Multiple sequence alignment - TraesCS2A01G005700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G005700 chr2A 100.000 4115 0 0 1 4115 2724741 2728855 0.000000e+00 7600.0
1 TraesCS2A01G005700 chr2A 93.294 343 19 2 609 951 27651068 27650730 1.710000e-138 503.0
2 TraesCS2A01G005700 chr2B 94.071 2277 112 7 941 3198 7836994 7839266 0.000000e+00 3435.0
3 TraesCS2A01G005700 chr2B 89.401 2038 173 22 1040 3051 8227629 8225609 0.000000e+00 2527.0
4 TraesCS2A01G005700 chr2B 89.308 2039 174 21 1040 3051 8071875 8069854 0.000000e+00 2518.0
5 TraesCS2A01G005700 chr2B 89.141 1980 165 23 1029 2986 7902667 7900716 0.000000e+00 2420.0
6 TraesCS2A01G005700 chr2B 95.242 1324 52 3 941 2254 7761771 7763093 0.000000e+00 2085.0
7 TraesCS2A01G005700 chr2B 95.799 1214 47 2 2295 3504 7763091 7764304 0.000000e+00 1956.0
8 TraesCS2A01G005700 chr2B 91.858 872 57 6 3194 4052 7841117 7841987 0.000000e+00 1205.0
9 TraesCS2A01G005700 chr2B 96.964 494 15 0 118 611 7761278 7761771 0.000000e+00 830.0
10 TraesCS2A01G005700 chr2B 95.749 494 21 0 118 611 7836501 7836994 0.000000e+00 797.0
11 TraesCS2A01G005700 chr2B 97.674 129 2 1 1 128 7836333 7836461 1.930000e-53 220.0
12 TraesCS2A01G005700 chr2B 81.203 133 23 2 3068 3198 8069665 8069533 5.630000e-19 106.0
13 TraesCS2A01G005700 chr2B 80.916 131 23 2 3068 3196 8225420 8225290 7.280000e-18 102.0
14 TraesCS2A01G005700 chr2B 92.308 52 3 1 77 128 7761188 7761238 5.710000e-09 73.1
15 TraesCS2A01G005700 chr2B 97.500 40 0 1 1 39 7700440 7700479 2.650000e-07 67.6
16 TraesCS2A01G005700 chr2B 97.436 39 1 0 55 93 7700470 7700508 2.650000e-07 67.6
17 TraesCS2A01G005700 chr2D 95.820 1938 65 5 1033 2960 2949047 2947116 0.000000e+00 3116.0
18 TraesCS2A01G005700 chr2D 93.421 380 24 1 121 500 2949773 2949395 2.780000e-156 562.0
19 TraesCS2A01G005700 chr2D 93.798 129 6 2 1 128 2949943 2949816 4.200000e-45 193.0
20 TraesCS2A01G005700 chr2D 95.536 112 5 0 499 610 2949281 2949170 3.270000e-41 180.0
21 TraesCS2A01G005700 chr3D 78.920 1518 242 41 1450 2941 606940935 606942400 0.000000e+00 959.0
22 TraesCS2A01G005700 chr3D 93.878 98 6 0 3955 4052 357797566 357797469 9.220000e-32 148.0
23 TraesCS2A01G005700 chr5D 77.087 1222 225 30 1637 2830 371862283 371863477 0.000000e+00 654.0
24 TraesCS2A01G005700 chr5D 94.311 334 16 1 609 942 35155175 35154845 3.670000e-140 508.0
25 TraesCS2A01G005700 chr5D 92.582 337 24 1 3779 4115 398204643 398204978 2.220000e-132 483.0
26 TraesCS2A01G005700 chr5A 76.596 1222 231 31 1637 2830 475295016 475296210 4.520000e-174 621.0
27 TraesCS2A01G005700 chr5A 92.733 344 22 1 607 950 566553028 566553368 1.030000e-135 494.0
28 TraesCS2A01G005700 chr5B 76.036 1206 221 39 1644 2830 441745050 441746206 7.720000e-157 564.0
29 TraesCS2A01G005700 chr7D 95.195 333 13 1 609 941 548476574 548476245 1.310000e-144 523.0
30 TraesCS2A01G005700 chr7D 94.277 332 15 2 610 941 562059663 562059990 4.750000e-139 505.0
31 TraesCS2A01G005700 chr7D 93.023 344 18 4 609 952 116884469 116884806 7.940000e-137 497.0
32 TraesCS2A01G005700 chr7D 73.950 595 119 26 1607 2178 477855753 477856334 1.500000e-49 207.0
33 TraesCS2A01G005700 chr1D 94.362 337 14 3 607 942 131289266 131288934 2.840000e-141 512.0
34 TraesCS2A01G005700 chr7A 94.277 332 16 1 610 941 35382327 35382655 4.750000e-139 505.0
35 TraesCS2A01G005700 chr7A 93.750 336 18 1 606 941 521210688 521211020 6.140000e-138 501.0
36 TraesCS2A01G005700 chr4B 100.000 28 0 0 88 115 50731974 50731947 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G005700 chr2A 2724741 2728855 4114 False 7600.000 7600 100.00000 1 4115 1 chr2A.!!$F1 4114
1 TraesCS2A01G005700 chr2B 7900716 7902667 1951 True 2420.000 2420 89.14100 1029 2986 1 chr2B.!!$R1 1957
2 TraesCS2A01G005700 chr2B 7836333 7841987 5654 False 1414.250 3435 94.83800 1 4052 4 chr2B.!!$F3 4051
3 TraesCS2A01G005700 chr2B 8225290 8227629 2339 True 1314.500 2527 85.15850 1040 3196 2 chr2B.!!$R3 2156
4 TraesCS2A01G005700 chr2B 8069533 8071875 2342 True 1312.000 2518 85.25550 1040 3198 2 chr2B.!!$R2 2158
5 TraesCS2A01G005700 chr2B 7761188 7764304 3116 False 1236.025 2085 95.07825 77 3504 4 chr2B.!!$F2 3427
6 TraesCS2A01G005700 chr2D 2947116 2949943 2827 True 1012.750 3116 94.64375 1 2960 4 chr2D.!!$R1 2959
7 TraesCS2A01G005700 chr3D 606940935 606942400 1465 False 959.000 959 78.92000 1450 2941 1 chr3D.!!$F1 1491
8 TraesCS2A01G005700 chr5D 371862283 371863477 1194 False 654.000 654 77.08700 1637 2830 1 chr5D.!!$F1 1193
9 TraesCS2A01G005700 chr5A 475295016 475296210 1194 False 621.000 621 76.59600 1637 2830 1 chr5A.!!$F1 1193
10 TraesCS2A01G005700 chr5B 441745050 441746206 1156 False 564.000 564 76.03600 1644 2830 1 chr5B.!!$F1 1186
11 TraesCS2A01G005700 chr7D 477855753 477856334 581 False 207.000 207 73.95000 1607 2178 1 chr7D.!!$F2 571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 940 0.027586 AACACGCTTTGACTCAACGC 59.972 50.0 9.66 9.66 35.69 4.84 F
1543 1745 0.322816 GCTTCCTCCAATGCCTCACA 60.323 55.0 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 2508 0.526211 CTCGGAAGACGGACATGTCA 59.474 55.000 26.47 2.47 44.45 3.58 R
3457 5754 1.402259 TGTGCCGTTTTTGAATCACGT 59.598 42.857 0.00 0.00 31.83 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 209 2.191802 CTGAGTCTCGTGTGATCATGC 58.808 52.381 0.00 0.00 0.00 4.06
210 262 4.783227 GGGATAAGGATATTGGGCTACTGA 59.217 45.833 0.00 0.00 0.00 3.41
276 328 4.774726 TGTTTGGGCTAAATGCTTGGATAA 59.225 37.500 0.00 0.00 42.39 1.75
455 507 8.301720 TCAAATACCACATCGTGTACTATATCC 58.698 37.037 0.00 0.00 0.00 2.59
465 517 6.473758 TCGTGTACTATATCCTAGTCATGCT 58.526 40.000 0.00 0.00 0.00 3.79
562 729 2.761767 CCATCTTGGCCATCAAATCACA 59.238 45.455 6.09 0.00 34.56 3.58
610 777 8.865090 TCCAATATTGAACACCAAACACTTTAT 58.135 29.630 17.23 0.00 38.43 1.40
611 778 9.139174 CCAATATTGAACACCAAACACTTTATC 57.861 33.333 17.23 0.00 38.43 1.75
612 779 9.912634 CAATATTGAACACCAAACACTTTATCT 57.087 29.630 10.04 0.00 38.43 1.98
617 784 9.787435 TTGAACACCAAACACTTTATCTATACT 57.213 29.630 0.00 0.00 0.00 2.12
641 808 9.474313 ACTAATATAAAAAGACTCAAATGGGCA 57.526 29.630 0.00 0.00 0.00 5.36
642 809 9.956720 CTAATATAAAAAGACTCAAATGGGCAG 57.043 33.333 0.00 0.00 0.00 4.85
643 810 8.593945 AATATAAAAAGACTCAAATGGGCAGA 57.406 30.769 0.00 0.00 0.00 4.26
644 811 8.773033 ATATAAAAAGACTCAAATGGGCAGAT 57.227 30.769 0.00 0.00 0.00 2.90
645 812 5.397142 AAAAAGACTCAAATGGGCAGATC 57.603 39.130 0.00 0.00 0.00 2.75
646 813 2.725221 AGACTCAAATGGGCAGATCC 57.275 50.000 0.00 0.00 0.00 3.36
647 814 1.918262 AGACTCAAATGGGCAGATCCA 59.082 47.619 0.00 0.00 41.60 3.41
648 815 2.309755 AGACTCAAATGGGCAGATCCAA 59.690 45.455 0.00 0.00 40.62 3.53
649 816 3.091545 GACTCAAATGGGCAGATCCAAA 58.908 45.455 0.00 0.00 40.62 3.28
650 817 2.827921 ACTCAAATGGGCAGATCCAAAC 59.172 45.455 0.00 0.00 40.62 2.93
