Multiple sequence alignment - TraesCS2A01G009300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G009300 chr2A 100.000 4565 0 0 1 4565 3793470 3798034 0.000000e+00 8431.0
1 TraesCS2A01G009300 chr2D 93.881 3350 164 28 360 3686 5229639 5232970 0.000000e+00 5012.0
2 TraesCS2A01G009300 chr2D 93.319 464 28 3 3805 4266 5233437 5233899 0.000000e+00 682.0
3 TraesCS2A01G009300 chr2D 87.657 397 36 8 493 886 80043307 80043693 2.500000e-122 449.0
4 TraesCS2A01G009300 chr2D 95.417 240 9 2 4324 4562 5234174 5234412 9.270000e-102 381.0
5 TraesCS2A01G009300 chr2D 98.387 62 1 0 4265 4326 5233926 5233987 4.830000e-20 110.0
6 TraesCS2A01G009300 chr2B 98.893 542 5 1 1038 1579 153610925 153611465 0.000000e+00 966.0
7 TraesCS2A01G009300 chr7B 98.524 542 7 1 1038 1579 674195290 674195830 0.000000e+00 955.0
8 TraesCS2A01G009300 chrUn 88.803 518 51 3 2936 3446 327237632 327237115 3.000000e-176 628.0
9 TraesCS2A01G009300 chrUn 88.803 518 51 3 2936 3446 327243658 327243141 3.000000e-176 628.0
10 TraesCS2A01G009300 chr7D 88.803 518 51 3 2936 3446 133497676 133497159 3.000000e-176 628.0
11 TraesCS2A01G009300 chr7D 88.803 518 51 3 2936 3446 133606826 133607343 3.000000e-176 628.0
12 TraesCS2A01G009300 chr7D 86.616 523 57 7 2936 3446 99487998 99487477 2.380000e-157 566.0
13 TraesCS2A01G009300 chr6B 98.006 351 6 1 1229 1579 539182804 539183153 3.910000e-170 608.0
14 TraesCS2A01G009300 chr6B 98.611 72 1 0 1038 1109 539182549 539182620 1.330000e-25 128.0
15 TraesCS2A01G009300 chr5A 86.160 513 51 9 2936 3446 572407330 572407824 1.870000e-148 536.0
16 TraesCS2A01G009300 chr1B 85.409 514 54 11 2936 3446 66183085 66182590 8.760000e-142 514.0
17 TraesCS2A01G009300 chr1B 87.086 302 32 3 3151 3446 268825540 268825240 7.320000e-88 335.0
18 TraesCS2A01G009300 chr1B 100.000 30 0 0 2558 2587 674606939 674606968 6.380000e-04 56.5
19 TraesCS2A01G009300 chr3D 90.196 357 30 2 3035 3390 466381698 466381346 1.160000e-125 460.0
20 TraesCS2A01G009300 chr6D 87.719 57 7 0 2561 2617 351126690 351126746 2.950000e-07 67.6
21 TraesCS2A01G009300 chr6A 86.885 61 7 1 2561 2621 492332037 492331978 2.950000e-07 67.6
22 TraesCS2A01G009300 chr4A 100.000 33 0 0 2555 2587 75428564 75428532 1.370000e-05 62.1
23 TraesCS2A01G009300 chr1D 85.484 62 5 4 2558 2617 484301859 484301918 1.370000e-05 62.1
24 TraesCS2A01G009300 chr1A 85.246 61 7 2 2558 2617 581541793 581541852 1.370000e-05 62.1
25 TraesCS2A01G009300 chr5D 94.872 39 0 2 2229 2267 406593104 406593140 4.930000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G009300 chr2A 3793470 3798034 4564 False 8431.00 8431 100.0000 1 4565 1 chr2A.!!$F1 4564
1 TraesCS2A01G009300 chr2D 5229639 5234412 4773 False 1546.25 5012 95.2510 360 4562 4 chr2D.!!$F2 4202
2 TraesCS2A01G009300 chr2B 153610925 153611465 540 False 966.00 966 98.8930 1038 1579 1 chr2B.!!$F1 541
3 TraesCS2A01G009300 chr7B 674195290 674195830 540 False 955.00 955 98.5240 1038 1579 1 chr7B.!!$F1 541
4 TraesCS2A01G009300 chrUn 327237115 327237632 517 True 628.00 628 88.8030 2936 3446 1 chrUn.!!$R1 510
5 TraesCS2A01G009300 chrUn 327243141 327243658 517 True 628.00 628 88.8030 2936 3446 1 chrUn.!!$R2 510
6 TraesCS2A01G009300 chr7D 133497159 133497676 517 True 628.00 628 88.8030 2936 3446 1 chr7D.!!$R2 510
7 TraesCS2A01G009300 chr7D 133606826 133607343 517 False 628.00 628 88.8030 2936 3446 1 chr7D.!!$F1 510
8 TraesCS2A01G009300 chr7D 99487477 99487998 521 True 566.00 566 86.6160 2936 3446 1 chr7D.!!$R1 510
9 TraesCS2A01G009300 chr6B 539182549 539183153 604 False 368.00 608 98.3085 1038 1579 2 chr6B.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.036952 CTGACTCCCTGCGTTGACAT 60.037 55.0 0.00 0.0 0.00 3.06 F
73 74 0.037326 TGACTCCCTGCGTTGACATC 60.037 55.0 0.00 0.0 0.00 3.06 F
349 350 0.042431 ACTCCCTCCAGCTGTGATCT 59.958 55.0 13.81 0.0 0.00 2.75 F
530 531 0.396278 TGGTTCCATGTGCACCAACA 60.396 50.0 15.69 0.0 37.66 3.33 F
890 895 0.405198 TGGTGCATGTGGAACCATCT 59.595 50.0 7.38 0.0 39.05 2.90 F
2433 2512 0.463295 AAGATGAGAGGTGCATGCCG 60.463 55.0 16.68 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1914 1990 1.375396 GTACATGTCCACCAGCGCA 60.375 57.895 11.47 0.00 0.00 6.09 R
2103 2179 1.153549 GGACATGGTGGTCTCGCTC 60.154 63.158 0.00 0.00 37.91 5.03 R
2377 2453 2.937379 GATGGCAGCTGCATCTCCGT 62.937 60.000 37.63 22.03 44.36 4.69 R
2424 2500 0.240678 TGATGTTGTTCGGCATGCAC 59.759 50.000 21.36 9.98 0.00 4.57 R
2629 2708 0.037697 TTCCAGGTGATGACGTTCCG 60.038 55.000 0.00 0.00 0.00 4.30 R
3718 3813 0.178068 TTTACTGCCGAGCTCATCCC 59.822 55.000 15.40 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.149101 CCCTAGCCCCATTATGGTGT 58.851 55.000 10.65 0.00 35.17 4.16
20 21 1.073923 CCCTAGCCCCATTATGGTGTC 59.926 57.143 10.65 0.00 35.17 3.67
21 22 1.270839 CCTAGCCCCATTATGGTGTCG 60.271 57.143 10.65 0.00 35.17 4.35
22 23 0.762418 TAGCCCCATTATGGTGTCGG 59.238 55.000 10.65 5.25 35.17 4.79
23 24 0.986019 AGCCCCATTATGGTGTCGGA 60.986 55.000 10.65 0.00 35.17 4.55
24 25 0.818040 GCCCCATTATGGTGTCGGAC 60.818 60.000 10.65 0.00 35.17 4.79
25 26 0.544223 CCCCATTATGGTGTCGGACA 59.456 55.000 10.65 6.76 35.17 4.02
26 27 1.065053 CCCCATTATGGTGTCGGACAA 60.065 52.381 13.23 0.00 35.17 3.18
27 28 2.014128 CCCATTATGGTGTCGGACAAC 58.986 52.381 19.08 19.08 35.17 3.32
33 34 1.948104 TGGTGTCGGACAACAAAGAG 58.052 50.000 25.57 0.00 43.83 2.85
34 35 1.208535 TGGTGTCGGACAACAAAGAGT 59.791 47.619 25.57 0.00 43.83 3.24
35 36 1.865340 GGTGTCGGACAACAAAGAGTC 59.135 52.381 20.81 1.39 35.45 3.36
36 37 1.521423 GTGTCGGACAACAAAGAGTCG 59.479 52.381 13.23 0.00 35.63 4.18
37 38 1.137513 GTCGGACAACAAAGAGTCGG 58.862 55.000 2.62 0.00 35.63 4.79
38 39 1.034356 TCGGACAACAAAGAGTCGGA 58.966 50.000 0.00 0.00 40.37 4.55
39 40 1.616865 TCGGACAACAAAGAGTCGGAT 59.383 47.619 0.00 0.00 38.60 4.18
40 41 1.726791 CGGACAACAAAGAGTCGGATG 59.273 52.381 0.00 0.00 37.29 3.51
41 42 1.464997 GGACAACAAAGAGTCGGATGC 59.535 52.381 0.00 0.00 35.63 3.91
42 43 2.143122 GACAACAAAGAGTCGGATGCA 58.857 47.619 0.00 0.00 0.00 3.96
43 44 2.548057 GACAACAAAGAGTCGGATGCAA 59.452 45.455 0.00 0.00 0.00 4.08
44 45 3.149196 ACAACAAAGAGTCGGATGCAAT 58.851 40.909 0.00 0.00 0.00 3.56
45 46 3.058016 ACAACAAAGAGTCGGATGCAATG 60.058 43.478 0.00 0.00 0.00 2.82
46 47 1.470098 ACAAAGAGTCGGATGCAATGC 59.530 47.619 0.00 0.00 0.00 3.56
47 48 1.098050 AAAGAGTCGGATGCAATGCC 58.902 50.000 1.53 0.00 0.00 4.40
48 49 0.254178 AAGAGTCGGATGCAATGCCT 59.746 50.000 1.53 0.00 0.00 4.75
49 50 0.179062 AGAGTCGGATGCAATGCCTC 60.179 55.000 1.53 1.66 0.00 4.70
50 51 0.462581 GAGTCGGATGCAATGCCTCA 60.463 55.000 12.29 0.00 0.00 3.86
51 52 0.745845 AGTCGGATGCAATGCCTCAC 60.746 55.000 12.29 3.31 0.00 3.51
52 53 0.745845 GTCGGATGCAATGCCTCACT 60.746 55.000 12.29 0.00 0.00 3.41
53 54 0.462581 TCGGATGCAATGCCTCACTC 60.463 55.000 12.29 0.00 0.00 3.51
54 55 0.463295 CGGATGCAATGCCTCACTCT 60.463 55.000 12.29 0.00 0.00 3.24
55 56 1.022735 GGATGCAATGCCTCACTCTG 58.977 55.000 12.29 0.00 0.00 3.35
56 57 1.407851 GGATGCAATGCCTCACTCTGA 60.408 52.381 12.29 0.00 0.00 3.27
57 58 1.669779 GATGCAATGCCTCACTCTGAC 59.330 52.381 1.53 0.00 0.00 3.51
58 59 0.689055 TGCAATGCCTCACTCTGACT 59.311 50.000 1.53 0.00 0.00 3.41
59 60 1.338484 TGCAATGCCTCACTCTGACTC 60.338 52.381 1.53 0.00 0.00 3.36
60 61 2.011046 GCAATGCCTCACTCTGACTCC 61.011 57.143 0.00 0.00 0.00 3.85
61 62 0.908198 AATGCCTCACTCTGACTCCC 59.092 55.000 0.00 0.00 0.00 4.30
62 63 0.042431 ATGCCTCACTCTGACTCCCT 59.958 55.000 0.00 0.00 0.00 4.20
63 64 0.902048 TGCCTCACTCTGACTCCCTG 60.902 60.000 0.00 0.00 0.00 4.45
64 65 1.896694 CCTCACTCTGACTCCCTGC 59.103 63.158 0.00 0.00 0.00 4.85
65 66 1.510383 CTCACTCTGACTCCCTGCG 59.490 63.158 0.00 0.00 0.00 5.18
66 67 1.228583 TCACTCTGACTCCCTGCGT 60.229 57.895 0.00 0.00 0.00 5.24
67 68 0.827925 TCACTCTGACTCCCTGCGTT 60.828 55.000 0.00 0.00 0.00 4.84
68 69 0.668706 CACTCTGACTCCCTGCGTTG 60.669 60.000 0.00 0.00 0.00 4.10
69 70 0.827925 ACTCTGACTCCCTGCGTTGA 60.828 55.000 0.00 0.00 0.00 3.18
70 71 0.389166 CTCTGACTCCCTGCGTTGAC 60.389 60.000 0.00 0.00 0.00 3.18
71 72 1.112916 TCTGACTCCCTGCGTTGACA 61.113 55.000 0.00 0.00 0.00 3.58
72 73 0.036952 CTGACTCCCTGCGTTGACAT 60.037 55.000 0.00 0.00 0.00 3.06
73 74 0.037326 TGACTCCCTGCGTTGACATC 60.037 55.000 0.00 0.00 0.00 3.06
74 75 0.741221 GACTCCCTGCGTTGACATCC 60.741 60.000 0.00 0.00 0.00 3.51
75 76 1.450312 CTCCCTGCGTTGACATCCC 60.450 63.158 0.00 0.00 0.00 3.85
76 77 1.903877 CTCCCTGCGTTGACATCCCT 61.904 60.000 0.00 0.00 0.00 4.20
