Multiple sequence alignment - TraesCS2A01G005600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G005600 chr2A 100.000 2563 0 0 1 2563 2712699 2715261 0.000000e+00 4734
1 TraesCS2A01G005600 chr2B 90.988 2297 164 21 292 2563 7688418 7690696 0.000000e+00 3055
2 TraesCS2A01G005600 chr2D 91.371 1750 119 13 398 2127 2961656 2959919 0.000000e+00 2366
3 TraesCS2A01G005600 chr2D 86.341 410 47 5 1 404 2999088 2998682 3.030000e-119 438
4 TraesCS2A01G005600 chr2D 94.505 182 4 1 2385 2560 2959932 2959751 2.510000e-70 276
5 TraesCS2A01G005600 chr1D 84.411 263 33 6 2126 2388 484472712 484472458 4.230000e-63 252
6 TraesCS2A01G005600 chr3D 79.853 273 35 14 2126 2384 559778086 559778352 5.630000e-42 182
7 TraesCS2A01G005600 chr7A 79.623 265 40 11 2120 2380 89091338 89091592 7.290000e-41 178
8 TraesCS2A01G005600 chr7D 77.574 272 49 11 2126 2389 29300720 29300453 1.230000e-33 154
9 TraesCS2A01G005600 chr3B 77.903 267 44 13 2126 2383 555242811 555243071 4.420000e-33 152
10 TraesCS2A01G005600 chr1B 77.444 266 47 10 2126 2383 592215503 592215243 2.050000e-31 147
11 TraesCS2A01G005600 chr6B 76.894 264 51 8 2126 2383 459272268 459272009 9.560000e-30 141
12 TraesCS2A01G005600 chr6B 86.607 112 5 9 2289 2394 274980526 274980633 5.790000e-22 115
13 TraesCS2A01G005600 chr6D 86.408 103 9 5 2289 2388 20303105 20303005 9.700000e-20 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G005600 chr2A 2712699 2715261 2562 False 4734 4734 100.000 1 2563 1 chr2A.!!$F1 2562
1 TraesCS2A01G005600 chr2B 7688418 7690696 2278 False 3055 3055 90.988 292 2563 1 chr2B.!!$F1 2271
2 TraesCS2A01G005600 chr2D 2959751 2961656 1905 True 1321 2366 92.938 398 2560 2 chr2D.!!$R2 2162

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.029681 ATGATCTACTGGTGGGGCCT 60.03 55.0 0.84 0.0 38.35 5.19 F
316 317 0.039617 CAACGGTGGGTACGTCGTTA 60.04 55.0 1.78 0.0 44.83 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1040 1045 1.134250 TGGTGTGTGCTTGCTTGTCTA 60.134 47.619 0.0 0.0 0.0 2.59 R
2270 2298 0.331278 AAAAGCCATCCCGACCATCA 59.669 50.000 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.827087 CACTCTGCCGCCGCTCAT 62.827 66.667 0.00 0.00 35.36 2.90
19 20 4.521062 ACTCTGCCGCCGCTCATC 62.521 66.667 0.00 0.00 35.36 2.92
39 40 3.839432 CCCGCCGACCTCTTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
40 41 3.839432 CCGCCGACCTCTTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
41 42 2.756283 CGCCGACCTCTTCCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
42 43 2.352032 CGCCGACCTCTTCCTCCTT 61.352 63.158 0.00 0.00 0.00 3.36
43 44 1.518302 GCCGACCTCTTCCTCCTTC 59.482 63.158 0.00 0.00 0.00 3.46
44 45 1.962321 GCCGACCTCTTCCTCCTTCC 61.962 65.000 0.00 0.00 0.00 3.46
45 46 1.331399 CCGACCTCTTCCTCCTTCCC 61.331 65.000 0.00 0.00 0.00 3.97
