Multiple sequence alignment - TraesCS2A01G007100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G007100 chr2A 100.000 2437 0 0 971 3407 3100427 3102863 0.000000e+00 4501
1 TraesCS2A01G007100 chr2A 100.000 893 0 0 1 893 3099457 3100349 0.000000e+00 1650
2 TraesCS2A01G007100 chr2A 100.000 893 0 0 1 893 3322834 3321942 0.000000e+00 1650
3 TraesCS2A01G007100 chr2A 91.888 641 40 8 1980 2613 3305900 3305265 0.000000e+00 885
4 TraesCS2A01G007100 chr2A 81.488 551 101 1 984 1534 3334817 3334268 5.180000e-123 451
5 TraesCS2A01G007100 chr2D 92.056 1712 115 8 983 2686 5088185 5086487 0.000000e+00 2388
6 TraesCS2A01G007100 chr2D 88.109 513 39 13 396 893 5088884 5088379 1.050000e-164 590
7 TraesCS2A01G007100 chr2D 90.038 261 10 5 3155 3405 5085942 5085688 1.180000e-84 324
8 TraesCS2A01G007100 chr2D 79.389 393 44 16 25 398 5089282 5088908 3.400000e-60 243
9 TraesCS2A01G007100 chr2D 89.947 189 14 2 2924 3112 5086109 5085926 4.390000e-59 239
10 TraesCS2A01G007100 chr2D 92.308 156 10 2 2691 2845 5086259 5086105 1.590000e-53 220
11 TraesCS2A01G007100 chrUn 99.607 1018 4 0 971 1988 249550983 249552000 0.000000e+00 1858
12 TraesCS2A01G007100 chrUn 100.000 893 0 0 1 893 249549944 249550836 0.000000e+00 1650
13 TraesCS2A01G007100 chr2B 80.628 1497 285 4 987 2479 6337838 6339333 0.000000e+00 1153
14 TraesCS2A01G007100 chr6B 81.481 405 35 14 3024 3407 270812172 270811787 2.570000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G007100 chr2A 3099457 3102863 3406 False 3075.500000 4501 100.000000 1 3407 2 chr2A.!!$F1 3406
1 TraesCS2A01G007100 chr2A 3321942 3322834 892 True 1650.000000 1650 100.000000 1 893 1 chr2A.!!$R2 892
2 TraesCS2A01G007100 chr2A 3305265 3305900 635 True 885.000000 885 91.888000 1980 2613 1 chr2A.!!$R1 633
3 TraesCS2A01G007100 chr2A 3334268 3334817 549 True 451.000000 451 81.488000 984 1534 1 chr2A.!!$R3 550
4 TraesCS2A01G007100 chr2D 5085688 5089282 3594 True 667.333333 2388 88.641167 25 3405 6 chr2D.!!$R1 3380
5 TraesCS2A01G007100 chrUn 249549944 249552000 2056 False 1754.000000 1858 99.803500 1 1988 2 chrUn.!!$F1 1987