77 78 1.450312 CCCTGCGTTGACATCCCTC 60.450 63.158 0.00 0.00 0.00 4.30
78 79 1.599047 CCTGCGTTGACATCCCTCT 59.401 57.895 0.00 0.00 0.00 3.69
79 80 0.824109 CCTGCGTTGACATCCCTCTA 59.176 55.000 0.00 0.00 0.00 2.43
80 81 1.202463 CCTGCGTTGACATCCCTCTAG 60.202 57.143 0.00 0.00 0.00 2.43
81 82 1.478510 CTGCGTTGACATCCCTCTAGT 59.521 52.381 0.00 0.00 0.00 2.57
82 83 1.204704 TGCGTTGACATCCCTCTAGTG 59.795 52.381 0.00 0.00 0.00 2.74
83 84 1.471676 GCGTTGACATCCCTCTAGTGG 60.472 57.143 3.70 3.70 0.00 4.00
84 85 1.825474 CGTTGACATCCCTCTAGTGGT 59.175 52.381 9.90 0.00 0.00 4.16
85 86 2.159226 CGTTGACATCCCTCTAGTGGTC 60.159 54.545 9.90 1.75 0.00 4.02
86 87 1.763968 TGACATCCCTCTAGTGGTCG 58.236 55.000 9.90 0.78 0.00 4.79
87 88 0.386113 GACATCCCTCTAGTGGTCGC 59.614 60.000 9.90 0.00 0.00 5.19
88 89 0.324368 ACATCCCTCTAGTGGTCGCA 60.324 55.000 9.90 0.00 0.00 5.10
89 90 1.043816 CATCCCTCTAGTGGTCGCAT 58.956 55.000 9.90 0.00 0.00 4.73
90 91 1.043816 ATCCCTCTAGTGGTCGCATG 58.956 55.000 9.90 0.00 0.00 4.06
91 92 1.227380 CCCTCTAGTGGTCGCATGC 60.227 63.158 7.91 7.91 0.00 4.06
92 93 1.680522 CCCTCTAGTGGTCGCATGCT 61.681 60.000 17.13 0.00 0.00 3.79
93 94 0.176680 CCTCTAGTGGTCGCATGCTT 59.823 55.000 17.13 0.00 0.00 3.91
94 95 1.565305 CTCTAGTGGTCGCATGCTTC 58.435 55.000 17.13 8.24 0.00 3.86
95 96 0.179137 TCTAGTGGTCGCATGCTTCG 60.179 55.000 17.13 0.00 0.00 3.79
96 97 1.148157 CTAGTGGTCGCATGCTTCGG 61.148 60.000 17.13 0.00 0.00 4.30
97 98 4.166011 GTGGTCGCATGCTTCGGC 62.166 66.667 17.13 1.03 42.19 5.54
103 104 2.255252 GCATGCTTCGGCGTTGTT 59.745 55.556 11.37 0.00 45.37 2.83
104 105 2.082366 GCATGCTTCGGCGTTGTTG 61.082 57.895 11.37 1.02 45.37 3.33
105 106 1.573932 CATGCTTCGGCGTTGTTGA 59.426 52.632 6.85 0.00 45.37 3.18
106 107 0.725784 CATGCTTCGGCGTTGTTGAC 60.726 55.000 6.85 0.00 45.37 3.18
107 108 1.852067 ATGCTTCGGCGTTGTTGACC 61.852 55.000 6.85 0.00 45.37 4.02
108 109 2.251642 GCTTCGGCGTTGTTGACCT 61.252 57.895 6.85 0.00 0.00 3.85
109 110 0.947180 GCTTCGGCGTTGTTGACCTA 60.947 55.000 6.85 0.00 0.00 3.08
110 111 0.788391 CTTCGGCGTTGTTGACCTAC 59.212 55.000 6.85 0.00 0.00 3.18
111 112 0.104487 TTCGGCGTTGTTGACCTACA 59.896 50.000 6.85 0.00 0.00 2.74
112 113 0.319083 TCGGCGTTGTTGACCTACAT 59.681 50.000 6.85 0.00 0.00 2.29
113 114 0.442310 CGGCGTTGTTGACCTACATG 59.558 55.000 0.00 0.00 0.00 3.21
114 115 1.803334 GGCGTTGTTGACCTACATGA 58.197 50.000 0.00 0.00 0.00 3.07
115 116 1.732259 GGCGTTGTTGACCTACATGAG 59.268 52.381 0.00 0.00 0.00 2.90
126 127 3.238108 CCTACATGAGGCGCCTATTAG 57.762 52.381 32.97 24.15 38.96 1.73
127 128 2.563179 CCTACATGAGGCGCCTATTAGT 59.437 50.000 32.97 25.94 38.96 2.24
128 129 2.821991 ACATGAGGCGCCTATTAGTC 57.178 50.000 32.97 17.17 0.00 2.59
129 130 2.039418 ACATGAGGCGCCTATTAGTCA 58.961 47.619 32.97 22.85 0.00 3.41
130 131 2.434336 ACATGAGGCGCCTATTAGTCAA 59.566 45.455 32.97 7.98 0.00 3.18
131 132 3.071602 ACATGAGGCGCCTATTAGTCAAT 59.928 43.478 32.97 11.90 0.00 2.57
132 133 3.838244 TGAGGCGCCTATTAGTCAATT 57.162 42.857 32.97 1.35 0.00 2.32
133 134 4.948341 TGAGGCGCCTATTAGTCAATTA 57.052 40.909 32.97 0.00 0.00 1.40
134 135 5.483685 TGAGGCGCCTATTAGTCAATTAT 57.516 39.130 32.97 0.50 0.00 1.28
135 136 5.237815 TGAGGCGCCTATTAGTCAATTATG 58.762 41.667 32.97 0.00 0.00 1.90
136 137 5.221641 TGAGGCGCCTATTAGTCAATTATGT 60.222 40.000 32.97 0.00 0.00 2.29
137 138 4.997395 AGGCGCCTATTAGTCAATTATGTG 59.003 41.667 31.86 0.00 0.00 3.21
138 139 4.154195 GGCGCCTATTAGTCAATTATGTGG 59.846 45.833 22.15 0.00 0.00 4.17
139 140 4.378459 GCGCCTATTAGTCAATTATGTGGC 60.378 45.833 0.00 0.00 0.00 5.01
140 141 4.754618 CGCCTATTAGTCAATTATGTGGCA 59.245 41.667 0.00 0.00 36.75 4.92
141 142 5.412594 CGCCTATTAGTCAATTATGTGGCAT 59.587 40.000 0.00 0.00 36.75 4.40
142 143 6.615088 GCCTATTAGTCAATTATGTGGCATG 58.385 40.000 0.00 0.00 36.91 4.06
143 144 6.430925 GCCTATTAGTCAATTATGTGGCATGA 59.569 38.462 0.00 0.00 36.91 3.07
144 145 7.573843 GCCTATTAGTCAATTATGTGGCATGAC 60.574 40.741 8.27 8.27 40.45 3.06
145 146 7.445096 CCTATTAGTCAATTATGTGGCATGACA 59.555 37.037 16.41 0.00 42.12 3.58
146 147 7.828508 ATTAGTCAATTATGTGGCATGACAT 57.171 32.000 3.50 4.75 42.12 3.06
147 148 7.643569 TTAGTCAATTATGTGGCATGACATT 57.356 32.000 3.50 0.00 42.12 2.71
148 149 6.140303 AGTCAATTATGTGGCATGACATTC 57.860 37.500 3.50 0.00 42.12 2.67
149 150 5.653330 AGTCAATTATGTGGCATGACATTCA 59.347 36.000 3.50 0.00 42.12 2.57
150 151 5.745294 GTCAATTATGTGGCATGACATTCAC 59.255 40.000 3.50 10.28 40.02 3.18
151 152 4.924305 ATTATGTGGCATGACATTCACC 57.076 40.909 3.50 0.00 37.70 4.02
152 153 2.219080 ATGTGGCATGACATTCACCA 57.781 45.000 3.50 0.00 32.38 4.17
153 154 2.219080 TGTGGCATGACATTCACCAT 57.781 45.000 3.50 0.00 27.37 3.55
154 155 3.362870 TGTGGCATGACATTCACCATA 57.637 42.857 3.50 5.59 27.37 2.74
155 156 3.694926 TGTGGCATGACATTCACCATAA 58.305 40.909 3.50 1.72 27.37 1.90
156 157 4.085009 TGTGGCATGACATTCACCATAAA 58.915 39.130 3.50 0.00 27.37 1.40
157 158 4.158209 TGTGGCATGACATTCACCATAAAG 59.842 41.667 3.50 0.00 27.37 1.85
158 159 4.158394 GTGGCATGACATTCACCATAAAGT 59.842 41.667 3.50 0.00 27.37 2.66
159 160 4.158209 TGGCATGACATTCACCATAAAGTG 59.842 41.667 0.00 0.00 39.20 3.16
160 161 4.398988 GGCATGACATTCACCATAAAGTGA 59.601 41.667 0.00 0.00 44.89 3.41
161 162 5.068198 GGCATGACATTCACCATAAAGTGAT 59.932 40.000 0.00 0.00 45.80 3.06
162 163 5.975344 GCATGACATTCACCATAAAGTGATG 59.025 40.000 0.00 0.00 45.80 3.07
163 164 6.405065 GCATGACATTCACCATAAAGTGATGT 60.405 38.462 0.00 8.47 45.80 3.06
164 165 7.541162 CATGACATTCACCATAAAGTGATGTT 58.459 34.615 0.00 0.00 45.80 2.71
165 166 8.676401 CATGACATTCACCATAAAGTGATGTTA 58.324 33.333 0.00 1.13 45.80 2.41
166 167 8.267620 TGACATTCACCATAAAGTGATGTTAG 57.732 34.615 0.00 0.00 45.80 2.34
167 168 7.882791 TGACATTCACCATAAAGTGATGTTAGT 59.117 33.333 0.00 0.00 45.80 2.24
168 169 9.378551 GACATTCACCATAAAGTGATGTTAGTA 57.621 33.333 0.00 0.00 45.80 1.82
169 170 9.162764 ACATTCACCATAAAGTGATGTTAGTAC 57.837 33.333 0.00 0.00 45.80 2.73
170 171 8.612619 CATTCACCATAAAGTGATGTTAGTACC 58.387 37.037 0.00 0.00 45.80 3.34
171 172 7.490657 TCACCATAAAGTGATGTTAGTACCT 57.509 36.000 0.00 0.00 41.78 3.08
172 173 7.913789 TCACCATAAAGTGATGTTAGTACCTT 58.086 34.615 0.00 0.00 41.78 3.50
173 174 9.038072 TCACCATAAAGTGATGTTAGTACCTTA 57.962 33.333 0.00 0.00 41.78 2.69
174 175 9.832445 CACCATAAAGTGATGTTAGTACCTTAT 57.168 33.333 0.00 0.00 40.34 1.73
182 183 8.643324 AGTGATGTTAGTACCTTATCTGATTCC 58.357 37.037 0.00 0.00 0.00 3.01
183 184 8.421784 GTGATGTTAGTACCTTATCTGATTCCA 58.578 37.037 0.00 0.00 0.00 3.53
184 185 8.988060 TGATGTTAGTACCTTATCTGATTCCAA 58.012 33.333 0.00 0.00 0.00 3.53
185 186 9.262358 GATGTTAGTACCTTATCTGATTCCAAC 57.738 37.037 0.00 0.00 0.00 3.77
186 187 7.562135 TGTTAGTACCTTATCTGATTCCAACC 58.438 38.462 0.00 0.00 0.00 3.77
187 188 7.181305 TGTTAGTACCTTATCTGATTCCAACCA 59.819 37.037 0.00 0.00 0.00 3.67
188 189 6.240549 AGTACCTTATCTGATTCCAACCAG 57.759 41.667 0.00 0.00 0.00 4.00
189 190 3.891049 ACCTTATCTGATTCCAACCAGC 58.109 45.455 0.00 0.00 0.00 4.85
190 191 3.266772 ACCTTATCTGATTCCAACCAGCA 59.733 43.478 0.00 0.00 0.00 4.41
191 192 4.263905 ACCTTATCTGATTCCAACCAGCAA 60.264 41.667 0.00 0.00 0.00 3.91
192 193 4.891756 CCTTATCTGATTCCAACCAGCAAT 59.108 41.667 0.00 0.00 0.00 3.56
193 194 6.064060 CCTTATCTGATTCCAACCAGCAATA 58.936 40.000 0.00 0.00 0.00 1.90
194 195 6.718454 CCTTATCTGATTCCAACCAGCAATAT 59.282 38.462 0.00 0.00 0.00 1.28
195 196 7.232127 CCTTATCTGATTCCAACCAGCAATATT 59.768 37.037 0.00 0.00 0.00 1.28
196 197 8.537728 TTATCTGATTCCAACCAGCAATATTT 57.462 30.769 0.00 0.00 0.00 1.40
197 198 6.211587 TCTGATTCCAACCAGCAATATTTG 57.788 37.500 0.00 0.00 0.00 2.32
215 216 9.356433 CAATATTTGCACAATCAAATACACTGA 57.644 29.630 10.08 0.00 45.86 3.41
216 217 9.926158 AATATTTGCACAATCAAATACACTGAA 57.074 25.926 10.08 0.00 45.86 3.02
217 218 9.926158 ATATTTGCACAATCAAATACACTGAAA 57.074 25.926 10.08 0.00 45.86 2.69
218 219 7.462109 TTTGCACAATCAAATACACTGAAAC 57.538 32.000 0.00 0.00 31.64 2.78
219 220 5.211454 TGCACAATCAAATACACTGAAACG 58.789 37.500 0.00 0.00 0.00 3.60
220 221 5.008118 TGCACAATCAAATACACTGAAACGA 59.992 36.000 0.00 0.00 0.00 3.85
221 222 5.912396 GCACAATCAAATACACTGAAACGAA 59.088 36.000 0.00 0.00 0.00 3.85
222 223 6.086765 GCACAATCAAATACACTGAAACGAAG 59.913 38.462 0.00 0.00 0.00 3.79
223 224 6.086765 CACAATCAAATACACTGAAACGAAGC 59.913 38.462 0.00 0.00 0.00 3.86
224 225 4.742438 TCAAATACACTGAAACGAAGCC 57.258 40.909 0.00 0.00 0.00 4.35
225 226 4.385825 TCAAATACACTGAAACGAAGCCT 58.614 39.130 0.00 0.00 0.00 4.58
