3.14
3282 3898 4.852134 TGAAAGTGCTTTGTGTGCATAT 57.148 36.364 1.51 0.00 42.69 1.78
3283 3899 5.956068 TGAAAGTGCTTTGTGTGCATATA 57.044 34.783 1.51 0.00 42.69 0.86
3284 3900 6.513806 TGAAAGTGCTTTGTGTGCATATAT 57.486 33.333 1.51 0.00 42.69 0.86
3285 3901 7.622893 TGAAAGTGCTTTGTGTGCATATATA 57.377 32.000 1.51 0.00 42.69 0.86
3286 3902 7.471721 TGAAAGTGCTTTGTGTGCATATATAC 58.528 34.615 1.51 0.00 42.69 1.47
3287 3903 7.120432 TGAAAGTGCTTTGTGTGCATATATACA 59.880 33.333 1.51 0.00 42.69 2.29
3288 3904 7.389803 AAGTGCTTTGTGTGCATATATACAA 57.610 32.000 0.00 0.00 42.69 2.41
3289 3905 6.785191 AGTGCTTTGTGTGCATATATACAAC 58.215 36.000 0.00 0.00 42.69 3.32
3290 3906 6.374053 AGTGCTTTGTGTGCATATATACAACA 59.626 34.615 0.00 0.00 42.69 3.33
3291 3907 7.067372 AGTGCTTTGTGTGCATATATACAACAT 59.933 33.333 0.00 0.00 42.69 2.71
3292 3908 8.341903 GTGCTTTGTGTGCATATATACAACATA 58.658 33.333 0.00 0.00 42.69 2.29
3293 3909 9.065798 TGCTTTGTGTGCATATATACAACATAT 57.934 29.630 0.00 0.00 35.31 1.78
3320 3936 9.816354 ATATTTAGTGCAACAACAACTCTTTTT 57.184 25.926 0.00 0.00 41.43 1.94
3391 4008 6.096673 ACAGGAACAGAAAAACAAAACAGT 57.903 33.333 0.00 0.00 0.00 3.55
3505 4123 0.982852 ATGAAGCCCTCCACCGATCA 60.983 55.000 0.00 0.00 0.00 2.92
3586 4206 5.420725 AGTAACACATTGTCAGCTCCATA 57.579 39.130 0.00 0.00 0.00 2.74
3704 4329 3.749665 CTCTCCCAAGAGCTAAGATGG 57.250 52.381 0.00 0.00 42.54 3.51
3721 4346 1.605165 GGGAAACCGCCACCATTGA 60.605 57.895 0.00 0.00 43.64 2.57
3724 4349 0.887933 GAAACCGCCACCATTGACAT 59.112 50.000 0.00 0.00 0.00 3.06
3803 4428 1.005215 CTGGGCACTGAGAGGGAATTT 59.995 52.381 0.00 0.00 0.00 1.82
3816 4441 2.234908 AGGGAATTTCACACGAGGAGAG 59.765 50.000 0.73 0.00 0.00 3.20
3834 4461 2.099062 GCAAATGCACGGCGAGAG 59.901 61.111 16.62 3.87 41.59 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.455682 GTTCTCGGTGTATATTTCAAATTTGGA 58.544 33.333 17.90 6.72 0.00 3.53
1 2 7.700656 GGTTCTCGGTGTATATTTCAAATTTGG 59.299 37.037 17.90 0.12 0.00 3.28
2 3 8.240682 TGGTTCTCGGTGTATATTTCAAATTTG 58.759 33.333 12.15 12.15 0.00 2.32
3 4 8.343168 TGGTTCTCGGTGTATATTTCAAATTT 57.657 30.769 0.00 0.00 0.00 1.82
4 5 7.931578 TGGTTCTCGGTGTATATTTCAAATT 57.068 32.000 0.00 0.00 0.00 1.82
5 6 7.931578 TTGGTTCTCGGTGTATATTTCAAAT 57.068 32.000 0.00 0.00 0.00 2.32
6 7 7.747155 TTTGGTTCTCGGTGTATATTTCAAA 57.253 32.000 0.00 0.00 0.00 2.69
7 8 7.747155 TTTTGGTTCTCGGTGTATATTTCAA 57.253 32.000 0.00 0.00 0.00 2.69
8 9 7.094549 CCTTTTTGGTTCTCGGTGTATATTTCA 60.095 37.037 0.00 0.00 0.00 2.69
9 10 7.120138 TCCTTTTTGGTTCTCGGTGTATATTTC 59.880 37.037 0.00 0.00 37.07 2.17
10 11 6.943718 TCCTTTTTGGTTCTCGGTGTATATTT 59.056 34.615 0.00 0.00 37.07 1.40
11 12 6.373495 GTCCTTTTTGGTTCTCGGTGTATATT 59.627 38.462 0.00 0.00 37.07 1.28
12 13 5.878669 GTCCTTTTTGGTTCTCGGTGTATAT 59.121 40.000 0.00 0.00 37.07 0.86
13 14 5.221682 TGTCCTTTTTGGTTCTCGGTGTATA 60.222 40.000 0.00 0.00 37.07 1.47
14 15 4.070009 GTCCTTTTTGGTTCTCGGTGTAT 58.930 43.478 0.00 0.00 37.07 2.29
15 16 3.118334 TGTCCTTTTTGGTTCTCGGTGTA 60.118 43.478 0.00 0.00 37.07 2.90
16 17 2.294979 GTCCTTTTTGGTTCTCGGTGT 58.705 47.619 0.00 0.00 37.07 4.16
17 18 2.294074 TGTCCTTTTTGGTTCTCGGTG 58.706 47.619 0.00 0.00 37.07 4.94
18 19 2.721425 TGTCCTTTTTGGTTCTCGGT 57.279 45.000 0.00 0.00 37.07 4.69
19 20 4.546570 GATTTGTCCTTTTTGGTTCTCGG 58.453 43.478 0.00 0.00 37.07 4.63
20 21 4.037446 TGGATTTGTCCTTTTTGGTTCTCG 59.963 41.667 0.00 0.00 37.07 4.04
21 22 5.529581 TGGATTTGTCCTTTTTGGTTCTC 57.470 39.130 0.00 0.00 37.07 2.87
22 23 5.602145 TCATGGATTTGTCCTTTTTGGTTCT 59.398 36.000 0.00 0.00 37.07 3.01
23 24 5.852827 TCATGGATTTGTCCTTTTTGGTTC 58.147 37.500 0.00 0.00 37.07 3.62
24 25 5.885449 TCATGGATTTGTCCTTTTTGGTT 57.115 34.783 0.00 0.00 37.07 3.67
25 26 5.543405 TCATCATGGATTTGTCCTTTTTGGT 59.457 36.000 0.00 0.00 37.07 3.67
