Multiple sequence alignment - TraesCS2A01G005900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G005900 chr2A 100.000 3293 0 0 1 3293 2761115 2757823 0.000000e+00 6082.0
1 TraesCS2A01G005900 chr2A 91.032 591 42 9 1 587 458963279 458962696 0.000000e+00 787.0
2 TraesCS2A01G005900 chr2A 84.962 133 10 8 3116 3244 472356172 472356298 3.450000e-25 126.0
3 TraesCS2A01G005900 chr2A 83.333 132 19 3 3120 3250 445306414 445306543 5.770000e-23 119.0
4 TraesCS2A01G005900 chr6D 91.160 1742 126 9 604 2338 18094228 18092508 0.000000e+00 2338.0
5 TraesCS2A01G005900 chr6D 93.800 629 30 7 2316 2941 18092461 18091839 0.000000e+00 937.0
6 TraesCS2A01G005900 chr6D 90.741 594 45 6 1 587 441325074 441325664 0.000000e+00 784.0
7 TraesCS2A01G005900 chr2B 89.428 1731 162 8 604 2332 7773443 7771732 0.000000e+00 2163.0
8 TraesCS2A01G005900 chr2B 88.934 994 90 5 1345 2338 7881704 7880731 0.000000e+00 1208.0
9 TraesCS2A01G005900 chr2B 88.383 835 65 15 2316 3122 7880684 7879854 0.000000e+00 976.0
10 TraesCS2A01G005900 chr2B 90.402 448 28 7 2686 3122 7771345 7770902 2.850000e-160 575.0
11 TraesCS2A01G005900 chr2B 91.860 344 25 2 2316 2659 7771677 7771337 8.270000e-131 477.0
12 TraesCS2A01G005900 chr2B 91.538 130 8 2 3123 3251 298008943 298008816 3.380000e-40 176.0
13 TraesCS2A01G005900 chr2B 100.000 37 0 0 3257 3293 7770900 7770864 5.900000e-08 69.4
14 TraesCS2A01G005900 chr2B 100.000 37 0 0 3257 3293 7879852 7879816 5.900000e-08 69.4
15 TraesCS2A01G005900 chr2D 88.736 1749 150 20 588 2332 2908847 2910552 0.000000e+00 2095.0
16 TraesCS2A01G005900 chr2D 90.816 882 69 5 588 1468 2823882 2824752 0.000000e+00 1170.0
17 TraesCS2A01G005900 chr2D 88.835 824 53 14 2333 3122 2911907 2912725 0.000000e+00 976.0
18 TraesCS2A01G005900 chr7A 98.467 587 9 0 1 587 707677426 707678012 0.000000e+00 1035.0
19 TraesCS2A01G005900 chr6B 98.467 587 9 0 1 587 704750172 704750758 0.000000e+00 1035.0
20 TraesCS2A01G005900 chr6B 93.581 592 31 4 1 588 650773778 650774366 0.000000e+00 876.0
21 TraesCS2A01G005900 chr5A 96.780 590 17 2 1 588 547400616 547401205 0.000000e+00 983.0
22 TraesCS2A01G005900 chr7D 93.109 595 35 4 1 591 530860333 530859741 0.000000e+00 867.0
23 TraesCS2A01G005900 chr7D 91.371 591 47 2 1 587 89081683 89081093 0.000000e+00 806.0
24 TraesCS2A01G005900 chr7D 86.667 135 12 5 3119 3250 617594869 617594738 9.520000e-31 145.0
25 TraesCS2A01G005900 chr7D 85.271 129 9 9 3123 3245 563516485 563516609 1.240000e-24 124.0
26 TraesCS2A01G005900 chr4D 93.074 592 36 3 1 587 440458323 440457732 0.000000e+00 861.0
27 TraesCS2A01G005900 chr1D 87.805 123 8 6 3123 3241 270036840 270036721 1.590000e-28 137.0
28 TraesCS2A01G005900 chr1D 85.271 129 11 7 3119 3243 431797952 431797828 3.450000e-25 126.0
29 TraesCS2A01G005900 chr3A 84.848 132 17 2 3120 3250 691505885 691506014 2.670000e-26 130.0
30 TraesCS2A01G005900 chr3D 84.375 128 18 1 3123 3250 397922298 397922173 1.240000e-24 124.0
31 TraesCS2A01G005900 chr5D 100.000 29 0 0 1844 1872 549325062 549325090 2.000000e-03 54.7
32 TraesCS2A01G005900 chr4A 100.000 29 0 0 1844 1872 620952034 620952062 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G005900 chr2A 2757823 2761115 3292 True 6082.000000 6082 100.0000 1 3293 1 chr2A.!!$R1 3292
1 TraesCS2A01G005900 chr2A 458962696 458963279 583 True 787.000000 787 91.0320 1 587 1 chr2A.!!$R2 586
2 TraesCS2A01G005900 chr6D 18091839 18094228 2389 True 1637.500000 2338 92.4800 604 2941 2 chr6D.!!$R1 2337
3 TraesCS2A01G005900 chr6D 441325074 441325664 590 False 784.000000 784 90.7410 1 587 1 chr6D.!!$F1 586
4 TraesCS2A01G005900 chr2B 7770864 7773443 2579 True 821.100000 2163 92.9225 604 3293 4 chr2B.!!$R2 2689
5 TraesCS2A01G005900 chr2B 7879816 7881704 1888 True 751.133333 1208 92.4390 1345 3293 3 chr2B.!!$R3 1948
6 TraesCS2A01G005900 chr2D 2908847 2912725 3878 False 1535.500000 2095 88.7855 588 3122 2 chr2D.!!$F2 2534
7 TraesCS2A01G005900 chr2D 2823882 2824752 870 False 1170.000000 1170 90.8160 588 1468 1 chr2D.!!$F1 880
8 TraesCS2A01G005900 chr7A 707677426 707678012 586 False 1035.000000 1035 98.4670 1 587 1 chr7A.!!$F1 586
9 TraesCS2A01G005900 chr6B 704750172 704750758 586 False 1035.000000 1035 98.4670 1 587 1 chr6B.!!$F2 586