226 227 5.543714 TCAAATACACTGAAACGAAGCCTA 58.456 37.500 0.00 0.00 0.00 3.93
227 228 6.170506 TCAAATACACTGAAACGAAGCCTAT 58.829 36.000 0.00 0.00 0.00 2.57
228 229 6.653320 TCAAATACACTGAAACGAAGCCTATT 59.347 34.615 0.00 0.00 0.00 1.73
229 230 7.174253 TCAAATACACTGAAACGAAGCCTATTT 59.826 33.333 0.00 0.00 0.00 1.40
230 231 4.749245 ACACTGAAACGAAGCCTATTTG 57.251 40.909 0.00 0.00 0.00 2.32
231 232 4.385825 ACACTGAAACGAAGCCTATTTGA 58.614 39.130 0.00 0.00 0.00 2.69
232 233 4.819630 ACACTGAAACGAAGCCTATTTGAA 59.180 37.500 0.00 0.00 0.00 2.69
233 234 5.473504 ACACTGAAACGAAGCCTATTTGAAT 59.526 36.000 0.00 0.00 0.00 2.57
234 235 6.016276 ACACTGAAACGAAGCCTATTTGAATT 60.016 34.615 0.00 0.00 0.00 2.17
235 236 6.863126 CACTGAAACGAAGCCTATTTGAATTT 59.137 34.615 0.00 0.00 0.00 1.82
236 237 8.020819 CACTGAAACGAAGCCTATTTGAATTTA 58.979 33.333 0.00 0.00 0.00 1.40
237 238 8.021396 ACTGAAACGAAGCCTATTTGAATTTAC 58.979 33.333 0.00 0.00 0.00 2.01
238 239 7.877003 TGAAACGAAGCCTATTTGAATTTACA 58.123 30.769 0.00 0.00 0.00 2.41
239 240 8.519526 TGAAACGAAGCCTATTTGAATTTACAT 58.480 29.630 0.00 0.00 0.00 2.29
240 241 9.997482 GAAACGAAGCCTATTTGAATTTACATA 57.003 29.630 0.00 0.00 0.00 2.29
242 243 8.958119 ACGAAGCCTATTTGAATTTACATAGA 57.042 30.769 5.25 0.00 0.00 1.98
243 244 9.391006 ACGAAGCCTATTTGAATTTACATAGAA 57.609 29.630 5.25 0.00 0.00 2.10
253 254 9.540538 TTTGAATTTACATAGAAATTGAGGGGA 57.459 29.630 0.00 0.00 38.76 4.81
254 255 9.540538 TTGAATTTACATAGAAATTGAGGGGAA 57.459 29.630 0.00 0.00 38.76 3.97
255 256 9.713684 TGAATTTACATAGAAATTGAGGGGAAT 57.286 29.630 0.00 0.00 38.76 3.01
256 257 9.971922 GAATTTACATAGAAATTGAGGGGAATG 57.028 33.333 0.00 0.00 38.76 2.67
257 258 7.896383 TTTACATAGAAATTGAGGGGAATGG 57.104 36.000 0.00 0.00 0.00 3.16
258 259 5.732331 ACATAGAAATTGAGGGGAATGGA 57.268 39.130 0.00 0.00 0.00 3.41
259 260 6.285329 ACATAGAAATTGAGGGGAATGGAT 57.715 37.500 0.00 0.00 0.00 3.41
260 261 7.406620 ACATAGAAATTGAGGGGAATGGATA 57.593 36.000 0.00 0.00 0.00 2.59
261 262 7.465116 ACATAGAAATTGAGGGGAATGGATAG 58.535 38.462 0.00 0.00 0.00 2.08
262 263 7.295672 ACATAGAAATTGAGGGGAATGGATAGA 59.704 37.037 0.00 0.00 0.00 1.98
263 264 6.596869 AGAAATTGAGGGGAATGGATAGAA 57.403 37.500 0.00 0.00 0.00 2.10
264 265 6.985225 AGAAATTGAGGGGAATGGATAGAAA 58.015 36.000 0.00 0.00 0.00 2.52
265 266 7.421684 AGAAATTGAGGGGAATGGATAGAAAA 58.578 34.615 0.00 0.00 0.00 2.29
266 267 7.562821 AGAAATTGAGGGGAATGGATAGAAAAG 59.437 37.037 0.00 0.00 0.00 2.27
267 268 6.596869 ATTGAGGGGAATGGATAGAAAAGA 57.403 37.500 0.00 0.00 0.00 2.52
268 269 6.596869 TTGAGGGGAATGGATAGAAAAGAT 57.403 37.500 0.00 0.00 0.00 2.40
269 270 7.705912 TTGAGGGGAATGGATAGAAAAGATA 57.294 36.000 0.00 0.00 0.00 1.98
270 271 7.321717 TGAGGGGAATGGATAGAAAAGATAG 57.678 40.000 0.00 0.00 0.00 2.08
271 272 6.851836 TGAGGGGAATGGATAGAAAAGATAGT 59.148 38.462 0.00 0.00 0.00 2.12
272 273 7.084268 AGGGGAATGGATAGAAAAGATAGTG 57.916 40.000 0.00 0.00 0.00 2.74
273 274 5.707764 GGGGAATGGATAGAAAAGATAGTGC 59.292 44.000 0.00 0.00 0.00 4.40
274 275 6.466470 GGGGAATGGATAGAAAAGATAGTGCT 60.466 42.308 0.00 0.00 0.00 4.40
275 276 7.001073 GGGAATGGATAGAAAAGATAGTGCTT 58.999 38.462 0.00 0.00 0.00 3.91
276 277 7.174080 GGGAATGGATAGAAAAGATAGTGCTTC 59.826 40.741 0.00 0.00 0.00 3.86
277 278 7.174080 GGAATGGATAGAAAAGATAGTGCTTCC 59.826 40.741 0.00 0.00 0.00 3.46
278 279 6.814954 TGGATAGAAAAGATAGTGCTTCCT 57.185 37.500 0.00 0.00 0.00 3.36
279 280 6.821388 TGGATAGAAAAGATAGTGCTTCCTC 58.179 40.000 0.00 0.00 0.00 3.71
280 281 6.183361 TGGATAGAAAAGATAGTGCTTCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
281 282 4.130286 AGAAAAGATAGTGCTTCCTCCG 57.870 45.455 0.00 0.00 0.00 4.63
282 283 3.515901 AGAAAAGATAGTGCTTCCTCCGT 59.484 43.478 0.00 0.00 0.00 4.69
283 284 3.983044 AAAGATAGTGCTTCCTCCGTT 57.017 42.857 0.00 0.00 0.00 4.44
284 285 3.528597 AAGATAGTGCTTCCTCCGTTC 57.471 47.619 0.00 0.00 0.00 3.95
285 286 2.457598 AGATAGTGCTTCCTCCGTTCA 58.542 47.619 0.00 0.00 0.00 3.18
286 287 2.166664 AGATAGTGCTTCCTCCGTTCAC 59.833 50.000 0.00 0.00 0.00 3.18
287 288 1.334160 TAGTGCTTCCTCCGTTCACA 58.666 50.000 0.00 0.00 0.00 3.58
288 289 0.468226 AGTGCTTCCTCCGTTCACAA 59.532 50.000 0.00 0.00 0.00 3.33
289 290 1.134220 AGTGCTTCCTCCGTTCACAAA 60.134 47.619 0.00 0.00 0.00 2.83
290 291 1.880027 GTGCTTCCTCCGTTCACAAAT 59.120 47.619 0.00 0.00 0.00 2.32
291 292 3.071479 GTGCTTCCTCCGTTCACAAATA 58.929 45.455 0.00 0.00 0.00 1.40
292 293 3.071479 TGCTTCCTCCGTTCACAAATAC 58.929 45.455 0.00 0.00 0.00 1.89
293 294 3.071479 GCTTCCTCCGTTCACAAATACA 58.929 45.455 0.00 0.00 0.00 2.29
294 295 3.125316 GCTTCCTCCGTTCACAAATACAG 59.875 47.826 0.00 0.00 0.00 2.74
295 296 4.315803 CTTCCTCCGTTCACAAATACAGT 58.684 43.478 0.00 0.00 0.00 3.55
296 297 5.471556 TTCCTCCGTTCACAAATACAGTA 57.528 39.130 0.00 0.00 0.00 2.74
297 298 5.670792 TCCTCCGTTCACAAATACAGTAT 57.329 39.130 0.00 0.00 0.00 2.12
298 299 6.778834 TCCTCCGTTCACAAATACAGTATA 57.221 37.500 0.00 0.00 0.00 1.47
299 300 7.172868 TCCTCCGTTCACAAATACAGTATAA 57.827 36.000 0.00 0.00 0.00 0.98
300 301 7.262772 TCCTCCGTTCACAAATACAGTATAAG 58.737 38.462 0.00 0.00 0.00 1.73
301 302 7.123098 TCCTCCGTTCACAAATACAGTATAAGA 59.877 37.037 0.00 0.00 0.00 2.10
302 303 7.926555 CCTCCGTTCACAAATACAGTATAAGAT 59.073 37.037 0.00 0.00 0.00 2.40
303 304 9.314321 CTCCGTTCACAAATACAGTATAAGATT 57.686 33.333 0.00 0.00 0.00 2.40
304 305 9.661563 TCCGTTCACAAATACAGTATAAGATTT 57.338 29.630 0.00 0.00 0.00 2.17
324 325 8.045176 AGATTTTCTAACCTTTTTCTGGATCG 57.955 34.615 0.00 0.00 0.00 3.69
325 326 6.569179 TTTTCTAACCTTTTTCTGGATCGG 57.431 37.500 0.00 0.00 0.00 4.18
326 327 5.492855 TTCTAACCTTTTTCTGGATCGGA 57.507 39.130 0.00 0.00 0.00 4.55
327 328 5.693769 TCTAACCTTTTTCTGGATCGGAT 57.306 39.130 0.00 0.00 0.00 4.18
328 329 5.428253 TCTAACCTTTTTCTGGATCGGATG 58.572 41.667 0.00 0.00 0.00 3.51
329 330 3.721087 ACCTTTTTCTGGATCGGATGT 57.279 42.857 0.00 0.00 0.00 3.06
330 331 4.837093 ACCTTTTTCTGGATCGGATGTA 57.163 40.909 0.00 0.00 0.00 2.29
331 332 4.514401 ACCTTTTTCTGGATCGGATGTAC 58.486 43.478 0.00 0.00 0.00 2.90
332 333 4.225267 ACCTTTTTCTGGATCGGATGTACT 59.775 41.667 0.00 0.00 0.00 2.73
333 334 4.811557 CCTTTTTCTGGATCGGATGTACTC 59.188 45.833 0.00 0.00 0.00 2.59
334 335 4.402056 TTTTCTGGATCGGATGTACTCC 57.598 45.455 0.00 0.00 41.07 3.85
335 336 1.996798 TCTGGATCGGATGTACTCCC 58.003 55.000 0.00 0.00 41.49 4.30
336 337 1.499438 TCTGGATCGGATGTACTCCCT 59.501 52.381 0.00 0.00 41.49 4.20
337 338 1.889829 CTGGATCGGATGTACTCCCTC 59.110 57.143 0.00 0.00 41.49 4.30
338 339 1.258676 GGATCGGATGTACTCCCTCC 58.741 60.000 0.00 3.73 41.49 4.30
339 340 1.480683 GGATCGGATGTACTCCCTCCA 60.481 57.143 15.42 0.00 41.49 3.86
340 341 1.889829 GATCGGATGTACTCCCTCCAG 59.110 57.143 0.00 0.00 41.49 3.86
341 342 0.755698 TCGGATGTACTCCCTCCAGC 60.756 60.000 0.00 0.00 41.49 4.85
342 343 0.757188 CGGATGTACTCCCTCCAGCT 60.757 60.000 0.00 0.00 41.49 4.24
343 344 0.755686 GGATGTACTCCCTCCAGCTG 59.244 60.000 6.78 6.78 38.19 4.24
344 345 1.490574 GATGTACTCCCTCCAGCTGT 58.509 55.000 13.81 0.00 0.00 4.40
345 346 1.137872 GATGTACTCCCTCCAGCTGTG 59.862 57.143 13.81 4.33 0.00 3.66
346 347 0.114364 TGTACTCCCTCCAGCTGTGA 59.886 55.000 13.81 8.76 0.00 3.58
347 348 1.273267 TGTACTCCCTCCAGCTGTGAT 60.273 52.381 13.81 0.00 0.00 3.06
348 349 1.410882 GTACTCCCTCCAGCTGTGATC 59.589 57.143 13.81 0.00 0.00 2.92
349 350 0.042431 ACTCCCTCCAGCTGTGATCT 59.958 55.000 13.81 0.00 0.00 2.75
350 351 1.289231 ACTCCCTCCAGCTGTGATCTA 59.711 52.381 13.81 0.00 0.00 1.98
351 352 2.292521 ACTCCCTCCAGCTGTGATCTAA 60.293 50.000 13.81 0.00 0.00 2.10
352 353 2.768527 CTCCCTCCAGCTGTGATCTAAA 59.231 50.000 13.81 0.00 0.00 1.85
353 354 2.501723 TCCCTCCAGCTGTGATCTAAAC 59.498 50.000 13.81 0.00 0.00 2.01
354 355 2.544685 CCTCCAGCTGTGATCTAAACG 58.455 52.381 13.81 0.00 0.00 3.60
355 356 1.929836 CTCCAGCTGTGATCTAAACGC 59.070 52.381 13.81 0.00 0.00 4.84
356 357 1.550524 TCCAGCTGTGATCTAAACGCT 59.449 47.619 13.81 0.00 0.00 5.07
357 358 1.662629 CCAGCTGTGATCTAAACGCTG 59.337 52.381 13.81 15.21 41.03 5.18
358 359 1.662629 CAGCTGTGATCTAAACGCTGG 59.337 52.381 5.25 3.99 39.39 4.85
373 374 5.986004 AACGCTGGAGTATATGTTTTAGC 57.014 39.130 0.00 0.00 0.00 3.09
374 375 5.018539 ACGCTGGAGTATATGTTTTAGCA 57.981 39.130 0.00 0.00 0.00 3.49
398 399 5.765176 TGTTTGCTCATTCATTTGAGTCTG 58.235 37.500 3.65 0.00 44.10 3.51
527 528 2.656049 CATGGTTCCATGTGCACCA 58.344 52.632 20.05 2.97 44.75 4.17
529 530 0.968405 ATGGTTCCATGTGCACCAAC 59.032 50.000 15.69 11.39 43.85 3.77
530 531 0.396278 TGGTTCCATGTGCACCAACA 60.396 50.000 15.69 0.00 37.66 3.33