6 TraesCS2A01G007100 chr2B 6337838 6339333 1495 False 1153.000000 1153 80.628000 987 2479 1 chr2B.!!$F1 1492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1535 1704 3.577415 ACCACTCAGTTCAGGTAGGTAAC 59.423 47.826 0.0 0.0 31.32 2.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3317 3724 0.037734 AAAGCCCGAAACCCTAGGTG 59.962 55.0 8.29 1.63 35.34 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1535 1704 3.577415 ACCACTCAGTTCAGGTAGGTAAC 59.423 47.826 0.00 0.00 31.32 2.50
1791 1963 0.377554 AGATGTCGTCGACGGTGATC 59.622 55.000 35.05 28.86 40.29 2.92
1819 1991 0.322906 TATGGCAATGGACAACCGCA 60.323 50.000 0.00 0.00 34.11 5.69
2149 2321 2.907634 TGATCGAGCTCTTCTACGACT 58.092 47.619 12.85 0.00 37.58 4.18
2235 2407 2.181777 CTCAACTCGGCAGCGCTA 59.818 61.111 10.99 0.00 0.00 4.26
2310 2482 4.039245 CACTTGGACTACTTCTTCTGGACA 59.961 45.833 0.00 0.00 0.00 4.02
2340 2512 3.244526 TGCTCAGTGCCTTGAATCTGTTA 60.245 43.478 0.00 0.00 42.00 2.41
2473 2651 8.748412 TGACTATTCTTTGGGTGGAATTATTTG 58.252 33.333 0.00 0.00 34.52 2.32
2480 2658 8.164733 TCTTTGGGTGGAATTATTTGTACTACA 58.835 33.333 0.00 0.00 0.00 2.74
2543 2727 2.613595 CCATGATGCTTCGATTTTCGGA 59.386 45.455 0.00 0.00 40.88 4.55
2549 2733 5.920840 TGATGCTTCGATTTTCGGATACTAG 59.079 40.000 0.00 0.00 40.88 2.57
2550 2734 5.258456 TGCTTCGATTTTCGGATACTAGT 57.742 39.130 0.00 0.00 40.88 2.57
2558 2742 8.080417 TCGATTTTCGGATACTAGTAATTGAGG 58.920 37.037 6.70 0.00 40.88 3.86
2566 2750 8.361139 CGGATACTAGTAATTGAGGAAATGAGT 58.639 37.037 6.70 0.00 0.00 3.41
2570 2754 8.611051 ACTAGTAATTGAGGAAATGAGTAGGT 57.389 34.615 0.00 0.00 37.11 3.08
2580 2764 9.670442 TGAGGAAATGAGTAGGTAGGTAATAAT 57.330 33.333 0.00 0.00 0.00 1.28
2581 2765 9.930693 GAGGAAATGAGTAGGTAGGTAATAATG 57.069 37.037 0.00 0.00 0.00 1.90
2658 2842 8.564574 ACACTGATTTTTCGCTTAATTGTAGAA 58.435 29.630 0.00 0.00 0.00 2.10
2686 2870 4.034394 CGACATCATTGGTGGTCTAACATG 59.966 45.833 1.31 0.00 0.00 3.21
2687 2871 5.178096 ACATCATTGGTGGTCTAACATGA 57.822 39.130 0.00 0.00 0.00 3.07
2689 2873 5.415701 ACATCATTGGTGGTCTAACATGAAC 59.584 40.000 0.00 0.00 0.00 3.18
2710 3117 4.360563 ACTATGATTTAAGCGAGACACCG 58.639 43.478 0.00 0.00 0.00 4.94
2713 3120 2.492881 TGATTTAAGCGAGACACCGGTA 59.507 45.455 6.87 0.00 39.52 4.02
2720 3127 1.134560 GCGAGACACCGGTAGAGAAAT 59.865 52.381 6.87 0.00 0.00 2.17
2730 3137 7.618137 ACACCGGTAGAGAAATACAAAGTAAT 58.382 34.615 6.87 0.00 0.00 1.89
2770 3177 8.981659 TGATAGTTACATCAAAGATCTCCTTCA 58.018 33.333 0.00 0.00 33.02 3.02