10 TraesCS2A01G005900 chr6B 650773778 650774366 588 False 876.000000 876 93.5810 1 588 1 chr6B.!!$F1 587
11 TraesCS2A01G005900 chr5A 547400616 547401205 589 False 983.000000 983 96.7800 1 588 1 chr5A.!!$F1 587
12 TraesCS2A01G005900 chr7D 530859741 530860333 592 True 867.000000 867 93.1090 1 591 1 chr7D.!!$R2 590
13 TraesCS2A01G005900 chr7D 89081093 89081683 590 True 806.000000 806 91.3710 1 587 1 chr7D.!!$R1 586
14 TraesCS2A01G005900 chr4D 440457732 440458323 591 True 861.000000 861 93.0740 1 587 1 chr4D.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
379 389 0.803380 GTTAACGGCCATCTACGCGT 60.803 55.0 19.17 19.17 0.0 6.01 F
1671 1689 0.392706 AGGATATGTTCATCGCCGCA 59.607 50.0 0.00 0.00 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 1975 0.950836 CGATTGCCCACAAGTTGACA 59.049 50.0 10.54 0.0 39.69 3.58 R
3206 4664 0.171231 GCATTGAACTCGCTTTCCCC 59.829 55.0 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
379 389 0.803380 GTTAACGGCCATCTACGCGT 60.803 55.000 19.17 19.17 0.00 6.01
588 602 8.842280 TGTGGTAGTTTTTGGTTAAATACTCTG 58.158 33.333 0.00 0.00 38.47 3.35
589 603 8.843262 GTGGTAGTTTTTGGTTAAATACTCTGT 58.157 33.333 0.00 0.00 38.47 3.41
602 616 9.727627 GTTAAATACTCTGTATAAGTACGTGCT 57.272 33.333 0.00 0.00 32.30 4.40
612 626 6.915843 TGTATAAGTACGTGCTACACATGATG 59.084 38.462 6.58 0.00 38.75 3.07
623 637 1.339438 ACACATGATGGCACTCTCCAC 60.339 52.381 0.00 0.00 39.25 4.02
629 643 1.486997 ATGGCACTCTCCACACAGCT 61.487 55.000 0.00 0.00 39.25 4.24
630 644 1.670406 GGCACTCTCCACACAGCTG 60.670 63.158 13.48 13.48 0.00 4.24
631 645 1.670406 GCACTCTCCACACAGCTGG 60.670 63.158 19.93 9.66 0.00 4.85
632 646 1.670406 CACTCTCCACACAGCTGGC 60.670 63.158 19.93 0.00 0.00 4.85
633 647 1.840650 ACTCTCCACACAGCTGGCT 60.841 57.895 19.93 0.00 0.00 4.75
660 674 1.238439 CGCCAACAATGTGGTTCTCT 58.762 50.000 0.00 0.00 41.12 3.10
673 687 1.679944 GGTTCTCTGCATTGCTGGCTA 60.680 52.381 14.55 0.00 0.00 3.93
674 688 1.399791 GTTCTCTGCATTGCTGGCTAC 59.600 52.381 14.55 7.19 0.00 3.58
675 689 0.907486 TCTCTGCATTGCTGGCTACT 59.093 50.000 14.55 0.00 0.00 2.57
676 690 2.110578 TCTCTGCATTGCTGGCTACTA 58.889 47.619 14.55 0.00 0.00 1.82
677 691 2.702478 TCTCTGCATTGCTGGCTACTAT 59.298 45.455 14.55 0.00 0.00 2.12
678 692 3.897505 TCTCTGCATTGCTGGCTACTATA 59.102 43.478 14.55 0.00 0.00 1.31
698 712 2.480224 TATAGTAGCAACGACGGTGC 57.520 50.000 29.94 29.94 0.00 5.01
701 715 2.126618 TAGCAACGACGGTGCTCG 60.127 61.111 41.04 9.85 45.88 5.03
735 749 1.865248 GCACATCCTGCACAAACACAC 60.865 52.381 0.00 0.00 46.29 3.82
755 769 3.510360 CACCCGAAAGAGAGTTTCTCCTA 59.490 47.826 2.60 0.00 44.42 2.94
763 777 2.501723 GAGAGTTTCTCCTACATGGCCA 59.498 50.000 8.56 8.56 37.55 5.36
800 814 1.750399 CCCATCCTCGGCAACTTGG 60.750 63.158 0.00 0.00 0.00 3.61
872 886 1.453197 GCCCAAACCTATGGACCCG 60.453 63.158 0.00 0.00 43.54 5.28
877 891 2.502538 CCAAACCTATGGACCCGTCTTA 59.497 50.000 0.00 0.00 43.54 2.10
903 917 1.070786 GTCTTGGTCTGACCCGCAA 59.929 57.895 23.42 10.71 37.50 4.85
1005 1020 1.374125 CACCGTTCGCTCCATGTCA 60.374 57.895 0.00 0.00 0.00 3.58
1094 1109 4.821589 CGCCCGCTTCTCCTCCAC 62.822 72.222 0.00 0.00 0.00 4.02
1096 1111 3.003173 CCCGCTTCTCCTCCACCA 61.003 66.667 0.00 0.00 0.00 4.17
1097 1112 2.592993 CCCGCTTCTCCTCCACCAA 61.593 63.158 0.00 0.00 0.00 3.67
1259 1274 2.600470 CTCTTCTCTGAGGATGTGGC 57.400 55.000 4.59 0.00 0.00 5.01
1520 1538 1.602605 TGCTGGACGTTCTCCTCGA 60.603 57.895 0.00 0.00 40.26 4.04
1597 1615 4.181578 ACGTACATCCATTGAGTACTTGC 58.818 43.478 0.00 0.00 36.77 4.01
1606 1624 5.945784 TCCATTGAGTACTTGCTTTGCTTAT 59.054 36.000 0.00 0.00 0.00 1.73
1667 1685 4.871513 TCTGTACAGGATATGTTCATCGC 58.128 43.478 22.48 0.00 39.96 4.58
1668 1686 3.990092 TGTACAGGATATGTTCATCGCC 58.010 45.455 0.00 0.00 39.96 5.54
1669 1687 2.154854 ACAGGATATGTTCATCGCCG 57.845 50.000 0.00 0.00 39.96 6.46
1670 1688 0.792640 CAGGATATGTTCATCGCCGC 59.207 55.000 0.00 0.00 0.00 6.53
1671 1689 0.392706 AGGATATGTTCATCGCCGCA 59.607 50.000 0.00 0.00 0.00 5.69
1672 1690 1.202639 AGGATATGTTCATCGCCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
1673 1691 1.195448 GGATATGTTCATCGCCGCAAG 59.805 52.381 0.00 0.00 0.00 4.01