26 27 6.040209 TCATCATGGATTTGTCCTTTTTGG 57.960 37.500 0.00 0.00 37.10 3.28
27 28 9.309516 CTATTCATCATGGATTTGTCCTTTTTG 57.690 33.333 0.00 0.00 0.00 2.44
28 29 9.039165 ACTATTCATCATGGATTTGTCCTTTTT 57.961 29.630 0.00 0.00 0.00 1.94
29 30 8.472413 CACTATTCATCATGGATTTGTCCTTTT 58.528 33.333 0.00 0.00 0.00 2.27
30 31 7.616935 ACACTATTCATCATGGATTTGTCCTTT 59.383 33.333 0.00 0.00 0.00 3.11
31 32 7.121382 ACACTATTCATCATGGATTTGTCCTT 58.879 34.615 0.00 0.00 0.00 3.36
32 33 6.666678 ACACTATTCATCATGGATTTGTCCT 58.333 36.000 0.00 0.00 0.00 3.85
33 34 6.543465 TGACACTATTCATCATGGATTTGTCC 59.457 38.462 14.05 0.00 30.77 4.02
34 35 7.558161 TGACACTATTCATCATGGATTTGTC 57.442 36.000 11.29 11.29 0.00 3.18
35 36 7.943079 TTGACACTATTCATCATGGATTTGT 57.057 32.000 0.00 0.00 0.00 2.83
36 37 9.297586 CTTTTGACACTATTCATCATGGATTTG 57.702 33.333 0.00 0.00 0.00 2.32
37 38 9.246670 TCTTTTGACACTATTCATCATGGATTT 57.753 29.630 0.00 0.00 0.00 2.17
38 39 8.812513 TCTTTTGACACTATTCATCATGGATT 57.187 30.769 0.00 0.00 0.00 3.01
39 40 8.812513 TTCTTTTGACACTATTCATCATGGAT 57.187 30.769 0.00 0.00 0.00 3.41
40 41 8.102676 TCTTCTTTTGACACTATTCATCATGGA 58.897 33.333 0.00 0.00 0.00 3.41
41 42 8.180267 GTCTTCTTTTGACACTATTCATCATGG 58.820 37.037 0.00 0.00 34.80 3.66
42 43 8.724229 TGTCTTCTTTTGACACTATTCATCATG 58.276 33.333 0.00 0.00 39.23 3.07
43 44 8.853077 TGTCTTCTTTTGACACTATTCATCAT 57.147 30.769 0.00 0.00 39.23 2.45
44 45 8.675705 TTGTCTTCTTTTGACACTATTCATCA 57.324 30.769 0.00 0.00 43.13 3.07
45 46 9.950680 TTTTGTCTTCTTTTGACACTATTCATC 57.049 29.630 0.00 0.00 43.13 2.92
47 48 9.567848 GTTTTTGTCTTCTTTTGACACTATTCA 57.432 29.630 0.00 0.00 43.13 2.57
48 49 9.567848 TGTTTTTGTCTTCTTTTGACACTATTC 57.432 29.630 0.00 0.00 43.13 1.75
49 50 9.921637 TTGTTTTTGTCTTCTTTTGACACTATT 57.078 25.926 0.00 0.00 43.13 1.73
50 51 9.921637 TTTGTTTTTGTCTTCTTTTGACACTAT 57.078 25.926 0.00 0.00 43.13 2.12
51 52 9.751542 TTTTGTTTTTGTCTTCTTTTGACACTA 57.248 25.926 0.00 0.00 43.13 2.74
52 53 8.655651 TTTTGTTTTTGTCTTCTTTTGACACT 57.344 26.923 0.00 0.00 43.13 3.55
53 54 9.877137 ATTTTTGTTTTTGTCTTCTTTTGACAC 57.123 25.926 0.00 0.00 43.13 3.67
54 55 9.875675 CATTTTTGTTTTTGTCTTCTTTTGACA 57.124 25.926 0.00 0.00 41.94 3.58
57 58 9.875675 TGTCATTTTTGTTTTTGTCTTCTTTTG 57.124 25.926 0.00 0.00 0.00 2.44
58 59 9.877137 GTGTCATTTTTGTTTTTGTCTTCTTTT 57.123 25.926 0.00 0.00 0.00 2.27
59 60 9.271828 AGTGTCATTTTTGTTTTTGTCTTCTTT 57.728 25.926 0.00 0.00 0.00 2.52
60 61 8.831715 AGTGTCATTTTTGTTTTTGTCTTCTT 57.168 26.923 0.00 0.00 0.00 2.52
64 65 9.868277 TGAATAGTGTCATTTTTGTTTTTGTCT 57.132 25.926 0.00 0.00 0.00 3.41
65 66 9.900264 GTGAATAGTGTCATTTTTGTTTTTGTC 57.100 29.630 0.00 0.00 0.00 3.18
66 67 9.429359 TGTGAATAGTGTCATTTTTGTTTTTGT 57.571 25.926 0.00 0.00 0.00 2.83
70 71 9.467258 CAGATGTGAATAGTGTCATTTTTGTTT 57.533 29.630 0.00 0.00 0.00 2.83
71 72 8.849168 TCAGATGTGAATAGTGTCATTTTTGTT 58.151 29.630 0.00 0.00 0.00 2.83
72 73 8.394971 TCAGATGTGAATAGTGTCATTTTTGT 57.605 30.769 0.00 0.00 0.00 2.83
87 88 8.945481 ACAAAAATGACAAATTCAGATGTGAA 57.055 26.923 7.86 7.86 46.81 3.18
88 89 8.945481 AACAAAAATGACAAATTCAGATGTGA 57.055 26.923 0.00 0.00 37.77 3.58
89 90 9.640974 GAAACAAAAATGACAAATTCAGATGTG 57.359 29.630 0.00 0.00 37.77 3.21
90 91 9.603921 AGAAACAAAAATGACAAATTCAGATGT 57.396 25.926 0.00 0.00 37.77 3.06
92 93 9.264719 GGAGAAACAAAAATGACAAATTCAGAT 57.735 29.630 0.00 0.00 37.77 2.90
93 94 7.434897 CGGAGAAACAAAAATGACAAATTCAGA 59.565 33.333 0.00 0.00 37.77 3.27
94 95 7.222611 ACGGAGAAACAAAAATGACAAATTCAG 59.777 33.333 0.00 0.00 37.77 3.02
95 96 7.009999 CACGGAGAAACAAAAATGACAAATTCA 59.990 33.333 0.00 0.00 39.11 2.57
96 97 7.010091 ACACGGAGAAACAAAAATGACAAATTC 59.990 33.333 0.00 0.00 0.00 2.17
97 98 6.816140 ACACGGAGAAACAAAAATGACAAATT 59.184 30.769 0.00 0.00 0.00 1.82