2772 3179 7.251321 AGTTACATCAAAGATCTCCTTCAGT 57.749 36.000 0.00 0.00 33.02 3.41
2861 3268 7.789273 AATGCACAAATTGTTTTTCATCTCA 57.211 28.000 0.00 0.00 0.00 3.27
2862 3269 7.972832 ATGCACAAATTGTTTTTCATCTCAT 57.027 28.000 0.00 0.00 0.00 2.90
2863 3270 7.789273 TGCACAAATTGTTTTTCATCTCATT 57.211 28.000 0.00 0.00 0.00 2.57
2864 3271 8.211116 TGCACAAATTGTTTTTCATCTCATTT 57.789 26.923 0.00 0.00 0.00 2.32
2865 3272 8.336806 TGCACAAATTGTTTTTCATCTCATTTC 58.663 29.630 0.00 0.00 0.00 2.17
2866 3273 8.553696 GCACAAATTGTTTTTCATCTCATTTCT 58.446 29.630 0.00 0.00 0.00 2.52
2872 3279 9.820725 ATTGTTTTTCATCTCATTTCTTTGACA 57.179 25.926 0.00 0.00 0.00 3.58
2873 3280 9.820725 TTGTTTTTCATCTCATTTCTTTGACAT 57.179 25.926 0.00 0.00 0.00 3.06
2878 3285 8.812513 TTCATCTCATTTCTTTGACATATGGT 57.187 30.769 7.80 0.00 0.00 3.55
2879 3286 8.812513 TCATCTCATTTCTTTGACATATGGTT 57.187 30.769 7.80 0.00 0.00 3.67
2880 3287 9.246670 TCATCTCATTTCTTTGACATATGGTTT 57.753 29.630 7.80 0.00 0.00 3.27
2881 3288 9.865321 CATCTCATTTCTTTGACATATGGTTTT 57.135 29.630 7.80 0.00 0.00 2.43
2894 3301 3.592546 GGTTTTATAACCCGGCCCA 57.407 52.632 3.84 0.00 46.80 5.36
2895 3302 1.849977 GGTTTTATAACCCGGCCCAA 58.150 50.000 3.84 0.00 46.80 4.12
2896 3303 2.177734 GGTTTTATAACCCGGCCCAAA 58.822 47.619 3.84 0.00 46.80 3.28
2897 3304 2.094078 GGTTTTATAACCCGGCCCAAAC 60.094 50.000 3.84 0.00 46.80 2.93
2898 3305 1.849977 TTTATAACCCGGCCCAAACC 58.150 50.000 0.00 0.00 0.00 3.27
2899 3306 1.001282 TTATAACCCGGCCCAAACCT 58.999 50.000 0.00 0.00 0.00 3.50
2900 3307 0.256464 TATAACCCGGCCCAAACCTG 59.744 55.000 0.00 0.00 0.00 4.00
2901 3308 1.795951 ATAACCCGGCCCAAACCTGT 61.796 55.000 0.00 0.00 0.00 4.00
2902 3309 2.009208 TAACCCGGCCCAAACCTGTT 62.009 55.000 0.00 0.00 0.00 3.16
2903 3310 2.009208 AACCCGGCCCAAACCTGTTA 62.009 55.000 0.00 0.00 0.00 2.41
2904 3311 1.974875 CCCGGCCCAAACCTGTTAC 60.975 63.158 0.00 0.00 0.00 2.50
2905 3312 1.228306 CCGGCCCAAACCTGTTACA 60.228 57.895 0.00 0.00 0.00 2.41
2906 3313 1.520600 CCGGCCCAAACCTGTTACAC 61.521 60.000 0.00 0.00 0.00 2.90
2907 3314 0.820074 CGGCCCAAACCTGTTACACA 60.820 55.000 0.00 0.00 0.00 3.72
2908 3315 0.958822 GGCCCAAACCTGTTACACAG 59.041 55.000 0.00 0.00 45.53 3.66
2915 3322 4.397348 CTGTTACACAGGGCCCAC 57.603 61.111 27.56 13.15 42.35 4.61
2916 3323 1.303317 CTGTTACACAGGGCCCACC 60.303 63.158 27.56 3.36 42.35 4.61