1701 1719 2.027024 GACACGAGCACGGTGACA 59.973 61.111 13.29 0.00 44.46 3.58
1740 1758 2.125512 CTACTGCGCCACCCAGAC 60.126 66.667 4.18 0.00 34.47 3.51
1989 2008 0.468648 CAATCGGAAGGGACCCTACC 59.531 60.000 15.29 8.94 31.13 3.18
2010 2029 3.340034 CGTATGGCCTCAACCTAACAAA 58.660 45.455 3.32 0.00 0.00 2.83
2082 2103 2.032620 CAGGGCAAGGACGACTATACT 58.967 52.381 0.00 0.00 0.00 2.12
2163 2184 1.065600 GACTCTGCTGCTAGCCTCG 59.934 63.158 13.29 1.61 41.51 4.63
2174 2195 0.459237 CTAGCCTCGCTTGTCCACAG 60.459 60.000 0.00 0.00 40.44 3.66
2205 2226 0.882042 GACTACCTGATGGCATGGCG 60.882 60.000 15.27 1.99 36.63 5.69
2419 3796 8.975295 TCCTACCCTTTAAGTCTTGTAATCTAC 58.025 37.037 0.00 0.00 0.00 2.59
2463 3846 3.077359 GAGGCTCAGCAATACAACAAGT 58.923 45.455 10.25 0.00 0.00 3.16
2534 3917 5.559148 ACAGAAGAGAAACTCAATGTCCT 57.441 39.130 0.00 0.00 32.06 3.85
2550 3933 5.937492 ATGTCCTGGATAGGGAAATCAAT 57.063 39.130 0.00 0.00 44.70 2.57
2601 3984 5.389859 TCAATATCTTGTGGCCTTGTTTG 57.610 39.130 3.32 0.00 33.87 2.93
2694 4115 5.649782 AGTCCAACAAGAATATTGGCTTG 57.350 39.130 12.90 12.90 44.34 4.01
2700 4121 6.327934 CAACAAGAATATTGGCTTGGAAGAG 58.672 40.000 16.87 3.53 44.33 2.85
2788 4236 7.752695 ACTATTTCACCATCTTTTTCGATCAC 58.247 34.615 0.00 0.00 0.00 3.06
2842 4290 6.197364 ACAGTTGGATTTTAACACAACGAA 57.803 33.333 0.00 0.00 45.69 3.85
2843 4291 6.622549 ACAGTTGGATTTTAACACAACGAAA 58.377 32.000 0.00 0.00 45.69 3.46
2936 4385 3.064820 AGTTTGTTTACGTCCTGTGCAAG 59.935 43.478 0.00 0.00 0.00 4.01
3015 4464 1.846007 TGTCTGTGCAAGTTTGGGTT 58.154 45.000 0.00 0.00 0.00 4.11
3134 4592 8.996024 ACTTGAATTATTATTTTTGAACCGGG 57.004 30.769 6.32 0.00 0.00 5.73
3135 4593 7.547722 ACTTGAATTATTATTTTTGAACCGGGC 59.452 33.333 6.32 0.00 0.00 6.13
3136 4594 6.936279 TGAATTATTATTTTTGAACCGGGCA 58.064 32.000 6.32 0.00 0.00 5.36
3137 4595 7.560368 TGAATTATTATTTTTGAACCGGGCAT 58.440 30.769 6.32 0.00 0.00 4.40
3138 4596 8.696374 TGAATTATTATTTTTGAACCGGGCATA 58.304 29.630 6.32 0.00 0.00 3.14
3139 4597 9.535878 GAATTATTATTTTTGAACCGGGCATAA 57.464 29.630 6.32 2.19 0.00 1.90
3140 4598 8.880878 ATTATTATTTTTGAACCGGGCATAAC 57.119 30.769 6.32 0.00 0.00 1.89
3141 4599 3.603158 ATTTTTGAACCGGGCATAACC 57.397 42.857 6.32 0.00 37.93 2.85
3155 4613 5.977489 GGCATAACCCCTTTCCATTATAC 57.023 43.478 0.00 0.00 0.00 1.47
3156 4614 4.770531 GGCATAACCCCTTTCCATTATACC 59.229 45.833 0.00 0.00 0.00 2.73
3157 4615 4.770531 GCATAACCCCTTTCCATTATACCC 59.229 45.833 0.00 0.00 0.00 3.69
3158 4616 3.588210 AACCCCTTTCCATTATACCCG 57.412 47.619 0.00 0.00 0.00 5.28
3159 4617 1.144298 ACCCCTTTCCATTATACCCGC 59.856 52.381 0.00 0.00 0.00 6.13
3160 4618 1.144093 CCCCTTTCCATTATACCCGCA 59.856 52.381 0.00 0.00 0.00 5.69
3161 4619 2.225017 CCCCTTTCCATTATACCCGCAT 60.225 50.000 0.00 0.00 0.00 4.73
3162 4620 3.009695 CCCCTTTCCATTATACCCGCATA 59.990 47.826 0.00 0.00 0.00 3.14
3163 4621 4.507691 CCCCTTTCCATTATACCCGCATAA 60.508 45.833 0.00 0.00 0.00 1.90
3164 4622 4.457949 CCCTTTCCATTATACCCGCATAAC 59.542 45.833 0.00 0.00 0.00 1.89
3165 4623 5.067273 CCTTTCCATTATACCCGCATAACA 58.933 41.667 0.00 0.00 0.00 2.41
3166 4624 5.533154 CCTTTCCATTATACCCGCATAACAA 59.467 40.000 0.00 0.00 0.00 2.83
3167 4625 6.039941 CCTTTCCATTATACCCGCATAACAAA 59.960 38.462 0.00 0.00 0.00 2.83
3168 4626 7.406031 TTTCCATTATACCCGCATAACAAAA 57.594 32.000 0.00 0.00 0.00 2.44
3169 4627 7.406031 TTCCATTATACCCGCATAACAAAAA 57.594 32.000 0.00 0.00 0.00 1.94
3170 4628 7.589958 TCCATTATACCCGCATAACAAAAAT 57.410 32.000 0.00 0.00 0.00 1.82
3171 4629 8.693120 TCCATTATACCCGCATAACAAAAATA 57.307 30.769 0.00 0.00 0.00 1.40
3172 4630 8.569641 TCCATTATACCCGCATAACAAAAATAC 58.430 33.333 0.00 0.00 0.00 1.89
3173 4631 8.353684 CCATTATACCCGCATAACAAAAATACA 58.646 33.333 0.00 0.00 0.00 2.29
3174 4632 9.906660 CATTATACCCGCATAACAAAAATACAT 57.093 29.630 0.00 0.00 0.00 2.29
3176 4634 5.906113 ACCCGCATAACAAAAATACATCA 57.094 34.783 0.00 0.00 0.00 3.07
3177 4635 5.890334 ACCCGCATAACAAAAATACATCAG 58.110 37.500 0.00 0.00 0.00 2.90
3178 4636 5.417580 ACCCGCATAACAAAAATACATCAGT 59.582 36.000 0.00 0.00 0.00 3.41
3179 4637 6.071616 ACCCGCATAACAAAAATACATCAGTT 60.072 34.615 0.00 0.00 0.00 3.16