651 818 2.167075 CTCAAATGGGCAGATCCAAACC 59.833 50.000 0.00 0.00 40.62 3.27
652 819 1.901159 CAAATGGGCAGATCCAAACCA 59.099 47.619 0.00 0.00 40.62 3.67
653 820 2.502538 CAAATGGGCAGATCCAAACCAT 59.497 45.455 3.70 3.70 43.39 3.55
654 821 2.077687 ATGGGCAGATCCAAACCATC 57.922 50.000 3.70 0.00 37.35 3.51
655 822 1.002069 TGGGCAGATCCAAACCATCT 58.998 50.000 0.00 0.00 36.21 2.90
656 823 1.064463 TGGGCAGATCCAAACCATCTC 60.064 52.381 0.00 0.00 36.21 2.75
657 824 1.303309 GGCAGATCCAAACCATCTCG 58.697 55.000 0.00 0.00 34.01 4.04
658 825 1.134401 GGCAGATCCAAACCATCTCGA 60.134 52.381 0.00 0.00 34.01 4.04
659 826 2.486191 GGCAGATCCAAACCATCTCGAT 60.486 50.000 0.00 0.00 34.01 3.59
660 827 2.805099 GCAGATCCAAACCATCTCGATC 59.195 50.000 0.00 0.00 0.00 3.69
661 828 3.055591 CAGATCCAAACCATCTCGATCG 58.944 50.000 9.36 9.36 35.56 3.69
662 829 2.695666 AGATCCAAACCATCTCGATCGT 59.304 45.455 15.94 0.00 35.56 3.73
663 830 2.579207 TCCAAACCATCTCGATCGTC 57.421 50.000 15.94 0.00 0.00 4.20
664 831 1.822371 TCCAAACCATCTCGATCGTCA 59.178 47.619 15.94 2.92 0.00 4.35
665 832 2.232696 TCCAAACCATCTCGATCGTCAA 59.767 45.455 15.94 2.07 0.00 3.18
666 833 3.000041 CCAAACCATCTCGATCGTCAAA 59.000 45.455 15.94 0.00 0.00 2.69
667 834 3.623060 CCAAACCATCTCGATCGTCAAAT 59.377 43.478 15.94 1.96 0.00 2.32
668 835 4.260375 CCAAACCATCTCGATCGTCAAATC 60.260 45.833 15.94 0.00 0.00 2.17
669 836 3.801114 ACCATCTCGATCGTCAAATCA 57.199 42.857 15.94 0.00 0.00 2.57
670 837 4.327982 ACCATCTCGATCGTCAAATCAT 57.672 40.909 15.94 0.00 0.00 2.45
671 838 4.053983 ACCATCTCGATCGTCAAATCATG 58.946 43.478 15.94 7.61 0.00 3.07
672 839 4.053983 CCATCTCGATCGTCAAATCATGT 58.946 43.478 15.94 0.00 0.00 3.21
673 840 4.509230 CCATCTCGATCGTCAAATCATGTT 59.491 41.667 15.94 0.00 0.00 2.71
674 841 5.691754 CCATCTCGATCGTCAAATCATGTTA 59.308 40.000 15.94 0.00 0.00 2.41
675 842 6.367149 CCATCTCGATCGTCAAATCATGTTAT 59.633 38.462 15.94 0.00 0.00 1.89
676 843 6.993175 TCTCGATCGTCAAATCATGTTATC 57.007 37.500 15.94 0.00 0.00 1.75
677 844 6.739112 TCTCGATCGTCAAATCATGTTATCT 58.261 36.000 15.94 0.00 0.00 1.98
678 845 7.871853 TCTCGATCGTCAAATCATGTTATCTA 58.128 34.615 15.94 0.00 0.00 1.98
679 846 8.017946 TCTCGATCGTCAAATCATGTTATCTAG 58.982 37.037 15.94 0.00 0.00 2.43
680 847 6.582672 TCGATCGTCAAATCATGTTATCTAGC 59.417 38.462 15.94 0.00 0.00 3.42
681 848 6.451700 CGATCGTCAAATCATGTTATCTAGCG 60.452 42.308 7.03 0.00 0.00 4.26
682 849 4.982295 TCGTCAAATCATGTTATCTAGCGG 59.018 41.667 0.00 0.00 0.00 5.52
683 850 4.376413 CGTCAAATCATGTTATCTAGCGGC 60.376 45.833 0.00 0.00 0.00 6.53
684 851 4.752101 GTCAAATCATGTTATCTAGCGGCT 59.248 41.667 7.98 7.98 0.00 5.52
685 852 4.991056 TCAAATCATGTTATCTAGCGGCTC 59.009 41.667 5.39 0.00 0.00 4.70
686 853 4.607293 AATCATGTTATCTAGCGGCTCA 57.393 40.909 5.39 0.00 0.00 4.26
687 854 4.607293 ATCATGTTATCTAGCGGCTCAA 57.393 40.909 5.39 0.00 0.00 3.02
688 855 4.400529 TCATGTTATCTAGCGGCTCAAA 57.599 40.909 5.39 0.00 0.00 2.69
689 856 4.960938 TCATGTTATCTAGCGGCTCAAAT 58.039 39.130 5.39 1.13 0.00 2.32
690 857 4.991056 TCATGTTATCTAGCGGCTCAAATC 59.009 41.667 5.39 0.00 0.00 2.17
691 858 3.381045 TGTTATCTAGCGGCTCAAATCG 58.619 45.455 5.39 0.00 0.00 3.34
697 864 3.889227 CGGCTCAAATCGCTCCAA 58.111 55.556 0.00 0.00 0.00 3.53
698 865 2.397751 CGGCTCAAATCGCTCCAAT 58.602 52.632 0.00 0.00 0.00 3.16
699 866 0.028505 CGGCTCAAATCGCTCCAATG 59.971 55.000 0.00 0.00 0.00 2.82
700 867 1.098050 GGCTCAAATCGCTCCAATGT 58.902 50.000 0.00 0.00 0.00 2.71
701 868 1.474077 GGCTCAAATCGCTCCAATGTT 59.526 47.619 0.00 0.00 0.00 2.71
702 869 2.523015 GCTCAAATCGCTCCAATGTTG 58.477 47.619 0.00 0.00 0.00 3.33
703 870 2.162208 GCTCAAATCGCTCCAATGTTGA 59.838 45.455 0.00 0.00 0.00 3.18
704 871 3.730061 GCTCAAATCGCTCCAATGTTGAG 60.730 47.826 6.81 6.81 43.02 3.02
705 872 2.162208 TCAAATCGCTCCAATGTTGAGC 59.838 45.455 2.24 2.24 38.48 4.26
706 873 1.825090 AATCGCTCCAATGTTGAGCA 58.175 45.000 12.22 1.02 41.64 4.26
707 874 1.089920 ATCGCTCCAATGTTGAGCAC 58.910 50.000 12.22 0.00 41.64 4.40
708 875 0.955428 TCGCTCCAATGTTGAGCACC 60.955 55.000 12.22 0.00 41.64 5.01
709 876 1.236616 CGCTCCAATGTTGAGCACCA 61.237 55.000 12.22 0.00 41.64 4.17
710 877 0.961019 GCTCCAATGTTGAGCACCAA 59.039 50.000 7.35 0.00 41.24 3.67
711 878 1.340889 GCTCCAATGTTGAGCACCAAA 59.659 47.619 7.35 0.00 41.24 3.28
712 879 2.863704 GCTCCAATGTTGAGCACCAAAC 60.864 50.000 7.35 0.00 41.24 2.93
713 880 2.361757 CTCCAATGTTGAGCACCAAACA 59.638 45.455 0.00 0.00 36.36 2.83
714 881 2.964464 TCCAATGTTGAGCACCAAACAT 59.036 40.909 0.00 0.00 36.36 2.71
715 882 3.061322 CCAATGTTGAGCACCAAACATG 58.939 45.455 2.08 0.00 36.36 3.21
716 883 3.493002 CCAATGTTGAGCACCAAACATGT 60.493 43.478 0.00 0.00 36.36 3.21
717 884 4.121317 CAATGTTGAGCACCAAACATGTT 58.879 39.130 4.92 4.92 36.36 2.71
718 885 3.883830 TGTTGAGCACCAAACATGTTT 57.116 38.095 18.13 18.13 36.36 2.83
719 886 4.991153 TGTTGAGCACCAAACATGTTTA 57.009 36.364 22.87 3.58 36.36 2.01
720 887 5.330455 TGTTGAGCACCAAACATGTTTAA 57.670 34.783 22.87 9.60 36.36 1.52
721 888 5.105752 TGTTGAGCACCAAACATGTTTAAC 58.894 37.500 22.87 19.86 36.36 2.01
722 889 3.958704 TGAGCACCAAACATGTTTAACG 58.041 40.909 22.87 15.18 0.00 3.18
723 890 3.378742 TGAGCACCAAACATGTTTAACGT 59.621 39.130 22.87 15.77 0.00 3.99
724 891 4.142359 TGAGCACCAAACATGTTTAACGTT 60.142 37.500 22.87 11.83 0.00 3.99
725 892 4.356289 AGCACCAAACATGTTTAACGTTC 58.644 39.130 22.87 13.39 0.00 3.95
726 893 4.097286 AGCACCAAACATGTTTAACGTTCT 59.903 37.500 22.87 15.15 0.00 3.01
727 894 5.297278 AGCACCAAACATGTTTAACGTTCTA 59.703 36.000 22.87 0.00 0.00 2.10
728 895 5.972382 GCACCAAACATGTTTAACGTTCTAA 59.028 36.000 22.87 0.00 0.00 2.10
729 896 6.639279 GCACCAAACATGTTTAACGTTCTAAT 59.361 34.615 22.87 0.00 0.00 1.73
730 897 7.168469 GCACCAAACATGTTTAACGTTCTAATT 59.832 33.333 22.87 0.00 0.00 1.40
731 898 9.666626 CACCAAACATGTTTAACGTTCTAATTA 57.333 29.630 22.87 0.00 0.00 1.40
732 899 9.667989 ACCAAACATGTTTAACGTTCTAATTAC 57.332 29.630 22.87 0.00 0.00 1.89
733 900 9.120422 CCAAACATGTTTAACGTTCTAATTACC 57.880 33.333 22.87 0.00 0.00 2.85
734 901 9.120422 CAAACATGTTTAACGTTCTAATTACCC 57.880 33.333 22.87 0.00 0.00 3.69
735 902 7.982761 ACATGTTTAACGTTCTAATTACCCA 57.017 32.000 2.82 0.00 0.00 4.51
736 903 7.809665 ACATGTTTAACGTTCTAATTACCCAC 58.190 34.615 2.82 0.00 0.00 4.61
737 904 6.799926 TGTTTAACGTTCTAATTACCCACC 57.200 37.500 2.82 0.00 0.00 4.61
738 905 6.294473 TGTTTAACGTTCTAATTACCCACCA 58.706 36.000 2.82 0.00 0.00 4.17
739 906 6.204495 TGTTTAACGTTCTAATTACCCACCAC 59.796 38.462 2.82 0.00 0.00 4.16
740 907 4.628963 AACGTTCTAATTACCCACCACT 57.371 40.909 0.00 0.00 0.00 4.00
741 908 3.934068 ACGTTCTAATTACCCACCACTG 58.066 45.455 0.00 0.00 0.00 3.66
742 909 2.676342 CGTTCTAATTACCCACCACTGC 59.324 50.000 0.00 0.00 0.00 4.40
743 910 3.014623 GTTCTAATTACCCACCACTGCC 58.985 50.000 0.00 0.00 0.00 4.85