531 532 0.749649 GGTTCCATGTGCACCAACAA 59.250 50.000 15.69 0.00 32.81 2.83
532 533 1.269726 GGTTCCATGTGCACCAACAAG 60.270 52.381 15.69 0.00 32.81 3.16
536 537 3.760738 TCCATGTGCACCAACAAGAATA 58.239 40.909 15.69 0.00 32.81 1.75
545 546 7.013750 TGTGCACCAACAAGAATAGTAAATTCA 59.986 33.333 15.69 0.00 0.00 2.57
546 547 7.865385 GTGCACCAACAAGAATAGTAAATTCAA 59.135 33.333 5.22 0.00 0.00 2.69
547 548 8.417106 TGCACCAACAAGAATAGTAAATTCAAA 58.583 29.630 1.01 0.00 0.00 2.69
603 604 2.766313 TCTGGATGTCAAACTTGGTCG 58.234 47.619 0.00 0.00 0.00 4.79
609 610 2.489971 TGTCAAACTTGGTCGACCATC 58.510 47.619 36.52 19.66 46.97 3.51
610 611 1.804748 GTCAAACTTGGTCGACCATCC 59.195 52.381 36.52 15.63 46.97 3.51
614 615 1.933021 ACTTGGTCGACCATCCTACA 58.067 50.000 36.52 20.18 46.97 2.74
616 617 1.548719 CTTGGTCGACCATCCTACACA 59.451 52.381 36.52 18.69 46.97 3.72
617 618 0.892755 TGGTCGACCATCCTACACAC 59.107 55.000 33.23 3.01 42.01 3.82
630 631 6.183360 CCATCCTACACACGTAAGAAATTTCC 60.183 42.308 14.61 0.00 43.62 3.13
648 649 1.280133 TCCTGAAGGAATGACAGCAGG 59.720 52.381 0.00 0.00 42.18 4.85
654 655 4.263905 TGAAGGAATGACAGCAGGGTATTT 60.264 41.667 0.00 0.00 0.00 1.40
702 703 7.988028 AGACCTTACTATTCCTTCAAATAGTGC 59.012 37.037 15.92 4.54 46.72 4.40
707 708 7.631717 ACTATTCCTTCAAATAGTGCTTTCC 57.368 36.000 8.15 0.00 45.99 3.13
717 718 8.696043 TCAAATAGTGCTTTCCAATATAGCAT 57.304 30.769 0.65 0.00 45.61 3.79
782 783 9.076781 TCATTTCCTTGTGAAACTTCATATTCA 57.923 29.630 0.00 0.00 45.38 2.57
796 797 7.782049 ACTTCATATTCAAGTAGAATGGTCGA 58.218 34.615 0.85 0.00 46.24 4.20
882 887 5.221283 TGCTATTCATAATTGGTGCATGTGG 60.221 40.000 0.00 0.00 0.00 4.17
886 891 3.446873 TCATAATTGGTGCATGTGGAACC 59.553 43.478 0.00 0.00 34.36 3.62
887 892 1.714541 AATTGGTGCATGTGGAACCA 58.285 45.000 7.38 7.38 42.19 3.67
888 893 1.941377 ATTGGTGCATGTGGAACCAT 58.059 45.000 10.98 2.34 43.32 3.55
889 894 1.255882 TTGGTGCATGTGGAACCATC 58.744 50.000 10.98 0.00 43.32 3.51
890 895 0.405198 TGGTGCATGTGGAACCATCT 59.595 50.000 7.38 0.00 39.05 2.90
894 899 2.357009 GTGCATGTGGAACCATCTCATC 59.643 50.000 0.00 0.00 34.36 2.92
920 925 0.482446 AAATTCCTGTCCCACTGGCA 59.518 50.000 0.00 0.00 37.16 4.92
922 927 0.842030 ATTCCTGTCCCACTGGCAGA 60.842 55.000 23.66 0.00 37.74 4.26
930 935 3.153919 GTCCCACTGGCAGACATTTTTA 58.846 45.455 23.66 0.00 0.00 1.52
931 936 3.572255 GTCCCACTGGCAGACATTTTTAA 59.428 43.478 23.66 0.00 0.00 1.52
934 939 4.990426 CCCACTGGCAGACATTTTTAAAAG 59.010 41.667 23.66 0.00 0.00 2.27
935 940 5.221422 CCCACTGGCAGACATTTTTAAAAGA 60.221 40.000 23.66 0.00 0.00 2.52
958 963 4.796110 AAAATCAGGCTGGCTTATCCTA 57.204 40.909 15.73 0.00 35.26 2.94
959 964 3.778954 AATCAGGCTGGCTTATCCTAC 57.221 47.619 15.73 0.00 35.26 3.18
1652 1728 3.482783 GCAGTCGCTCTTCCGCAC 61.483 66.667 0.00 0.00 34.30 5.34
1656 1732 4.717629 TCGCTCTTCCGCACCACG 62.718 66.667 0.00 0.00 43.15 4.94
1778 1854 4.838152 CGACATGGTGGCCCTCGG 62.838 72.222 0.00 0.00 0.00 4.63
2071 2147 4.140599 AGGCGCTCCAGCTCTTCG 62.141 66.667 7.64 0.00 39.32 3.79
2334 2410 1.078426 GAACACCCTCATCACCGGG 60.078 63.158 6.32 0.00 46.26 5.73
2361 2437 2.805353 CAAGGTCACGTCGCCGAG 60.805 66.667 0.00 0.00 37.88 4.63
2377 2453 3.282745 GAGGCGTTCCAGCTCGTCA 62.283 63.158 0.00 0.00 37.29 4.35
2392 2468 2.125391 TCACGGAGATGCAGCTGC 60.125 61.111 31.89 31.89 42.50 5.25
2393 2469 3.200593 CACGGAGATGCAGCTGCC 61.201 66.667 34.64 20.80 41.18 4.85
2394 2470 3.709633 ACGGAGATGCAGCTGCCA 61.710 61.111 34.64 22.77 41.18 4.92
2403 2479 1.164041 TGCAGCTGCCATCATCATCG 61.164 55.000 34.64 0.00 41.18 3.84
2409 2485 2.074576 CTGCCATCATCATCGTCATCC 58.925 52.381 0.00 0.00 0.00 3.51
2411 2487 1.802960 GCCATCATCATCGTCATCCAC 59.197 52.381 0.00 0.00 0.00 4.02
2424 2500 2.034878 TCATCCACGGAAGATGAGAGG 58.965 52.381 9.42 0.00 43.96 3.69
2425 2501 1.759445 CATCCACGGAAGATGAGAGGT 59.241 52.381 5.87 0.00 43.15 3.85
2426 2502 1.186200 TCCACGGAAGATGAGAGGTG 58.814 55.000 0.00 0.00 0.00 4.00
2433 2512 0.463295 AAGATGAGAGGTGCATGCCG 60.463 55.000 16.68 0.00 0.00 5.69
2457 2536 4.099403 ATCACGCTGATGACGCTG 57.901 55.556 0.56 0.00 35.43 5.18
2932 3011 3.008835 ACAACATCATCACCTCCATGG 57.991 47.619 4.97 4.97 42.93 3.66
2955 3034 2.280797 GGCGAGCACCAAGTGTCA 60.281 61.111 0.00 0.00 35.75 3.58
3051 3130 3.760035 GAGCTGGAGCCCGACGAA 61.760 66.667 0.00 0.00 43.38 3.85
3178 3261 2.202987 GGTGCAGCTGGATCGAGG 60.203 66.667 17.12 0.00 0.00 4.63
3207 3290 2.124736 ATCCACCGGTTCATGGCG 60.125 61.111 2.97 0.00 35.81 5.69
3471 3560 1.033746 ATGAGGCGGCCAAGTTCATG 61.034 55.000 23.09 0.00 0.00 3.07
3474 3563 2.700773 GGCGGCCAAGTTCATGTCC 61.701 63.158 15.62 0.00 0.00 4.02
3534 3623 0.963856 GGTTCCACCATTTCCGGGAC 60.964 60.000 0.00 0.00 38.42 4.46
3558 3647 0.179000 CCTGCTCATGTGGGGACTAC 59.821 60.000 0.00 0.00 0.00 2.73
3571 3660 2.496470 GGGGACTACTGGTAGAACACAG 59.504 54.545 13.83 0.00 40.48 3.66
3572 3661 2.094130 GGGACTACTGGTAGAACACAGC 60.094 54.545 13.83 0.00 38.25 4.40
3574 3663 3.006537 GGACTACTGGTAGAACACAGCAA 59.993 47.826 13.83 0.00 38.25 3.91
3576 3665 1.865865 ACTGGTAGAACACAGCAACG 58.134 50.000 0.00 0.00 38.25 4.10
3610 3700 3.609853 TCACACCATAGAAACAGCATCC 58.390 45.455 0.00 0.00 0.00 3.51
3613 3703 3.009473 ACACCATAGAAACAGCATCCACT 59.991 43.478 0.00 0.00 0.00 4.00
3634 3724 6.201425 CCACTTTGACAAAATCACAGGAAATG 59.799 38.462 1.62 0.00 39.14 2.32
3638 3728 5.841810 TGACAAAATCACAGGAAATGTTCC 58.158 37.500 0.00 0.00 41.41 3.62
3641 3731 7.898021 TGACAAAATCACAGGAAATGTTCCTTG 60.898 37.037 6.81 9.10 44.95 3.61
3654 3744 6.446781 AATGTTCCTTGCTCACAATATCAG 57.553 37.500 0.00 0.00 34.61 2.90
3655 3745 3.691118 TGTTCCTTGCTCACAATATCAGC 59.309 43.478 0.00 0.00 34.61 4.26
3656 3746 3.632643 TCCTTGCTCACAATATCAGCA 57.367 42.857 0.00 0.00 41.45 4.41
3658 3748 3.691118 TCCTTGCTCACAATATCAGCAAC 59.309 43.478 1.48 0.00 45.91 4.17
3669 3764 8.650490 TCACAATATCAGCAACTATCTGGATTA 58.350 33.333 0.00 0.00 32.63 1.75
3670 3765 8.715998 CACAATATCAGCAACTATCTGGATTAC 58.284 37.037 0.00 0.00 32.63 1.89
3689 3784 9.832445 TGGATTACTTATGAAGTGAAATACTCC 57.168 33.333 2.09 0.00 42.84 3.85
3690 3785 9.274206 GGATTACTTATGAAGTGAAATACTCCC 57.726 37.037 2.09 0.00 42.84 4.30
3693 3788 9.667107 TTACTTATGAAGTGAAATACTCCCTTG 57.333 33.333 2.09 0.00 42.84 3.61
3695 3790 7.824779 ACTTATGAAGTGAAATACTCCCTTGTC 59.175 37.037 0.00 0.00 41.01 3.18
3696 3791 5.825593 TGAAGTGAAATACTCCCTTGTCT 57.174 39.130 0.00 0.00 39.18 3.41
3697 3792 5.794894 TGAAGTGAAATACTCCCTTGTCTC 58.205 41.667 0.00 0.00 39.18 3.36
3698 3793 5.306937 TGAAGTGAAATACTCCCTTGTCTCA 59.693 40.000 0.00 0.00 39.18 3.27
3700 3795 6.187727 AGTGAAATACTCCCTTGTCTCAAA 57.812 37.500 0.00 0.00 33.17 2.69
3701 3796 6.601332 AGTGAAATACTCCCTTGTCTCAAAA 58.399 36.000 0.00 0.00 33.17 2.44
3702 3797 7.234355 AGTGAAATACTCCCTTGTCTCAAAAT 58.766 34.615 0.00 0.00 33.17 1.82
3703 3798 7.175641 AGTGAAATACTCCCTTGTCTCAAAATG 59.824 37.037 0.00 0.00 33.17 2.32
3704 3799 7.004086 TGAAATACTCCCTTGTCTCAAAATGT 58.996 34.615 0.00 0.00 0.00 2.71
3705 3800 8.160765 TGAAATACTCCCTTGTCTCAAAATGTA 58.839 33.333 0.00 0.00 0.00 2.29
3706 3801 8.934023 AAATACTCCCTTGTCTCAAAATGTAA 57.066 30.769 0.00 0.00 0.00 2.41
3707 3802 8.567285 AATACTCCCTTGTCTCAAAATGTAAG 57.433 34.615 0.00 0.00 0.00 2.34
3708 3803 6.187727 ACTCCCTTGTCTCAAAATGTAAGA 57.812 37.500 0.00 0.00 0.00 2.10
3709 3804 5.998363 ACTCCCTTGTCTCAAAATGTAAGAC 59.002 40.000 0.00 0.00 39.87 3.01
3710 3805 5.935945 TCCCTTGTCTCAAAATGTAAGACA 58.064 37.500 0.53 0.53 45.64 3.41
3733 3828 4.247380 GGGGGATGAGCTCGGCAG 62.247 72.222 9.64 0.00 0.00 4.85
3738 4089 1.406887 GGGATGAGCTCGGCAGTAAAA 60.407 52.381 9.64 0.00 0.00 1.52
3743 4094 2.290008 TGAGCTCGGCAGTAAAATTGGA 60.290 45.455 9.64 0.00 0.00 3.53
3744 4095 2.747446 GAGCTCGGCAGTAAAATTGGAA 59.253 45.455 0.00 0.00 0.00 3.53
3792 4143 9.811995 GGTAAACTTCAACAAATTTTAGAACCT 57.188 29.630 0.00 0.00 0.00 3.50
3795 4146 9.719355 AAACTTCAACAAATTTTAGAACCTTGT 57.281 25.926 0.00 0.00 0.00 3.16
3796 4147 9.719355 AACTTCAACAAATTTTAGAACCTTGTT 57.281 25.926 0.00 3.46 40.01 2.83
3797 4148 9.719355 ACTTCAACAAATTTTAGAACCTTGTTT 57.281 25.926 5.68 0.00 37.95 2.83
3886 4329 6.723131 GACAGGTCCAACTTCTTATAACAC 57.277 41.667 0.00 0.00 0.00 3.32
3985 4428 0.103572 GAAACCGCCTCGCTACCATA 59.896 55.000 0.00 0.00 0.00 2.74
3999 4442 5.764686 TCGCTACCATAAACCGAGATAACTA 59.235 40.000 0.00 0.00 0.00 2.24
4060 4503 1.670949 GAGCGCTGGACAGGAGATCA 61.671 60.000 18.48 0.00 0.00 2.92
4065 4508 1.193323 CTGGACAGGAGATCAGCTGT 58.807 55.000 14.67 0.42 0.00 4.40