46 47 1.668101 CGACCTCTTCCTCCTTCCCG 61.668 65.000 0.00 0.00 0.00 5.14
47 48 1.306226 ACCTCTTCCTCCTTCCCGG 60.306 63.158 0.00 0.00 0.00 5.73
48 49 2.736826 CCTCTTCCTCCTTCCCGGC 61.737 68.421 0.00 0.00 0.00 6.13
49 50 1.687493 CTCTTCCTCCTTCCCGGCT 60.687 63.158 0.00 0.00 0.00 5.52
50 51 0.397254 CTCTTCCTCCTTCCCGGCTA 60.397 60.000 0.00 0.00 0.00 3.93
51 52 0.686769 TCTTCCTCCTTCCCGGCTAC 60.687 60.000 0.00 0.00 0.00 3.58
52 53 0.976073 CTTCCTCCTTCCCGGCTACA 60.976 60.000 0.00 0.00 0.00 2.74
53 54 1.262640 TTCCTCCTTCCCGGCTACAC 61.263 60.000 0.00 0.00 0.00 2.90
54 55 1.686110 CCTCCTTCCCGGCTACACT 60.686 63.158 0.00 0.00 0.00 3.55
55 56 0.396695 CCTCCTTCCCGGCTACACTA 60.397 60.000 0.00 0.00 0.00 2.74
56 57 1.033574 CTCCTTCCCGGCTACACTAG 58.966 60.000 0.00 0.00 0.00 2.57
57 58 0.333993 TCCTTCCCGGCTACACTAGT 59.666 55.000 0.00 0.00 0.00 2.57
58 59 0.460311 CCTTCCCGGCTACACTAGTG 59.540 60.000 21.44 21.44 0.00 2.74
59 60 0.460311 CTTCCCGGCTACACTAGTGG 59.540 60.000 26.12 10.99 34.19 4.00
60 61 0.040058 TTCCCGGCTACACTAGTGGA 59.960 55.000 26.12 17.96 34.19 4.02
61 62 0.395311 TCCCGGCTACACTAGTGGAG 60.395 60.000 28.11 28.11 44.38 3.86
62 63 0.683504 CCCGGCTACACTAGTGGAGT 60.684 60.000 31.23 12.66 43.47 3.85
70 71 3.383162 ACTAGTGGAGTGAGTGGGG 57.617 57.895 0.00 0.00 36.87 4.96
71 72 0.784495 ACTAGTGGAGTGAGTGGGGA 59.216 55.000 0.00 0.00 36.87 4.81
72 73 1.272760 ACTAGTGGAGTGAGTGGGGAG 60.273 57.143 0.00 0.00 36.87 4.30
73 74 0.041238 TAGTGGAGTGAGTGGGGAGG 59.959 60.000 0.00 0.00 0.00 4.30
74 75 1.536662 GTGGAGTGAGTGGGGAGGT 60.537 63.158 0.00 0.00 0.00 3.85
75 76 1.229209 TGGAGTGAGTGGGGAGGTC 60.229 63.158 0.00 0.00 0.00 3.85
76 77 1.229209 GGAGTGAGTGGGGAGGTCA 60.229 63.158 0.00 0.00 0.00 4.02
77 78 0.618968 GGAGTGAGTGGGGAGGTCAT 60.619 60.000 0.00 0.00 0.00 3.06
78 79 0.539051 GAGTGAGTGGGGAGGTCATG 59.461 60.000 0.00 0.00 0.00 3.07
79 80 0.117140 AGTGAGTGGGGAGGTCATGA 59.883 55.000 0.00 0.00 0.00 3.07
80 81 1.207791 GTGAGTGGGGAGGTCATGAT 58.792 55.000 0.00 0.00 0.00 2.45
81 82 1.139853 GTGAGTGGGGAGGTCATGATC 59.860 57.143 0.00 0.00 0.00 2.92
82 83 1.008815 TGAGTGGGGAGGTCATGATCT 59.991 52.381 8.63 8.63 0.00 2.75
83 84 2.247372 TGAGTGGGGAGGTCATGATCTA 59.753 50.000 8.90 0.00 0.00 1.98
84 85 2.630580 GAGTGGGGAGGTCATGATCTAC 59.369 54.545 10.01 10.01 0.00 2.59
85 86 2.248686 AGTGGGGAGGTCATGATCTACT 59.751 50.000 17.91 10.45 0.00 2.57
86 87 2.366916 GTGGGGAGGTCATGATCTACTG 59.633 54.545 17.91 0.00 0.00 2.74
87 88 1.974236 GGGGAGGTCATGATCTACTGG 59.026 57.143 17.91 0.00 0.00 4.00
88 89 2.683768 GGGAGGTCATGATCTACTGGT 58.316 52.381 17.91 0.00 0.00 4.00
89 90 2.366916 GGGAGGTCATGATCTACTGGTG 59.633 54.545 17.91 0.00 0.00 4.17
90 91 2.366916 GGAGGTCATGATCTACTGGTGG 59.633 54.545 11.28 0.00 0.00 4.61