3180 4638 6.472163 CCCGCATAACAAAAATACATCAGTTC 59.528 38.462 0.00 0.00 0.00 3.01
3181 4639 7.026562 CCGCATAACAAAAATACATCAGTTCA 58.973 34.615 0.00 0.00 0.00 3.18
3182 4640 7.701924 CCGCATAACAAAAATACATCAGTTCAT 59.298 33.333 0.00 0.00 0.00 2.57
3183 4641 9.075519 CGCATAACAAAAATACATCAGTTCATT 57.924 29.630 0.00 0.00 0.00 2.57
3188 4646 9.814899 AACAAAAATACATCAGTTCATTTGACA 57.185 25.926 0.00 0.00 31.87 3.58
3189 4647 9.248291 ACAAAAATACATCAGTTCATTTGACAC 57.752 29.630 0.00 0.00 31.87 3.67
3190 4648 8.702438 CAAAAATACATCAGTTCATTTGACACC 58.298 33.333 0.00 0.00 30.35 4.16
3191 4649 7.523293 AAATACATCAGTTCATTTGACACCA 57.477 32.000 0.00 0.00 0.00 4.17
3192 4650 7.523293 AATACATCAGTTCATTTGACACCAA 57.477 32.000 0.00 0.00 0.00 3.67
3193 4651 5.443185 ACATCAGTTCATTTGACACCAAG 57.557 39.130 0.00 0.00 33.23 3.61
3194 4652 4.279169 ACATCAGTTCATTTGACACCAAGG 59.721 41.667 0.00 0.00 33.23 3.61
3195 4653 4.163441 TCAGTTCATTTGACACCAAGGA 57.837 40.909 0.00 0.00 33.23 3.36
3196 4654 4.531854 TCAGTTCATTTGACACCAAGGAA 58.468 39.130 0.00 0.00 33.23 3.36
3197 4655 4.952957 TCAGTTCATTTGACACCAAGGAAA 59.047 37.500 0.00 0.00 32.82 3.13
3198 4656 5.043248 CAGTTCATTTGACACCAAGGAAAC 58.957 41.667 0.00 0.00 32.82 2.78
3199 4657 4.099419 AGTTCATTTGACACCAAGGAAACC 59.901 41.667 0.00 0.00 32.82 3.27
3200 4658 3.909732 TCATTTGACACCAAGGAAACCT 58.090 40.909 0.00 0.00 33.23 3.50
3201 4659 5.055265 TCATTTGACACCAAGGAAACCTA 57.945 39.130 0.00 0.00 31.13 3.08
3202 4660 5.070001 TCATTTGACACCAAGGAAACCTAG 58.930 41.667 0.00 0.00 31.13 3.02
3203 4661 4.781775 TTTGACACCAAGGAAACCTAGA 57.218 40.909 0.00 0.00 31.13 2.43
3204 4662 4.781775 TTGACACCAAGGAAACCTAGAA 57.218 40.909 0.00 0.00 31.13 2.10
3205 4663 4.781775 TGACACCAAGGAAACCTAGAAA 57.218 40.909 0.00 0.00 31.13 2.52
3206 4664 4.714632 TGACACCAAGGAAACCTAGAAAG 58.285 43.478 0.00 0.00 31.13 2.62
3207 4665 7.362407 TTTGACACCAAGGAAACCTAGAAAGG 61.362 42.308 0.00 0.00 40.14 3.11
3217 4675 2.317530 CCTAGAAAGGGGAAAGCGAG 57.682 55.000 0.00 0.00 39.48 5.03
3218 4676 1.555533 CCTAGAAAGGGGAAAGCGAGT 59.444 52.381 0.00 0.00 39.48 4.18
3219 4677 2.027100 CCTAGAAAGGGGAAAGCGAGTT 60.027 50.000 0.00 0.00 39.48 3.01
3220 4678 2.186532 AGAAAGGGGAAAGCGAGTTC 57.813 50.000 0.00 0.00 0.00 3.01
3221 4679 1.420138 AGAAAGGGGAAAGCGAGTTCA 59.580 47.619 0.00 0.00 0.00 3.18
3222 4680 2.158667 AGAAAGGGGAAAGCGAGTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
3223 4681 2.586648 AAGGGGAAAGCGAGTTCAAT 57.413 45.000 0.00 0.00 0.00 2.57
3224 4682 1.826385 AGGGGAAAGCGAGTTCAATG 58.174 50.000 0.00 0.00 0.00 2.82
3225 4683 0.171231 GGGGAAAGCGAGTTCAATGC 59.829 55.000 0.00 0.00 0.00 3.56
3226 4684 0.881118 GGGAAAGCGAGTTCAATGCA 59.119 50.000 0.00 0.00 0.00 3.96
3227 4685 1.474077 GGGAAAGCGAGTTCAATGCAT 59.526 47.619 0.00 0.00 0.00 3.96
3228 4686 2.478539 GGGAAAGCGAGTTCAATGCATC 60.479 50.000 0.00 0.00 0.00 3.91
3229 4687 2.162208 GGAAAGCGAGTTCAATGCATCA 59.838 45.455 0.00 0.00 0.00 3.07
3230 4688 2.907910 AAGCGAGTTCAATGCATCAC 57.092 45.000 0.00 0.00 0.00 3.06
3231 4689 2.105006 AGCGAGTTCAATGCATCACT 57.895 45.000 0.00 2.43 0.00 3.41
3232 4690 1.736126 AGCGAGTTCAATGCATCACTG 59.264 47.619 0.00 0.00 0.00 3.66
3233 4691 1.202110 GCGAGTTCAATGCATCACTGG 60.202 52.381 0.00 5.53 0.00 4.00
3234 4692 2.349590 CGAGTTCAATGCATCACTGGA 58.650 47.619 0.00 0.00 0.00 3.86
3235 4693 2.743664 CGAGTTCAATGCATCACTGGAA 59.256 45.455 0.00 0.00 0.00 3.53
3236 4694 3.189080 CGAGTTCAATGCATCACTGGAAA 59.811 43.478 0.00 0.00 0.00 3.13
3237 4695 4.479619 GAGTTCAATGCATCACTGGAAAC 58.520 43.478 0.00 0.00 0.00 2.78
3238 4696 3.256631 AGTTCAATGCATCACTGGAAACC 59.743 43.478 0.00 0.00 0.00 3.27
3239 4697 2.170166 TCAATGCATCACTGGAAACCC 58.830 47.619 0.00 0.00 0.00 4.11
3240 4698 1.894466 CAATGCATCACTGGAAACCCA 59.106 47.619 0.00 0.00 0.00 4.51
3241 4699 1.549203 ATGCATCACTGGAAACCCAC 58.451 50.000 0.00 0.00 0.00 4.61
3242 4700 0.888736 TGCATCACTGGAAACCCACG 60.889 55.000 0.00 0.00 0.00 4.94
3243 4701 1.586154 GCATCACTGGAAACCCACGG 61.586 60.000 0.00 0.00 0.00 4.94
3244 4702 0.250727 CATCACTGGAAACCCACGGT 60.251 55.000 0.00 0.00 37.65 4.83
3245 4703 1.002659 CATCACTGGAAACCCACGGTA 59.997 52.381 0.00 0.00 33.12 4.02