744 911 2.270858 TCTAATTACCCACCACTGCCA 58.729 47.619 0.00 0.00 0.00 4.92
745 912 2.849943 TCTAATTACCCACCACTGCCAT 59.150 45.455 0.00 0.00 0.00 4.40
746 913 2.621556 AATTACCCACCACTGCCATT 57.378 45.000 0.00 0.00 0.00 3.16
747 914 1.851304 ATTACCCACCACTGCCATTG 58.149 50.000 0.00 0.00 0.00 2.82
748 915 0.251564 TTACCCACCACTGCCATTGG 60.252 55.000 0.00 0.00 40.32 3.16
750 917 1.533753 CCCACCACTGCCATTGGTT 60.534 57.895 3.63 0.00 45.62 3.67
751 918 0.251564 CCCACCACTGCCATTGGTTA 60.252 55.000 3.63 0.00 45.62 2.85
752 919 1.619432 CCCACCACTGCCATTGGTTAT 60.619 52.381 3.63 0.00 45.62 1.89
753 920 2.357673 CCCACCACTGCCATTGGTTATA 60.358 50.000 3.63 0.00 45.62 0.98
754 921 3.360867 CCACCACTGCCATTGGTTATAA 58.639 45.455 3.63 0.00 45.62 0.98
755 922 3.766591 CCACCACTGCCATTGGTTATAAA 59.233 43.478 3.63 0.00 45.62 1.40
756 923 4.381505 CCACCACTGCCATTGGTTATAAAC 60.382 45.833 3.63 0.00 45.62 2.01
757 924 4.219507 CACCACTGCCATTGGTTATAAACA 59.780 41.667 3.63 0.00 45.62 2.83
758 925 4.219725 ACCACTGCCATTGGTTATAAACAC 59.780 41.667 1.72 0.00 45.62 3.32
759 926 4.411327 CACTGCCATTGGTTATAAACACG 58.589 43.478 1.72 0.00 0.00 4.49
760 927 3.119637 ACTGCCATTGGTTATAAACACGC 60.120 43.478 1.72 6.12 0.00 5.34
761 928 3.085533 TGCCATTGGTTATAAACACGCT 58.914 40.909 1.72 0.00 0.00 5.07
762 929 3.508012 TGCCATTGGTTATAAACACGCTT 59.492 39.130 1.72 0.00 0.00 4.68
763 930 4.021894 TGCCATTGGTTATAAACACGCTTT 60.022 37.500 1.72 0.00 0.00 3.51
764 931 4.326009 GCCATTGGTTATAAACACGCTTTG 59.674 41.667 1.72 0.00 0.00 2.77
765 932 5.704888 CCATTGGTTATAAACACGCTTTGA 58.295 37.500 1.72 0.00 0.00 2.69
766 933 5.571357 CCATTGGTTATAAACACGCTTTGAC 59.429 40.000 1.72 0.00 0.00 3.18
767 934 6.378582 CATTGGTTATAAACACGCTTTGACT 58.621 36.000 1.72 0.00 0.00 3.41
768 935 5.600908 TGGTTATAAACACGCTTTGACTC 57.399 39.130 0.00 0.00 0.00 3.36
769 936 5.057819 TGGTTATAAACACGCTTTGACTCA 58.942 37.500 0.00 0.00 0.00 3.41
770 937 5.527951 TGGTTATAAACACGCTTTGACTCAA 59.472 36.000 0.00 0.00 0.00 3.02
771 938 5.849604 GGTTATAAACACGCTTTGACTCAAC 59.150 40.000 0.00 0.00 0.00 3.18
772 939 2.452006 AAACACGCTTTGACTCAACG 57.548 45.000 0.00 0.00 0.00 4.10
773 940 0.027586 AACACGCTTTGACTCAACGC 59.972 50.000 9.66 9.66 35.69 4.84
774 941 0.810031 ACACGCTTTGACTCAACGCT 60.810 50.000 15.91 3.48 36.65 5.07
775 942 1.136690 CACGCTTTGACTCAACGCTA 58.863 50.000 15.91 0.00 36.65 4.26
776 943 1.726791 CACGCTTTGACTCAACGCTAT 59.273 47.619 15.91 4.06 36.65 2.97
777 944 1.993370 ACGCTTTGACTCAACGCTATC 59.007 47.619 15.91 0.00 36.65 2.08
778 945 1.324736 CGCTTTGACTCAACGCTATCC 59.675 52.381 15.91 0.00 36.65 2.59
779 946 1.666189 GCTTTGACTCAACGCTATCCC 59.334 52.381 11.94 0.00 36.04 3.85
780 947 2.678190 GCTTTGACTCAACGCTATCCCT 60.678 50.000 11.94 0.00 36.04 4.20
781 948 3.600388 CTTTGACTCAACGCTATCCCTT 58.400 45.455 0.00 0.00 0.00 3.95
782 949 2.672961 TGACTCAACGCTATCCCTTG 57.327 50.000 0.00 0.00 0.00 3.61
783 950 2.176045 TGACTCAACGCTATCCCTTGA 58.824 47.619 0.00 0.00 0.00 3.02
784 951 2.565391 TGACTCAACGCTATCCCTTGAA 59.435 45.455 0.00 0.00 0.00 2.69
785 952 3.007506 TGACTCAACGCTATCCCTTGAAA 59.992 43.478 0.00 0.00 0.00 2.69
786 953 4.192317 GACTCAACGCTATCCCTTGAAAT 58.808 43.478 0.00 0.00 0.00 2.17
787 954 4.192317 ACTCAACGCTATCCCTTGAAATC 58.808 43.478 0.00 0.00 0.00 2.17
788 955 4.080863 ACTCAACGCTATCCCTTGAAATCT 60.081 41.667 0.00 0.00 0.00 2.40
789 956 4.191544 TCAACGCTATCCCTTGAAATCTG 58.808 43.478 0.00 0.00 0.00 2.90
790 957 2.565841 ACGCTATCCCTTGAAATCTGC 58.434 47.619 0.00 0.00 0.00 4.26
791 958 1.876156 CGCTATCCCTTGAAATCTGCC 59.124 52.381 0.00 0.00 0.00 4.85
792 959 1.876156 GCTATCCCTTGAAATCTGCCG 59.124 52.381 0.00 0.00 0.00 5.69
793 960 2.746472 GCTATCCCTTGAAATCTGCCGT 60.746 50.000 0.00 0.00 0.00 5.68
794 961 1.755179 ATCCCTTGAAATCTGCCGTG 58.245 50.000 0.00 0.00 0.00 4.94
795 962 0.400213 TCCCTTGAAATCTGCCGTGT 59.600 50.000 0.00 0.00 0.00 4.49
796 963 1.626321 TCCCTTGAAATCTGCCGTGTA 59.374 47.619 0.00 0.00 0.00 2.90
797 964 2.039216 TCCCTTGAAATCTGCCGTGTAA 59.961 45.455 0.00 0.00 0.00 2.41
798 965 3.016736 CCCTTGAAATCTGCCGTGTAAT 58.983 45.455 0.00 0.00 0.00 1.89
799 966 3.443681 CCCTTGAAATCTGCCGTGTAATT 59.556 43.478 0.00 0.00 0.00 1.40
800 967 4.638421 CCCTTGAAATCTGCCGTGTAATTA 59.362 41.667 0.00 0.00 0.00 1.40
801 968 5.124776 CCCTTGAAATCTGCCGTGTAATTAA 59.875 40.000 0.00 0.00 0.00 1.40
802 969 6.183360 CCCTTGAAATCTGCCGTGTAATTAAT 60.183 38.462 0.00 0.00 0.00 1.40
803 970 7.012894 CCCTTGAAATCTGCCGTGTAATTAATA 59.987 37.037 0.00 0.00 0.00 0.98
804 971 8.567948 CCTTGAAATCTGCCGTGTAATTAATAT 58.432 33.333 0.00 0.00 0.00 1.28
805 972 9.599322 CTTGAAATCTGCCGTGTAATTAATATC 57.401 33.333 0.00 0.00 0.00 1.63
806 973 8.094798 TGAAATCTGCCGTGTAATTAATATCC 57.905 34.615 0.00 0.00 0.00 2.59
807 974 7.936847 TGAAATCTGCCGTGTAATTAATATCCT 59.063 33.333 0.00 0.00 0.00 3.24
808 975 9.431887 GAAATCTGCCGTGTAATTAATATCCTA 57.568 33.333 0.00 0.00 0.00 2.94
809 976 8.773404 AATCTGCCGTGTAATTAATATCCTAC 57.227 34.615 0.00 0.00 0.00 3.18
810 977 6.694447 TCTGCCGTGTAATTAATATCCTACC 58.306 40.000 0.00 0.00 0.00 3.18
811 978 6.268158 TCTGCCGTGTAATTAATATCCTACCA 59.732 38.462 0.00 0.00 0.00 3.25
812 979 7.011499 TGCCGTGTAATTAATATCCTACCAT 57.989 36.000 0.00 0.00 0.00 3.55
813 980 7.455058 TGCCGTGTAATTAATATCCTACCATT 58.545 34.615 0.00 0.00 0.00 3.16
814 981 7.604927 TGCCGTGTAATTAATATCCTACCATTC 59.395 37.037 0.00 0.00 0.00 2.67
815 982 7.065443 GCCGTGTAATTAATATCCTACCATTCC 59.935 40.741 0.00 0.00 0.00 3.01
816 983 7.551617 CCGTGTAATTAATATCCTACCATTCCC 59.448 40.741 0.00 0.00 0.00 3.97
817 984 7.277098 CGTGTAATTAATATCCTACCATTCCCG 59.723 40.741 0.00 0.00 0.00 5.14
818 985 7.065443 GTGTAATTAATATCCTACCATTCCCGC 59.935 40.741 0.00 0.00 0.00 6.13
819 986 2.762535 AATATCCTACCATTCCCGCG 57.237 50.000 0.00 0.00 0.00 6.46
820 987 1.933021 ATATCCTACCATTCCCGCGA 58.067 50.000 8.23 0.00 0.00 5.87
821 988 1.707106 TATCCTACCATTCCCGCGAA 58.293 50.000 8.23 0.00 0.00 4.70
822 989 0.834612 ATCCTACCATTCCCGCGAAA 59.165 50.000 8.23 1.06 0.00 3.46
823 990 0.614294 TCCTACCATTCCCGCGAAAA 59.386 50.000 8.23 0.61 0.00 2.29
824 991 1.003349 TCCTACCATTCCCGCGAAAAA 59.997 47.619 8.23 0.00 0.00 1.94
825 992 1.400494 CCTACCATTCCCGCGAAAAAG 59.600 52.381 8.23 0.00 0.00 2.27
826 993 2.081462 CTACCATTCCCGCGAAAAAGT 58.919 47.619 8.23 6.23 0.00 2.66
827 994 2.188062 ACCATTCCCGCGAAAAAGTA 57.812 45.000 8.23 0.00 0.00 2.24
828 995 2.506444 ACCATTCCCGCGAAAAAGTAA 58.494 42.857 8.23 0.00 0.00 2.24
829 996 3.086282 ACCATTCCCGCGAAAAAGTAAT 58.914 40.909 8.23 0.00 0.00 1.89
830 997 3.508402 ACCATTCCCGCGAAAAAGTAATT 59.492 39.130 8.23 0.00 0.00 1.40
831 998 3.857093 CCATTCCCGCGAAAAAGTAATTG 59.143 43.478 8.23 0.00 0.00 2.32
832 999 4.380023 CCATTCCCGCGAAAAAGTAATTGA 60.380 41.667 8.23 0.00 0.00 2.57
833 1000 5.339990 CATTCCCGCGAAAAAGTAATTGAT 58.660 37.500 8.23 0.00 0.00 2.57