91 92 2.366916 GAGGTCATGATCTACTGGTGGG 59.633 54.545 8.90 0.00 0.00 4.61
92 93 1.417890 GGTCATGATCTACTGGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
93 94 1.131638 TCATGATCTACTGGTGGGGC 58.868 55.000 0.00 0.00 0.00 5.80
94 95 0.109342 CATGATCTACTGGTGGGGCC 59.891 60.000 0.00 0.00 37.90 5.80
95 96 0.029681 ATGATCTACTGGTGGGGCCT 60.030 55.000 0.84 0.00 38.35 5.19
96 97 0.253160 TGATCTACTGGTGGGGCCTT 60.253 55.000 0.84 0.00 38.35 4.35
97 98 0.919710 GATCTACTGGTGGGGCCTTT 59.080 55.000 0.84 0.00 38.35 3.11
98 99 1.285078 GATCTACTGGTGGGGCCTTTT 59.715 52.381 0.84 0.00 38.35 2.27
99 100 2.047769 TCTACTGGTGGGGCCTTTTA 57.952 50.000 0.84 0.00 38.35 1.52
100 101 2.568979 TCTACTGGTGGGGCCTTTTAT 58.431 47.619 0.84 0.00 38.35 1.40
101 102 3.738434 TCTACTGGTGGGGCCTTTTATA 58.262 45.455 0.84 0.00 38.35 0.98
102 103 3.714798 TCTACTGGTGGGGCCTTTTATAG 59.285 47.826 0.84 0.00 38.35 1.31
103 104 2.568979 ACTGGTGGGGCCTTTTATAGA 58.431 47.619 0.84 0.00 38.35 1.98
104 105 3.131252 ACTGGTGGGGCCTTTTATAGAT 58.869 45.455 0.84 0.00 38.35 1.98
105 106 3.138468 ACTGGTGGGGCCTTTTATAGATC 59.862 47.826 0.84 0.00 38.35 2.75
106 107 3.395941 CTGGTGGGGCCTTTTATAGATCT 59.604 47.826 0.84 0.00 38.35 2.75
107 108 3.791545 TGGTGGGGCCTTTTATAGATCTT 59.208 43.478 0.84 0.00 38.35 2.40
108 109 4.231890 TGGTGGGGCCTTTTATAGATCTTT 59.768 41.667 0.84 0.00 38.35 2.52
109 110 4.584743 GGTGGGGCCTTTTATAGATCTTTG 59.415 45.833 0.84 0.00 0.00 2.77
110 111 5.201243 GTGGGGCCTTTTATAGATCTTTGT 58.799 41.667 0.84 0.00 0.00 2.83
111 112 5.299531 GTGGGGCCTTTTATAGATCTTTGTC 59.700 44.000 0.84 0.00 0.00 3.18
112 113 4.827835 GGGGCCTTTTATAGATCTTTGTCC 59.172 45.833 0.84 0.00 0.00 4.02
113 114 5.445964 GGGCCTTTTATAGATCTTTGTCCA 58.554 41.667 0.84 0.00 0.00 4.02
114 115 6.071320 GGGCCTTTTATAGATCTTTGTCCAT 58.929 40.000 0.84 0.00 0.00 3.41
115 116 6.551227 GGGCCTTTTATAGATCTTTGTCCATT 59.449 38.462 0.84 0.00 0.00 3.16
116 117 7.428826 GGCCTTTTATAGATCTTTGTCCATTG 58.571 38.462 0.00 0.00 0.00 2.82
117 118 6.920210 GCCTTTTATAGATCTTTGTCCATTGC 59.080 38.462 0.00 0.00 0.00 3.56
118 119 7.201857 GCCTTTTATAGATCTTTGTCCATTGCT 60.202 37.037 0.00 0.00 0.00 3.91
119 120 9.342308 CCTTTTATAGATCTTTGTCCATTGCTA 57.658 33.333 0.00 0.00 0.00 3.49
121 122 9.905713 TTTTATAGATCTTTGTCCATTGCTAGT 57.094 29.630 0.00 0.00 0.00 2.57
122 123 9.547753 TTTATAGATCTTTGTCCATTGCTAGTC 57.452 33.333 0.00 0.00 0.00 2.59
123 124 4.775236 AGATCTTTGTCCATTGCTAGTCC 58.225 43.478 0.00 0.00 0.00 3.85
124 125 3.350219 TCTTTGTCCATTGCTAGTCCC 57.650 47.619 0.00 0.00 0.00 4.46
125 126 2.912956 TCTTTGTCCATTGCTAGTCCCT 59.087 45.455 0.00 0.00 0.00 4.20
126 127 3.330701 TCTTTGTCCATTGCTAGTCCCTT 59.669 43.478 0.00 0.00 0.00 3.95
127 128 3.350219 TTGTCCATTGCTAGTCCCTTC 57.650 47.619 0.00 0.00 0.00 3.46