98 99 6.255453 CACACGGAGAAACAAAAATGACAAAT 59.745 34.615 0.00 0.00 0.00 2.32
99 100 5.574830 CACACGGAGAAACAAAAATGACAAA 59.425 36.000 0.00 0.00 0.00 2.83
100 101 5.098893 CACACGGAGAAACAAAAATGACAA 58.901 37.500 0.00 0.00 0.00 3.18
101 102 4.156922 ACACACGGAGAAACAAAAATGACA 59.843 37.500 0.00 0.00 0.00 3.58
102 103 4.668289 ACACACGGAGAAACAAAAATGAC 58.332 39.130 0.00 0.00 0.00 3.06
103 104 4.974368 ACACACGGAGAAACAAAAATGA 57.026 36.364 0.00 0.00 0.00 2.57
104 105 7.357206 CGAATTACACACGGAGAAACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
105 106 6.635239 CGAATTACACACGGAGAAACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
106 107 5.966503 CGAATTACACACGGAGAAACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
107 108 5.064962 ACGAATTACACACGGAGAAACAAAA 59.935 36.000 0.00 0.00 0.00 2.44
108 109 4.571580 ACGAATTACACACGGAGAAACAAA 59.428 37.500 0.00 0.00 0.00 2.83
109 110 4.121317 ACGAATTACACACGGAGAAACAA 58.879 39.130 0.00 0.00 0.00 2.83
110 111 3.719924 ACGAATTACACACGGAGAAACA 58.280 40.909 0.00 0.00 0.00 2.83
111 112 6.399204 AATACGAATTACACACGGAGAAAC 57.601 37.500 0.00 0.00 0.00 2.78
112 113 6.128499 CCAAATACGAATTACACACGGAGAAA 60.128 38.462 0.00 0.00 0.00 2.52
113 114 5.349270 CCAAATACGAATTACACACGGAGAA 59.651 40.000 0.00 0.00 0.00 2.87
114 115 4.865925 CCAAATACGAATTACACACGGAGA 59.134 41.667 0.00 0.00 0.00 3.71
115 116 4.865925 TCCAAATACGAATTACACACGGAG 59.134 41.667 0.00 0.00 0.00 4.63
116 117 4.818642 TCCAAATACGAATTACACACGGA 58.181 39.130 0.00 0.00 0.00 4.69
117 118 5.522460 AGATCCAAATACGAATTACACACGG 59.478 40.000 0.00 0.00 0.00 4.94
118 119 6.254804 TCAGATCCAAATACGAATTACACACG 59.745 38.462 0.00 0.00 0.00 4.49
119 120 7.534085 TCAGATCCAAATACGAATTACACAC 57.466 36.000 0.00 0.00 0.00 3.82
120 121 8.731275 ATTCAGATCCAAATACGAATTACACA 57.269 30.769 0.00 0.00 0.00 3.72
127 128 8.682710 CCCTAAAAATTCAGATCCAAATACGAA 58.317 33.333 0.00 0.00 0.00 3.85
128 129 7.284489 CCCCTAAAAATTCAGATCCAAATACGA 59.716 37.037 0.00 0.00 0.00 3.43
129 130 7.068226 ACCCCTAAAAATTCAGATCCAAATACG 59.932 37.037 0.00 0.00 0.00 3.06
130 131 8.306313 ACCCCTAAAAATTCAGATCCAAATAC 57.694 34.615 0.00 0.00 0.00 1.89
131 132 8.757877 CAACCCCTAAAAATTCAGATCCAAATA 58.242 33.333 0.00 0.00 0.00 1.40
132 133 7.237471 ACAACCCCTAAAAATTCAGATCCAAAT 59.763 33.333 0.00 0.00 0.00 2.32
133 134 6.556874 ACAACCCCTAAAAATTCAGATCCAAA 59.443 34.615 0.00 0.00 0.00 3.28
134 135 6.081356 ACAACCCCTAAAAATTCAGATCCAA 58.919 36.000 0.00 0.00 0.00 3.53
135 136 5.650283 ACAACCCCTAAAAATTCAGATCCA 58.350 37.500 0.00 0.00 0.00 3.41
136 137 5.163652 CGACAACCCCTAAAAATTCAGATCC 60.164 44.000 0.00 0.00 0.00 3.36
137 138 5.646360 TCGACAACCCCTAAAAATTCAGATC 59.354 40.000 0.00 0.00 0.00 2.75
138 139 5.414765 GTCGACAACCCCTAAAAATTCAGAT 59.585 40.000 11.55 0.00 0.00 2.90
139 140 4.758165 GTCGACAACCCCTAAAAATTCAGA 59.242 41.667 11.55 0.00 0.00 3.27
140 141 4.517453 TGTCGACAACCCCTAAAAATTCAG 59.483 41.667 17.62 0.00 0.00 3.02
141 142 4.462133 TGTCGACAACCCCTAAAAATTCA 58.538 39.130 17.62 0.00 0.00 2.57
142 143 5.638596 ATGTCGACAACCCCTAAAAATTC 57.361 39.130 24.13 0.00 0.00 2.17
143 144 6.717997 ACTTATGTCGACAACCCCTAAAAATT 59.282 34.615 24.13 3.36 0.00 1.82
144 145 6.150474 CACTTATGTCGACAACCCCTAAAAAT 59.850 38.462 24.13 3.58 0.00 1.82
145 146 5.470777 CACTTATGTCGACAACCCCTAAAAA 59.529 40.000 24.13 5.17 0.00 1.94
146 147 4.998672 CACTTATGTCGACAACCCCTAAAA 59.001 41.667 24.13 6.14 0.00 1.52
147 148 4.040706 ACACTTATGTCGACAACCCCTAAA 59.959 41.667 24.13 7.45 31.55 1.85
148 149 3.579586 ACACTTATGTCGACAACCCCTAA 59.420 43.478 24.13 14.60 31.55 2.69
149 150 3.167485 ACACTTATGTCGACAACCCCTA 58.833 45.455 24.13 7.06 31.55 3.53
150 151 1.975680 ACACTTATGTCGACAACCCCT 59.024 47.619 24.13 8.19 31.55 4.79
151 152 2.467566 ACACTTATGTCGACAACCCC 57.532 50.000 24.13 0.00 31.55 4.95