834 1001 6.459024 CCATTCCCGCGAAAAAGTAATTGATA 60.459 38.462 8.23 0.00 0.00 2.15
835 1002 6.687081 TTCCCGCGAAAAAGTAATTGATAT 57.313 33.333 8.23 0.00 0.00 1.63
836 1003 6.295039 TCCCGCGAAAAAGTAATTGATATC 57.705 37.500 8.23 0.00 0.00 1.63
837 1004 6.053005 TCCCGCGAAAAAGTAATTGATATCT 58.947 36.000 8.23 0.00 0.00 1.98
838 1005 6.540914 TCCCGCGAAAAAGTAATTGATATCTT 59.459 34.615 8.23 0.00 0.00 2.40
839 1006 7.711772 TCCCGCGAAAAAGTAATTGATATCTTA 59.288 33.333 8.23 0.00 0.00 2.10
840 1007 7.797123 CCCGCGAAAAAGTAATTGATATCTTAC 59.203 37.037 8.23 5.62 0.00 2.34
841 1008 7.797123 CCGCGAAAAAGTAATTGATATCTTACC 59.203 37.037 8.23 0.00 0.00 2.85
842 1009 8.332464 CGCGAAAAAGTAATTGATATCTTACCA 58.668 33.333 0.00 0.00 0.00 3.25
843 1010 9.997482 GCGAAAAAGTAATTGATATCTTACCAA 57.003 29.630 3.98 0.00 0.00 3.67
855 1022 8.220755 TGATATCTTACCAAATACCAAAGTGC 57.779 34.615 3.98 0.00 0.00 4.40
856 1023 7.831690 TGATATCTTACCAAATACCAAAGTGCA 59.168 33.333 3.98 0.00 0.00 4.57
857 1024 6.909550 ATCTTACCAAATACCAAAGTGCAA 57.090 33.333 0.00 0.00 0.00 4.08
858 1025 6.079424 TCTTACCAAATACCAAAGTGCAAC 57.921 37.500 0.00 0.00 0.00 4.17
859 1026 5.594725 TCTTACCAAATACCAAAGTGCAACA 59.405 36.000 0.00 0.00 41.43 3.33
860 1027 4.320608 ACCAAATACCAAAGTGCAACAG 57.679 40.909 0.00 0.00 41.43 3.16
861 1028 3.957497 ACCAAATACCAAAGTGCAACAGA 59.043 39.130 0.00 0.00 41.43 3.41
862 1029 4.588528 ACCAAATACCAAAGTGCAACAGAT 59.411 37.500 0.00 0.00 41.43 2.90
863 1030 5.772672 ACCAAATACCAAAGTGCAACAGATA 59.227 36.000 0.00 0.00 41.43 1.98
864 1031 6.437162 ACCAAATACCAAAGTGCAACAGATAT 59.563 34.615 0.00 0.00 41.43 1.63
865 1032 7.613801 ACCAAATACCAAAGTGCAACAGATATA 59.386 33.333 0.00 0.00 41.43 0.86
866 1033 8.632679 CCAAATACCAAAGTGCAACAGATATAT 58.367 33.333 0.00 0.00 41.43 0.86
867 1034 9.669353 CAAATACCAAAGTGCAACAGATATATC 57.331 33.333 4.42 4.42 41.43 1.63
868 1035 9.632638 AAATACCAAAGTGCAACAGATATATCT 57.367 29.630 9.57 9.57 41.43 1.98
869 1036 9.632638 AATACCAAAGTGCAACAGATATATCTT 57.367 29.630 12.75 2.49 41.43 2.40
871 1038 8.438676 ACCAAAGTGCAACAGATATATCTTAC 57.561 34.615 12.75 7.41 41.43 2.34
872 1039 7.499232 ACCAAAGTGCAACAGATATATCTTACC 59.501 37.037 12.75 3.07 41.43 2.85
873 1040 7.716998 CCAAAGTGCAACAGATATATCTTACCT 59.283 37.037 12.75 1.28 41.43 3.08
874 1041 9.764363 CAAAGTGCAACAGATATATCTTACCTA 57.236 33.333 12.75 0.00 41.43 3.08
923 1090 8.601845 ATCTAATAGTATAAACGTGCATTGCA 57.398 30.769 7.38 7.38 35.60 4.08
939 1106 7.172654 TGCATTGCACGTACATTATTACTAG 57.827 36.000 7.38 0.00 31.71 2.57
974 1141 3.955650 TCCTCTACTGCCACTTGTTAC 57.044 47.619 0.00 0.00 0.00 2.50
1101 1298 8.655901 TGTCTTACCCAATATAGATGTGCAATA 58.344 33.333 0.00 0.00 0.00 1.90
1158 1355 4.789012 AATGTGTATCTTGGCACCAAAG 57.211 40.909 3.29 0.00 35.33 2.77
1220 1418 9.679661 TTAACTGAGGATTGTTTAGATATGCAA 57.320 29.630 0.00 0.00 0.00 4.08
1387 1589 7.149277 ACTATATAGGCCATCTATTTGGGGAT 58.851 38.462 14.25 0.00 39.30 3.85
1543 1745 0.322816 GCTTCCTCCAATGCCTCACA 60.323 55.000 0.00 0.00 0.00 3.58
1564 1766 5.009010 CACAAAGGCTAACATCTCAGTGTTT 59.991 40.000 0.00 0.00 42.08 2.83
1994 2196 2.180017 GCTTTGGCACGCTGATGG 59.820 61.111 0.00 0.00 38.54 3.51
2150 2372 2.581354 GCAGGTGAGGCTCGTGAT 59.419 61.111 10.42 0.00 0.00 3.06
2157 2379 3.140225 GAGGCTCGTGATCGTCCCC 62.140 68.421 0.00 0.00 38.33 4.81
2286 2508 1.377725 CAGGGCGCTTGTCCAGAAT 60.378 57.895 7.64 0.00 41.02 2.40
2293 2515 2.079158 CGCTTGTCCAGAATGACATGT 58.921 47.619 0.00 0.00 44.27 3.21
2486 2729 1.613925 CACCTCTGAGTTCGACTCCAA 59.386 52.381 3.66 1.47 44.44 3.53
2610 2856 2.684294 TTGGTCCCATACGGCGGA 60.684 61.111 13.24 1.23 0.00 5.54
2623 2869 1.298157 CGGCGGAAAGATGAGCAACA 61.298 55.000 0.00 0.00 0.00 3.33
2751 3007 2.239654 CAAGTGGGTCAGGGACATGTAT 59.760 50.000 0.00 0.00 33.68 2.29
2826 3082 0.548682 ACTGCAGGGACCTGGATCTT 60.549 55.000 19.93 2.20 43.20 2.40
2960 3220 5.633182 TGCCAAAACGAGCATCTTAATTTTC 59.367 36.000 0.00 0.00 33.08 2.29
3379 5673 6.440010 TGAAGATTATTCAAGGGGCAAATCAA 59.560 34.615 0.00 0.00 0.00 2.57
3457 5754 3.660501 ACGAACTGCATAGTCTCACAA 57.339 42.857 0.00 0.00 35.69 3.33
3474 5771 2.215363 CACAACGTGATTCAAAAACGGC 59.785 45.455 0.00 0.00 41.50 5.68
3521 5818 5.765677 TCAGTAGTAGATGCTTCGCTAATCT 59.234 40.000 7.95 0.00 34.99 2.40
3522 5819 5.855925 CAGTAGTAGATGCTTCGCTAATCTG 59.144 44.000 7.95 8.37 32.92 2.90
3530 5827 4.060900 TGCTTCGCTAATCTGAATCCATC 58.939 43.478 0.00 0.00 0.00 3.51
3553 5850 4.461081 CGGTAAAGTTGGGATGGATTCAAA 59.539 41.667 0.00 0.00 0.00 2.69
3561 5858 9.713684 AAGTTGGGATGGATTCAAATATAAAGA 57.286 29.630 0.00 0.00 0.00 2.52
3606 5903 3.261897 AGAAACGAACCTGATCCAGATGT 59.738 43.478 0.00 0.00 32.44 3.06
3611 5908 4.455877 ACGAACCTGATCCAGATGTTTTTC 59.544 41.667 0.00 0.00 32.44 2.29
3663 5967 8.786898 TCTAGATCAAGAACACAAAATTTGAGG 58.213 33.333 13.19 6.66 32.00 3.86
3664 5968 7.352079 AGATCAAGAACACAAAATTTGAGGT 57.648 32.000 13.19 2.58 32.00 3.85
3676 5980 9.398170 CACAAAATTTGAGGTAGTAAGATGTTG 57.602 33.333 13.19 0.00 0.00 3.33
3678 5982 9.612620 CAAAATTTGAGGTAGTAAGATGTTGAC 57.387 33.333 0.00 0.00 0.00 3.18
3690 5994 2.915604 AGATGTTGACCAACTGGATCCT 59.084 45.455 14.23 0.00 41.67 3.24
3692 5996 3.140325 TGTTGACCAACTGGATCCTTC 57.860 47.619 14.23 0.66 41.67 3.46
3697 6001 1.214305 CCAACTGGATCCTTCCCCCA 61.214 60.000 14.23 0.00 41.83 4.96
3700 6004 0.704664 ACTGGATCCTTCCCCCAAAC 59.295 55.000 14.23 0.00 41.83 2.93
3701 6005 1.002857 CTGGATCCTTCCCCCAAACT 58.997 55.000 14.23 0.00 41.83 2.66
3702 6006 0.999712 TGGATCCTTCCCCCAAACTC 59.000 55.000 14.23 0.00 41.83 3.01
3724 6029 2.483491 GCTTGCTTCAGTTTGGAGAGAG 59.517 50.000 0.00 0.00 0.00 3.20
3726 6031 4.577875 CTTGCTTCAGTTTGGAGAGAGAT 58.422 43.478 0.00 0.00 0.00 2.75
3734 6039 4.874966 CAGTTTGGAGAGAGATGATGGTTC 59.125 45.833 0.00 0.00 0.00 3.62
3737 6042 3.036819 TGGAGAGAGATGATGGTTCCAG 58.963 50.000 0.00 0.00 0.00 3.86
3744 6049 3.690460 AGATGATGGTTCCAGTTTCCAC 58.310 45.455 0.00 0.00 33.91 4.02
3745 6050 3.074390 AGATGATGGTTCCAGTTTCCACA 59.926 43.478 0.00 0.00 33.91 4.17
3746 6051 2.862541 TGATGGTTCCAGTTTCCACAG 58.137 47.619 0.00 0.00 33.91 3.66
3747 6052 2.441375 TGATGGTTCCAGTTTCCACAGA 59.559 45.455 0.00 0.00 33.91 3.41
3761 6068 3.576861 TCCACAGAGGAAGAGAGAACAA 58.423 45.455 0.00 0.00 45.65 2.83
3775 6082 2.106684 GAGAACAAAGACAGGAGGGGTT 59.893 50.000 0.00 0.00 0.00 4.11
3789 6096 0.679505 GGGGTTGGGTTTTGAGCTTC 59.320 55.000 0.00 0.00 0.00 3.86
3791 6098 0.313987 GGTTGGGTTTTGAGCTTCGG 59.686 55.000 0.00 0.00 0.00 4.30
3792 6099 0.313987 GTTGGGTTTTGAGCTTCGGG 59.686 55.000 0.00 0.00 0.00 5.14
3796 6103 0.313987 GGTTTTGAGCTTCGGGTTGG 59.686 55.000 0.00 0.00 0.00 3.77
3866 6173 3.517612 AGGCTGGAGACTAACTTGGTTA 58.482 45.455 0.00 0.00 0.00 2.85
3893 6200 3.123620 GTGGCGCTGCTGAGGAAG 61.124 66.667 7.64 0.00 0.00 3.46