3246 4704 1.129917 TCACTGGAAACCCACGGTAA 58.870 50.000 0.00 0.00 33.12 2.85
3247 4705 1.489649 TCACTGGAAACCCACGGTAAA 59.510 47.619 0.00 0.00 33.12 2.01
3248 4706 1.605232 CACTGGAAACCCACGGTAAAC 59.395 52.381 0.00 0.00 33.12 2.01
3249 4707 1.212441 ACTGGAAACCCACGGTAAACA 59.788 47.619 0.00 0.00 33.12 2.83
3250 4708 2.158579 ACTGGAAACCCACGGTAAACAT 60.159 45.455 0.00 0.00 33.12 2.71
3251 4709 3.072768 ACTGGAAACCCACGGTAAACATA 59.927 43.478 0.00 0.00 33.12 2.29
3252 4710 4.073549 CTGGAAACCCACGGTAAACATAA 58.926 43.478 0.00 0.00 33.12 1.90
3253 4711 3.819902 TGGAAACCCACGGTAAACATAAC 59.180 43.478 0.00 0.00 33.12 1.89
3254 4712 4.074259 GGAAACCCACGGTAAACATAACT 58.926 43.478 0.00 0.00 33.12 2.24
3255 4713 4.520111 GGAAACCCACGGTAAACATAACTT 59.480 41.667 0.00 0.00 33.12 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
588 602 6.362551 CCATCATGTGTAGCACGTACTTATAC 59.637 42.308 0.00 0.00 37.14 1.47
589 603 6.443792 CCATCATGTGTAGCACGTACTTATA 58.556 40.000 0.00 0.00 37.14 0.98
590 604 5.289595 CCATCATGTGTAGCACGTACTTAT 58.710 41.667 0.00 0.00 37.14 1.73
591 605 4.678622 CCATCATGTGTAGCACGTACTTA 58.321 43.478 0.00 0.00 37.14 2.24
592 606 3.521560 CCATCATGTGTAGCACGTACTT 58.478 45.455 0.00 0.00 37.14 2.24
593 607 2.738643 GCCATCATGTGTAGCACGTACT 60.739 50.000 0.00 0.00 37.14 2.73
594 608 1.593006 GCCATCATGTGTAGCACGTAC 59.407 52.381 0.00 0.00 37.14 3.67
595 609 1.205893 TGCCATCATGTGTAGCACGTA 59.794 47.619 0.00 0.00 37.14 3.57
596 610 0.036483 TGCCATCATGTGTAGCACGT 60.036 50.000 0.00 0.00 37.14 4.49
597 611 0.374758 GTGCCATCATGTGTAGCACG 59.625 55.000 13.93 0.00 43.70 5.34
599 613 1.556451 AGAGTGCCATCATGTGTAGCA 59.444 47.619 0.00 0.00 0.00 3.49
602 616 2.093500 GTGGAGAGTGCCATCATGTGTA 60.093 50.000 0.00 0.00 40.68 2.90
612 626 1.670406 CAGCTGTGTGGAGAGTGCC 60.670 63.158 5.25 0.00 0.00 5.01
631 645 1.017387 ATTGTTGGCGCTAGCTAAGC 58.983 50.000 13.93 8.90 44.50 3.09
632 646 2.009774 ACATTGTTGGCGCTAGCTAAG 58.990 47.619 13.93 0.00 44.50 2.18
633 647 1.737236 CACATTGTTGGCGCTAGCTAA 59.263 47.619 13.93 2.49 44.37 3.09
660 674 7.423844 ACTATATATAGTAGCCAGCAATGCA 57.576 36.000 21.46 0.00 41.55 3.96
673 687 6.402983 GCACCGTCGTTGCTACTATATATAGT 60.403 42.308 24.99 24.99 45.08 2.12
674 688 5.964168 GCACCGTCGTTGCTACTATATATAG 59.036 44.000 16.73 16.73 36.46 1.31
675 689 5.645067 AGCACCGTCGTTGCTACTATATATA 59.355 40.000 16.27 0.00 37.11 0.86
676 690 4.458295 AGCACCGTCGTTGCTACTATATAT 59.542 41.667 16.27 0.00 37.11 0.86
677 691 3.817084 AGCACCGTCGTTGCTACTATATA 59.183 43.478 16.27 0.00 37.11 0.86
678 692 2.621998 AGCACCGTCGTTGCTACTATAT 59.378 45.455 16.27 0.00 37.11 0.86
698 712 1.307355 TGCACCACATGAATGGCGAG 61.307 55.000 0.00 0.00 44.33 5.03
701 715 1.965990 TGTGCACCACATGAATGGC 59.034 52.632 15.69 0.00 44.33 4.40
735 749 3.510360 TGTAGGAGAAACTCTCTTTCGGG 59.490 47.826 3.81 0.00 42.95 5.14
781 795 1.299648 CAAGTTGCCGAGGATGGGA 59.700 57.895 0.00 0.00 35.02 4.37
800 814 1.664965 GCGGCCCGATGACATAGAC 60.665 63.158 7.68 0.00 0.00 2.59
848 862 1.607612 CATAGGTTTGGGCGAGGGT 59.392 57.895 0.00 0.00 0.00 4.34
856 870 0.909623 AGACGGGTCCATAGGTTTGG 59.090 55.000 0.00 0.00 38.18 3.28
872 886 2.101082 GACCAAGACGGAGGGATAAGAC 59.899 54.545 0.00 0.00 38.63 3.01
877 891 0.041238 TCAGACCAAGACGGAGGGAT 59.959 55.000 0.00 0.00 38.63 3.85
903 917 0.108804 GGATGACACCACGACGATGT 60.109 55.000 0.00 2.60 0.00 3.06
993 1008 1.067416 GCCGTATGACATGGAGCGA 59.933 57.895 0.00 0.00 34.93 4.93
997 1012 1.142965 CCGTGCCGTATGACATGGA 59.857 57.895 3.47 0.00 44.32 3.41
1005 1020 1.597854 CATGGATGCCGTGCCGTAT 60.598 57.895 0.00 0.00 33.52 3.06
1015 1030 1.064463 TGGAAGGAAGACCATGGATGC 60.064 52.381 21.47 9.51 38.94 3.91
1017 1032 2.357569 GCTTGGAAGGAAGACCATGGAT 60.358 50.000 21.47 3.12 38.94 3.41
1175 1190 1.142667 TGATTATGATCGGCCTGCCAA 59.857 47.619 9.17 0.00 34.91 4.52
1186 1201 1.349026 CACGGCCTCCCTGATTATGAT 59.651 52.381 0.00 0.00 0.00 2.45
1389 1404 1.417517 AGATGTATGGAGATGCGGCAA 59.582 47.619 6.82 0.00 0.00 4.52
1390 1405 1.001293 GAGATGTATGGAGATGCGGCA 59.999 52.381 4.58 4.58 0.00 5.69
1478 1493 1.261619 CGTTGTTCTTCTCACTGCCAC 59.738 52.381 0.00 0.00 0.00 5.01
1572 1590 5.511234 AGTACTCAATGGATGTACGTACC 57.489 43.478 22.43 8.46 40.77 3.34