4067 4510 1.189752 GGACAGGAGATCAGCTGTGA 58.810 55.000 14.67 0.00 37.02 3.58
4075 4518 5.821470 CAGGAGATCAGCTGTGATTTTACAT 59.179 40.000 14.67 0.00 43.92 2.29
4079 4522 8.341173 GGAGATCAGCTGTGATTTTACATAAAG 58.659 37.037 14.67 0.00 43.92 1.85
4081 4524 9.624373 AGATCAGCTGTGATTTTACATAAAGAT 57.376 29.630 14.67 0.00 43.92 2.40
4107 4551 4.066646 TCAAACGACAGGAAACAGATGA 57.933 40.909 0.00 0.00 0.00 2.92
4141 4585 5.280499 TGAAGGACTGGATAATCTTCCTCA 58.720 41.667 0.00 0.00 35.55 3.86
4160 4604 7.730364 TCCTCACAAAAAGAACTGAATACTC 57.270 36.000 0.00 0.00 0.00 2.59
4161 4605 7.279615 TCCTCACAAAAAGAACTGAATACTCA 58.720 34.615 0.00 0.00 0.00 3.41
4163 4607 8.571336 CCTCACAAAAAGAACTGAATACTCAAT 58.429 33.333 0.00 0.00 0.00 2.57
4187 4631 7.686438 TGCTTATAAGAAGATTTCTGCAACA 57.314 32.000 16.85 0.00 40.59 3.33
4340 5002 9.927081 ATTCAAATGGTAGATCCTAATGAAAGT 57.073 29.630 0.00 0.00 36.21 2.66
4353 5015 2.408271 TGAAAGTATCTGCCAGCAGG 57.592 50.000 19.04 0.00 43.75 4.85
4356 5018 1.577736 AAGTATCTGCCAGCAGGACT 58.422 50.000 19.04 18.02 43.75 3.85
4362 5024 1.552337 TCTGCCAGCAGGACTAAGAAG 59.448 52.381 19.04 0.00 43.75 2.85
4415 5078 5.276461 TGTGAGTGCATTACCTTCGATAT 57.724 39.130 0.00 0.00 0.00 1.63
4466 5129 4.202398 CCATATGCACCATACTGAGGACTT 60.202 45.833 0.00 0.00 0.00 3.01
4475 5138 1.079543 CTGAGGACTTGCTGGACGG 60.080 63.158 0.00 0.00 0.00 4.79
4517 5180 1.483415 GACCTTCGGTACATTGGGCTA 59.517 52.381 0.00 0.00 35.25 3.93
4545 5208 2.288457 CGGCGATATGAACTGTCATCCT 60.288 50.000 0.00 0.00 43.69 3.24
4562 5225 1.609239 CTGCCTTCCATAGCCACCA 59.391 57.895 0.00 0.00 0.00 4.17
4563 5226 0.749454 CTGCCTTCCATAGCCACCAC 60.749 60.000 0.00 0.00 0.00 4.16
4564 5227 1.453928 GCCTTCCATAGCCACCACC 60.454 63.158 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.014128 GTTGTCCGACACCATAATGGG 58.986 52.381 0.00 0.00 43.37 4.00
8 9 2.705730 TGTTGTCCGACACCATAATGG 58.294 47.619 0.00 0.00 45.02 3.16
9 10 4.454161 TCTTTGTTGTCCGACACCATAATG 59.546 41.667 0.00 0.00 0.00 1.90
10 11 4.647611 TCTTTGTTGTCCGACACCATAAT 58.352 39.130 0.00 0.00 0.00 1.28
11 12 4.062293 CTCTTTGTTGTCCGACACCATAA 58.938 43.478 0.00 0.00 0.00 1.90
12 13 3.070446 ACTCTTTGTTGTCCGACACCATA 59.930 43.478 0.00 0.00 0.00 2.74
13 14 2.158813 ACTCTTTGTTGTCCGACACCAT 60.159 45.455 0.00 0.00 0.00 3.55
14 15 1.208535 ACTCTTTGTTGTCCGACACCA 59.791 47.619 0.00 0.00 0.00 4.17
15 16 1.865340 GACTCTTTGTTGTCCGACACC 59.135 52.381 0.00 0.00 0.00 4.16
16 17 1.521423 CGACTCTTTGTTGTCCGACAC 59.479 52.381 0.00 0.00 0.00 3.67
17 18 1.537348 CCGACTCTTTGTTGTCCGACA 60.537 52.381 0.00 0.00 0.00 4.35
18 19 1.137513 CCGACTCTTTGTTGTCCGAC 58.862 55.000 0.00 0.00 0.00 4.79
19 20 1.034356 TCCGACTCTTTGTTGTCCGA 58.966 50.000 0.00 0.00 0.00 4.55
20 21 1.726791 CATCCGACTCTTTGTTGTCCG 59.273 52.381 0.00 0.00 0.00 4.79
21 22 1.464997 GCATCCGACTCTTTGTTGTCC 59.535 52.381 0.00 0.00 0.00 4.02
22 23 2.143122 TGCATCCGACTCTTTGTTGTC 58.857 47.619 0.00 0.00 0.00 3.18
23 24 2.254546 TGCATCCGACTCTTTGTTGT 57.745 45.000 0.00 0.00 0.00 3.32
24 25 3.495193 CATTGCATCCGACTCTTTGTTG 58.505 45.455 0.00 0.00 0.00 3.33
25 26 2.095059 GCATTGCATCCGACTCTTTGTT 60.095 45.455 3.15 0.00 0.00 2.83
26 27 1.470098 GCATTGCATCCGACTCTTTGT 59.530 47.619 3.15 0.00 0.00 2.83
27 28 1.202222 GGCATTGCATCCGACTCTTTG 60.202 52.381 11.39 0.00 0.00 2.77
28 29 1.098050 GGCATTGCATCCGACTCTTT 58.902 50.000 11.39 0.00 0.00 2.52
29 30 0.254178 AGGCATTGCATCCGACTCTT 59.746 50.000 11.39 0.00 0.00 2.85
30 31 0.179062 GAGGCATTGCATCCGACTCT 60.179 55.000 12.13 0.00 32.93 3.24
31 32 0.462581 TGAGGCATTGCATCCGACTC 60.463 55.000 19.55 11.24 38.67 3.36
32 33 0.745845 GTGAGGCATTGCATCCGACT 60.746 55.000 19.55 1.75 38.67 4.18
33 34 0.745845 AGTGAGGCATTGCATCCGAC 60.746 55.000 19.55 12.32 38.67 4.79
34 35 0.462581 GAGTGAGGCATTGCATCCGA 60.463 55.000 19.55 0.00 38.67 4.55
35 36 0.463295 AGAGTGAGGCATTGCATCCG 60.463 55.000 19.55 0.00 38.67 4.18
36 37 1.022735 CAGAGTGAGGCATTGCATCC 58.977 55.000 19.55 11.34 38.67 3.51
37 38 1.669779 GTCAGAGTGAGGCATTGCATC 59.330 52.381 16.00 16.00 39.95 3.91
38 39 1.281287 AGTCAGAGTGAGGCATTGCAT 59.719 47.619 11.39 2.39 0.00 3.96
39 40 0.689055 AGTCAGAGTGAGGCATTGCA 59.311 50.000 11.39 0.00 0.00 4.08
40 41 1.367659 GAGTCAGAGTGAGGCATTGC 58.632 55.000 0.00 0.00 0.00 3.56
41 42 1.406614 GGGAGTCAGAGTGAGGCATTG 60.407 57.143 0.00 0.00 0.00 2.82
42 43 0.908198 GGGAGTCAGAGTGAGGCATT 59.092 55.000 0.00 0.00 0.00 3.56
43 44 0.042431 AGGGAGTCAGAGTGAGGCAT 59.958 55.000 0.00 0.00 0.00 4.40
44 45 0.902048 CAGGGAGTCAGAGTGAGGCA 60.902 60.000 0.00 0.00 0.00 4.75
45 46 1.896694 CAGGGAGTCAGAGTGAGGC 59.103 63.158 0.00 0.00 0.00 4.70
46 47 1.896694 GCAGGGAGTCAGAGTGAGG 59.103 63.158 0.00 0.00 0.00 3.86
47 48 1.247419 ACGCAGGGAGTCAGAGTGAG 61.247 60.000 0.00 0.00 0.00 3.51
48 49 0.827925 AACGCAGGGAGTCAGAGTGA 60.828 55.000 0.00 0.00 0.00 3.41
49 50 0.668706 CAACGCAGGGAGTCAGAGTG 60.669 60.000 0.00 0.00 0.00 3.51
50 51 0.827925 TCAACGCAGGGAGTCAGAGT 60.828 55.000 0.00 0.00 0.00 3.24
51 52 0.389166 GTCAACGCAGGGAGTCAGAG 60.389 60.000 0.00 0.00 0.00 3.35
52 53 1.112916 TGTCAACGCAGGGAGTCAGA 61.113 55.000 0.00 0.00 0.00 3.27
53 54 0.036952 ATGTCAACGCAGGGAGTCAG 60.037 55.000 0.00 0.00 0.00 3.51
54 55 0.037326 GATGTCAACGCAGGGAGTCA 60.037 55.000 0.00 0.00 0.00 3.41
55 56 0.741221 GGATGTCAACGCAGGGAGTC 60.741 60.000 0.00 0.00 0.00 3.36
56 57 1.296715 GGATGTCAACGCAGGGAGT 59.703 57.895 0.00 0.00 0.00 3.85
57 58 1.450312 GGGATGTCAACGCAGGGAG 60.450 63.158 0.00 0.00 0.00 4.30
58 59 1.899437 GAGGGATGTCAACGCAGGGA 61.899 60.000 0.04 0.00 0.00 4.20
59 60 1.450312 GAGGGATGTCAACGCAGGG 60.450 63.158 0.04 0.00 0.00 4.45
60 61 0.824109 TAGAGGGATGTCAACGCAGG 59.176 55.000 0.04 0.00 0.00 4.85
61 62 1.478510 ACTAGAGGGATGTCAACGCAG 59.521 52.381 0.00 0.00 0.00 5.18
62 63 1.204704 CACTAGAGGGATGTCAACGCA 59.795 52.381 0.00 0.00 0.00 5.24
63 64 1.471676 CCACTAGAGGGATGTCAACGC 60.472 57.143 0.00 0.00 0.00 4.84
64 65 1.825474 ACCACTAGAGGGATGTCAACG 59.175 52.381 11.20 0.00 0.00 4.10
65 66 2.159226 CGACCACTAGAGGGATGTCAAC 60.159 54.545 11.20 0.00 0.00 3.18
66 67 2.100197 CGACCACTAGAGGGATGTCAA 58.900 52.381 11.20 0.00 0.00 3.18
67 68 1.763968 CGACCACTAGAGGGATGTCA 58.236 55.000 11.20 0.00 0.00 3.58
68 69 0.386113 GCGACCACTAGAGGGATGTC 59.614 60.000 11.20 0.00 0.00 3.06
69 70 0.324368 TGCGACCACTAGAGGGATGT 60.324 55.000 11.20 0.00 0.00 3.06
70 71 1.043816 ATGCGACCACTAGAGGGATG 58.956 55.000 11.20 1.13 0.00 3.51
71 72 1.043816 CATGCGACCACTAGAGGGAT 58.956 55.000 11.20 0.00 0.00 3.85
72 73 1.676678 GCATGCGACCACTAGAGGGA 61.677 60.000 11.20 0.00 0.00 4.20
73 74 1.227380 GCATGCGACCACTAGAGGG 60.227 63.158 11.20 7.36 0.00 4.30
74 75 0.176680 AAGCATGCGACCACTAGAGG 59.823 55.000 13.01 4.44 0.00 3.69
75 76 1.565305 GAAGCATGCGACCACTAGAG 58.435 55.000 13.01 0.00 0.00 2.43
76 77 0.179137 CGAAGCATGCGACCACTAGA 60.179 55.000 13.01 0.00 42.52 2.43
77 78 1.148157 CCGAAGCATGCGACCACTAG 61.148 60.000 13.01 0.00 42.52 2.57
78 79 1.153647 CCGAAGCATGCGACCACTA 60.154 57.895 13.01 0.00 42.52 2.74
79 80 2.434884 CCGAAGCATGCGACCACT 60.435 61.111 13.01 0.00 42.52 4.00
80 81 4.166011 GCCGAAGCATGCGACCAC 62.166 66.667 13.01 0.00 42.52 4.16
86 87 2.082366 CAACAACGCCGAAGCATGC 61.082 57.895 10.51 10.51 39.83 4.06
87 88 0.725784 GTCAACAACGCCGAAGCATG 60.726 55.000 0.00 0.00 39.83 4.06
88 89 1.574428 GTCAACAACGCCGAAGCAT 59.426 52.632 0.00 0.00 39.83 3.79
89 90 2.539338 GGTCAACAACGCCGAAGCA 61.539 57.895 0.00 0.00 39.83 3.91
90 91 0.947180 TAGGTCAACAACGCCGAAGC 60.947 55.000 0.00 0.00 0.00 3.86
91 92 0.788391 GTAGGTCAACAACGCCGAAG 59.212 55.000 0.00 0.00 0.00 3.79
92 93 0.104487 TGTAGGTCAACAACGCCGAA 59.896 50.000 0.00 0.00 0.00 4.30
93 94 0.319083 ATGTAGGTCAACAACGCCGA 59.681 50.000 0.00 0.00 32.02 5.54
94 95 0.442310 CATGTAGGTCAACAACGCCG 59.558 55.000 0.00 0.00 32.02 6.46
95 96 1.732259 CTCATGTAGGTCAACAACGCC 59.268 52.381 0.00 0.00 32.02 5.68
96 97 1.732259 CCTCATGTAGGTCAACAACGC 59.268 52.381 0.00 0.00 40.94 4.84
107 108 3.255888 TGACTAATAGGCGCCTCATGTAG 59.744 47.826 36.73 28.16 0.00 2.74
108 109 3.227614 TGACTAATAGGCGCCTCATGTA 58.772 45.455 36.73 16.80 0.00 2.29
109 110 2.039418 TGACTAATAGGCGCCTCATGT 58.961 47.619 36.73 26.14 0.00 3.21
110 111 2.820059 TGACTAATAGGCGCCTCATG 57.180 50.000 36.73 23.05 0.00 3.07
111 112 4.357918 AATTGACTAATAGGCGCCTCAT 57.642 40.909 36.73 25.21 0.00 2.90
112 113 3.838244 AATTGACTAATAGGCGCCTCA 57.162 42.857 36.73 21.66 0.00 3.86
113 114 5.120830 CACATAATTGACTAATAGGCGCCTC 59.879 44.000 36.73 18.90 0.00 4.70