128 129 1.559682 TGTCCATTGCTAGTCCCTTCC 59.440 52.381 0.00 0.00 0.00 3.46
129 130 0.830648 TCCATTGCTAGTCCCTTCCG 59.169 55.000 0.00 0.00 0.00 4.30
130 131 0.179045 CCATTGCTAGTCCCTTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
131 132 0.541863 CATTGCTAGTCCCTTCCGGT 59.458 55.000 0.00 0.00 0.00 5.28
132 133 0.541863 ATTGCTAGTCCCTTCCGGTG 59.458 55.000 0.00 0.00 0.00 4.94
133 134 1.550130 TTGCTAGTCCCTTCCGGTGG 61.550 60.000 0.00 5.20 0.00 4.61
134 135 1.988406 GCTAGTCCCTTCCGGTGGT 60.988 63.158 0.00 0.00 0.00 4.16
135 136 1.898154 CTAGTCCCTTCCGGTGGTG 59.102 63.158 0.00 0.24 0.00 4.17
136 137 1.611261 TAGTCCCTTCCGGTGGTGG 60.611 63.158 0.00 0.00 0.00 4.61
137 138 2.390777 TAGTCCCTTCCGGTGGTGGT 62.391 60.000 0.00 0.00 0.00 4.16
138 139 1.914764 GTCCCTTCCGGTGGTGGTA 60.915 63.158 0.00 0.00 0.00 3.25
139 140 1.152074 TCCCTTCCGGTGGTGGTAA 60.152 57.895 0.00 0.00 0.00 2.85
140 141 1.196104 TCCCTTCCGGTGGTGGTAAG 61.196 60.000 0.00 0.00 0.00 2.34
141 142 1.298667 CCTTCCGGTGGTGGTAAGG 59.701 63.158 0.00 0.63 33.21 2.69
142 143 1.376812 CTTCCGGTGGTGGTAAGGC 60.377 63.158 0.00 0.00 0.00 4.35
143 144 3.242897 TTCCGGTGGTGGTAAGGCG 62.243 63.158 0.00 0.00 0.00 5.52
144 145 3.697747 CCGGTGGTGGTAAGGCGA 61.698 66.667 0.00 0.00 0.00 5.54
145 146 2.433664 CGGTGGTGGTAAGGCGAC 60.434 66.667 0.00 0.00 0.00 5.19
146 147 2.433664 GGTGGTGGTAAGGCGACG 60.434 66.667 0.00 0.00 0.00 5.12
147 148 2.341176 GTGGTGGTAAGGCGACGT 59.659 61.111 0.00 0.00 0.00 4.34
148 149 1.301165 GTGGTGGTAAGGCGACGTT 60.301 57.895 0.00 0.00 0.00 3.99
149 150 1.005867 TGGTGGTAAGGCGACGTTC 60.006 57.895 0.00 0.00 0.00 3.95
150 151 1.005867 GGTGGTAAGGCGACGTTCA 60.006 57.895 0.00 0.00 0.00 3.18
151 152 1.012486 GGTGGTAAGGCGACGTTCAG 61.012 60.000 0.00 0.00 0.00 3.02
152 153 0.319297 GTGGTAAGGCGACGTTCAGT 60.319 55.000 0.00 0.00 0.00 3.41
153 154 1.068333 GTGGTAAGGCGACGTTCAGTA 60.068 52.381 0.00 0.00 0.00 2.74
154 155 1.612950 TGGTAAGGCGACGTTCAGTAA 59.387 47.619 0.00 0.00 0.00 2.24
155 156 2.231964 TGGTAAGGCGACGTTCAGTAAT 59.768 45.455 0.00 0.00 0.00 1.89
156 157 2.601763 GGTAAGGCGACGTTCAGTAATG 59.398 50.000 0.00 0.00 0.00 1.90
157 158 1.722011 AAGGCGACGTTCAGTAATGG 58.278 50.000 0.00 0.00 0.00 3.16
158 159 0.606604 AGGCGACGTTCAGTAATGGT 59.393 50.000 0.00 0.00 0.00 3.55
159 160 1.001633 AGGCGACGTTCAGTAATGGTT 59.998 47.619 0.00 0.00 0.00 3.67
160 161 1.392510 GGCGACGTTCAGTAATGGTTC 59.607 52.381 0.00 0.00 0.00 3.62
161 162 1.392510 GCGACGTTCAGTAATGGTTCC 59.607 52.381 0.00 0.00 0.00 3.62
162 163 2.929592 GCGACGTTCAGTAATGGTTCCT 60.930 50.000 0.00 0.00 0.00 3.36
163 164 2.921754 CGACGTTCAGTAATGGTTCCTC 59.078 50.000 0.00 0.00 0.00 3.71
164 165 3.367087 CGACGTTCAGTAATGGTTCCTCT 60.367 47.826 0.00 0.00 0.00 3.69