3953 6260 0.608130 CCTATGGCGTGCTATGGCTA 59.392 55.000 1.68 0.00 39.59 3.93
3965 6272 4.023707 GTGCTATGGCTATTGAATGGACAC 60.024 45.833 0.00 0.00 39.59 3.67
3967 6274 4.453819 GCTATGGCTATTGAATGGACACTC 59.546 45.833 0.00 0.00 28.70 3.51
3977 6284 6.381498 TTGAATGGACACTCCCTAATGTAA 57.619 37.500 0.00 0.00 35.03 2.41
4064 6371 1.059835 GAGTTCGAAATGAGCTCGTGC 59.940 52.381 9.75 0.07 43.69 5.34
4065 6372 0.790207 GTTCGAAATGAGCTCGTGCA 59.210 50.000 9.75 0.00 42.74 4.57
4066 6373 0.790207 TTCGAAATGAGCTCGTGCAC 59.210 50.000 9.75 6.82 42.74 4.57
4067 6374 0.038251 TCGAAATGAGCTCGTGCACT 60.038 50.000 16.19 0.00 42.74 4.40
4068 6375 0.368227 CGAAATGAGCTCGTGCACTC 59.632 55.000 16.19 6.05 42.74 3.51
4069 6376 0.368227 GAAATGAGCTCGTGCACTCG 59.632 55.000 16.19 6.58 42.74 4.18
4070 6377 0.038251 AAATGAGCTCGTGCACTCGA 60.038 50.000 16.19 7.30 42.74 4.04
4071 6378 0.038251 AATGAGCTCGTGCACTCGAA 60.038 50.000 16.19 0.00 42.74 3.71
4072 6379 0.457509 ATGAGCTCGTGCACTCGAAG 60.458 55.000 16.19 8.04 42.74 3.79
4073 6380 2.431601 AGCTCGTGCACTCGAAGC 60.432 61.111 16.19 16.96 42.74 3.86
4074 6381 3.482783 GCTCGTGCACTCGAAGCC 61.483 66.667 16.19 0.00 39.34 4.35
4075 6382 2.811317 CTCGTGCACTCGAAGCCC 60.811 66.667 16.19 0.00 39.34 5.19
4076 6383 4.717629 TCGTGCACTCGAAGCCCG 62.718 66.667 16.19 7.83 36.89 6.13
4079 6386 4.742201 TGCACTCGAAGCCCGCTC 62.742 66.667 7.01 0.00 38.37 5.03
4081 6388 3.764466 CACTCGAAGCCCGCTCCT 61.764 66.667 0.00 0.00 38.37 3.69
4082 6389 3.453679 ACTCGAAGCCCGCTCCTC 61.454 66.667 0.00 0.00 38.37 3.71
4083 6390 4.214327 CTCGAAGCCCGCTCCTCC 62.214 72.222 0.00 0.00 38.37 4.30
4091 6398 4.227134 CCGCTCCTCCCGTGGATG 62.227 72.222 0.00 0.00 35.30 3.51
4092 6399 3.461773 CGCTCCTCCCGTGGATGT 61.462 66.667 0.00 0.00 35.30 3.06
4093 6400 2.501610 GCTCCTCCCGTGGATGTC 59.498 66.667 0.00 0.00 35.30 3.06
4094 6401 2.060980 GCTCCTCCCGTGGATGTCT 61.061 63.158 0.00 0.00 35.30 3.41
4095 6402 2.022240 GCTCCTCCCGTGGATGTCTC 62.022 65.000 0.00 0.00 35.30 3.36
4096 6403 0.396417 CTCCTCCCGTGGATGTCTCT 60.396 60.000 0.00 0.00 35.30 3.10
4097 6404 0.684479 TCCTCCCGTGGATGTCTCTG 60.684 60.000 0.00 0.00 0.00 3.35
4098 6405 0.972983 CCTCCCGTGGATGTCTCTGT 60.973 60.000 0.00 0.00 0.00 3.41
4099 6406 0.174389 CTCCCGTGGATGTCTCTGTG 59.826 60.000 0.00 0.00 0.00 3.66
4100 6407 0.251608 TCCCGTGGATGTCTCTGTGA 60.252 55.000 0.00 0.00 0.00 3.58
4101 6408 0.174389 CCCGTGGATGTCTCTGTGAG 59.826 60.000 0.00 0.00 0.00 3.51
4102 6409 1.177401 CCGTGGATGTCTCTGTGAGA 58.823 55.000 0.00 0.00 36.22 3.27
4103 6410 1.753649 CCGTGGATGTCTCTGTGAGAT 59.246 52.381 0.40 0.00 40.98 2.75
4104 6411 2.167281 CCGTGGATGTCTCTGTGAGATT 59.833 50.000 0.40 0.00 40.98 2.40
4105 6412 3.368843 CCGTGGATGTCTCTGTGAGATTT 60.369 47.826 0.40 0.00 40.98 2.17
4106 6413 4.248859 CGTGGATGTCTCTGTGAGATTTT 58.751 43.478 0.40 0.00 40.98 1.82
4107 6414 4.692625 CGTGGATGTCTCTGTGAGATTTTT 59.307 41.667 0.40 0.00 40.98 1.94
4108 6415 5.869344 CGTGGATGTCTCTGTGAGATTTTTA 59.131 40.000 0.40 0.00 40.98 1.52
4109 6416 6.536582 CGTGGATGTCTCTGTGAGATTTTTAT 59.463 38.462 0.40 0.00 40.98 1.40
4110 6417 7.254252 CGTGGATGTCTCTGTGAGATTTTTATC 60.254 40.741 0.40 2.03 40.98 1.75
4111 6418 7.550551 GTGGATGTCTCTGTGAGATTTTTATCA 59.449 37.037 0.40 0.00 40.98 2.15
4112 6419 8.102676 TGGATGTCTCTGTGAGATTTTTATCAA 58.897 33.333 0.40 0.00 40.98 2.57
4113 6420 8.610896 GGATGTCTCTGTGAGATTTTTATCAAG 58.389 37.037 0.40 0.00 40.98 3.02
4114 6421 7.369803 TGTCTCTGTGAGATTTTTATCAAGC 57.630 36.000 0.40 0.00 40.98 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 209 4.092968 GTCCGGTACAGAAATTACTGCAAG 59.907 45.833 0.00 0.00 41.06 4.01
210 262 0.336048 CCTTCCCACCCAACATGGAT 59.664 55.000 0.00 0.00 40.96 3.41
276 328 6.704493 ACAAATATTTACGCGTGATATGAGGT 59.296 34.615 24.59 18.08 0.00 3.85
465 517 8.749026 TGTCACACCAAATTTTTACCTAGTTA 57.251 30.769 0.00 0.00 0.00 2.24
615 782 9.474313 TGCCCATTTGAGTCTTTTTATATTAGT 57.526 29.630 0.00 0.00 0.00 2.24
616 783 9.956720 CTGCCCATTTGAGTCTTTTTATATTAG 57.043 33.333 0.00 0.00 0.00 1.73
617 784 9.693739 TCTGCCCATTTGAGTCTTTTTATATTA 57.306 29.630 0.00 0.00 0.00 0.98
618 785 8.593945 TCTGCCCATTTGAGTCTTTTTATATT 57.406 30.769 0.00 0.00 0.00 1.28
619 786 8.773033 ATCTGCCCATTTGAGTCTTTTTATAT 57.227 30.769 0.00 0.00 0.00 0.86
620 787 7.285401 GGATCTGCCCATTTGAGTCTTTTTATA 59.715 37.037 0.00 0.00 0.00 0.98
621 788 6.097412 GGATCTGCCCATTTGAGTCTTTTTAT 59.903 38.462 0.00 0.00 0.00 1.40
622 789 5.418840 GGATCTGCCCATTTGAGTCTTTTTA 59.581 40.000 0.00 0.00 0.00 1.52
623 790 4.221482 GGATCTGCCCATTTGAGTCTTTTT 59.779 41.667 0.00 0.00 0.00 1.94
624 791 3.766051 GGATCTGCCCATTTGAGTCTTTT 59.234 43.478 0.00 0.00 0.00 2.27
625 792 3.245371 TGGATCTGCCCATTTGAGTCTTT 60.245 43.478 0.00 0.00 34.97 2.52
626 793 2.309755 TGGATCTGCCCATTTGAGTCTT 59.690 45.455 0.00 0.00 34.97 3.01
627 794 1.918262 TGGATCTGCCCATTTGAGTCT 59.082 47.619 0.00 0.00 34.97 3.24
628 795 2.425143 TGGATCTGCCCATTTGAGTC 57.575 50.000 0.00 0.00 34.97 3.36
629 796 2.827921 GTTTGGATCTGCCCATTTGAGT 59.172 45.455 0.00 0.00 35.87 3.41
630 797 2.167075 GGTTTGGATCTGCCCATTTGAG 59.833 50.000 0.00 0.00 35.87 3.02
631 798 2.178580 GGTTTGGATCTGCCCATTTGA 58.821 47.619 0.00 0.00 35.87 2.69
632 799 1.901159 TGGTTTGGATCTGCCCATTTG 59.099 47.619 0.00 0.00 35.87 2.32
633 800 2.323999 TGGTTTGGATCTGCCCATTT 57.676 45.000 0.00 0.00 35.87 2.32
634 801 2.023695 AGATGGTTTGGATCTGCCCATT 60.024 45.455 7.74 0.00 36.08 3.16
635 802 1.572415 AGATGGTTTGGATCTGCCCAT 59.428 47.619 6.49 6.49 38.58 4.00
636 803 1.002069 AGATGGTTTGGATCTGCCCA 58.998 50.000 0.00 0.00 34.97 5.36
637 804 1.685148 GAGATGGTTTGGATCTGCCC 58.315 55.000 0.00 0.00 34.97 5.36
638 805 1.134401 TCGAGATGGTTTGGATCTGCC 60.134 52.381 0.00 0.00 29.97 4.85
639 806 2.315925 TCGAGATGGTTTGGATCTGC 57.684 50.000 0.00 0.00 29.97 4.26
640 807 3.055591 CGATCGAGATGGTTTGGATCTG 58.944 50.000 10.26 0.00 33.15 2.90
641 808 2.695666 ACGATCGAGATGGTTTGGATCT 59.304 45.455 24.34 0.00 33.15 2.75
642 809 3.053455 GACGATCGAGATGGTTTGGATC 58.947 50.000 24.34 0.00 29.74 3.36
643 810 2.430694 TGACGATCGAGATGGTTTGGAT 59.569 45.455 24.34 0.00 29.74 3.41
644 811 1.822371 TGACGATCGAGATGGTTTGGA 59.178 47.619 24.34 0.00 29.74 3.53
645 812 2.293677 TGACGATCGAGATGGTTTGG 57.706 50.000 24.34 0.00 29.74 3.28
646 813 4.329801 TGATTTGACGATCGAGATGGTTTG 59.670 41.667 24.34 0.00 29.74 2.93
647 814 4.503910 TGATTTGACGATCGAGATGGTTT 58.496 39.130 24.34 0.00 29.74 3.27
648 815 4.123497 TGATTTGACGATCGAGATGGTT 57.877 40.909 24.34 0.00 29.74 3.67
649 816 3.801114 TGATTTGACGATCGAGATGGT 57.199 42.857 24.34 0.00 32.33 3.55
650 817 4.053983 ACATGATTTGACGATCGAGATGG 58.946 43.478 24.34 4.39 0.00 3.51
651 818 5.648033 AACATGATTTGACGATCGAGATG 57.352 39.130 24.34 13.48 0.00 2.90
652 819 7.374272 AGATAACATGATTTGACGATCGAGAT 58.626 34.615 24.34 9.38 0.00 2.75