114 115 4.997395 CACATAATTGACTAATAGGCGCCT 59.003 41.667 34.85 34.85 0.00 5.52
115 116 4.154195 CCACATAATTGACTAATAGGCGCC 59.846 45.833 21.89 21.89 0.00 6.53
116 117 4.378459 GCCACATAATTGACTAATAGGCGC 60.378 45.833 0.00 0.00 0.00 6.53
117 118 4.754618 TGCCACATAATTGACTAATAGGCG 59.245 41.667 0.00 0.00 41.13 5.52
118 119 6.430925 TCATGCCACATAATTGACTAATAGGC 59.569 38.462 0.00 0.00 38.82 3.93
119 120 7.445096 TGTCATGCCACATAATTGACTAATAGG 59.555 37.037 0.00 0.00 38.00 2.57
120 121 8.382030 TGTCATGCCACATAATTGACTAATAG 57.618 34.615 0.00 0.00 38.00 1.73
121 122 8.922931 ATGTCATGCCACATAATTGACTAATA 57.077 30.769 0.00 0.00 38.00 0.98
122 123 7.828508 ATGTCATGCCACATAATTGACTAAT 57.171 32.000 0.00 0.00 38.00 1.73
123 124 7.338957 TGAATGTCATGCCACATAATTGACTAA 59.661 33.333 0.80 0.00 35.87 2.24
124 125 6.827762 TGAATGTCATGCCACATAATTGACTA 59.172 34.615 0.80 0.00 35.87 2.59
125 126 5.653330 TGAATGTCATGCCACATAATTGACT 59.347 36.000 0.80 0.00 35.87 3.41
126 127 5.745294 GTGAATGTCATGCCACATAATTGAC 59.255 40.000 11.60 0.00 35.87 3.18
127 128 5.163530 GGTGAATGTCATGCCACATAATTGA 60.164 40.000 16.04 0.00 35.87 2.57
128 129 5.045215 GGTGAATGTCATGCCACATAATTG 58.955 41.667 16.04 0.00 35.87 2.32
129 130 4.710865 TGGTGAATGTCATGCCACATAATT 59.289 37.500 16.04 0.00 35.87 1.40
130 131 4.279982 TGGTGAATGTCATGCCACATAAT 58.720 39.130 16.04 0.00 35.87 1.28
131 132 3.694926 TGGTGAATGTCATGCCACATAA 58.305 40.909 16.04 3.78 35.87 1.90
132 133 3.362870 TGGTGAATGTCATGCCACATA 57.637 42.857 16.04 6.09 35.87 2.29
133 134 2.219080 TGGTGAATGTCATGCCACAT 57.781 45.000 16.04 0.00 38.74 3.21
134 135 2.219080 ATGGTGAATGTCATGCCACA 57.781 45.000 16.04 4.55 27.19 4.17
135 136 4.158394 ACTTTATGGTGAATGTCATGCCAC 59.842 41.667 9.11 9.11 27.19 5.01
136 137 4.158209 CACTTTATGGTGAATGTCATGCCA 59.842 41.667 6.52 6.52 39.34 4.92
137 138 4.398988 TCACTTTATGGTGAATGTCATGCC 59.601 41.667 0.00 0.00 42.35 4.40
138 139 5.565592 TCACTTTATGGTGAATGTCATGC 57.434 39.130 0.00 0.00 42.35 4.06
145 146 8.548877 AGGTACTAACATCACTTTATGGTGAAT 58.451 33.333 1.46 0.00 43.17 2.57
146 147 7.913789 AGGTACTAACATCACTTTATGGTGAA 58.086 34.615 1.46 0.00 43.17 3.18
147 148 7.490657 AGGTACTAACATCACTTTATGGTGA 57.509 36.000 0.00 0.00 43.75 4.02
148 149 9.832445 ATAAGGTACTAACATCACTTTATGGTG 57.168 33.333 0.00 0.00 42.01 4.17
156 157 8.643324 GGAATCAGATAAGGTACTAACATCACT 58.357 37.037 0.00 0.00 38.49 3.41
157 158 8.421784 TGGAATCAGATAAGGTACTAACATCAC 58.578 37.037 0.00 0.00 38.49 3.06
158 159 8.547481 TGGAATCAGATAAGGTACTAACATCA 57.453 34.615 0.00 0.00 38.49 3.07
159 160 9.262358 GTTGGAATCAGATAAGGTACTAACATC 57.738 37.037 0.00 0.00 38.49 3.06
160 161 8.211629 GGTTGGAATCAGATAAGGTACTAACAT 58.788 37.037 0.00 0.00 38.49 2.71
161 162 7.181305 TGGTTGGAATCAGATAAGGTACTAACA 59.819 37.037 0.00 0.00 38.49 2.41
162 163 7.562135 TGGTTGGAATCAGATAAGGTACTAAC 58.438 38.462 0.00 0.00 38.49 2.34
163 164 7.635089 GCTGGTTGGAATCAGATAAGGTACTAA 60.635 40.741 3.74 0.00 33.02 2.24
164 165 6.183360 GCTGGTTGGAATCAGATAAGGTACTA 60.183 42.308 3.74 0.00 33.02 1.82
165 166 5.396884 GCTGGTTGGAATCAGATAAGGTACT 60.397 44.000 3.74 0.00 34.36 2.73
166 167 4.816925 GCTGGTTGGAATCAGATAAGGTAC 59.183 45.833 3.74 0.00 33.11 3.34
167 168 4.473196 TGCTGGTTGGAATCAGATAAGGTA 59.527 41.667 3.74 0.00 33.11 3.08
168 169 3.266772 TGCTGGTTGGAATCAGATAAGGT 59.733 43.478 3.74 0.00 33.11 3.50
169 170 3.889815 TGCTGGTTGGAATCAGATAAGG 58.110 45.455 3.74 0.00 33.11 2.69
170 171 7.756395 ATATTGCTGGTTGGAATCAGATAAG 57.244 36.000 3.74 0.00 37.82 1.73
171 172 8.415553 CAAATATTGCTGGTTGGAATCAGATAA 58.584 33.333 3.74 0.00 37.82 1.75
172 173 7.944061 CAAATATTGCTGGTTGGAATCAGATA 58.056 34.615 3.74 0.00 37.82 1.98
173 174 6.812998 CAAATATTGCTGGTTGGAATCAGAT 58.187 36.000 3.74 0.00 37.82 2.90
174 175 6.211587 CAAATATTGCTGGTTGGAATCAGA 57.788 37.500 3.74 0.00 37.82 3.27
189 190 9.356433 TCAGTGTATTTGATTGTGCAAATATTG 57.644 29.630 11.33 10.46 46.43 1.90
190 191 9.926158 TTCAGTGTATTTGATTGTGCAAATATT 57.074 25.926 11.33 0.00 46.43 1.28
191 192 9.926158 TTTCAGTGTATTTGATTGTGCAAATAT 57.074 25.926 11.33 0.00 46.43 1.28
192 193 9.190858 GTTTCAGTGTATTTGATTGTGCAAATA 57.809 29.630 0.00 0.00 44.29 1.40
193 194 7.096106 CGTTTCAGTGTATTTGATTGTGCAAAT 60.096 33.333 0.00 0.00 46.79 2.32
194 195 6.198029 CGTTTCAGTGTATTTGATTGTGCAAA 59.802 34.615 0.00 0.00 41.49 3.68
195 196 5.685068 CGTTTCAGTGTATTTGATTGTGCAA 59.315 36.000 0.00 0.00 0.00 4.08
196 197 5.008118 TCGTTTCAGTGTATTTGATTGTGCA 59.992 36.000 0.00 0.00 0.00 4.57
197 198 5.448438 TCGTTTCAGTGTATTTGATTGTGC 58.552 37.500 0.00 0.00 0.00 4.57
198 199 6.086765 GCTTCGTTTCAGTGTATTTGATTGTG 59.913 38.462 0.00 0.00 0.00 3.33
199 200 6.142817 GCTTCGTTTCAGTGTATTTGATTGT 58.857 36.000 0.00 0.00 0.00 2.71
200 201 5.569059 GGCTTCGTTTCAGTGTATTTGATTG 59.431 40.000 0.00 0.00 0.00 2.67
201 202 5.473504 AGGCTTCGTTTCAGTGTATTTGATT 59.526 36.000 0.00 0.00 0.00 2.57
202 203 5.003804 AGGCTTCGTTTCAGTGTATTTGAT 58.996 37.500 0.00 0.00 0.00 2.57
203 204 4.385825 AGGCTTCGTTTCAGTGTATTTGA 58.614 39.130 0.00 0.00 0.00 2.69
204 205 4.749245 AGGCTTCGTTTCAGTGTATTTG 57.251 40.909 0.00 0.00 0.00 2.32
205 206 7.174253 TCAAATAGGCTTCGTTTCAGTGTATTT 59.826 33.333 0.00 0.00 0.00 1.40
206 207 6.653320 TCAAATAGGCTTCGTTTCAGTGTATT 59.347 34.615 0.00 0.00 0.00 1.89
207 208 6.170506 TCAAATAGGCTTCGTTTCAGTGTAT 58.829 36.000 0.00 0.00 0.00 2.29
208 209 5.543714 TCAAATAGGCTTCGTTTCAGTGTA 58.456 37.500 0.00 0.00 0.00 2.90
209 210 4.385825 TCAAATAGGCTTCGTTTCAGTGT 58.614 39.130 0.00 0.00 0.00 3.55
210 211 5.356882 TTCAAATAGGCTTCGTTTCAGTG 57.643 39.130 0.00 0.00 0.00 3.66
211 212 6.575162 AATTCAAATAGGCTTCGTTTCAGT 57.425 33.333 0.00 0.00 0.00 3.41
212 213 8.020819 TGTAAATTCAAATAGGCTTCGTTTCAG 58.979 33.333 0.00 0.00 0.00 3.02
213 214 7.877003 TGTAAATTCAAATAGGCTTCGTTTCA 58.123 30.769 0.00 0.00 0.00 2.69
214 215 8.911247 ATGTAAATTCAAATAGGCTTCGTTTC 57.089 30.769 0.00 0.00 0.00 2.78
216 217 9.391006 TCTATGTAAATTCAAATAGGCTTCGTT 57.609 29.630 0.00 0.00 0.00 3.85
217 218 8.958119 TCTATGTAAATTCAAATAGGCTTCGT 57.042 30.769 0.00 0.00 0.00 3.85
227 228 9.540538 TCCCCTCAATTTCTATGTAAATTCAAA 57.459 29.630 0.00 0.00 37.03 2.69
228 229 9.540538 TTCCCCTCAATTTCTATGTAAATTCAA 57.459 29.630 0.00 0.00 37.03 2.69
229 230 9.713684 ATTCCCCTCAATTTCTATGTAAATTCA 57.286 29.630 0.00 0.00 37.03 2.57
230 231 9.971922 CATTCCCCTCAATTTCTATGTAAATTC 57.028 33.333 0.00 0.00 37.03 2.17
231 232 8.927411 CCATTCCCCTCAATTTCTATGTAAATT 58.073 33.333 0.00 0.00 39.14 1.82
232 233 8.288812 TCCATTCCCCTCAATTTCTATGTAAAT 58.711 33.333 0.00 0.00 0.00 1.40
233 234 7.647827 TCCATTCCCCTCAATTTCTATGTAAA 58.352 34.615 0.00 0.00 0.00 2.01
234 235 7.219601 TCCATTCCCCTCAATTTCTATGTAA 57.780 36.000 0.00 0.00 0.00 2.41
235 236 6.840090 TCCATTCCCCTCAATTTCTATGTA 57.160 37.500 0.00 0.00 0.00 2.29
236 237 5.732331 TCCATTCCCCTCAATTTCTATGT 57.268 39.130 0.00 0.00 0.00 2.29
237 238 7.693132 TCTATCCATTCCCCTCAATTTCTATG 58.307 38.462 0.00 0.00 0.00 2.23
238 239 7.895144 TCTATCCATTCCCCTCAATTTCTAT 57.105 36.000 0.00 0.00 0.00 1.98
239 240 7.705912 TTCTATCCATTCCCCTCAATTTCTA 57.294 36.000 0.00 0.00 0.00 2.10
240 241 6.596869 TTCTATCCATTCCCCTCAATTTCT 57.403 37.500 0.00 0.00 0.00 2.52
241 242 7.561356 TCTTTTCTATCCATTCCCCTCAATTTC 59.439 37.037 0.00 0.00 0.00 2.17
242 243 7.421684 TCTTTTCTATCCATTCCCCTCAATTT 58.578 34.615 0.00 0.00 0.00 1.82
243 244 6.985225 TCTTTTCTATCCATTCCCCTCAATT 58.015 36.000 0.00 0.00 0.00 2.32
244 245 6.596869 TCTTTTCTATCCATTCCCCTCAAT 57.403 37.500 0.00 0.00 0.00 2.57
245 246 6.596869 ATCTTTTCTATCCATTCCCCTCAA 57.403 37.500 0.00 0.00 0.00 3.02
246 247 6.851836 ACTATCTTTTCTATCCATTCCCCTCA 59.148 38.462 0.00 0.00 0.00 3.86
247 248 7.164803 CACTATCTTTTCTATCCATTCCCCTC 58.835 42.308 0.00 0.00 0.00 4.30
248 249 6.466470 GCACTATCTTTTCTATCCATTCCCCT 60.466 42.308 0.00 0.00 0.00 4.79
249 250 5.707764 GCACTATCTTTTCTATCCATTCCCC 59.292 44.000 0.00 0.00 0.00 4.81
250 251 6.538263 AGCACTATCTTTTCTATCCATTCCC 58.462 40.000 0.00 0.00 0.00 3.97
251 252 7.174080 GGAAGCACTATCTTTTCTATCCATTCC 59.826 40.741 0.00 0.00 0.00 3.01
252 253 7.936301 AGGAAGCACTATCTTTTCTATCCATTC 59.064 37.037 0.00 0.00 0.00 2.67
253 254 7.810260 AGGAAGCACTATCTTTTCTATCCATT 58.190 34.615 0.00 0.00 0.00 3.16
254 255 7.385894 AGGAAGCACTATCTTTTCTATCCAT 57.614 36.000 0.00 0.00 0.00 3.41
255 256 6.183361 GGAGGAAGCACTATCTTTTCTATCCA 60.183 42.308 0.00 0.00 31.55 3.41
256 257 6.227522 GGAGGAAGCACTATCTTTTCTATCC 58.772 44.000 0.00 0.00 0.00 2.59