165 166 3.926616 ACGTTCAGTAATGGTTCCTCTG 58.073 45.455 0.00 0.00 0.00 3.35
166 167 3.576982 ACGTTCAGTAATGGTTCCTCTGA 59.423 43.478 0.00 0.00 34.08 3.27
167 168 3.927142 CGTTCAGTAATGGTTCCTCTGAC 59.073 47.826 0.00 0.00 35.36 3.51
168 169 4.322049 CGTTCAGTAATGGTTCCTCTGACT 60.322 45.833 0.00 0.00 35.36 3.41
169 170 5.552178 GTTCAGTAATGGTTCCTCTGACTT 58.448 41.667 0.00 0.00 35.36 3.01
170 171 5.407407 TCAGTAATGGTTCCTCTGACTTC 57.593 43.478 0.00 0.00 31.51 3.01
171 172 4.223032 TCAGTAATGGTTCCTCTGACTTCC 59.777 45.833 0.00 0.00 31.51 3.46
172 173 4.223923 CAGTAATGGTTCCTCTGACTTCCT 59.776 45.833 0.00 0.00 0.00 3.36
173 174 3.990959 AATGGTTCCTCTGACTTCCTC 57.009 47.619 0.00 0.00 0.00 3.71
174 175 2.704190 TGGTTCCTCTGACTTCCTCT 57.296 50.000 0.00 0.00 0.00 3.69
175 176 2.530701 TGGTTCCTCTGACTTCCTCTC 58.469 52.381 0.00 0.00 0.00 3.20
176 177 1.828595 GGTTCCTCTGACTTCCTCTCC 59.171 57.143 0.00 0.00 0.00 3.71
177 178 2.530701 GTTCCTCTGACTTCCTCTCCA 58.469 52.381 0.00 0.00 0.00 3.86
178 179 2.495669 GTTCCTCTGACTTCCTCTCCAG 59.504 54.545 0.00 0.00 0.00 3.86
179 180 0.823460 CCTCTGACTTCCTCTCCAGC 59.177 60.000 0.00 0.00 0.00 4.85
180 181 0.823460 CTCTGACTTCCTCTCCAGCC 59.177 60.000 0.00 0.00 0.00 4.85
181 182 0.411452 TCTGACTTCCTCTCCAGCCT 59.589 55.000 0.00 0.00 0.00 4.58
182 183 0.823460 CTGACTTCCTCTCCAGCCTC 59.177 60.000 0.00 0.00 0.00 4.70
183 184 0.967887 TGACTTCCTCTCCAGCCTCG 60.968 60.000 0.00 0.00 0.00 4.63
184 185 1.671901 GACTTCCTCTCCAGCCTCGG 61.672 65.000 0.00 0.00 0.00 4.63
185 186 3.077556 TTCCTCTCCAGCCTCGGC 61.078 66.667 0.00 0.00 42.33 5.54
186 187 3.905153 TTCCTCTCCAGCCTCGGCA 62.905 63.158 11.02 0.00 44.88 5.69
187 188 3.847602 CCTCTCCAGCCTCGGCAG 61.848 72.222 11.02 1.58 44.88 4.85
188 189 3.073735 CTCTCCAGCCTCGGCAGT 61.074 66.667 11.02 0.00 44.88 4.40
189 190 3.368190 CTCTCCAGCCTCGGCAGTG 62.368 68.421 11.02 0.35 44.88 3.66
195 196 4.735132 GCCTCGGCAGTGCGTGTA 62.735 66.667 9.45 0.00 41.49 2.90
196 197 2.184322 CCTCGGCAGTGCGTGTAT 59.816 61.111 9.45 0.00 0.00 2.29
197 198 1.447838 CCTCGGCAGTGCGTGTATT 60.448 57.895 9.45 0.00 0.00 1.89
198 199 1.695893 CCTCGGCAGTGCGTGTATTG 61.696 60.000 9.45 0.00 0.00 1.90
199 200 1.005512 TCGGCAGTGCGTGTATTGT 60.006 52.632 9.45 0.00 0.00 2.71
200 201 1.011968 TCGGCAGTGCGTGTATTGTC 61.012 55.000 9.45 0.00 0.00 3.18
201 202 1.419922 GGCAGTGCGTGTATTGTCG 59.580 57.895 9.45 0.00 0.00 4.35
202 203 1.011968 GGCAGTGCGTGTATTGTCGA 61.012 55.000 9.45 0.00 0.00 4.20
203 204 0.787787 GCAGTGCGTGTATTGTCGAA 59.212 50.000 0.00 0.00 0.00 3.71
204 205 1.193650 GCAGTGCGTGTATTGTCGAAA 59.806 47.619 0.00 0.00 0.00 3.46
205 206 2.349060 GCAGTGCGTGTATTGTCGAAAA 60.349 45.455 0.00 0.00 0.00 2.29
206 207 3.666902 GCAGTGCGTGTATTGTCGAAAAT 60.667 43.478 6.02 6.02 0.00 1.82