152 153 5.163794 CCAAATACACTTATGTCGACAACCC 60.164 44.000 24.13 0.00 40.48 4.11
153 154 5.640357 TCCAAATACACTTATGTCGACAACC 59.360 40.000 24.13 0.00 40.48 3.77
154 155 6.715344 TCCAAATACACTTATGTCGACAAC 57.285 37.500 24.13 0.00 40.48 3.32
155 156 7.100409 TGATCCAAATACACTTATGTCGACAA 58.900 34.615 24.13 5.99 40.48 3.18
156 157 6.635755 TGATCCAAATACACTTATGTCGACA 58.364 36.000 22.48 22.48 40.48 4.35
157 158 7.534085 TTGATCCAAATACACTTATGTCGAC 57.466 36.000 9.11 9.11 40.48 4.20
158 159 8.731275 AATTGATCCAAATACACTTATGTCGA 57.269 30.769 0.00 0.00 40.48 4.20
159 160 9.787532 AAAATTGATCCAAATACACTTATGTCG 57.212 29.630 0.00 0.00 40.48 4.35
220 221 6.242396 TGCTCCTATGCTACCAACTTAAAAA 58.758 36.000 0.00 0.00 0.00 1.94
221 222 5.811190 TGCTCCTATGCTACCAACTTAAAA 58.189 37.500 0.00 0.00 0.00 1.52
222 223 5.429681 TGCTCCTATGCTACCAACTTAAA 57.570 39.130 0.00 0.00 0.00 1.52
223 224 5.611374 GATGCTCCTATGCTACCAACTTAA 58.389 41.667 0.00 0.00 0.00 1.85
224 225 4.262036 CGATGCTCCTATGCTACCAACTTA 60.262 45.833 0.00 0.00 0.00 2.24
225 226 3.493350 CGATGCTCCTATGCTACCAACTT 60.493 47.826 0.00 0.00 0.00 2.66
226 227 2.036475 CGATGCTCCTATGCTACCAACT 59.964 50.000 0.00 0.00 0.00 3.16
227 228 2.408050 CGATGCTCCTATGCTACCAAC 58.592 52.381 0.00 0.00 0.00 3.77
228 229 1.344438 CCGATGCTCCTATGCTACCAA 59.656 52.381 0.00 0.00 0.00 3.67
229 230 0.969149 CCGATGCTCCTATGCTACCA 59.031 55.000 0.00 0.00 0.00 3.25
230 231 1.203523 CTCCGATGCTCCTATGCTACC 59.796 57.143 0.00 0.00 0.00 3.18
231 232 1.203523 CCTCCGATGCTCCTATGCTAC 59.796 57.143 0.00 0.00 0.00 3.58
232 233 1.550327 CCTCCGATGCTCCTATGCTA 58.450 55.000 0.00 0.00 0.00 3.49
233 234 1.190833 CCCTCCGATGCTCCTATGCT 61.191 60.000 0.00 0.00 0.00 3.79
234 235 1.294780 CCCTCCGATGCTCCTATGC 59.705 63.158 0.00 0.00 0.00 3.14
235 236 1.051812 AACCCTCCGATGCTCCTATG 58.948 55.000 0.00 0.00 0.00 2.23
236 237 1.051812 CAACCCTCCGATGCTCCTAT 58.948 55.000 0.00 0.00 0.00 2.57
237 238 1.048724 CCAACCCTCCGATGCTCCTA 61.049 60.000 0.00 0.00 0.00 2.94
238 239 2.370445 CCAACCCTCCGATGCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
239 240 1.335132 TACCAACCCTCCGATGCTCC 61.335 60.000 0.00 0.00 0.00 4.70
240 241 0.759346 ATACCAACCCTCCGATGCTC 59.241 55.000 0.00 0.00 0.00 4.26
241 242 0.759346 GATACCAACCCTCCGATGCT 59.241 55.000 0.00 0.00 0.00 3.79
242 243 0.468226 TGATACCAACCCTCCGATGC 59.532 55.000 0.00 0.00 0.00 3.91
243 244 1.202651 GGTGATACCAACCCTCCGATG 60.203 57.143 0.00 0.00 38.42 3.84
244 245 1.129058 GGTGATACCAACCCTCCGAT 58.871 55.000 0.00 0.00 38.42 4.18
245 246 0.042131 AGGTGATACCAACCCTCCGA 59.958 55.000 0.28 0.00 41.95 4.55
246 247 1.784358 TAGGTGATACCAACCCTCCG 58.216 55.000 0.28 0.00 41.95 4.63
247 248 4.906060 AGTATTAGGTGATACCAACCCTCC 59.094 45.833 0.28 0.00 41.95 4.30
248 249 6.496144 AAGTATTAGGTGATACCAACCCTC 57.504 41.667 0.28 0.00 41.95 4.30
249 250 6.126565 GGAAAGTATTAGGTGATACCAACCCT 60.127 42.308 0.28 0.00 41.95 4.34
250 251 6.060136 GGAAAGTATTAGGTGATACCAACCC 58.940 44.000 0.28 0.00 41.95 4.11
251 252 6.060136 GGGAAAGTATTAGGTGATACCAACC 58.940 44.000 0.28 0.00 41.95 3.77
252 253 6.655930 TGGGAAAGTATTAGGTGATACCAAC 58.344 40.000 0.28 0.00 41.95 3.77
253 254 6.894735 TGGGAAAGTATTAGGTGATACCAA 57.105 37.500 0.28 0.00 41.95 3.67
254 255 6.849697 AGATGGGAAAGTATTAGGTGATACCA 59.150 38.462 0.28 0.00 41.95 3.25
255 256 7.317722 AGATGGGAAAGTATTAGGTGATACC 57.682 40.000 0.00 0.00 38.99 2.73
256 257 7.387643 GGAGATGGGAAAGTATTAGGTGATAC 58.612 42.308 0.00 0.00 33.61 2.24
257 258 6.210784 CGGAGATGGGAAAGTATTAGGTGATA 59.789 42.308 0.00 0.00 0.00 2.15
258 259 5.012148 CGGAGATGGGAAAGTATTAGGTGAT 59.988 44.000 0.00 0.00 0.00 3.06
259 260 4.344102 CGGAGATGGGAAAGTATTAGGTGA 59.656 45.833 0.00 0.00 0.00 4.02
260 261 4.503296 CCGGAGATGGGAAAGTATTAGGTG 60.503 50.000 0.00 0.00 0.00 4.00