257 258 5.923684 CGGAGGAAGCACTATCTTTTCTATC 59.076 44.000 0.00 0.00 0.00 2.08
258 259 5.364157 ACGGAGGAAGCACTATCTTTTCTAT 59.636 40.000 0.00 0.00 0.00 1.98
259 260 4.710375 ACGGAGGAAGCACTATCTTTTCTA 59.290 41.667 0.00 0.00 0.00 2.10
260 261 3.515901 ACGGAGGAAGCACTATCTTTTCT 59.484 43.478 0.00 0.00 0.00 2.52
261 262 3.863041 ACGGAGGAAGCACTATCTTTTC 58.137 45.455 0.00 0.00 0.00 2.29
262 263 3.983044 ACGGAGGAAGCACTATCTTTT 57.017 42.857 0.00 0.00 0.00 2.27
263 264 3.260884 TGAACGGAGGAAGCACTATCTTT 59.739 43.478 0.00 0.00 0.00 2.52
264 265 2.832129 TGAACGGAGGAAGCACTATCTT 59.168 45.455 0.00 0.00 0.00 2.40
265 266 2.166664 GTGAACGGAGGAAGCACTATCT 59.833 50.000 0.00 0.00 0.00 1.98
266 267 2.094182 TGTGAACGGAGGAAGCACTATC 60.094 50.000 0.00 0.00 0.00 2.08
267 268 1.899814 TGTGAACGGAGGAAGCACTAT 59.100 47.619 0.00 0.00 0.00 2.12
268 269 1.334160 TGTGAACGGAGGAAGCACTA 58.666 50.000 0.00 0.00 0.00 2.74
269 270 0.468226 TTGTGAACGGAGGAAGCACT 59.532 50.000 0.00 0.00 0.00 4.40
270 271 1.305201 TTTGTGAACGGAGGAAGCAC 58.695 50.000 0.00 0.00 0.00 4.40
271 272 2.270352 ATTTGTGAACGGAGGAAGCA 57.730 45.000 0.00 0.00 0.00 3.91
272 273 3.071479 TGTATTTGTGAACGGAGGAAGC 58.929 45.455 0.00 0.00 0.00 3.86
273 274 4.315803 ACTGTATTTGTGAACGGAGGAAG 58.684 43.478 0.00 0.00 0.00 3.46
274 275 4.345859 ACTGTATTTGTGAACGGAGGAA 57.654 40.909 0.00 0.00 0.00 3.36
275 276 5.670792 ATACTGTATTTGTGAACGGAGGA 57.329 39.130 0.00 0.00 0.00 3.71
276 277 7.262772 TCTTATACTGTATTTGTGAACGGAGG 58.737 38.462 5.52 0.00 0.00 4.30
277 278 8.873215 ATCTTATACTGTATTTGTGAACGGAG 57.127 34.615 5.52 0.00 0.00 4.63
278 279 9.661563 AAATCTTATACTGTATTTGTGAACGGA 57.338 29.630 5.52 0.00 0.00 4.69
298 299 8.515414 CGATCCAGAAAAAGGTTAGAAAATCTT 58.485 33.333 0.00 0.00 37.67 2.40
299 300 7.121315 CCGATCCAGAAAAAGGTTAGAAAATCT 59.879 37.037 0.00 0.00 0.00 2.40
300 301 7.120726 TCCGATCCAGAAAAAGGTTAGAAAATC 59.879 37.037 0.00 0.00 0.00 2.17
301 302 6.946009 TCCGATCCAGAAAAAGGTTAGAAAAT 59.054 34.615 0.00 0.00 0.00 1.82
302 303 6.300703 TCCGATCCAGAAAAAGGTTAGAAAA 58.699 36.000 0.00 0.00 0.00 2.29
303 304 5.871834 TCCGATCCAGAAAAAGGTTAGAAA 58.128 37.500 0.00 0.00 0.00 2.52
304 305 5.492855 TCCGATCCAGAAAAAGGTTAGAA 57.507 39.130 0.00 0.00 0.00 2.10
305 306 5.045869 ACATCCGATCCAGAAAAAGGTTAGA 60.046 40.000 0.00 0.00 0.00 2.10
306 307 5.186198 ACATCCGATCCAGAAAAAGGTTAG 58.814 41.667 0.00 0.00 0.00 2.34
307 308 5.174037 ACATCCGATCCAGAAAAAGGTTA 57.826 39.130 0.00 0.00 0.00 2.85
308 309 4.034285 ACATCCGATCCAGAAAAAGGTT 57.966 40.909 0.00 0.00 0.00 3.50
309 310 3.721087 ACATCCGATCCAGAAAAAGGT 57.279 42.857 0.00 0.00 0.00 3.50
310 311 4.770795 AGTACATCCGATCCAGAAAAAGG 58.229 43.478 0.00 0.00 0.00 3.11
311 312 4.811557 GGAGTACATCCGATCCAGAAAAAG 59.188 45.833 0.00 0.00 38.67 2.27
312 313 4.766375 GGAGTACATCCGATCCAGAAAAA 58.234 43.478 0.00 0.00 38.67 1.94
313 314 4.402056 GGAGTACATCCGATCCAGAAAA 57.598 45.455 0.00 0.00 38.67 2.29
325 326 1.137872 CACAGCTGGAGGGAGTACATC 59.862 57.143 19.93 0.00 0.00 3.06
326 327 1.198713 CACAGCTGGAGGGAGTACAT 58.801 55.000 19.93 0.00 0.00 2.29
327 328 0.114364 TCACAGCTGGAGGGAGTACA 59.886 55.000 19.93 0.00 0.00 2.90
328 329 1.410882 GATCACAGCTGGAGGGAGTAC 59.589 57.143 19.93 3.03 0.00 2.73
329 330 1.289231 AGATCACAGCTGGAGGGAGTA 59.711 52.381 19.93 0.00 0.00 2.59
330 331 0.042431 AGATCACAGCTGGAGGGAGT 59.958 55.000 19.93 0.00 0.00 3.85
331 332 2.079170 TAGATCACAGCTGGAGGGAG 57.921 55.000 19.93 0.50 0.00 4.30
332 333 2.501723 GTTTAGATCACAGCTGGAGGGA 59.498 50.000 19.93 10.23 0.00 4.20
333 334 2.739932 CGTTTAGATCACAGCTGGAGGG 60.740 54.545 19.93 4.62 0.00 4.30
334 335 2.544685 CGTTTAGATCACAGCTGGAGG 58.455 52.381 19.93 7.33 0.00 4.30
335 336 1.929836 GCGTTTAGATCACAGCTGGAG 59.070 52.381 19.93 10.48 0.00 3.86
336 337 1.550524 AGCGTTTAGATCACAGCTGGA 59.449 47.619 19.93 12.85 33.31 3.86
337 338 1.662629 CAGCGTTTAGATCACAGCTGG 59.337 52.381 19.93 7.28 45.67 4.85
339 340 1.550524 TCCAGCGTTTAGATCACAGCT 59.449 47.619 0.00 0.00 35.06 4.24
340 341 1.929836 CTCCAGCGTTTAGATCACAGC 59.070 52.381 0.00 0.00 0.00 4.40
341 342 3.238108 ACTCCAGCGTTTAGATCACAG 57.762 47.619 0.00 0.00 0.00 3.66
342 343 6.040504 ACATATACTCCAGCGTTTAGATCACA 59.959 38.462 0.00 0.00 0.00 3.58
343 344 6.448006 ACATATACTCCAGCGTTTAGATCAC 58.552 40.000 0.00 0.00 0.00 3.06
344 345 6.650427 ACATATACTCCAGCGTTTAGATCA 57.350 37.500 0.00 0.00 0.00 2.92
345 346 7.948278 AAACATATACTCCAGCGTTTAGATC 57.052 36.000 0.00 0.00 0.00 2.75
346 347 9.477484 CTAAAACATATACTCCAGCGTTTAGAT 57.523 33.333 0.00 0.00 0.00 1.98
347 348 7.437267 GCTAAAACATATACTCCAGCGTTTAGA 59.563 37.037 0.00 0.00 0.00 2.10
348 349 7.223971 TGCTAAAACATATACTCCAGCGTTTAG 59.776 37.037 0.00 0.00 0.00 1.85
349 350 7.042950 TGCTAAAACATATACTCCAGCGTTTA 58.957 34.615 0.00 0.00 0.00 2.01
350 351 5.878116 TGCTAAAACATATACTCCAGCGTTT 59.122 36.000 0.00 0.00 0.00 3.60
351 352 5.424757 TGCTAAAACATATACTCCAGCGTT 58.575 37.500 0.00 0.00 0.00 4.84
352 353 5.018539 TGCTAAAACATATACTCCAGCGT 57.981 39.130 0.00 0.00 0.00 5.07
353 354 5.466728 ACATGCTAAAACATATACTCCAGCG 59.533 40.000 0.00 0.00 0.00 5.18
354 355 6.867662 ACATGCTAAAACATATACTCCAGC 57.132 37.500 0.00 0.00 0.00 4.85
355 356 7.645340 GCAAACATGCTAAAACATATACTCCAG 59.355 37.037 0.00 0.00 0.00 3.86
356 357 7.339212 AGCAAACATGCTAAAACATATACTCCA 59.661 33.333 0.67 0.00 44.28 3.86
357 358 7.707104 AGCAAACATGCTAAAACATATACTCC 58.293 34.615 0.67 0.00 44.28 3.85
358 359 8.397906 TGAGCAAACATGCTAAAACATATACTC 58.602 33.333 2.89 0.00 46.36 2.59
398 399 8.607441 TGGATAGTTCAATATGTTCTGCATAC 57.393 34.615 0.00 0.00 42.28 2.39
432 433 9.778741 ATTCTACTCTTTCTGTTCACAAATACA 57.221 29.630 0.00 0.00 0.00 2.29
521 522 7.517614 TGAATTTACTATTCTTGTTGGTGCA 57.482 32.000 0.00 0.00 0.00 4.57
571 572 9.739276 AGTTTGACATCCAGAAAATGTAGATAA 57.261 29.630 0.00 0.00 37.47 1.75
577 578 5.363580 ACCAAGTTTGACATCCAGAAAATGT 59.636 36.000 0.00 0.00 39.99 2.71
578 579 5.846203 ACCAAGTTTGACATCCAGAAAATG 58.154 37.500 0.00 0.00 0.00 2.32
580 581 4.036262 CGACCAAGTTTGACATCCAGAAAA 59.964 41.667 0.00 0.00 0.00 2.29
584 585 2.480419 GTCGACCAAGTTTGACATCCAG 59.520 50.000 3.51 0.00 0.00 3.86
585 586 2.489971 GTCGACCAAGTTTGACATCCA 58.510 47.619 3.51 0.00 0.00 3.41
603 604 4.445452 TTCTTACGTGTGTAGGATGGTC 57.555 45.455 0.00 0.00 36.66 4.02
609 610 5.929992 TCAGGAAATTTCTTACGTGTGTAGG 59.070 40.000 17.42 0.00 0.00 3.18
610 611 7.360101 CCTTCAGGAAATTTCTTACGTGTGTAG 60.360 40.741 17.42 7.30 37.39 2.74
614 615 5.617252 TCCTTCAGGAAATTTCTTACGTGT 58.383 37.500 17.42 0.00 42.18 4.49
630 631 1.004044 ACCCTGCTGTCATTCCTTCAG 59.996 52.381 0.00 0.00 0.00 3.02
654 655 9.871238 GGTCTGACTGTATTTTCTTCACTATAA 57.129 33.333 7.85 0.00 0.00 0.98
687 688 6.916360 ATTGGAAAGCACTATTTGAAGGAA 57.084 33.333 0.00 0.00 0.00 3.36
725 726 5.995282 TGACATTCTAGGCGAAGAAGAAAAA 59.005 36.000 10.40 0.00 38.81 1.94
726 727 5.547465 TGACATTCTAGGCGAAGAAGAAAA 58.453 37.500 10.40 0.00 38.81 2.29
727 728 5.147330 TGACATTCTAGGCGAAGAAGAAA 57.853 39.130 10.40 0.00 38.81 2.52
728 729 4.801330 TGACATTCTAGGCGAAGAAGAA 57.199 40.909 10.40 2.65 38.81 2.52
733 734 2.158900 ACCCATGACATTCTAGGCGAAG 60.159 50.000 0.00 0.00 34.56 3.79
782 783 8.921353 AGTATACATAGTCGACCATTCTACTT 57.079 34.615 13.01 0.00 30.63 2.24
870 875 1.203038 AGATGGTTCCACATGCACCAA 60.203 47.619 9.90 0.00 43.85 3.67
871 876 0.405198 AGATGGTTCCACATGCACCA 59.595 50.000 8.62 8.62 44.75 4.17
882 887 6.406288 GGAATTTTTGGGAGATGAGATGGTTC 60.406 42.308 0.00 0.00 0.00 3.62
886 891 5.655532 ACAGGAATTTTTGGGAGATGAGATG 59.344 40.000 0.00 0.00 0.00 2.90
887 892 5.835582 ACAGGAATTTTTGGGAGATGAGAT 58.164 37.500 0.00 0.00 0.00 2.75
888 893 5.256474 GACAGGAATTTTTGGGAGATGAGA 58.744 41.667 0.00 0.00 0.00 3.27
889 894 4.400567 GGACAGGAATTTTTGGGAGATGAG 59.599 45.833 0.00 0.00 0.00 2.90
890 895 4.344104 GGACAGGAATTTTTGGGAGATGA 58.656 43.478 0.00 0.00 0.00 2.92
894 899 2.562738 GTGGGACAGGAATTTTTGGGAG 59.437 50.000 0.00 0.00 41.80 4.30
985 997 1.521010 CCATGGAGTGAGCTCAGCG 60.521 63.158 18.89 1.87 43.37 5.18
994 1006 4.415150 AGTGGCGGCCATGGAGTG 62.415 66.667 26.68 4.79 35.28 3.51
1639 1715 4.717629 CGTGGTGCGGAAGAGCGA 62.718 66.667 0.00 0.00 40.67 4.93
1759 1835 2.717044 CGAGGGCCACCATGTCGTA 61.717 63.158 6.18 0.00 40.13 3.43
1852 1928 4.570663 GACGGCGTGGATCTCCCG 62.571 72.222 21.19 10.69 45.80 5.14
1914 1990 1.375396 GTACATGTCCACCAGCGCA 60.375 57.895 11.47 0.00 0.00 6.09
2103 2179 1.153549 GGACATGGTGGTCTCGCTC 60.154 63.158 0.00 0.00 37.91 5.03
2361 2437 3.112709 GTGACGAGCTGGAACGCC 61.113 66.667 1.44 0.00 0.00 5.68