653 820 6.739112 AGATAACATGATTTGACGATCGAGA 58.261 36.000 24.34 4.22 0.00 4.04
654 821 6.999956 AGATAACATGATTTGACGATCGAG 57.000 37.500 24.34 0.00 0.00 4.04
655 822 6.582672 GCTAGATAACATGATTTGACGATCGA 59.417 38.462 24.34 0.00 0.00 3.59
656 823 6.451700 CGCTAGATAACATGATTTGACGATCG 60.452 42.308 14.88 14.88 0.00 3.69
657 824 6.183360 CCGCTAGATAACATGATTTGACGATC 60.183 42.308 0.00 0.00 0.00 3.69
658 825 5.635280 CCGCTAGATAACATGATTTGACGAT 59.365 40.000 0.00 0.00 0.00 3.73
659 826 4.982295 CCGCTAGATAACATGATTTGACGA 59.018 41.667 0.00 0.00 0.00 4.20
660 827 4.376413 GCCGCTAGATAACATGATTTGACG 60.376 45.833 0.00 0.00 0.00 4.35
661 828 4.752101 AGCCGCTAGATAACATGATTTGAC 59.248 41.667 0.00 0.00 0.00 3.18
662 829 4.960938 AGCCGCTAGATAACATGATTTGA 58.039 39.130 0.00 0.00 0.00 2.69
663 830 4.751600 TGAGCCGCTAGATAACATGATTTG 59.248 41.667 0.00 0.00 0.00 2.32
664 831 4.960938 TGAGCCGCTAGATAACATGATTT 58.039 39.130 0.00 0.00 0.00 2.17
665 832 4.607293 TGAGCCGCTAGATAACATGATT 57.393 40.909 0.00 0.00 0.00 2.57
666 833 4.607293 TTGAGCCGCTAGATAACATGAT 57.393 40.909 0.00 0.00 0.00 2.45
667 834 4.400529 TTTGAGCCGCTAGATAACATGA 57.599 40.909 0.00 0.00 0.00 3.07
668 835 4.143242 CGATTTGAGCCGCTAGATAACATG 60.143 45.833 0.00 0.00 0.00 3.21
669 836 3.990469 CGATTTGAGCCGCTAGATAACAT 59.010 43.478 0.00 0.00 0.00 2.71
670 837 3.381045 CGATTTGAGCCGCTAGATAACA 58.619 45.455 0.00 0.00 0.00 2.41
671 838 2.155924 GCGATTTGAGCCGCTAGATAAC 59.844 50.000 0.00 0.00 46.96 1.89
672 839 2.404215 GCGATTTGAGCCGCTAGATAA 58.596 47.619 0.00 0.00 46.96 1.75
673 840 2.065993 GCGATTTGAGCCGCTAGATA 57.934 50.000 0.00 0.00 46.96 1.98
674 841 2.906047 GCGATTTGAGCCGCTAGAT 58.094 52.632 0.00 0.00 46.96 1.98
675 842 4.420143 GCGATTTGAGCCGCTAGA 57.580 55.556 0.00 0.00 46.96 2.43
680 847 0.028505 CATTGGAGCGATTTGAGCCG 59.971 55.000 0.00 0.00 34.64 5.52
681 848 1.098050 ACATTGGAGCGATTTGAGCC 58.902 50.000 0.00 0.00 34.64 4.70
682 849 2.162208 TCAACATTGGAGCGATTTGAGC 59.838 45.455 0.00 0.00 0.00 4.26
683 850 4.012319 CTCAACATTGGAGCGATTTGAG 57.988 45.455 0.00 0.00 35.42 3.02
692 859 2.361757 TGTTTGGTGCTCAACATTGGAG 59.638 45.455 0.00 0.00 34.67 3.86
693 860 2.382882 TGTTTGGTGCTCAACATTGGA 58.617 42.857 0.00 0.00 34.67 3.53
694 861 2.886862 TGTTTGGTGCTCAACATTGG 57.113 45.000 0.00 0.00 34.67 3.16
695 862 3.719924 ACATGTTTGGTGCTCAACATTG 58.280 40.909 0.00 2.71 34.67 2.82
696 863 4.405116 AACATGTTTGGTGCTCAACATT 57.595 36.364 4.92 0.00 34.67 2.71
697 864 4.405116 AAACATGTTTGGTGCTCAACAT 57.595 36.364 22.71 0.00 34.67 2.71
698 865 3.883830 AAACATGTTTGGTGCTCAACA 57.116 38.095 22.71 0.00 34.67 3.33
699 866 4.206200 CGTTAAACATGTTTGGTGCTCAAC 59.794 41.667 29.72 21.95 34.67 3.18
700 867 4.142359 ACGTTAAACATGTTTGGTGCTCAA 60.142 37.500 29.72 13.89 34.23 3.02
701 868 3.378742 ACGTTAAACATGTTTGGTGCTCA 59.621 39.130 29.72 8.67 34.23 4.26
702 869 3.959943 ACGTTAAACATGTTTGGTGCTC 58.040 40.909 29.72 13.82 34.23 4.26
703 870 4.097286 AGAACGTTAAACATGTTTGGTGCT 59.903 37.500 29.72 23.59 34.49 4.40
704 871 4.356289 AGAACGTTAAACATGTTTGGTGC 58.644 39.130 29.72 22.10 34.49 5.01
705 872 8.568732 AATTAGAACGTTAAACATGTTTGGTG 57.431 30.769 29.72 20.76 34.49 4.17
706 873 9.667989 GTAATTAGAACGTTAAACATGTTTGGT 57.332 29.630 29.72 21.46 34.49 3.67
707 874 9.120422 GGTAATTAGAACGTTAAACATGTTTGG 57.880 33.333 29.72 20.90 34.49 3.28
708 875 9.120422 GGGTAATTAGAACGTTAAACATGTTTG 57.880 33.333 29.72 17.57 34.49 2.93
709 876 8.848182 TGGGTAATTAGAACGTTAAACATGTTT 58.152 29.630 25.99 25.99 34.49 2.83
710 877 8.291740 GTGGGTAATTAGAACGTTAAACATGTT 58.708 33.333 4.92 4.92 37.32 2.71
711 878 7.094677 GGTGGGTAATTAGAACGTTAAACATGT 60.095 37.037 0.00 0.00 0.00 3.21
712 879 7.094720 TGGTGGGTAATTAGAACGTTAAACATG 60.095 37.037 0.00 0.00 0.00 3.21
713 880 6.941436 TGGTGGGTAATTAGAACGTTAAACAT 59.059 34.615 0.00 0.00 0.00 2.71
714 881 6.204495 GTGGTGGGTAATTAGAACGTTAAACA 59.796 38.462 0.00 0.00 0.00 2.83
715 882 6.427853 AGTGGTGGGTAATTAGAACGTTAAAC 59.572 38.462 0.00 0.00 0.00 2.01
716 883 6.427547 CAGTGGTGGGTAATTAGAACGTTAAA 59.572 38.462 0.00 0.00 0.00 1.52
717 884 5.933463 CAGTGGTGGGTAATTAGAACGTTAA 59.067 40.000 0.00 0.00 0.00 2.01
718 885 5.481105 CAGTGGTGGGTAATTAGAACGTTA 58.519 41.667 0.00 0.00 0.00 3.18
719 886 4.320870 CAGTGGTGGGTAATTAGAACGTT 58.679 43.478 0.00 0.00 0.00 3.99
720 887 3.867216 GCAGTGGTGGGTAATTAGAACGT 60.867 47.826 0.00 0.00 0.00 3.99
721 888 2.676342 GCAGTGGTGGGTAATTAGAACG 59.324 50.000 0.00 0.00 0.00 3.95
722 889 3.014623 GGCAGTGGTGGGTAATTAGAAC 58.985 50.000 0.00 0.00 0.00 3.01
723 890 2.645297 TGGCAGTGGTGGGTAATTAGAA 59.355 45.455 0.00 0.00 0.00 2.10
724 891 2.270858 TGGCAGTGGTGGGTAATTAGA 58.729 47.619 0.00 0.00 0.00 2.10
725 892 2.799126 TGGCAGTGGTGGGTAATTAG 57.201 50.000 0.00 0.00 0.00 1.73
726 893 3.360867 CAATGGCAGTGGTGGGTAATTA 58.639 45.455 7.12 0.00 0.00 1.40
727 894 2.178580 CAATGGCAGTGGTGGGTAATT 58.821 47.619 7.12 0.00 0.00 1.40
728 895 1.619432 CCAATGGCAGTGGTGGGTAAT 60.619 52.381 25.07 0.00 0.00 1.89
729 896 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.000 25.07 0.00 0.00 2.85
730 897 1.382240 CCAATGGCAGTGGTGGGTA 59.618 57.895 25.07 0.00 0.00 3.69
731 898 2.118076 CCAATGGCAGTGGTGGGT 59.882 61.111 25.07 0.00 0.00 4.51
736 903 4.674101 CGTGTTTATAACCAATGGCAGTGG 60.674 45.833 30.65 30.65 42.28 4.00
737 904 4.411327 CGTGTTTATAACCAATGGCAGTG 58.589 43.478 8.18 8.18 0.00 3.66
738 905 3.119637 GCGTGTTTATAACCAATGGCAGT 60.120 43.478 0.00 0.00 0.00 4.40
739 906 3.128589 AGCGTGTTTATAACCAATGGCAG 59.871 43.478 0.00 0.00 0.00 4.85
740 907 3.085533 AGCGTGTTTATAACCAATGGCA 58.914 40.909 0.00 0.00 0.00 4.92
741 908 3.775661 AGCGTGTTTATAACCAATGGC 57.224 42.857 0.00 0.00 0.00 4.40
742 909 5.571357 GTCAAAGCGTGTTTATAACCAATGG 59.429 40.000 0.00 0.00 0.00 3.16
743 910 6.378582 AGTCAAAGCGTGTTTATAACCAATG 58.621 36.000 0.00 0.00 0.00 2.82
744 911 6.205853 TGAGTCAAAGCGTGTTTATAACCAAT 59.794 34.615 0.00 0.00 0.00 3.16
745 912 5.527951 TGAGTCAAAGCGTGTTTATAACCAA 59.472 36.000 0.00 0.00 0.00 3.67
746 913 5.057819 TGAGTCAAAGCGTGTTTATAACCA 58.942 37.500 0.00 0.00 0.00 3.67
747 914 5.600908 TGAGTCAAAGCGTGTTTATAACC 57.399 39.130 0.00 0.00 0.00 2.85
748 915 5.558888 CGTTGAGTCAAAGCGTGTTTATAAC 59.441 40.000 7.25 0.00 0.00 1.89
749 916 5.672051 CGTTGAGTCAAAGCGTGTTTATAA 58.328 37.500 7.25 0.00 0.00 0.98
750 917 4.376615 GCGTTGAGTCAAAGCGTGTTTATA 60.377 41.667 24.53 0.00 38.77 0.98
751 918 3.606153 GCGTTGAGTCAAAGCGTGTTTAT 60.606 43.478 24.53 0.00 38.77 1.40
752 919 2.285950 GCGTTGAGTCAAAGCGTGTTTA 60.286 45.455 24.53 0.00 38.77 2.01
753 920 1.531058 GCGTTGAGTCAAAGCGTGTTT 60.531 47.619 24.53 0.00 38.77 2.83
754 921 0.027586 GCGTTGAGTCAAAGCGTGTT 59.972 50.000 24.53 0.00 38.77 3.32
755 922 1.641677 GCGTTGAGTCAAAGCGTGT 59.358 52.632 24.53 0.00 38.77 4.49
756 923 4.496898 GCGTTGAGTCAAAGCGTG 57.503 55.556 24.53 6.92 38.77 5.34