261 262 3.646637 CCGGAGATGGGAAAGTATTAGGT 59.353 47.826 0.00 0.00 0.00 3.08
262 263 3.646637 ACCGGAGATGGGAAAGTATTAGG 59.353 47.826 9.46 0.00 0.00 2.69
263 264 4.957684 ACCGGAGATGGGAAAGTATTAG 57.042 45.455 9.46 0.00 0.00 1.73
264 265 4.279169 CGTACCGGAGATGGGAAAGTATTA 59.721 45.833 9.46 0.00 0.00 0.98
265 266 3.069158 CGTACCGGAGATGGGAAAGTATT 59.931 47.826 9.46 0.00 0.00 1.89
266 267 2.626743 CGTACCGGAGATGGGAAAGTAT 59.373 50.000 9.46 0.00 0.00 2.12
267 268 2.026641 CGTACCGGAGATGGGAAAGTA 58.973 52.381 9.46 0.00 0.00 2.24
268 269 0.822164 CGTACCGGAGATGGGAAAGT 59.178 55.000 9.46 0.00 0.00 2.66
269 270 0.529992 GCGTACCGGAGATGGGAAAG 60.530 60.000 9.46 0.00 0.00 2.62
270 271 0.974010 AGCGTACCGGAGATGGGAAA 60.974 55.000 9.46 0.00 0.00 3.13
271 272 1.380785 AGCGTACCGGAGATGGGAA 60.381 57.895 9.46 0.00 0.00 3.97
272 273 1.826921 GAGCGTACCGGAGATGGGA 60.827 63.158 9.46 0.00 0.00 4.37
273 274 2.728817 GAGCGTACCGGAGATGGG 59.271 66.667 9.46 0.00 0.00 4.00
274 275 1.828660 AGGAGCGTACCGGAGATGG 60.829 63.158 9.46 0.00 34.73 3.51
275 276 1.360551 CAGGAGCGTACCGGAGATG 59.639 63.158 9.46 1.56 34.73 2.90
276 277 1.828660 CCAGGAGCGTACCGGAGAT 60.829 63.158 9.46 0.00 34.73 2.75
277 278 2.439701 CCAGGAGCGTACCGGAGA 60.440 66.667 9.46 0.00 34.73 3.71
278 279 2.005960 CTTCCAGGAGCGTACCGGAG 62.006 65.000 9.46 0.00 35.43 4.63
279 280 2.036098 TTCCAGGAGCGTACCGGA 59.964 61.111 9.46 5.88 33.44 5.14
280 281 1.601419 TTCTTCCAGGAGCGTACCGG 61.601 60.000 0.00 0.00 34.73 5.28
281 282 0.460311 ATTCTTCCAGGAGCGTACCG 59.540 55.000 0.00 0.00 34.73 4.02
282 283 2.093658 TCAATTCTTCCAGGAGCGTACC 60.094 50.000 0.00 0.00 0.00 3.34
283 284 3.119101 TCTCAATTCTTCCAGGAGCGTAC 60.119 47.826 0.00 0.00 0.00 3.67
284 285 3.096852 TCTCAATTCTTCCAGGAGCGTA 58.903 45.455 0.00 0.00 0.00 4.42
285 286 1.902508 TCTCAATTCTTCCAGGAGCGT 59.097 47.619 0.00 0.00 0.00 5.07
286 287 2.275318 GTCTCAATTCTTCCAGGAGCG 58.725 52.381 0.00 0.00 0.00 5.03
287 288 3.006247 GTGTCTCAATTCTTCCAGGAGC 58.994 50.000 0.00 0.00 0.00 4.70
288 289 3.008375 TGGTGTCTCAATTCTTCCAGGAG 59.992 47.826 0.00 0.00 0.00 3.69
289 290 2.978978 TGGTGTCTCAATTCTTCCAGGA 59.021 45.455 0.00 0.00 0.00 3.86
290 291 3.423539 TGGTGTCTCAATTCTTCCAGG 57.576 47.619 0.00 0.00 0.00 4.45
291 292 4.580167 TGTTTGGTGTCTCAATTCTTCCAG 59.420 41.667 0.00 0.00 0.00 3.86
292 293 4.338118 GTGTTTGGTGTCTCAATTCTTCCA 59.662 41.667 0.00 0.00 0.00 3.53
293 294 4.580580 AGTGTTTGGTGTCTCAATTCTTCC 59.419 41.667 0.00 0.00 0.00 3.46
294 295 5.506317 CCAGTGTTTGGTGTCTCAATTCTTC 60.506 44.000 0.00 0.00 42.41 2.87
295 296 4.339247 CCAGTGTTTGGTGTCTCAATTCTT 59.661 41.667 0.00 0.00 42.41 2.52
296 297 3.885297 CCAGTGTTTGGTGTCTCAATTCT 59.115 43.478 0.00 0.00 42.41 2.40
297 298 4.228912 CCAGTGTTTGGTGTCTCAATTC 57.771 45.455 0.00 0.00 42.41 2.17
336 337 0.250081 TCCACACACGCATTAGCACA 60.250 50.000 0.00 0.00 42.27 4.57
374 376 1.401931 CGTCGACCCGTACATTCACTT 60.402 52.381 10.58 0.00 0.00 3.16
424 434 3.696051 GCCTCAGCCTTGATTTGTAATGA 59.304 43.478 0.00 0.00 31.68 2.57
425 435 3.698040 AGCCTCAGCCTTGATTTGTAATG 59.302 43.478 0.00 0.00 41.25 1.90
485 495 3.006537 ACGCTCCGCCACTTATGTAATAT 59.993 43.478 0.00 0.00 0.00 1.28
486 496 2.363038 ACGCTCCGCCACTTATGTAATA 59.637 45.455 0.00 0.00 0.00 0.98
650 772 3.118482 TGCATTCCTTGGAGATCAGAGAC 60.118 47.826 0.00 0.00 0.00 3.36
906 1498 0.540923 TCCATGCATCGTGGACATGA 59.459 50.000 3.30 0.00 43.70 3.07
907 1499 3.083686 TCCATGCATCGTGGACATG 57.916 52.632 3.30 0.00 43.70 3.21
980 1574 4.379499 GCATCCAACTTGGTTAACTGTAGC 60.379 45.833 7.72 0.00 39.03 3.58
982 1576 4.517453 GTGCATCCAACTTGGTTAACTGTA 59.483 41.667 7.72 0.00 39.03 2.74
983 1577 3.317993 GTGCATCCAACTTGGTTAACTGT 59.682 43.478 7.72 0.00 39.03 3.55
984 1578 3.305335 GGTGCATCCAACTTGGTTAACTG 60.305 47.826 7.72 0.00 39.03 3.16