207 208 4.434989 GCAGTGCGTGTATTGTCGAAAATA 60.435 41.667 3.81 3.81 0.00 1.40
208 209 5.248087 CAGTGCGTGTATTGTCGAAAATAG 58.752 41.667 8.34 0.00 0.00 1.73
209 210 5.061684 CAGTGCGTGTATTGTCGAAAATAGA 59.938 40.000 8.34 4.66 0.00 1.98
210 211 5.810587 AGTGCGTGTATTGTCGAAAATAGAT 59.189 36.000 8.34 0.00 0.00 1.98
211 212 6.312918 AGTGCGTGTATTGTCGAAAATAGATT 59.687 34.615 8.34 0.00 0.00 2.40
212 213 6.408039 GTGCGTGTATTGTCGAAAATAGATTG 59.592 38.462 8.34 5.94 0.00 2.67
213 214 5.901884 GCGTGTATTGTCGAAAATAGATTGG 59.098 40.000 8.34 3.26 0.00 3.16
214 215 6.456449 GCGTGTATTGTCGAAAATAGATTGGT 60.456 38.462 8.34 0.00 0.00 3.67
215 216 7.461107 CGTGTATTGTCGAAAATAGATTGGTT 58.539 34.615 8.34 0.00 0.00 3.67
216 217 7.425309 CGTGTATTGTCGAAAATAGATTGGTTG 59.575 37.037 8.34 0.00 0.00 3.77
217 218 7.696453 GTGTATTGTCGAAAATAGATTGGTTGG 59.304 37.037 8.34 0.00 0.00 3.77
218 219 7.608376 TGTATTGTCGAAAATAGATTGGTTGGA 59.392 33.333 8.34 0.00 0.00 3.53
219 220 5.873179 TGTCGAAAATAGATTGGTTGGAC 57.127 39.130 0.00 0.00 0.00 4.02
220 221 5.309638 TGTCGAAAATAGATTGGTTGGACA 58.690 37.500 0.00 0.00 0.00 4.02
221 222 5.943416 TGTCGAAAATAGATTGGTTGGACAT 59.057 36.000 0.00 0.00 0.00 3.06
222 223 6.128035 TGTCGAAAATAGATTGGTTGGACATG 60.128 38.462 0.00 0.00 0.00 3.21
223 224 5.943416 TCGAAAATAGATTGGTTGGACATGT 59.057 36.000 0.00 0.00 0.00 3.21
224 225 7.065324 GTCGAAAATAGATTGGTTGGACATGTA 59.935 37.037 0.00 0.00 0.00 2.29
225 226 7.279981 TCGAAAATAGATTGGTTGGACATGTAG 59.720 37.037 0.00 0.00 0.00 2.74
226 227 7.467267 CGAAAATAGATTGGTTGGACATGTAGG 60.467 40.741 0.00 0.00 0.00 3.18
227 228 5.975988 ATAGATTGGTTGGACATGTAGGT 57.024 39.130 0.00 0.00 0.00 3.08
228 229 4.222124 AGATTGGTTGGACATGTAGGTC 57.778 45.455 0.00 0.00 37.06 3.85
229 230 3.846588 AGATTGGTTGGACATGTAGGTCT 59.153 43.478 0.00 0.00 37.91 3.85
230 231 4.289672 AGATTGGTTGGACATGTAGGTCTT 59.710 41.667 0.00 0.00 37.91 3.01
231 232 3.695830 TGGTTGGACATGTAGGTCTTC 57.304 47.619 0.00 0.00 37.91 2.87
232 233 2.976185 TGGTTGGACATGTAGGTCTTCA 59.024 45.455 0.00 0.00 37.91 3.02
233 234 3.392947 TGGTTGGACATGTAGGTCTTCAA 59.607 43.478 0.00 0.00 37.91 2.69
234 235 4.042809 TGGTTGGACATGTAGGTCTTCAAT 59.957 41.667 0.00 0.00 37.91 2.57
235 236 5.249622 TGGTTGGACATGTAGGTCTTCAATA 59.750 40.000 0.00 0.00 37.91 1.90
236 237 6.069673 TGGTTGGACATGTAGGTCTTCAATAT 60.070 38.462 0.00 0.00 37.91 1.28
237 238 6.828785 GGTTGGACATGTAGGTCTTCAATATT 59.171 38.462 0.00 0.00 37.91 1.28
238 239 7.012421 GGTTGGACATGTAGGTCTTCAATATTC 59.988 40.741 0.00 0.00 37.91 1.75
239 240 6.280643 TGGACATGTAGGTCTTCAATATTCG 58.719 40.000 0.00 0.00 37.91 3.34
240 241 6.127168 TGGACATGTAGGTCTTCAATATTCGT 60.127 38.462 0.00 0.00 37.91 3.85
241 242 6.761714 GGACATGTAGGTCTTCAATATTCGTT 59.238 38.462 0.00 0.00 37.91 3.85