2917 3324 2.359478 GTTACACAGGGCCCACCG 60.359 66.667 27.56 14.88 46.96 4.94
2918 3325 3.642503 TTACACAGGGCCCACCGG 61.643 66.667 27.56 13.06 46.96 5.28
2926 3333 4.699522 GGCCCACCGGTCAGACAC 62.700 72.222 2.59 0.00 32.15 3.67
2927 3334 3.936203 GCCCACCGGTCAGACACA 61.936 66.667 2.59 0.00 0.00 3.72
2928 3335 2.030562 CCCACCGGTCAGACACAC 59.969 66.667 2.59 0.00 0.00 3.82
2929 3336 2.030562 CCACCGGTCAGACACACC 59.969 66.667 2.59 0.00 0.00 4.16
2930 3337 2.030562 CACCGGTCAGACACACCC 59.969 66.667 2.59 0.00 0.00 4.61
2931 3338 2.445085 ACCGGTCAGACACACCCA 60.445 61.111 0.00 0.00 0.00 4.51
2932 3339 2.030562 CCGGTCAGACACACCCAC 59.969 66.667 2.17 0.00 0.00 4.61
2935 3342 1.006102 GGTCAGACACACCCACTCG 60.006 63.158 2.17 0.00 0.00 4.18
2939 3346 1.832608 AGACACACCCACTCGCTGA 60.833 57.895 0.00 0.00 0.00 4.26
2944 3351 1.367471 CACCCACTCGCTGACTCAA 59.633 57.895 0.00 0.00 0.00 3.02
2955 3362 3.256960 GACTCAAGGGGGCCACCA 61.257 66.667 30.24 4.03 42.91 4.17
2973 3380 0.387202 CACTCAGCTATACTGCGGCT 59.613 55.000 0.00 0.00 46.76 5.52
2974 3381 1.609072 CACTCAGCTATACTGCGGCTA 59.391 52.381 0.00 0.00 46.76 3.93
2976 3383 0.959553 TCAGCTATACTGCGGCTACC 59.040 55.000 0.00 0.00 46.76 3.18
3019 3426 1.451028 GCTCCACTCCACTGCCATC 60.451 63.158 0.00 0.00 0.00 3.51
3020 3427 1.222936 CTCCACTCCACTGCCATCC 59.777 63.158 0.00 0.00 0.00 3.51
3021 3428 2.124983 CCACTCCACTGCCATCCG 60.125 66.667 0.00 0.00 0.00 4.18
3022 3429 2.821366 CACTCCACTGCCATCCGC 60.821 66.667 0.00 0.00 38.31 5.54
3094 3501 2.546494 CCGCGATTCCTTCCATGGC 61.546 63.158 8.23 0.00 0.00 4.40
3095 3502 2.546494 CGCGATTCCTTCCATGGCC 61.546 63.158 6.96 0.00 0.00 5.36
3096 3503 2.546494 GCGATTCCTTCCATGGCCG 61.546 63.158 6.96 0.00 0.00 6.13
3097 3504 1.893808 CGATTCCTTCCATGGCCGG 60.894 63.158 6.96 9.89 0.00 6.13
3098 3505 2.123726 ATTCCTTCCATGGCCGGC 60.124 61.111 21.18 21.18 0.00 6.13
3099 3506 4.794648 TTCCTTCCATGGCCGGCG 62.795 66.667 22.54 6.52 0.00 6.46
3254 3661 4.135153 CACGAGTCCTGGGAGGCG 62.135 72.222 8.76 8.76 34.61 5.52
3299 3706 3.077556 CTCCAGGTGACCCCTCCG 61.078 72.222 0.00 0.00 43.86 4.63
3302 3709 3.775654 CAGGTGACCCCTCCGCTC 61.776 72.222 0.00 0.00 43.86 5.03
3306 3713 4.779733 TGACCCCTCCGCTCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
3310 3717 4.150454 CCCTCCGCTCCCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