2377 2453 2.937379 GATGGCAGCTGCATCTCCGT 62.937 60.000 37.63 22.03 44.36 4.69
2403 2479 2.223923 CCTCTCATCTTCCGTGGATGAC 60.224 54.545 6.63 0.00 42.86 3.06
2409 2485 0.247460 TGCACCTCTCATCTTCCGTG 59.753 55.000 0.00 0.00 0.00 4.94
2411 2487 1.579698 CATGCACCTCTCATCTTCCG 58.420 55.000 0.00 0.00 0.00 4.30
2418 2494 1.375908 GTTCGGCATGCACCTCTCA 60.376 57.895 21.36 0.00 0.00 3.27
2421 2497 1.210155 GTTGTTCGGCATGCACCTC 59.790 57.895 21.36 7.58 0.00 3.85
2422 2498 0.895100 ATGTTGTTCGGCATGCACCT 60.895 50.000 21.36 0.00 0.00 4.00
2423 2499 0.456653 GATGTTGTTCGGCATGCACC 60.457 55.000 21.36 1.35 0.00 5.01
2424 2500 0.240678 TGATGTTGTTCGGCATGCAC 59.759 50.000 21.36 9.98 0.00 4.57
2425 2501 0.240678 GTGATGTTGTTCGGCATGCA 59.759 50.000 21.36 0.00 0.00 3.96
2426 2502 0.794229 CGTGATGTTGTTCGGCATGC 60.794 55.000 9.90 9.90 0.00 4.06
2625 2704 2.100631 GGTGATGACGTTCCGCCTG 61.101 63.158 0.00 0.00 0.00 4.85
2629 2708 0.037697 TTCCAGGTGATGACGTTCCG 60.038 55.000 0.00 0.00 0.00 4.30
2949 3028 1.376942 GCTGCTCCATGCTGACACT 60.377 57.895 0.00 0.00 42.27 3.55
3341 3430 1.815421 CTGTGGTACCGGAGCATGC 60.815 63.158 9.46 10.51 37.99 4.06
3471 3560 2.046285 CCGCCCAACCATCTTGGAC 61.046 63.158 0.00 0.00 40.96 4.02
3474 3563 1.750399 CTCCCGCCCAACCATCTTG 60.750 63.158 0.00 0.00 0.00 3.02
3534 3623 2.513204 CCACATGAGCAGGAGCCG 60.513 66.667 0.00 0.00 43.56 5.52
3540 3629 1.134580 CAGTAGTCCCCACATGAGCAG 60.135 57.143 0.00 0.00 0.00 4.24
3546 3635 3.105283 GTTCTACCAGTAGTCCCCACAT 58.895 50.000 4.81 0.00 34.84 3.21
3558 3647 0.512952 GCGTTGCTGTGTTCTACCAG 59.487 55.000 0.00 0.00 0.00 4.00
3588 3677 4.009675 GGATGCTGTTTCTATGGTGTGAA 58.990 43.478 0.00 0.00 0.00 3.18
3591 3680 3.009473 AGTGGATGCTGTTTCTATGGTGT 59.991 43.478 0.00 0.00 0.00 4.16
3592 3681 3.614092 AGTGGATGCTGTTTCTATGGTG 58.386 45.455 0.00 0.00 0.00 4.17
3598 3688 3.554934 TGTCAAAGTGGATGCTGTTTCT 58.445 40.909 0.00 0.00 0.00 2.52
3599 3689 3.988379 TGTCAAAGTGGATGCTGTTTC 57.012 42.857 0.00 0.00 0.00 2.78
3610 3700 6.757947 ACATTTCCTGTGATTTTGTCAAAGTG 59.242 34.615 0.00 0.00 40.09 3.16
3613 3703 6.760770 GGAACATTTCCTGTGATTTTGTCAAA 59.239 34.615 0.00 0.00 46.57 2.69
3634 3724 3.691118 TGCTGATATTGTGAGCAAGGAAC 59.309 43.478 0.00 0.00 39.75 3.62
3641 3731 5.178996 CCAGATAGTTGCTGATATTGTGAGC 59.821 44.000 0.00 0.00 35.39 4.26
3644 3734 7.741027 AATCCAGATAGTTGCTGATATTGTG 57.259 36.000 0.00 0.00 35.39 3.33
3646 3736 9.499479 AAGTAATCCAGATAGTTGCTGATATTG 57.501 33.333 0.00 0.00 35.39 1.90
3654 3744 8.768955 CACTTCATAAGTAATCCAGATAGTTGC 58.231 37.037 0.00 0.00 40.46 4.17
3669 3764 7.690256 ACAAGGGAGTATTTCACTTCATAAGT 58.310 34.615 0.00 0.00 46.78 2.24
3670 3765 8.043710 AGACAAGGGAGTATTTCACTTCATAAG 58.956 37.037 0.00 0.00 46.78 1.73
3686 3781 5.997746 TGTCTTACATTTTGAGACAAGGGAG 59.002 40.000 3.18 0.00 44.77 4.30
3688 3783 5.765182 ACTGTCTTACATTTTGAGACAAGGG 59.235 40.000 6.84 0.00 46.35 3.95
3689 3784 6.867662 ACTGTCTTACATTTTGAGACAAGG 57.132 37.500 6.84 0.14 46.35 3.61
3690 3785 7.645340 CCAAACTGTCTTACATTTTGAGACAAG 59.355 37.037 18.75 4.52 45.69 3.16
3692 3787 6.039270 CCCAAACTGTCTTACATTTTGAGACA 59.961 38.462 18.75 5.44 45.69 3.41
3693 3788 6.438763 CCCAAACTGTCTTACATTTTGAGAC 58.561 40.000 18.75 0.00 45.69 3.36
3695 3790 5.278957 CCCCCAAACTGTCTTACATTTTGAG 60.279 44.000 18.75 9.70 45.69 3.02
3696 3791 4.586841 CCCCCAAACTGTCTTACATTTTGA 59.413 41.667 18.75 0.00 45.69 2.69
3697 3792 4.881920 CCCCCAAACTGTCTTACATTTTG 58.118 43.478 13.07 13.07 43.80 2.44
3716 3811 4.247380 CTGCCGAGCTCATCCCCC 62.247 72.222 15.40 0.00 0.00 5.40
3717 3812 1.686325 TTACTGCCGAGCTCATCCCC 61.686 60.000 15.40 0.00 0.00 4.81
3718 3813 0.178068 TTTACTGCCGAGCTCATCCC 59.822 55.000 15.40 0.00 0.00 3.85
3719 3814 2.024176 TTTTACTGCCGAGCTCATCC 57.976 50.000 15.40 1.27 0.00 3.51
3720 3815 3.242870 CCAATTTTACTGCCGAGCTCATC 60.243 47.826 15.40 4.85 0.00 2.92
3721 3816 2.684881 CCAATTTTACTGCCGAGCTCAT 59.315 45.455 15.40 0.00 0.00 2.90
3722 3817 2.083774 CCAATTTTACTGCCGAGCTCA 58.916 47.619 15.40 0.00 0.00 4.26
3723 3818 2.356135 TCCAATTTTACTGCCGAGCTC 58.644 47.619 2.73 2.73 0.00 4.09
3724 3819 2.489938 TCCAATTTTACTGCCGAGCT 57.510 45.000 0.00 0.00 0.00 4.09
3725 3820 3.569250 TTTCCAATTTTACTGCCGAGC 57.431 42.857 0.00 0.00 0.00 5.03
3766 4117 9.811995 AGGTTCTAAAATTTGTTGAAGTTTACC 57.188 29.630 0.00 0.00 36.90 2.85
3770 4121 9.719355 AACAAGGTTCTAAAATTTGTTGAAGTT 57.281 25.926 0.00 0.00 39.65 2.66
3771 4122 9.719355 AAACAAGGTTCTAAAATTTGTTGAAGT 57.281 25.926 0.00 0.00 40.07 3.01
3782 4133 9.411189 ACACCATTAGTAAACAAGGTTCTAAAA 57.589 29.630 0.00 0.00 0.00 1.52
3783 4134 8.983702 ACACCATTAGTAAACAAGGTTCTAAA 57.016 30.769 0.00 0.00 0.00 1.85
3785 4136 7.737869 TGACACCATTAGTAAACAAGGTTCTA 58.262 34.615 0.00 0.00 0.00 2.10
3786 4137 6.597562 TGACACCATTAGTAAACAAGGTTCT 58.402 36.000 0.00 0.00 0.00 3.01
3787 4138 6.870971 TGACACCATTAGTAAACAAGGTTC 57.129 37.500 0.00 0.00 0.00 3.62
3790 4141 7.138736 CACTTTGACACCATTAGTAAACAAGG 58.861 38.462 0.00 0.00 0.00 3.61
3792 4143 6.095580 TGCACTTTGACACCATTAGTAAACAA 59.904 34.615 0.00 0.00 0.00 2.83
3793 4144 5.590663 TGCACTTTGACACCATTAGTAAACA 59.409 36.000 0.00 0.00 0.00 2.83
3795 4146 5.240623 CCTGCACTTTGACACCATTAGTAAA 59.759 40.000 0.00 0.00 0.00 2.01
3796 4147 4.759693 CCTGCACTTTGACACCATTAGTAA 59.240 41.667 0.00 0.00 0.00 2.24
3797 4148 4.202419 ACCTGCACTTTGACACCATTAGTA 60.202 41.667 0.00 0.00 0.00 1.82
3798 4149 3.149196 CCTGCACTTTGACACCATTAGT 58.851 45.455 0.00 0.00 0.00 2.24
3799 4150 3.149196 ACCTGCACTTTGACACCATTAG 58.851 45.455 0.00 0.00 0.00 1.73
3800 4151 3.146066 GACCTGCACTTTGACACCATTA 58.854 45.455 0.00 0.00 0.00 1.90
3802 4153 1.143684 AGACCTGCACTTTGACACCAT 59.856 47.619 0.00 0.00 0.00 3.55
3803 4154 0.546122 AGACCTGCACTTTGACACCA 59.454 50.000 0.00 0.00 0.00 4.17
3886 4329 2.612672 TCTTATCGTCTAGCTGACACCG 59.387 50.000 14.09 2.88 45.60 4.94
3907 4350 1.753073 CCTTCTGTACCCGTACCGAAT 59.247 52.381 10.91 0.00 38.17 3.34
3923 4366 6.819397 AGCATTAGTAAACAAGAACCCTTC 57.181 37.500 0.00 0.00 0.00 3.46
3927 4370 6.819146 AGCTCTAGCATTAGTAAACAAGAACC 59.181 38.462 4.54 0.00 45.16 3.62
3985 4428 6.323996 TGACTGATGGATAGTTATCTCGGTTT 59.676 38.462 5.05 0.00 30.92 3.27
3999 4442 5.664908 ACAGAAGAGGTTATGACTGATGGAT 59.335 40.000 0.00 0.00 0.00 3.41
4075 4518 7.737972 TTCCTGTCGTTTGATGAAATCTTTA 57.262 32.000 0.00 0.00 45.81 1.85
4079 4522 5.757886 TGTTTCCTGTCGTTTGATGAAATC 58.242 37.500 0.00 0.00 45.83 2.17
4081 4524 4.878971 TCTGTTTCCTGTCGTTTGATGAAA 59.121 37.500 0.00 0.00 0.00 2.69
4082 4525 4.447290 TCTGTTTCCTGTCGTTTGATGAA 58.553 39.130 0.00 0.00 0.00 2.57
4092 4536 6.801539 TGTTAACATCATCTGTTTCCTGTC 57.198 37.500 3.59 0.00 45.98 3.51
4107 4551 8.877864 TTATCCAGTCCTTCATTTGTTAACAT 57.122 30.769 9.56 0.00 0.00 2.71
4123 4567 7.607991 TCTTTTTGTGAGGAAGATTATCCAGTC 59.392 37.037 0.00 0.00 42.27 3.51
4124 4568 7.461749 TCTTTTTGTGAGGAAGATTATCCAGT 58.538 34.615 0.00 0.00 42.27 4.00
4141 4585 7.945134 AGCATTGAGTATTCAGTTCTTTTTGT 58.055 30.769 0.00 0.00 34.15 2.83
4160 4604 9.017669 GTTGCAGAAATCTTCTTATAAGCATTG 57.982 33.333 7.67 0.00 38.11 2.82
4161 4605 8.742777 TGTTGCAGAAATCTTCTTATAAGCATT 58.257 29.630 7.67 3.48 38.11 3.56
4163 4607 7.686438 TGTTGCAGAAATCTTCTTATAAGCA 57.314 32.000 7.67 0.00 38.11 3.91
4176 4620 8.199449 CCCATCTTACAATAATGTTGCAGAAAT 58.801 33.333 0.00 0.00 41.05 2.17
4195 4639 8.757307 TTAGTCCCTATATTTGATCCCATCTT 57.243 34.615 0.00 0.00 0.00 2.40
4210 4654 7.921041 TCTGAATTCAGTGATTAGTCCCTAT 57.079 36.000 29.80 0.00 44.12 2.57
4212 4656 6.214412 ACTTCTGAATTCAGTGATTAGTCCCT 59.786 38.462 29.80 7.16 44.12 4.20
4225 4669 7.815840 TTGTTATGGTTCACTTCTGAATTCA 57.184 32.000 8.12 8.12 38.69 2.57
4233 4678 7.173390 GCCTCCTATATTGTTATGGTTCACTTC 59.827 40.741 0.00 0.00 0.00 3.01
4241 4686 9.739276 TTTTATCTGCCTCCTATATTGTTATGG 57.261 33.333 0.00 0.00 0.00 2.74
4340 5002 3.032265 TCTTAGTCCTGCTGGCAGATA 57.968 47.619 20.86 5.11 46.30 1.98
4353 5015 6.818644 TCTTCATATGGTTGCACTTCTTAGTC 59.181 38.462 2.13 0.00 30.26 2.59
4356 5018 7.337938 TGATCTTCATATGGTTGCACTTCTTA 58.662 34.615 2.13 0.00 0.00 2.10
4362 5024 5.953183 TGTTTGATCTTCATATGGTTGCAC 58.047 37.500 2.13 0.00 0.00 4.57
4396 5058 4.795268 TCGATATCGAAGGTAATGCACTC 58.205 43.478 24.92 0.00 46.30 3.51
4415 5078 0.809385 GGAGTCCTGTTCGTGATCGA 59.191 55.000 0.41 0.00 44.66 3.59
4475 5138 1.609555 CGACCTAGTCCTGACTATGGC 59.390 57.143 7.44 6.45 42.44 4.40
4517 5180 2.930040 CAGTTCATATCGCCGTTCTGTT 59.070 45.455 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.