987 1582 2.950781 TGGTGCATCCAACTTGGTTAA 58.049 42.857 7.72 0.00 44.12 2.01
1024 1621 4.204799 AGGGGTGTTTTAAGACTTGTGTC 58.795 43.478 0.00 0.00 43.22 3.67
1065 1662 5.306678 AGATGGAAAGCTCTGGAATAGGTAG 59.693 44.000 0.00 0.00 0.00 3.18
1066 1663 5.219739 AGATGGAAAGCTCTGGAATAGGTA 58.780 41.667 0.00 0.00 0.00 3.08
1067 1664 4.043596 AGATGGAAAGCTCTGGAATAGGT 58.956 43.478 0.00 0.00 0.00 3.08
1068 1665 4.703379 AGATGGAAAGCTCTGGAATAGG 57.297 45.455 0.00 0.00 0.00 2.57
1077 1674 6.412362 TGGACTAGAATAGATGGAAAGCTC 57.588 41.667 0.00 0.00 42.77 4.09
1118 1715 0.614294 TGGACTATCCCCGCGAAAAA 59.386 50.000 8.23 0.00 35.03 1.94
1119 1716 0.834612 ATGGACTATCCCCGCGAAAA 59.165 50.000 8.23 0.00 35.03 2.29
1120 1717 1.707106 TATGGACTATCCCCGCGAAA 58.293 50.000 8.23 0.00 35.03 3.46
1121 1718 1.933021 ATATGGACTATCCCCGCGAA 58.067 50.000 8.23 0.00 35.03 4.70
1122 1719 2.651455 CTATATGGACTATCCCCGCGA 58.349 52.381 8.23 0.00 35.03 5.87
1123 1720 1.067212 GCTATATGGACTATCCCCGCG 59.933 57.143 0.00 0.00 35.03 6.46
1124 1721 2.108168 TGCTATATGGACTATCCCCGC 58.892 52.381 0.00 0.00 35.03 6.13
1125 1722 2.431057 GGTGCTATATGGACTATCCCCG 59.569 54.545 0.00 0.00 35.03 5.73
1126 1723 2.772515 GGGTGCTATATGGACTATCCCC 59.227 54.545 0.00 0.00 35.03 4.81
1127 1724 3.452627 CAGGGTGCTATATGGACTATCCC 59.547 52.174 0.00 0.00 35.03 3.85
1128 1725 4.160626 GTCAGGGTGCTATATGGACTATCC 59.839 50.000 0.00 0.00 37.18 2.59
1129 1726 4.160626 GGTCAGGGTGCTATATGGACTATC 59.839 50.000 0.00 0.00 37.18 2.08
1130 1727 4.097418 GGTCAGGGTGCTATATGGACTAT 58.903 47.826 0.00 0.00 37.18 2.12
1133 1730 2.037772 CTGGTCAGGGTGCTATATGGAC 59.962 54.545 0.00 0.00 36.19 4.02
1175 1773 7.389330 CCATGATAATTATAACCAGCGTACCAA 59.611 37.037 0.00 0.00 0.00 3.67
1176 1774 6.876789 CCATGATAATTATAACCAGCGTACCA 59.123 38.462 0.00 0.00 0.00 3.25
1177 1775 6.183360 GCCATGATAATTATAACCAGCGTACC 60.183 42.308 0.00 0.00 0.00 3.34
1187 1785 8.163408 ACAGCAAGGTAGCCATGATAATTATAA 58.837 33.333 0.00 0.00 34.23 0.98
1188 1786 7.689299 ACAGCAAGGTAGCCATGATAATTATA 58.311 34.615 0.00 0.00 34.23 0.98
1189 1787 6.546484 ACAGCAAGGTAGCCATGATAATTAT 58.454 36.000 0.00 0.00 34.23 1.28
1190 1788 5.940617 ACAGCAAGGTAGCCATGATAATTA 58.059 37.500 0.00 0.00 34.23 1.40
1191 1789 4.796606 ACAGCAAGGTAGCCATGATAATT 58.203 39.130 0.00 0.00 34.23 1.40
1192 1790 4.443978 ACAGCAAGGTAGCCATGATAAT 57.556 40.909 0.00 0.00 34.23 1.28
1232 1836 3.153919 TGGGACAATACCACTCTTTTGC 58.846 45.455 0.00 0.00 31.92 3.68
1255 1859 0.246635 CCTCGTCGTGTCCATTCCTT 59.753 55.000 0.00 0.00 0.00 3.36
1258 1862 0.526662 AGACCTCGTCGTGTCCATTC 59.473 55.000 12.03 0.00 37.67 2.67
1261 1865 2.916052 GCAGACCTCGTCGTGTCCA 61.916 63.158 12.03 0.00 37.67 4.02
1264 1868 2.645567 CAGCAGACCTCGTCGTGT 59.354 61.111 0.00 0.00 37.67 4.49
1452 2056 3.700038 CCTTCTTCCGTAGTACCTCACAT 59.300 47.826 0.00 0.00 0.00 3.21
1815 2419 3.331889 CCTCATATCCAGGCCCATTAGTT 59.668 47.826 0.00 0.00 0.00 2.24
1850 2454 1.136774 GCCTTAAAAAGAGCGGCCG 59.863 57.895 24.05 24.05 34.75 6.13
1863 2467 1.072266 ACACATGGTTGAGGGCCTTA 58.928 50.000 7.89 0.00 0.00 2.69
1865 2469 0.328258 GTACACATGGTTGAGGGCCT 59.672 55.000 5.25 5.25 0.00 5.19
1999 2603 0.181114 CTTTCATGGATCCGCTCCCA 59.819 55.000 7.39 0.00 44.23 4.37
2142 2746 2.225255 GAGGTAGATCGTACTAACCGCC 59.775 54.545 0.00 0.00 31.14 6.13
2271 2879 1.885887 TGCAAGCACCATTTCCTACAC 59.114 47.619 0.00 0.00 0.00 2.90
2300 2908 1.712401 CAACCGCATTTGATGGGTTG 58.288 50.000 18.25 18.25 45.78 3.77
2348 2956 3.863142 GCTTTTTGCATGATCTCTGGT 57.137 42.857 0.00 0.00 42.31 4.00
2391 2999 7.363031 TCCTGGACTAGTCTATCTTTACCAAT 58.637 38.462 21.88 0.00 0.00 3.16
2423 3031 9.436957 GATTTGAGATAATTTAGCCGAGGAATA 57.563 33.333 0.00 0.00 0.00 1.75
2613 3221 2.691011 GCCTCTCAGGACGAAACTCTAT 59.309 50.000 0.00 0.00 37.67 1.98