3317 3724 0.682292 CGCTCCCTCCTCTTTATCCC 59.318 60.000 0.00 0.00 0.00 3.85
3383 3799 2.632377 GAAATGTCAGGCGGATGAGAA 58.368 47.619 0.00 0.00 0.00 2.87
3386 3802 0.037326 TGTCAGGCGGATGAGAACAC 60.037 55.000 0.00 0.00 0.00 3.32
3402 3818 2.284625 ACGAGGATGTGGGAGGCA 60.285 61.111 0.00 0.00 0.00 4.75
3404 3820 1.450312 CGAGGATGTGGGAGGCAAC 60.450 63.158 0.00 0.00 0.00 4.17
3405 3821 1.450312 GAGGATGTGGGAGGCAACG 60.450 63.158 0.00 0.00 46.39 4.10
3406 3822 2.185310 GAGGATGTGGGAGGCAACGT 62.185 60.000 0.00 0.00 46.39 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1791 1963 1.168407 CCATTGCCATACCCTGCTCG 61.168 60.000 0.00 0.00 0.00 5.03
1819 1991 2.124736 CACGGCGAATGACCCCAT 60.125 61.111 16.62 0.00 33.66 4.00
2149 2321 2.184020 CTCATGTTGTCCGGAGCCCA 62.184 60.000 3.06 1.03 0.00 5.36
2310 2482 4.208632 GCACTGAGCACCGCTATT 57.791 55.556 0.00 0.00 44.79 1.73
2355 2527 9.406828 GCTACGTTATCATTGTACATCATAGAA 57.593 33.333 0.00 0.00 0.00 2.10
2363 2535 5.513849 CGACAAGCTACGTTATCATTGTACA 59.486 40.000 0.00 0.00 31.44 2.90
2424 2601 1.160137 AGCTTGATCGAGTGTTTGCC 58.840 50.000 11.71 0.00 0.00 4.52
2433 2610 6.214191 AGAATAGTCAAGAAGCTTGATCGA 57.786 37.500 2.10 0.00 0.00 3.59
2473 2651 0.373716 GCATGCCGCAACTGTAGTAC 59.626 55.000 6.36 0.00 41.79 2.73
2480 2658 2.034687 AAGAGGCATGCCGCAACT 59.965 55.556 37.09 26.68 45.17 3.16
2549 2733 7.793036 ACCTACCTACTCATTTCCTCAATTAC 58.207 38.462 0.00 0.00 0.00 1.89
2550 2734 7.989947 ACCTACCTACTCATTTCCTCAATTA 57.010 36.000 0.00 0.00 0.00 1.40
2658 2842 3.074412 GACCACCAATGATGTCGACTTT 58.926 45.455 17.92 4.03 0.00 2.66
2686 2870 5.051641 CGGTGTCTCGCTTAAATCATAGTTC 60.052 44.000 0.00 0.00 0.00 3.01
2687 2871 4.804139 CGGTGTCTCGCTTAAATCATAGTT 59.196 41.667 0.00 0.00 0.00 2.24
2689 2873 3.736252 CCGGTGTCTCGCTTAAATCATAG 59.264 47.826 0.00 0.00 0.00 2.23
2713 3120 7.255139 GCCGCCAATATTACTTTGTATTTCTCT 60.255 37.037 0.00 0.00 0.00 3.10
2720 3127 3.310227 CGTGCCGCCAATATTACTTTGTA 59.690 43.478 0.00 0.00 0.00 2.41
2730 3137 1.134640 ACTATCAACGTGCCGCCAATA 60.135 47.619 0.00 0.00 0.00 1.90
2743 3150 9.823647 GAAGGAGATCTTTGATGTAACTATCAA 57.176 33.333 0.00 0.00 43.32 2.57
2744 3151 8.981659 TGAAGGAGATCTTTGATGTAACTATCA 58.018 33.333 0.00 0.00 35.50 2.15
2840 3247 8.553696 AGAAATGAGATGAAAAACAATTTGTGC 58.446 29.630 2.13 0.00 0.00 4.57