1581 1599 4.338879 AGCAAAGCAAGTACTCAATGGAT 58.661 39.130 0.00 0.00 0.00 3.41
1583 1601 4.510038 AAGCAAAGCAAGTACTCAATGG 57.490 40.909 0.00 0.00 0.00 3.16
1669 1687 4.043200 GTCACTTGCGGGCCTTGC 62.043 66.667 12.81 12.81 0.00 4.01
1670 1688 2.594303 TGTCACTTGCGGGCCTTG 60.594 61.111 0.84 0.00 0.00 3.61
1671 1689 2.594592 GTGTCACTTGCGGGCCTT 60.595 61.111 0.84 0.00 0.00 4.35
1672 1690 4.988598 CGTGTCACTTGCGGGCCT 62.989 66.667 0.84 0.00 0.00 5.19
1673 1691 4.980805 TCGTGTCACTTGCGGGCC 62.981 66.667 0.00 0.00 0.00 5.80
1674 1692 3.414700 CTCGTGTCACTTGCGGGC 61.415 66.667 0.65 0.00 0.00 6.13
1675 1693 3.414700 GCTCGTGTCACTTGCGGG 61.415 66.667 0.65 0.00 0.00 6.13
1701 1719 2.273449 GCCATAGCCCACTGCACT 59.727 61.111 0.00 0.00 44.83 4.40
1740 1758 3.181530 CGTTACGCACCTTCTTCATCTTG 60.182 47.826 0.00 0.00 0.00 3.02
1881 1900 1.068741 GCTACCTCCCGTGGTATCAAG 59.931 57.143 0.00 0.00 41.24 3.02
1899 1918 4.057428 GACACTCCGTCGGCAGCT 62.057 66.667 6.34 0.00 34.19 4.24
1950 1969 1.374560 CCCACAAGTTGACAACGACA 58.625 50.000 10.54 0.00 36.23 4.35
1956 1975 0.950836 CGATTGCCCACAAGTTGACA 59.049 50.000 10.54 0.00 39.69 3.58
1989 2008 2.684001 TGTTAGGTTGAGGCCATACG 57.316 50.000 5.01 0.00 0.00 3.06
2010 2029 3.070015 CCAAGAACCTTTCAGGCACAAAT 59.930 43.478 0.00 0.00 39.63 2.32
2146 2167 3.074999 GCGAGGCTAGCAGCAGAGT 62.075 63.158 18.24 0.00 44.75 3.24
2163 2184 2.227388 CCATTCTGTTCTGTGGACAAGC 59.773 50.000 0.00 0.00 33.53 4.01
2174 2195 5.355596 CATCAGGTAGTCTCCATTCTGTTC 58.644 45.833 0.00 0.00 0.00 3.18
2205 2226 3.917072 GAGGTCAATATCCTCGGGC 57.083 57.895 0.00 0.00 41.36 6.13
2224 2245 1.227380 CAGTGCCATAGCGGTCCTC 60.227 63.158 0.00 0.00 44.31 3.71
2311 2332 5.934625 AGAAATATGTCGGCAGATAATGGTC 59.065 40.000 0.00 0.00 0.00 4.02
2419 3796 8.508062 CCTCGCAGGCTAGTATATAACTATATG 58.492 40.741 0.00 0.00 39.96 1.78
2463 3846 3.619733 CGAGGAGACAATTGGTGGAATCA 60.620 47.826 10.83 0.00 0.00 2.57
2526 3909 5.052693 TGATTTCCCTATCCAGGACATTG 57.947 43.478 0.00 0.00 45.91 2.82
2601 3984 8.610896 GTGGCAGATAATAGCATCTCAATAATC 58.389 37.037 0.00 0.00 32.83 1.75
2694 4115 8.200120 CCTGGGAAATATTCAATTTTCTCTTCC 58.800 37.037 0.00 0.00 34.18 3.46
2700 4121 6.051074 CCTGCCTGGGAAATATTCAATTTTC 58.949 40.000 0.00 0.00 0.00 2.29
2764 4212 6.901887 CGTGATCGAAAAAGATGGTGAAATAG 59.098 38.462 0.00 0.00 39.71 1.73
2765 4213 6.370442 ACGTGATCGAAAAAGATGGTGAAATA 59.630 34.615 0.00 0.00 40.62 1.40
2788 4236 1.340658 CATCTCTCGTTGTCACCACG 58.659 55.000 0.00 0.00 0.00 4.94
2842 4290 9.793259 TGTCACCAAGAATCTATACTTTTCTTT 57.207 29.630 0.00 0.00 37.55 2.52
2843 4291 9.793259 TTGTCACCAAGAATCTATACTTTTCTT 57.207 29.630 0.00 0.00 39.61 2.52
2853 4301 6.338146 CCGAACTATTGTCACCAAGAATCTA 58.662 40.000 0.00 0.00 33.17 1.98
2959 4408 3.626028 AAGCAAACTCCAAGCTAAACG 57.374 42.857 0.00 0.00 37.70 3.60
3015 4464 3.609853 GGAAGCACACATGTTCCAGATA 58.390 45.455 8.38 0.00 36.65 1.98
3088 4546 9.098355 TCAAGTTATGTGCATACTAATTGTCTC 57.902 33.333 0.00 0.00 0.00 3.36
3117 4575 6.807789 GGTTATGCCCGGTTCAAAAATAATA 58.192 36.000 0.00 0.00 0.00 0.98
3118 4576 5.666462 GGTTATGCCCGGTTCAAAAATAAT 58.334 37.500 0.00 0.00 0.00 1.28
3120 4578 4.722361 GGTTATGCCCGGTTCAAAAATA 57.278 40.909 0.00 0.00 0.00 1.40
3133 4591 4.770531 GGTATAATGGAAAGGGGTTATGCC 59.229 45.833 0.00 0.00 0.00 4.40
3134 4592 4.770531 GGGTATAATGGAAAGGGGTTATGC 59.229 45.833 0.00 0.00 0.00 3.14
3135 4593 5.007682 CGGGTATAATGGAAAGGGGTTATG 58.992 45.833 0.00 0.00 0.00 1.90
3136 4594 4.507869 GCGGGTATAATGGAAAGGGGTTAT 60.508 45.833 0.00 0.00 0.00 1.89
3137 4595 3.181441 GCGGGTATAATGGAAAGGGGTTA 60.181 47.826 0.00 0.00 0.00 2.85
3138 4596 2.423803 GCGGGTATAATGGAAAGGGGTT 60.424 50.000 0.00 0.00 0.00 4.11
3139 4597 1.144298 GCGGGTATAATGGAAAGGGGT 59.856 52.381 0.00 0.00 0.00 4.95
3140 4598 1.144093 TGCGGGTATAATGGAAAGGGG 59.856 52.381 0.00 0.00 0.00 4.79
3141 4599 2.649531 TGCGGGTATAATGGAAAGGG 57.350 50.000 0.00 0.00 0.00 3.95
3142 4600 5.067273 TGTTATGCGGGTATAATGGAAAGG 58.933 41.667 0.00 0.00 0.00 3.11
3143 4601 6.627395 TTGTTATGCGGGTATAATGGAAAG 57.373 37.500 0.00 0.00 0.00 2.62
3144 4602 7.406031 TTTTGTTATGCGGGTATAATGGAAA 57.594 32.000 0.00 0.00 0.00 3.13