242 243 7.254455 GGACATGTAGGTCTTCAATATTCGTTG 60.254 40.741 0.00 0.00 37.91 4.10
243 244 6.037172 ACATGTAGGTCTTCAATATTCGTTGC 59.963 38.462 0.00 0.00 0.00 4.17
244 245 5.730550 TGTAGGTCTTCAATATTCGTTGCT 58.269 37.500 0.00 0.00 0.00 3.91
245 246 6.170506 TGTAGGTCTTCAATATTCGTTGCTT 58.829 36.000 0.00 0.00 0.00 3.91
246 247 5.803020 AGGTCTTCAATATTCGTTGCTTC 57.197 39.130 0.00 0.00 0.00 3.86
247 248 5.245531 AGGTCTTCAATATTCGTTGCTTCA 58.754 37.500 0.00 0.00 0.00 3.02
248 249 5.352569 AGGTCTTCAATATTCGTTGCTTCAG 59.647 40.000 0.00 0.00 0.00 3.02
249 250 5.024555 GTCTTCAATATTCGTTGCTTCAGC 58.975 41.667 0.00 0.00 42.50 4.26
250 251 4.094887 TCTTCAATATTCGTTGCTTCAGCC 59.905 41.667 0.00 0.00 41.18 4.85
251 252 2.682856 TCAATATTCGTTGCTTCAGCCC 59.317 45.455 0.00 0.00 41.18 5.19
252 253 2.684881 CAATATTCGTTGCTTCAGCCCT 59.315 45.455 0.00 0.00 41.18 5.19
253 254 2.489938 TATTCGTTGCTTCAGCCCTT 57.510 45.000 0.00 0.00 41.18 3.95
254 255 1.168714 ATTCGTTGCTTCAGCCCTTC 58.831 50.000 0.00 0.00 41.18 3.46
255 256 0.889186 TTCGTTGCTTCAGCCCTTCC 60.889 55.000 0.00 0.00 41.18 3.46
256 257 2.680913 CGTTGCTTCAGCCCTTCCG 61.681 63.158 0.00 0.00 41.18 4.30
257 258 2.034066 TTGCTTCAGCCCTTCCGG 59.966 61.111 0.00 0.00 41.18 5.14
258 259 2.829384 TTGCTTCAGCCCTTCCGGT 61.829 57.895 0.00 0.00 41.18 5.28
259 260 1.485294 TTGCTTCAGCCCTTCCGGTA 61.485 55.000 0.00 0.00 41.18 4.02
260 261 1.153349 GCTTCAGCCCTTCCGGTAG 60.153 63.158 0.00 0.00 34.31 3.18
261 262 1.900545 GCTTCAGCCCTTCCGGTAGT 61.901 60.000 7.37 0.00 34.31 2.73
262 263 0.613777 CTTCAGCCCTTCCGGTAGTT 59.386 55.000 7.37 0.00 0.00 2.24
263 264 0.323629 TTCAGCCCTTCCGGTAGTTG 59.676 55.000 7.37 3.18 0.00 3.16
264 265 0.543410 TCAGCCCTTCCGGTAGTTGA 60.543 55.000 7.37 5.39 0.00 3.18
265 266 0.323629 CAGCCCTTCCGGTAGTTGAA 59.676 55.000 7.37 0.00 0.00 2.69
266 267 0.323957 AGCCCTTCCGGTAGTTGAAC 59.676 55.000 7.37 0.00 0.00 3.18
267 268 1.017701 GCCCTTCCGGTAGTTGAACG 61.018 60.000 7.37 0.00 0.00 3.95
271 272 4.272100 CCGGTAGTTGAACGGTGG 57.728 61.111 0.00 0.00 42.53 4.61
272 273 1.368579 CCGGTAGTTGAACGGTGGT 59.631 57.895 0.00 0.00 42.53 4.16
273 274 0.947180 CCGGTAGTTGAACGGTGGTG 60.947 60.000 0.00 0.00 42.53 4.17
274 275 1.562575 CGGTAGTTGAACGGTGGTGC 61.563 60.000 0.00 0.00 0.00 5.01
275 276 0.250166 GGTAGTTGAACGGTGGTGCT 60.250 55.000 0.00 0.00 0.00 4.40
276 277 1.145803 GTAGTTGAACGGTGGTGCTC 58.854 55.000 0.00 0.00 0.00 4.26
277 278 0.753867 TAGTTGAACGGTGGTGCTCA 59.246 50.000 0.00 0.00 0.00 4.26
278 279 0.107410 AGTTGAACGGTGGTGCTCAA 60.107 50.000 0.00 0.00 0.00 3.02
279 280 0.951558 GTTGAACGGTGGTGCTCAAT 59.048 50.000 0.00 0.00 28.66 2.57
280 281 2.147958 GTTGAACGGTGGTGCTCAATA 58.852 47.619 0.00 0.00 28.66 1.90
281 282 2.550606 GTTGAACGGTGGTGCTCAATAA 59.449 45.455 0.00 0.00 28.66 1.40