759 926 1.666189 GGGATAGCGTTGAGTCAAAGC 59.334 52.381 29.31 29.31 46.07 3.51
760 927 3.252974 AGGGATAGCGTTGAGTCAAAG 57.747 47.619 13.71 13.71 0.00 2.77
761 928 3.007506 TCAAGGGATAGCGTTGAGTCAAA 59.992 43.478 7.25 0.00 0.00 2.69
762 929 2.565391 TCAAGGGATAGCGTTGAGTCAA 59.435 45.455 0.08 0.08 0.00 3.18
763 930 2.176045 TCAAGGGATAGCGTTGAGTCA 58.824 47.619 0.00 0.00 0.00 3.41
764 931 2.961526 TCAAGGGATAGCGTTGAGTC 57.038 50.000 0.00 0.00 0.00 3.36
765 932 3.695830 TTTCAAGGGATAGCGTTGAGT 57.304 42.857 0.00 0.00 32.00 3.41
766 933 4.272018 CAGATTTCAAGGGATAGCGTTGAG 59.728 45.833 0.00 0.00 32.00 3.02
767 934 4.191544 CAGATTTCAAGGGATAGCGTTGA 58.808 43.478 0.00 0.00 0.00 3.18
768 935 3.242870 GCAGATTTCAAGGGATAGCGTTG 60.243 47.826 0.00 0.00 0.00 4.10
769 936 2.945668 GCAGATTTCAAGGGATAGCGTT 59.054 45.455 0.00 0.00 0.00 4.84
770 937 2.565841 GCAGATTTCAAGGGATAGCGT 58.434 47.619 0.00 0.00 0.00 5.07
771 938 1.876156 GGCAGATTTCAAGGGATAGCG 59.124 52.381 0.00 0.00 0.00 4.26
772 939 1.876156 CGGCAGATTTCAAGGGATAGC 59.124 52.381 0.00 0.00 0.00 2.97
773 940 2.874701 CACGGCAGATTTCAAGGGATAG 59.125 50.000 0.00 0.00 0.00 2.08
774 941 2.238646 ACACGGCAGATTTCAAGGGATA 59.761 45.455 0.00 0.00 0.00 2.59
775 942 1.004745 ACACGGCAGATTTCAAGGGAT 59.995 47.619 0.00 0.00 0.00 3.85
776 943 0.400213 ACACGGCAGATTTCAAGGGA 59.600 50.000 0.00 0.00 0.00 4.20
777 944 2.107950 TACACGGCAGATTTCAAGGG 57.892 50.000 0.00 0.00 0.00 3.95
778 945 4.701956 AATTACACGGCAGATTTCAAGG 57.298 40.909 0.00 0.00 0.00 3.61
779 946 9.599322 GATATTAATTACACGGCAGATTTCAAG 57.401 33.333 0.00 0.00 0.00 3.02
780 947 8.564574 GGATATTAATTACACGGCAGATTTCAA 58.435 33.333 0.00 0.00 0.00 2.69
781 948 7.936847 AGGATATTAATTACACGGCAGATTTCA 59.063 33.333 0.00 0.00 0.00 2.69
782 949 8.324163 AGGATATTAATTACACGGCAGATTTC 57.676 34.615 0.00 0.00 0.00 2.17
783 950 9.216117 GTAGGATATTAATTACACGGCAGATTT 57.784 33.333 0.00 0.00 0.00 2.17
784 951 7.822822 GGTAGGATATTAATTACACGGCAGATT 59.177 37.037 0.00 0.00 0.00 2.40
785 952 7.038587 TGGTAGGATATTAATTACACGGCAGAT 60.039 37.037 0.00 0.00 0.00 2.90
786 953 6.268158 TGGTAGGATATTAATTACACGGCAGA 59.732 38.462 0.00 0.00 0.00 4.26
787 954 6.460781 TGGTAGGATATTAATTACACGGCAG 58.539 40.000 0.00 0.00 0.00 4.85
788 955 6.422344 TGGTAGGATATTAATTACACGGCA 57.578 37.500 0.00 0.00 0.00 5.69
789 956 7.065443 GGAATGGTAGGATATTAATTACACGGC 59.935 40.741 0.00 0.00 0.00 5.68
790 957 7.551617 GGGAATGGTAGGATATTAATTACACGG 59.448 40.741 0.00 0.00 0.00 4.94
791 958 7.277098 CGGGAATGGTAGGATATTAATTACACG 59.723 40.741 0.00 0.00 0.00 4.49
792 959 7.065443 GCGGGAATGGTAGGATATTAATTACAC 59.935 40.741 0.00 0.00 0.00 2.90
793 960 7.107542 GCGGGAATGGTAGGATATTAATTACA 58.892 38.462 0.00 0.00 0.00 2.41
794 961 6.257193 CGCGGGAATGGTAGGATATTAATTAC 59.743 42.308 0.00 0.00 0.00 1.89
795 962 6.154877 TCGCGGGAATGGTAGGATATTAATTA 59.845 38.462 6.13 0.00 0.00 1.40
796 963 5.046159 TCGCGGGAATGGTAGGATATTAATT 60.046 40.000 6.13 0.00 0.00 1.40
797 964 4.468510 TCGCGGGAATGGTAGGATATTAAT 59.531 41.667 6.13 0.00 0.00 1.40
798 965 3.833650 TCGCGGGAATGGTAGGATATTAA 59.166 43.478 6.13 0.00 0.00 1.40
799 966 3.433343 TCGCGGGAATGGTAGGATATTA 58.567 45.455 6.13 0.00 0.00 0.98
800 967 2.253610 TCGCGGGAATGGTAGGATATT 58.746 47.619 6.13 0.00 0.00 1.28
801 968 1.933021 TCGCGGGAATGGTAGGATAT 58.067 50.000 6.13 0.00 0.00 1.63
802 969 1.707106 TTCGCGGGAATGGTAGGATA 58.293 50.000 11.32 0.00 0.00 2.59
803 970 0.834612 TTTCGCGGGAATGGTAGGAT 59.165 50.000 16.24 0.00 30.88 3.24
804 971 0.614294 TTTTCGCGGGAATGGTAGGA 59.386 50.000 16.24 0.00 30.88 2.94
805 972 1.400494 CTTTTTCGCGGGAATGGTAGG 59.600 52.381 16.24 0.00 30.88 3.18
806 973 2.081462 ACTTTTTCGCGGGAATGGTAG 58.919 47.619 16.24 12.35 30.88 3.18
807 974 2.188062 ACTTTTTCGCGGGAATGGTA 57.812 45.000 16.24 0.00 30.88 3.25
808 975 2.188062 TACTTTTTCGCGGGAATGGT 57.812 45.000 16.24 15.65 30.88 3.55
809 976 3.775661 ATTACTTTTTCGCGGGAATGG 57.224 42.857 16.24 11.05 30.88 3.16
810 977 4.728534 TCAATTACTTTTTCGCGGGAATG 58.271 39.130 16.24 8.61 30.88 2.67
811 978 5.576447 ATCAATTACTTTTTCGCGGGAAT 57.424 34.783 16.24 3.49 30.88 3.01
812 979 6.540914 AGATATCAATTACTTTTTCGCGGGAA 59.459 34.615 11.32 11.32 0.00 3.97
813 980 6.053005 AGATATCAATTACTTTTTCGCGGGA 58.947 36.000 6.13 0.00 0.00 5.14
814 981 6.300354 AGATATCAATTACTTTTTCGCGGG 57.700 37.500 6.13 0.00 0.00 6.13
815 982 7.797123 GGTAAGATATCAATTACTTTTTCGCGG 59.203 37.037 6.13 0.00 33.36 6.46
816 983 8.332464 TGGTAAGATATCAATTACTTTTTCGCG 58.668 33.333 0.00 0.00 33.36 5.87
817 984 9.997482 TTGGTAAGATATCAATTACTTTTTCGC 57.003 29.630 5.32 0.00 33.36 4.70
829 996 8.682710 GCACTTTGGTATTTGGTAAGATATCAA 58.317 33.333 5.32 0.00 29.47 2.57
830 997 7.831690 TGCACTTTGGTATTTGGTAAGATATCA 59.168 33.333 5.32 0.00 0.00 2.15
831 998 8.220755 TGCACTTTGGTATTTGGTAAGATATC 57.779 34.615 0.00 0.00 0.00 1.63
832 999 8.466798 GTTGCACTTTGGTATTTGGTAAGATAT 58.533 33.333 0.00 0.00 0.00 1.63
833 1000 7.448777 TGTTGCACTTTGGTATTTGGTAAGATA 59.551 33.333 0.00 0.00 0.00 1.98
834 1001 6.266558 TGTTGCACTTTGGTATTTGGTAAGAT 59.733 34.615 0.00 0.00 0.00 2.40
835 1002 5.594725 TGTTGCACTTTGGTATTTGGTAAGA 59.405 36.000 0.00 0.00 0.00 2.10
836 1003 5.837437 TGTTGCACTTTGGTATTTGGTAAG 58.163 37.500 0.00 0.00 0.00 2.34
837 1004 5.594725 TCTGTTGCACTTTGGTATTTGGTAA 59.405 36.000 0.00 0.00 0.00 2.85
838 1005 5.133941 TCTGTTGCACTTTGGTATTTGGTA 58.866 37.500 0.00 0.00 0.00 3.25
839 1006 3.957497 TCTGTTGCACTTTGGTATTTGGT 59.043 39.130 0.00 0.00 0.00 3.67
840 1007 4.582701 TCTGTTGCACTTTGGTATTTGG 57.417 40.909 0.00 0.00 0.00 3.28
841 1008 9.669353 GATATATCTGTTGCACTTTGGTATTTG 57.331 33.333 5.42 0.00 0.00 2.32
842 1009 9.632638 AGATATATCTGTTGCACTTTGGTATTT 57.367 29.630 14.60 0.00 35.42 1.40
843 1010 9.632638 AAGATATATCTGTTGCACTTTGGTATT 57.367 29.630 16.01 0.00 37.19 1.89
845 1012 9.542462 GTAAGATATATCTGTTGCACTTTGGTA 57.458 33.333 16.01 0.00 37.19 3.25
846 1013 7.499232 GGTAAGATATATCTGTTGCACTTTGGT 59.501 37.037 16.01 0.00 37.19 3.67
847 1014 7.716998 AGGTAAGATATATCTGTTGCACTTTGG 59.283 37.037 16.01 0.00 37.19 3.28
848 1015 8.668510 AGGTAAGATATATCTGTTGCACTTTG 57.331 34.615 16.01 0.00 37.19 2.77
897 1064 9.699703 TGCAATGCACGTTTATACTATTAGATA 57.300 29.630 2.72 0.00 31.71 1.98
898 1065 8.601845 TGCAATGCACGTTTATACTATTAGAT 57.398 30.769 2.72 0.00 31.71 1.98
915 1082 6.759356 ACTAGTAATAATGTACGTGCAATGCA 59.241 34.615 11.22 2.72 35.60 3.96
916 1083 7.173863 ACTAGTAATAATGTACGTGCAATGC 57.826 36.000 11.22 0.00 0.00 3.56
917 1084 9.459640 ACTACTAGTAATAATGTACGTGCAATG 57.540 33.333 11.22 0.00 0.00 2.82
918 1085 9.459640 CACTACTAGTAATAATGTACGTGCAAT 57.540 33.333 11.22 4.67 0.00 3.56
919 1086 7.433131 GCACTACTAGTAATAATGTACGTGCAA 59.567 37.037 22.85 0.00 38.42 4.08
920 1087 6.914215 GCACTACTAGTAATAATGTACGTGCA 59.086 38.462 22.85 9.28 38.42 4.57