3145 4603 7.406031 TTTTTGTTATGCGGGTATAATGGAA 57.594 32.000 0.00 0.00 0.00 3.53
3146 4604 7.589958 ATTTTTGTTATGCGGGTATAATGGA 57.410 32.000 0.00 0.00 0.00 3.41
3147 4605 8.353684 TGTATTTTTGTTATGCGGGTATAATGG 58.646 33.333 0.00 0.00 0.00 3.16
3148 4606 9.906660 ATGTATTTTTGTTATGCGGGTATAATG 57.093 29.630 0.00 0.00 0.00 1.90
3150 4608 9.121658 TGATGTATTTTTGTTATGCGGGTATAA 57.878 29.630 0.00 0.00 0.00 0.98
3151 4609 8.678593 TGATGTATTTTTGTTATGCGGGTATA 57.321 30.769 0.00 0.00 0.00 1.47
3152 4610 7.284489 ACTGATGTATTTTTGTTATGCGGGTAT 59.716 33.333 0.00 0.00 0.00 2.73
3153 4611 6.600032 ACTGATGTATTTTTGTTATGCGGGTA 59.400 34.615 0.00 0.00 0.00 3.69
3154 4612 5.417580 ACTGATGTATTTTTGTTATGCGGGT 59.582 36.000 0.00 0.00 0.00 5.28
3155 4613 5.890334 ACTGATGTATTTTTGTTATGCGGG 58.110 37.500 0.00 0.00 0.00 6.13
3156 4614 7.026562 TGAACTGATGTATTTTTGTTATGCGG 58.973 34.615 0.00 0.00 0.00 5.69
3157 4615 8.619146 ATGAACTGATGTATTTTTGTTATGCG 57.381 30.769 0.00 0.00 0.00 4.73
3162 4620 9.814899 TGTCAAATGAACTGATGTATTTTTGTT 57.185 25.926 0.00 0.00 0.00 2.83
3163 4621 9.248291 GTGTCAAATGAACTGATGTATTTTTGT 57.752 29.630 0.00 0.00 0.00 2.83
3164 4622 8.702438 GGTGTCAAATGAACTGATGTATTTTTG 58.298 33.333 0.00 0.00 0.00 2.44
3165 4623 8.420222 TGGTGTCAAATGAACTGATGTATTTTT 58.580 29.630 0.00 0.00 0.00 1.94
3166 4624 7.950512 TGGTGTCAAATGAACTGATGTATTTT 58.049 30.769 0.00 0.00 0.00 1.82
3167 4625 7.523293 TGGTGTCAAATGAACTGATGTATTT 57.477 32.000 0.00 0.00 0.00 1.40
3168 4626 7.309377 CCTTGGTGTCAAATGAACTGATGTATT 60.309 37.037 0.00 0.00 31.77 1.89
3169 4627 6.151648 CCTTGGTGTCAAATGAACTGATGTAT 59.848 38.462 0.00 0.00 31.77 2.29
3170 4628 5.473162 CCTTGGTGTCAAATGAACTGATGTA 59.527 40.000 0.00 0.00 31.77 2.29
3171 4629 4.279169 CCTTGGTGTCAAATGAACTGATGT 59.721 41.667 0.00 0.00 31.77 3.06
3172 4630 4.520111 TCCTTGGTGTCAAATGAACTGATG 59.480 41.667 0.00 0.00 31.77 3.07
3173 4631 4.728772 TCCTTGGTGTCAAATGAACTGAT 58.271 39.130 0.00 0.00 31.77 2.90
3174 4632 4.163441 TCCTTGGTGTCAAATGAACTGA 57.837 40.909 0.00 0.00 31.77 3.41
3175 4633 4.916983 TTCCTTGGTGTCAAATGAACTG 57.083 40.909 0.00 0.00 31.77 3.16
3176 4634 4.099419 GGTTTCCTTGGTGTCAAATGAACT 59.901 41.667 0.00 0.00 31.77 3.01
3177 4635 4.099419 AGGTTTCCTTGGTGTCAAATGAAC 59.901 41.667 0.00 0.00 31.77 3.18
3178 4636 4.285863 AGGTTTCCTTGGTGTCAAATGAA 58.714 39.130 0.00 0.00 31.77 2.57
3179 4637 3.909732 AGGTTTCCTTGGTGTCAAATGA 58.090 40.909 0.00 0.00 31.77 2.57
3180 4638 5.070001 TCTAGGTTTCCTTGGTGTCAAATG 58.930 41.667 0.00 0.00 34.61 2.32
3181 4639 5.319043 TCTAGGTTTCCTTGGTGTCAAAT 57.681 39.130 0.00 0.00 34.61 2.32
3182 4640 4.781775 TCTAGGTTTCCTTGGTGTCAAA 57.218 40.909 0.00 0.00 34.61 2.69
3183 4641 4.781775 TTCTAGGTTTCCTTGGTGTCAA 57.218 40.909 0.00 0.00 34.61 3.18
3184 4642 4.445735 CCTTTCTAGGTTTCCTTGGTGTCA 60.446 45.833 0.00 0.00 36.74 3.58
3185 4643 4.072839 CCTTTCTAGGTTTCCTTGGTGTC 58.927 47.826 0.00 0.00 36.74 3.67
3186 4644 3.181433 CCCTTTCTAGGTTTCCTTGGTGT 60.181 47.826 0.00 0.00 40.19 4.16
3187 4645 3.421844 CCCTTTCTAGGTTTCCTTGGTG 58.578 50.000 0.00 0.00 40.19 4.17
3188 4646 2.378886 CCCCTTTCTAGGTTTCCTTGGT 59.621 50.000 0.00 0.00 40.19 3.67
3189 4647 2.647802 TCCCCTTTCTAGGTTTCCTTGG 59.352 50.000 0.00 0.00 40.19 3.61
3190 4648 4.382386 TTCCCCTTTCTAGGTTTCCTTG 57.618 45.455 0.00 0.00 40.19 3.61
3191 4649 4.753217 GCTTTCCCCTTTCTAGGTTTCCTT 60.753 45.833 0.00 0.00 40.19 3.36
3192 4650 3.245300 GCTTTCCCCTTTCTAGGTTTCCT 60.245 47.826 0.00 0.00 40.19 3.36
3193 4651 3.090037 GCTTTCCCCTTTCTAGGTTTCC 58.910 50.000 0.00 0.00 40.19 3.13
3194 4652 2.747989 CGCTTTCCCCTTTCTAGGTTTC 59.252 50.000 0.00 0.00 40.19 2.78
3195 4653 2.374170 TCGCTTTCCCCTTTCTAGGTTT 59.626 45.455 0.00 0.00 40.19 3.27
3196 4654 1.982958 TCGCTTTCCCCTTTCTAGGTT 59.017 47.619 0.00 0.00 40.19 3.50
3197 4655 1.555533 CTCGCTTTCCCCTTTCTAGGT 59.444 52.381 0.00 0.00 40.19 3.08
3198 4656 1.555533 ACTCGCTTTCCCCTTTCTAGG 59.444 52.381 0.00 0.00 41.60 3.02
3199 4657 3.263261 GAACTCGCTTTCCCCTTTCTAG 58.737 50.000 0.00 0.00 0.00 2.43
3200 4658 2.635915 TGAACTCGCTTTCCCCTTTCTA 59.364 45.455 0.00 0.00 0.00 2.10
3201 4659 1.420138 TGAACTCGCTTTCCCCTTTCT 59.580 47.619 0.00 0.00 0.00 2.52