2846 3253 9.820725 TGTCAAAGAAATGAGATGAAAAACAAT 57.179 25.926 0.00 0.00 0.00 2.71
2847 3254 9.820725 ATGTCAAAGAAATGAGATGAAAAACAA 57.179 25.926 0.00 0.00 32.59 2.83
2852 3259 9.246670 ACCATATGTCAAAGAAATGAGATGAAA 57.753 29.630 1.24 0.00 34.53 2.69
2853 3260 8.812513 ACCATATGTCAAAGAAATGAGATGAA 57.187 30.769 1.24 0.00 34.53 2.57
2854 3261 8.812513 AACCATATGTCAAAGAAATGAGATGA 57.187 30.769 1.24 0.00 34.53 2.92
2855 3262 9.865321 AAAACCATATGTCAAAGAAATGAGATG 57.135 29.630 1.24 0.00 34.53 2.90
2877 3284 2.094078 GGTTTGGGCCGGGTTATAAAAC 60.094 50.000 2.18 0.92 34.66 2.43
2878 3285 2.177734 GGTTTGGGCCGGGTTATAAAA 58.822 47.619 2.18 0.00 0.00 1.52
2879 3286 1.358445 AGGTTTGGGCCGGGTTATAAA 59.642 47.619 2.18 0.00 0.00 1.40
2880 3287 1.001282 AGGTTTGGGCCGGGTTATAA 58.999 50.000 2.18 0.00 0.00 0.98
2881 3288 0.256464 CAGGTTTGGGCCGGGTTATA 59.744 55.000 2.18 0.00 0.00 0.98
2882 3289 1.000145 CAGGTTTGGGCCGGGTTAT 60.000 57.895 2.18 0.00 0.00 1.89
2883 3290 2.009208 AACAGGTTTGGGCCGGGTTA 62.009 55.000 2.18 0.00 32.16 2.85
2884 3291 2.009208 TAACAGGTTTGGGCCGGGTT 62.009 55.000 2.18 0.00 35.89 4.11
2885 3292 2.462626 TAACAGGTTTGGGCCGGGT 61.463 57.895 2.18 0.00 0.00 5.28
2886 3293 1.974875 GTAACAGGTTTGGGCCGGG 60.975 63.158 2.18 0.00 0.00 5.73
2887 3294 1.228306 TGTAACAGGTTTGGGCCGG 60.228 57.895 0.00 0.00 0.00 6.13
2888 3295 0.820074 TGTGTAACAGGTTTGGGCCG 60.820 55.000 0.00 0.00 45.67 6.13
2889 3296 3.119225 TGTGTAACAGGTTTGGGCC 57.881 52.632 0.00 0.00 45.67 5.80
2900 3307 2.359478 CGGTGGGCCCTGTGTAAC 60.359 66.667 25.70 11.64 37.35 2.50
2901 3308 3.642503 CCGGTGGGCCCTGTGTAA 61.643 66.667 25.70 0.00 0.00 2.41
2902 3309 4.966274 ACCGGTGGGCCCTGTGTA 62.966 66.667 25.70 0.00 36.48 2.90
2909 3316 4.699522 GTGTCTGACCGGTGGGCC 62.700 72.222 14.63 0.00 36.48 5.80
2910 3317 3.936203 TGTGTCTGACCGGTGGGC 61.936 66.667 14.63 6.85 36.48 5.36
2911 3318 2.030562 GTGTGTCTGACCGGTGGG 59.969 66.667 14.63 4.05 40.11 4.61
2912 3319 2.030562 GGTGTGTCTGACCGGTGG 59.969 66.667 14.63 4.50 0.00 4.61
2913 3320 2.030562 GGGTGTGTCTGACCGGTG 59.969 66.667 14.63 0.00 33.89 4.94
2914 3321 2.445085 TGGGTGTGTCTGACCGGT 60.445 61.111 6.92 6.92 33.89 5.28
2915 3322 2.030562 GTGGGTGTGTCTGACCGG 59.969 66.667 0.00 0.00 33.89 5.28
2916 3323 1.006102 GAGTGGGTGTGTCTGACCG 60.006 63.158 5.17 0.00 33.89 4.79