921 1088 7.137426 AGCACTACTAGTAATAATGTACGTGC 58.863 38.462 21.37 21.37 38.59 5.34
938 1105 8.145122 GCAGTAGAGGATAATTTTAGCACTACT 58.855 37.037 13.57 13.57 39.18 2.57
939 1106 7.385478 GGCAGTAGAGGATAATTTTAGCACTAC 59.615 40.741 0.00 0.00 34.25 2.73
954 1121 3.236047 TGTAACAAGTGGCAGTAGAGGA 58.764 45.455 0.00 0.00 0.00 3.71
1001 1168 4.200874 ACAATTGTCCGGCGGATTTTATA 58.799 39.130 33.54 13.81 32.73 0.98
1143 1340 4.568072 TCTTAGCTTTGGTGCCAAGATA 57.432 40.909 3.72 0.22 36.19 1.98
1362 1564 6.521297 TCCCCAAATAGATGGCCTATATAGT 58.479 40.000 3.32 0.00 37.09 2.12
1363 1565 7.456725 CATCCCCAAATAGATGGCCTATATAG 58.543 42.308 3.32 2.46 37.09 1.31
1364 1566 7.392766 CATCCCCAAATAGATGGCCTATATA 57.607 40.000 3.32 0.00 37.09 0.86
1387 1589 1.495574 GCTACTACTCCTCCCTCTCCA 59.504 57.143 0.00 0.00 0.00 3.86
1520 1722 1.000396 GGCATTGGAGGAAGCCAGT 60.000 57.895 0.00 0.00 46.26 4.00
1543 1745 5.376625 TCAAACACTGAGATGTTAGCCTTT 58.623 37.500 0.00 0.00 42.01 3.11
1564 1766 0.036732 ACAAATCTTCGCCCTGCTCA 59.963 50.000 0.00 0.00 0.00 4.26
1627 1829 1.301623 CCTCCCGGTGGTATTTGCA 59.698 57.895 0.00 0.00 0.00 4.08
1878 2080 3.375610 CGATATGGCATAGTAGAGCTCGT 59.624 47.826 13.39 0.00 0.00 4.18
2286 2508 0.526211 CTCGGAAGACGGACATGTCA 59.474 55.000 26.47 2.47 44.45 3.58
2293 2515 1.461091 AACACTGCTCGGAAGACGGA 61.461 55.000 0.00 0.00 44.45 4.69
2357 2582 2.615227 ATTCAGCTCCGGGATGCCAC 62.615 60.000 3.39 0.00 0.00 5.01
2486 2729 1.675641 GTCGCCTTGAAGCCATGGT 60.676 57.895 14.67 0.00 39.19 3.55
2610 2856 2.753452 CTCTGGCATGTTGCTCATCTTT 59.247 45.455 0.00 0.00 44.28 2.52
2623 2869 4.498520 CGTCGCGTCCTCTGGCAT 62.499 66.667 5.77 0.00 0.00 4.40
2667 2914 4.685169 GTTGTACAACTGCATGCTGTAT 57.315 40.909 27.68 20.95 38.25 2.29
2960 3220 4.017499 TCAAAAGGAGGAGAAAATAGGGGG 60.017 45.833 0.00 0.00 0.00 5.40
3036 3300 5.242434 ACCATGCATGTAGTAAAACGAAGA 58.758 37.500 24.58 0.00 0.00 2.87
3186 3624 8.924511 ATGAAGAGGTCAGTTTATTTCAGAAA 57.075 30.769 0.00 0.00 40.43 2.52
3457 5754 1.402259 TGTGCCGTTTTTGAATCACGT 59.598 42.857 0.00 0.00 31.83 4.49
3514 5811 5.992217 ACTTTACCGATGGATTCAGATTAGC 59.008 40.000 0.00 0.00 0.00 3.09
3521 5818 3.264706 TCCCAACTTTACCGATGGATTCA 59.735 43.478 0.00 0.00 34.82 2.57
3522 5819 3.881220 TCCCAACTTTACCGATGGATTC 58.119 45.455 0.00 0.00 34.82 2.52
3530 5827 3.616219 TGAATCCATCCCAACTTTACCG 58.384 45.455 0.00 0.00 0.00 4.02
3559 5856 6.207810 TCACACTGTTTTGTTGTTTTACCTCT 59.792 34.615 0.00 0.00 0.00 3.69
3561 5858 6.207810 TCTCACACTGTTTTGTTGTTTTACCT 59.792 34.615 0.00 0.00 0.00 3.08
3574 5871 3.374058 CAGGTTCGTTTCTCACACTGTTT 59.626 43.478 0.00 0.00 0.00 2.83
3579 5876 2.737252 GGATCAGGTTCGTTTCTCACAC 59.263 50.000 0.00 0.00 0.00 3.82
3638 5942 8.571336 ACCTCAAATTTTGTGTTCTTGATCTAG 58.429 33.333 8.89 0.00 0.00 2.43
3663 5967 5.790593 TCCAGTTGGTCAACATCTTACTAC 58.209 41.667 15.12 0.00 43.47 2.73
3664 5968 6.351881 GGATCCAGTTGGTCAACATCTTACTA 60.352 42.308 6.95 0.00 43.47 1.82
3690 5994 1.901464 GCAAGCGAGTTTGGGGGAA 60.901 57.895 2.11 0.00 0.00 3.97
3692 5996 1.866853 GAAGCAAGCGAGTTTGGGGG 61.867 60.000 2.11 0.00 0.00 5.40
3697 6001 2.223572 CCAAACTGAAGCAAGCGAGTTT 60.224 45.455 11.54 11.54 38.81 2.66
3700 6004 1.196354 CTCCAAACTGAAGCAAGCGAG 59.804 52.381 0.00 0.00 0.00 5.03
3701 6005 1.202639 TCTCCAAACTGAAGCAAGCGA 60.203 47.619 0.00 0.00 0.00 4.93
3702 6006 1.196354 CTCTCCAAACTGAAGCAAGCG 59.804 52.381 0.00 0.00 0.00 4.68
3724 6029 3.420893 TGTGGAAACTGGAACCATCATC 58.579 45.455 0.00 0.00 36.09 2.92
3726 6031 2.441375 TCTGTGGAAACTGGAACCATCA 59.559 45.455 0.00 0.00 36.09 3.07
3744 6049 5.207110 TGTCTTTGTTCTCTCTTCCTCTG 57.793 43.478 0.00 0.00 0.00 3.35
3745 6050 4.283212 CCTGTCTTTGTTCTCTCTTCCTCT 59.717 45.833 0.00 0.00 0.00 3.69
3746 6051 4.282195 TCCTGTCTTTGTTCTCTCTTCCTC 59.718 45.833 0.00 0.00 0.00 3.71
3747 6052 4.227197 TCCTGTCTTTGTTCTCTCTTCCT 58.773 43.478 0.00 0.00 0.00 3.36
3761 6068 0.701310 AACCCAACCCCTCCTGTCTT 60.701 55.000 0.00 0.00 0.00 3.01
3775 6082 0.106419 AACCCGAAGCTCAAAACCCA 60.106 50.000 0.00 0.00 0.00 4.51
3791 6098 0.037790 TTATTTGCAAGGCGCCAACC 60.038 50.000 31.54 16.19 41.33 3.77
3792 6099 2.008752 ATTATTTGCAAGGCGCCAAC 57.991 45.000 31.54 17.93 41.33 3.77
3796 6103 1.136891 AGGGAATTATTTGCAAGGCGC 59.863 47.619 0.00 0.00 42.89 6.53
3953 6260 5.456921 ACATTAGGGAGTGTCCATTCAAT 57.543 39.130 0.00 0.00 38.64 2.57
3965 6272 9.177608 TGACTTGATTGAATTTACATTAGGGAG 57.822 33.333 0.00 0.00 0.00 4.30
3967 6274 9.573133 GTTGACTTGATTGAATTTACATTAGGG 57.427 33.333 0.00 0.00 0.00 3.53
3977 6284 5.139727 TGGTCCTGTTGACTTGATTGAATT 58.860 37.500 0.00 0.00 43.89 2.17
4052 6359 0.038251 TTCGAGTGCACGAGCTCATT 60.038 50.000 15.40 0.00 43.04 2.57
4053 6360 0.457509 CTTCGAGTGCACGAGCTCAT 60.458 55.000 15.40 0.00 43.04 2.90
4054 6361 1.081175 CTTCGAGTGCACGAGCTCA 60.081 57.895 15.40 0.00 43.04 4.26
4055 6362 2.440569 GCTTCGAGTGCACGAGCTC 61.441 63.158 21.86 2.73 43.04 4.09
4056 6363 2.431601 GCTTCGAGTGCACGAGCT 60.432 61.111 21.86 3.51 43.04 4.09
4057 6364 3.482783 GGCTTCGAGTGCACGAGC 61.483 66.667 21.35 21.35 43.04 5.03
4058 6365 2.811317 GGGCTTCGAGTGCACGAG 60.811 66.667 12.01 9.75 43.04 4.18
4062 6369 4.742201 GAGCGGGCTTCGAGTGCA 62.742 66.667 13.17 0.00 42.43 4.57
4064 6371 3.708220 GAGGAGCGGGCTTCGAGTG 62.708 68.421 0.00 0.00 42.43 3.51
4065 6372 3.453679 GAGGAGCGGGCTTCGAGT 61.454 66.667 0.00 0.00 42.43 4.18
4066 6373 4.214327 GGAGGAGCGGGCTTCGAG 62.214 72.222 0.00 0.00 42.43 4.04
4074 6381 4.227134 CATCCACGGGAGGAGCGG 62.227 72.222 0.00 0.00 41.90 5.52
4075 6382 3.432051 GACATCCACGGGAGGAGCG 62.432 68.421 10.87 2.53 41.90 5.03
4076 6383 2.022240 GAGACATCCACGGGAGGAGC 62.022 65.000 10.87 3.75 41.90 4.70
4077 6384 0.396417 AGAGACATCCACGGGAGGAG 60.396 60.000 10.87 1.32 41.90 3.69
4078 6385 0.684479 CAGAGACATCCACGGGAGGA 60.684 60.000 10.87 3.98 43.01 3.71
4079 6386 0.972983 ACAGAGACATCCACGGGAGG 60.973 60.000 3.48 3.48 39.63 4.30
4080 6387 0.174389 CACAGAGACATCCACGGGAG 59.826 60.000 0.00 0.00 34.05 4.30
4081 6388 0.251608 TCACAGAGACATCCACGGGA 60.252 55.000 0.00 0.00 35.55 5.14
4082 6389 0.174389 CTCACAGAGACATCCACGGG 59.826 60.000 0.00 0.00 0.00 5.28
4083 6390 1.177401 TCTCACAGAGACATCCACGG 58.823 55.000 0.00 0.00 33.35 4.94
4084 6391 3.516981 AATCTCACAGAGACATCCACG 57.483 47.619 0.00 0.00 41.76 4.94
4085 6392 7.550551 TGATAAAAATCTCACAGAGACATCCAC 59.449 37.037 0.00 0.00 41.76 4.02
4086 6393 7.623630 TGATAAAAATCTCACAGAGACATCCA 58.376 34.615 0.00 0.00 41.76 3.41
4087 6394 8.498054 TTGATAAAAATCTCACAGAGACATCC 57.502 34.615 0.00 0.00 41.76 3.51
4088 6395 8.121708 GCTTGATAAAAATCTCACAGAGACATC 58.878 37.037 0.00 0.00 41.76 3.06
4089 6396 7.983307 GCTTGATAAAAATCTCACAGAGACAT 58.017 34.615 0.00 0.00 41.76 3.06
4090 6397 7.369803 GCTTGATAAAAATCTCACAGAGACA 57.630 36.000 0.00 0.00 41.76 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.