2615 3223 0.892063 GCCTCTCAGGACGAAACTCT 59.108 55.000 0.00 0.00 37.67 3.24
2637 3245 5.869344 TGAGAAGAACATTCACGGTATTCAG 59.131 40.000 0.00 0.00 0.00 3.02
2803 3411 5.236047 GCATTGCTTTCCTGTAGACTGATAG 59.764 44.000 0.16 0.00 0.00 2.08
2873 3481 3.577649 TTATAGAGATACGCAGCCAGC 57.422 47.619 0.00 0.00 40.87 4.85
2874 3482 5.714047 TCATTTATAGAGATACGCAGCCAG 58.286 41.667 0.00 0.00 0.00 4.85
2952 3564 3.002791 ACATCTTGCACACATAGTTCCG 58.997 45.455 0.00 0.00 0.00 4.30
2961 3573 0.792640 CCTCACGACATCTTGCACAC 59.207 55.000 0.00 0.00 0.00 3.82
2962 3574 0.320683 CCCTCACGACATCTTGCACA 60.321 55.000 0.00 0.00 0.00 4.57
2963 3575 1.639298 GCCCTCACGACATCTTGCAC 61.639 60.000 0.00 0.00 0.00 4.57
2964 3576 1.375908 GCCCTCACGACATCTTGCA 60.376 57.895 0.00 0.00 0.00 4.08
2965 3577 2.456119 CGCCCTCACGACATCTTGC 61.456 63.158 0.00 0.00 34.06 4.01
2966 3578 1.811266 CCGCCCTCACGACATCTTG 60.811 63.158 0.00 0.00 34.06 3.02
2967 3579 2.579201 CCGCCCTCACGACATCTT 59.421 61.111 0.00 0.00 34.06 2.40
2968 3580 4.148825 GCCGCCCTCACGACATCT 62.149 66.667 0.00 0.00 34.06 2.90
2969 3581 3.740128 ATGCCGCCCTCACGACATC 62.740 63.158 0.00 0.00 29.72 3.06
2970 3582 3.329542 AATGCCGCCCTCACGACAT 62.330 57.895 0.00 0.00 37.77 3.06
2971 3583 3.950794 GAATGCCGCCCTCACGACA 62.951 63.158 0.00 0.00 34.06 4.35
2972 3584 3.195698 GAATGCCGCCCTCACGAC 61.196 66.667 0.00 0.00 34.06 4.34
2973 3585 3.664025 CTGAATGCCGCCCTCACGA 62.664 63.158 0.00 0.00 34.06 4.35
2974 3586 3.197790 CTGAATGCCGCCCTCACG 61.198 66.667 0.00 0.00 0.00 4.35
2975 3587 1.648467 GAACTGAATGCCGCCCTCAC 61.648 60.000 0.00 0.00 0.00 3.51
2978 3590 0.962356 CAAGAACTGAATGCCGCCCT 60.962 55.000 0.00 0.00 0.00 5.19
2989 3601 7.223582 CAGTATCTAGTATGTTGCCAAGAACTG 59.776 40.741 0.00 0.00 0.00 3.16
2993 3605 5.128663 TGCAGTATCTAGTATGTTGCCAAGA 59.871 40.000 0.00 0.00 0.00 3.02
3016 3628 5.484173 TGTTCCTTTATTAGCGCAGAATG 57.516 39.130 11.47 0.00 40.87 2.67
3017 3629 6.238759 GGATTGTTCCTTTATTAGCGCAGAAT 60.239 38.462 11.47 11.59 39.14 2.40
3020 3636 4.552767 CGGATTGTTCCTTTATTAGCGCAG 60.553 45.833 11.47 0.00 40.17 5.18
3025 3641 5.924475 ATCGCGGATTGTTCCTTTATTAG 57.076 39.130 6.13 0.00 40.17 1.73
3026 3642 6.055231 CAATCGCGGATTGTTCCTTTATTA 57.945 37.500 6.13 0.00 42.89 0.98
3041 3657 6.370593 ACATTAATTATAGCAACAATCGCGG 58.629 36.000 6.13 0.00 0.00 6.46
3042 3658 8.827599 GTTACATTAATTATAGCAACAATCGCG 58.172 33.333 0.00 0.00 0.00 5.87
3043 3659 9.878599 AGTTACATTAATTATAGCAACAATCGC 57.121 29.630 0.00 0.00 0.00 4.58
3105 3721 2.674357 CAACTAAAAATGCTGCCATGGC 59.326 45.455 30.54 30.54 42.35 4.40
3106 3722 2.674357 GCAACTAAAAATGCTGCCATGG 59.326 45.455 7.63 7.63 39.46 3.66
3113 3729 3.726291 ACAACGGCAACTAAAAATGCT 57.274 38.095 0.00 0.00 42.20 3.79
3114 3730 4.979815 AGTTACAACGGCAACTAAAAATGC 59.020 37.500 0.00 0.00 41.82 3.56
3115 3731 7.458038 AAAGTTACAACGGCAACTAAAAATG 57.542 32.000 0.00 0.00 33.92 2.32
3116 3732 8.481974 AAAAAGTTACAACGGCAACTAAAAAT 57.518 26.923 0.00 0.00 33.92 1.82
3117 3733 7.886405 AAAAAGTTACAACGGCAACTAAAAA 57.114 28.000 0.00 0.00 33.92 1.94
3159 3775 9.150028 TGTGCTATTATGACATTAGGGTACTAA 57.850 33.333 0.00 0.00 42.95 2.24
3160 3776 8.715190 TGTGCTATTATGACATTAGGGTACTA 57.285 34.615 0.00 0.00 0.00 1.82
3161 3777 7.612065 TGTGCTATTATGACATTAGGGTACT 57.388 36.000 0.00 0.00 0.00 2.73
3162 3778 8.848474 AATGTGCTATTATGACATTAGGGTAC 57.152 34.615 0.00 0.00 38.29 3.34
3163 3779 9.502091 GAAATGTGCTATTATGACATTAGGGTA 57.498 33.333 0.00 0.00 38.96 3.69
3164 3780 7.998383 TGAAATGTGCTATTATGACATTAGGGT 59.002 33.333 0.00 0.00 38.96 4.34
3165 3781 8.394971 TGAAATGTGCTATTATGACATTAGGG 57.605 34.615 0.00 0.00 38.96 3.53
3179 3795 9.062524 ACTAAAGTGTGTATTTGAAATGTGCTA 57.937 29.630 0.00 0.00 0.00 3.49
3180 3796 7.940850 ACTAAAGTGTGTATTTGAAATGTGCT 58.059 30.769 0.00 0.00 0.00 4.40