2917 3324 1.006102 CGAGTGGGTGTGTCTGACC 60.006 63.158 5.17 0.00 0.00 4.02
2918 3325 1.664965 GCGAGTGGGTGTGTCTGAC 60.665 63.158 0.00 0.00 0.00 3.51
2919 3326 1.832608 AGCGAGTGGGTGTGTCTGA 60.833 57.895 0.00 0.00 0.00 3.27
2920 3327 1.665916 CAGCGAGTGGGTGTGTCTG 60.666 63.158 0.00 0.00 39.31 3.51
2921 3328 1.832608 TCAGCGAGTGGGTGTGTCT 60.833 57.895 4.20 0.00 44.48 3.41
2922 3329 1.664965 GTCAGCGAGTGGGTGTGTC 60.665 63.158 4.20 0.00 44.48 3.67
2923 3330 2.088674 GAGTCAGCGAGTGGGTGTGT 62.089 60.000 4.20 0.00 44.48 3.72
2924 3331 1.373497 GAGTCAGCGAGTGGGTGTG 60.373 63.158 4.20 0.00 44.48 3.82
2925 3332 1.399744 TTGAGTCAGCGAGTGGGTGT 61.400 55.000 4.20 0.00 44.48 4.16
2926 3333 0.668706 CTTGAGTCAGCGAGTGGGTG 60.669 60.000 0.00 0.00 45.52 4.61
2927 3334 1.668294 CTTGAGTCAGCGAGTGGGT 59.332 57.895 0.00 0.00 0.00 4.51
2928 3335 1.079543 CCTTGAGTCAGCGAGTGGG 60.080 63.158 0.00 0.00 0.00 4.61
2929 3336 1.079543 CCCTTGAGTCAGCGAGTGG 60.080 63.158 0.00 0.00 0.00 4.00
2930 3337 1.079543 CCCCTTGAGTCAGCGAGTG 60.080 63.158 0.00 0.00 0.00 3.51
2931 3338 2.286523 CCCCCTTGAGTCAGCGAGT 61.287 63.158 0.00 0.00 0.00 4.18
2932 3339 2.581354 CCCCCTTGAGTCAGCGAG 59.419 66.667 0.00 0.00 0.00 5.03
2935 3342 3.650950 TGGCCCCCTTGAGTCAGC 61.651 66.667 0.00 0.00 0.00 4.26
2939 3346 3.580319 GTGGTGGCCCCCTTGAGT 61.580 66.667 5.62 0.00 0.00 3.41
2973 3380 4.096003 GGCGCAGGAGCTTGGGTA 62.096 66.667 10.83 0.00 39.10 3.69
3021 3428 2.966309 CTTTCTTGTCACGGCGGGC 61.966 63.158 13.24 3.94 0.00 6.13
3022 3429 2.966309 GCTTTCTTGTCACGGCGGG 61.966 63.158 13.24 7.61 0.00 6.13
3072 3479 1.051812 ATGGAAGGAATCGCGGAGAT 58.948 50.000 6.13 0.00 42.43 2.75
3254 3661 4.415332 TGGAGGAGAACGTCGCGC 62.415 66.667 0.00 0.00 0.00 6.86
3299 3706 1.418264 GTGGGATAAAGAGGAGGGAGC 59.582 57.143 0.00 0.00 0.00 4.70
3301 3708 1.657162 AGGTGGGATAAAGAGGAGGGA 59.343 52.381 0.00 0.00 0.00 4.20
3302 3709 2.198334 AGGTGGGATAAAGAGGAGGG 57.802 55.000 0.00 0.00 0.00 4.30
3303 3710 3.243724 CCTAGGTGGGATAAAGAGGAGG 58.756 54.545 0.00 0.00 0.00 4.30
3317 3724 0.037734 AAAGCCCGAAACCCTAGGTG 59.962 55.000 8.29 1.63 35.34 4.00
3383 3799 2.660064 GCCTCCCACATCCTCGTGT 61.660 63.158 0.00 0.00 34.98 4.49
3386 3802 1.450312 GTTGCCTCCCACATCCTCG 60.450 63.158 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.