3202 4660 1.892209 TGAACTCGCTTTCCCCTTTC 58.108 50.000 0.00 0.00 0.00 2.62
3203 4661 2.358322 TTGAACTCGCTTTCCCCTTT 57.642 45.000 0.00 0.00 0.00 3.11
3204 4662 2.162681 CATTGAACTCGCTTTCCCCTT 58.837 47.619 0.00 0.00 0.00 3.95
3205 4663 1.826385 CATTGAACTCGCTTTCCCCT 58.174 50.000 0.00 0.00 0.00 4.79
3206 4664 0.171231 GCATTGAACTCGCTTTCCCC 59.829 55.000 0.00 0.00 0.00 4.81
3207 4665 0.881118 TGCATTGAACTCGCTTTCCC 59.119 50.000 0.00 0.00 0.00 3.97
3208 4666 2.162208 TGATGCATTGAACTCGCTTTCC 59.838 45.455 0.00 0.00 0.00 3.13
3209 4667 3.120060 AGTGATGCATTGAACTCGCTTTC 60.120 43.478 0.00 0.00 0.00 2.62
3210 4668 2.816087 AGTGATGCATTGAACTCGCTTT 59.184 40.909 0.00 0.00 0.00 3.51
3211 4669 2.161012 CAGTGATGCATTGAACTCGCTT 59.839 45.455 0.00 0.00 0.00 4.68
3212 4670 1.736126 CAGTGATGCATTGAACTCGCT 59.264 47.619 0.00 0.00 0.00 4.93
3213 4671 1.202110 CCAGTGATGCATTGAACTCGC 60.202 52.381 0.00 0.00 0.00 5.03
3214 4672 2.349590 TCCAGTGATGCATTGAACTCG 58.650 47.619 0.00 0.00 0.00 4.18
3215 4673 4.479619 GTTTCCAGTGATGCATTGAACTC 58.520 43.478 0.00 0.00 0.00 3.01
3216 4674 3.256631 GGTTTCCAGTGATGCATTGAACT 59.743 43.478 0.00 2.56 0.00 3.01
3217 4675 3.578688 GGTTTCCAGTGATGCATTGAAC 58.421 45.455 0.00 0.00 0.00 3.18
3218 4676 2.562298 GGGTTTCCAGTGATGCATTGAA 59.438 45.455 0.00 0.00 0.00 2.69
3219 4677 2.170166 GGGTTTCCAGTGATGCATTGA 58.830 47.619 0.00 0.00 0.00 2.57
3220 4678 1.894466 TGGGTTTCCAGTGATGCATTG 59.106 47.619 0.00 0.00 38.32 2.82
3221 4679 1.895131 GTGGGTTTCCAGTGATGCATT 59.105 47.619 0.00 0.00 45.05 3.56
3222 4680 1.549203 GTGGGTTTCCAGTGATGCAT 58.451 50.000 0.00 0.00 45.05 3.96
3223 4681 0.888736 CGTGGGTTTCCAGTGATGCA 60.889 55.000 0.00 0.00 45.05 3.96
3224 4682 1.586154 CCGTGGGTTTCCAGTGATGC 61.586 60.000 0.00 0.00 45.05 3.91
3225 4683 0.250727 ACCGTGGGTTTCCAGTGATG 60.251 55.000 0.00 0.00 45.05 3.07
3226 4684 1.354101 TACCGTGGGTTTCCAGTGAT 58.646 50.000 0.00 0.00 45.05 3.06
3227 4685 1.129917 TTACCGTGGGTTTCCAGTGA 58.870 50.000 0.00 0.00 45.05 3.41
3228 4686 1.605232 GTTTACCGTGGGTTTCCAGTG 59.395 52.381 0.00 0.00 45.05 3.66
3229 4687 1.212441 TGTTTACCGTGGGTTTCCAGT 59.788 47.619 0.00 0.00 45.05 4.00
3230 4688 1.970092 TGTTTACCGTGGGTTTCCAG 58.030 50.000 0.00 0.00 45.05 3.86
3231 4689 2.660670 ATGTTTACCGTGGGTTTCCA 57.339 45.000 0.00 0.00 41.58 3.53
3232 4690 4.074259 AGTTATGTTTACCGTGGGTTTCC 58.926 43.478 0.00 0.00 37.09 3.13
3233 4691 5.694231 AAGTTATGTTTACCGTGGGTTTC 57.306 39.130 0.00 0.00 37.09 2.78
3234 4692 5.593502 TGAAAGTTATGTTTACCGTGGGTTT 59.406 36.000 0.00 0.00 37.09 3.27
3235 4693 5.008911 GTGAAAGTTATGTTTACCGTGGGTT 59.991 40.000 0.00 0.00 37.09 4.11
3236 4694 4.516321 GTGAAAGTTATGTTTACCGTGGGT 59.484 41.667 0.00 0.00 40.16 4.51
3237 4695 4.083164 GGTGAAAGTTATGTTTACCGTGGG 60.083 45.833 0.00 0.00 0.00 4.61
3238 4696 4.083164 GGGTGAAAGTTATGTTTACCGTGG 60.083 45.833 0.00 0.00 0.00 4.94
3239 4697 4.083164 GGGGTGAAAGTTATGTTTACCGTG 60.083 45.833 0.00 0.00 0.00 4.94
3240 4698 4.074259 GGGGTGAAAGTTATGTTTACCGT 58.926 43.478 0.00 0.00 0.00 4.83
3241 4699 3.125658 CGGGGTGAAAGTTATGTTTACCG 59.874 47.826 0.00 0.00 0.00 4.02
3242 4700 3.119743 GCGGGGTGAAAGTTATGTTTACC 60.120 47.826 0.00 0.00 0.00 2.85
3243 4701 3.502979 TGCGGGGTGAAAGTTATGTTTAC 59.497 43.478 0.00 0.00 0.00 2.01
3244 4702 3.752665 TGCGGGGTGAAAGTTATGTTTA 58.247 40.909 0.00 0.00 0.00 2.01
3245 4703 2.588620 TGCGGGGTGAAAGTTATGTTT 58.411 42.857 0.00 0.00 0.00 2.83
3246 4704 2.279935 TGCGGGGTGAAAGTTATGTT 57.720 45.000 0.00 0.00 0.00 2.71
3247 4705 2.279935 TTGCGGGGTGAAAGTTATGT 57.720 45.000 0.00 0.00 0.00 2.29
3248 4706 3.651803 TTTTGCGGGGTGAAAGTTATG 57.348 42.857 0.00 0.00 0.00 1.90
3249 4707 3.892588 TCTTTTTGCGGGGTGAAAGTTAT 59.107 39.130 0.00 0.00 32.43 1.89
3250 4708 3.288964 TCTTTTTGCGGGGTGAAAGTTA 58.711 40.909 0.00 0.00 32.43 2.24
3251 4709 2.104170 TCTTTTTGCGGGGTGAAAGTT 58.896 42.857 0.00 0.00 32.43 2.66
3252 4710 1.770294 TCTTTTTGCGGGGTGAAAGT 58.230 45.000 0.00 0.00 32.43 2.66
3253 4711 2.100749 AGTTCTTTTTGCGGGGTGAAAG 59.899 45.455 0.00 0.00 0.00 2.62
3254 4712 2.104170 AGTTCTTTTTGCGGGGTGAAA 58.896 42.857 0.00 0.00 0.00 2.69
3255 4713 1.770294 AGTTCTTTTTGCGGGGTGAA 58.230 45.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.