3181 3797 9.113876 GTACTAAAGTGTGTATTTGAAATGTGC 57.886 33.333 0.00 0.00 0.00 4.57
3187 3803 9.991388 GTTGTTGTACTAAAGTGTGTATTTGAA 57.009 29.630 0.00 0.00 0.00 2.69
3188 3804 9.386010 AGTTGTTGTACTAAAGTGTGTATTTGA 57.614 29.630 0.00 0.00 0.00 2.69
3189 3805 9.646336 GAGTTGTTGTACTAAAGTGTGTATTTG 57.354 33.333 0.00 0.00 0.00 2.32
3190 3806 9.609346 AGAGTTGTTGTACTAAAGTGTGTATTT 57.391 29.630 0.00 0.00 0.00 1.40
3191 3807 9.257651 GAGAGTTGTTGTACTAAAGTGTGTATT 57.742 33.333 0.00 0.00 0.00 1.89
3192 3808 8.639761 AGAGAGTTGTTGTACTAAAGTGTGTAT 58.360 33.333 0.00 0.00 0.00 2.29
3193 3809 8.004087 AGAGAGTTGTTGTACTAAAGTGTGTA 57.996 34.615 0.00 0.00 0.00 2.90
3194 3810 6.875076 AGAGAGTTGTTGTACTAAAGTGTGT 58.125 36.000 0.00 0.00 0.00 3.72
3195 3811 8.867112 TTAGAGAGTTGTTGTACTAAAGTGTG 57.133 34.615 0.00 0.00 0.00 3.82
3196 3812 9.477484 CATTAGAGAGTTGTTGTACTAAAGTGT 57.523 33.333 0.00 0.00 0.00 3.55
3197 3813 9.477484 ACATTAGAGAGTTGTTGTACTAAAGTG 57.523 33.333 0.00 0.00 0.00 3.16
3249 3865 9.891828 CACAAAGCACTTTCAATTATACACTTA 57.108 29.630 0.00 0.00 0.00 2.24
3250 3866 8.413229 ACACAAAGCACTTTCAATTATACACTT 58.587 29.630 0.00 0.00 0.00 3.16
3251 3867 7.862372 CACACAAAGCACTTTCAATTATACACT 59.138 33.333 0.00 0.00 0.00 3.55
3252 3868 7.358352 GCACACAAAGCACTTTCAATTATACAC 60.358 37.037 0.00 0.00 0.00 2.90
3253 3869 6.640499 GCACACAAAGCACTTTCAATTATACA 59.360 34.615 0.00 0.00 0.00 2.29
3254 3870 6.640499 TGCACACAAAGCACTTTCAATTATAC 59.360 34.615 0.00 0.00 37.02 1.47
3255 3871 6.743110 TGCACACAAAGCACTTTCAATTATA 58.257 32.000 0.00 0.00 37.02 0.98
3256 3872 5.599732 TGCACACAAAGCACTTTCAATTAT 58.400 33.333 0.00 0.00 37.02 1.28
3257 3873 5.003692 TGCACACAAAGCACTTTCAATTA 57.996 34.783 0.00 0.00 37.02 1.40
3258 3874 3.859443 TGCACACAAAGCACTTTCAATT 58.141 36.364 0.00 0.00 37.02 2.32
3259 3875 3.523606 TGCACACAAAGCACTTTCAAT 57.476 38.095 0.00 0.00 37.02 2.57
3260 3876 3.523606 ATGCACACAAAGCACTTTCAA 57.476 38.095 0.00 0.00 45.95 2.69
3261 3877 4.852134 ATATGCACACAAAGCACTTTCA 57.148 36.364 0.00 0.00 45.95 2.69
3262 3878 7.471721 TGTATATATGCACACAAAGCACTTTC 58.528 34.615 0.00 0.00 45.95 2.62
3263 3879 7.389803 TGTATATATGCACACAAAGCACTTT 57.610 32.000 0.00 0.00 45.95 2.66
3264 3880 7.094420 TGTTGTATATATGCACACAAAGCACTT 60.094 33.333 2.64 0.00 45.95 3.16
3265 3881 6.374053 TGTTGTATATATGCACACAAAGCACT 59.626 34.615 2.64 0.00 45.95 4.40
3266 3882 6.550843 TGTTGTATATATGCACACAAAGCAC 58.449 36.000 2.64 0.00 45.95 4.40
3294 3910 9.816354 AAAAAGAGTTGTTGTTGCACTAAATAT 57.184 25.926 0.00 0.00 0.00 1.28
3319 3935 4.261825 CCGGTTGATGGCTAAACTGAAAAA 60.262 41.667 0.00 0.00 35.12 1.94
3320 3936 3.254657 CCGGTTGATGGCTAAACTGAAAA 59.745 43.478 0.00 0.00 35.12 2.29
3321 3937 2.817258 CCGGTTGATGGCTAAACTGAAA 59.183 45.455 0.00 0.00 35.12 2.69
3322 3938 2.432444 CCGGTTGATGGCTAAACTGAA 58.568 47.619 0.00 0.00 35.12 3.02
3323 3939 2.107950 CCGGTTGATGGCTAAACTGA 57.892 50.000 0.00 0.00 35.12 3.41
3391 4008 6.715347 TGCAGAGCACTATGTATCTCTTAA 57.285 37.500 0.00 0.00 33.99 1.85
3505 4123 1.832608 TCACTGAGCGGTGGACTGT 60.833 57.895 9.39 0.00 37.75 3.55
3586 4206 2.748058 ATCCGTTTTGACCGCAGCCT 62.748 55.000 0.00 0.00 0.00 4.58
3704 4329 1.175983 TGTCAATGGTGGCGGTTTCC 61.176 55.000 0.00 0.00 29.15 3.13
3717 4342 3.081804 GTTTGGTCTTCCCGATGTCAAT 58.918 45.455 0.00 0.00 35.15 2.57
3721 4346 0.768622 TGGTTTGGTCTTCCCGATGT 59.231 50.000 0.00 0.00 35.15 3.06
3724 4349 0.685097 CTCTGGTTTGGTCTTCCCGA 59.315 55.000 0.00 0.00 35.15 5.14
3803 4428 0.976641 ATTTGCCTCTCCTCGTGTGA 59.023 50.000 0.00 0.00 0.00 3.58
3816 4441 3.386867 CTCTCGCCGTGCATTTGCC 62.387 63.158 0.00 0.00 41.18 4.52
3834 4461 2.780065 TGCAGCTTTGTCATCAACAC 57.220 45.000 0.00 0.00 37.70 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.