282 283 2.422597 TGAACGGTGGTGCTCAATAAG 58.577 47.619 0.00 0.00 0.00 1.73
283 284 1.737793 GAACGGTGGTGCTCAATAAGG 59.262 52.381 0.00 0.00 0.00 2.69
284 285 0.690762 ACGGTGGTGCTCAATAAGGT 59.309 50.000 0.00 0.00 0.00 3.50
285 286 1.338769 ACGGTGGTGCTCAATAAGGTC 60.339 52.381 0.00 0.00 0.00 3.85
286 287 1.066143 CGGTGGTGCTCAATAAGGTCT 60.066 52.381 0.00 0.00 0.00 3.85
287 288 2.633488 GGTGGTGCTCAATAAGGTCTC 58.367 52.381 0.00 0.00 0.00 3.36
288 289 2.633488 GTGGTGCTCAATAAGGTCTCC 58.367 52.381 0.00 0.00 0.00 3.71
289 290 2.237392 GTGGTGCTCAATAAGGTCTCCT 59.763 50.000 0.00 0.00 33.87 3.69
290 291 2.501723 TGGTGCTCAATAAGGTCTCCTC 59.498 50.000 0.00 0.00 30.89 3.71
291 292 2.769095 GGTGCTCAATAAGGTCTCCTCT 59.231 50.000 0.00 0.00 30.89 3.69
292 293 3.431486 GGTGCTCAATAAGGTCTCCTCTG 60.431 52.174 0.00 0.00 30.89 3.35
293 294 2.768527 TGCTCAATAAGGTCTCCTCTGG 59.231 50.000 0.00 0.00 30.89 3.86
294 295 2.484594 GCTCAATAAGGTCTCCTCTGGC 60.485 54.545 0.00 0.00 30.89 4.85
295 296 3.037549 CTCAATAAGGTCTCCTCTGGCT 58.962 50.000 0.00 0.00 30.89 4.75
296 297 3.454082 CTCAATAAGGTCTCCTCTGGCTT 59.546 47.826 0.00 0.00 30.89 4.35
297 298 3.452627 TCAATAAGGTCTCCTCTGGCTTC 59.547 47.826 0.00 0.00 30.89 3.86
298 299 2.623418 TAAGGTCTCCTCTGGCTTCA 57.377 50.000 0.00 0.00 30.89 3.02
308 309 1.122632 TCTGGCTTCAACGGTGGGTA 61.123 55.000 0.00 0.00 0.00 3.69
309 310 0.953960 CTGGCTTCAACGGTGGGTAC 60.954 60.000 0.00 0.00 0.00 3.34
313 314 1.005294 CTTCAACGGTGGGTACGTCG 61.005 60.000 0.00 0.00 44.83 5.12
316 317 0.039617 CAACGGTGGGTACGTCGTTA 60.040 55.000 1.78 0.00 44.83 3.18
342 343 2.348104 CGATGAGACCGGGTGGACA 61.348 63.158 3.30 1.93 39.21 4.02
345 346 0.836400 ATGAGACCGGGTGGACAGTT 60.836 55.000 3.30 0.00 39.21 3.16
346 347 1.052124 TGAGACCGGGTGGACAGTTT 61.052 55.000 3.30 0.00 39.21 2.66
347 348 0.971386 GAGACCGGGTGGACAGTTTA 59.029 55.000 3.30 0.00 39.21 2.01
363 364 5.140454 ACAGTTTATTGCCTTTTCCTCTGT 58.860 37.500 0.00 0.00 0.00 3.41
366 367 6.655003 CAGTTTATTGCCTTTTCCTCTGTAGA 59.345 38.462 0.00 0.00 0.00 2.59
370 371 2.371841 TGCCTTTTCCTCTGTAGAAGCA 59.628 45.455 0.00 0.00 0.00 3.91
378 379 0.905357 TCTGTAGAAGCAAGGGGAGC 59.095 55.000 0.00 0.00 0.00 4.70
393 394 1.480954 GGGAGCTGGTTATGTCTTCGA 59.519 52.381 0.00 0.00 0.00 3.71
423 424 0.308993 GCGCTCCAGCAATAATGTCC 59.691 55.000 0.00 0.00 42.21 4.02
440 441 2.578940 TGTCCCCGATTTGGTTATTCCT 59.421 45.455 0.00 0.00 37.07 3.36
448 449 5.813672 CCGATTTGGTTATTCCTTCGACTTA 59.186 40.000 0.00 0.00 36.59 2.24
458 459 3.314553 TCCTTCGACTTAAGCGAAAGTG 58.685 45.455 24.50 18.55 45.72 3.16
469 470 3.402628 AGCGAAAGTGTAGGTGTGATT 57.597 42.857 0.00 0.00 0.00 2.57
472 473 3.684788 GCGAAAGTGTAGGTGTGATTGAT 59.315 43.478 0.00 0.00 0.00 2.57
518 519 1.266178 TGGATCCTTCGAGCTCAACA 58.734 50.000 15.40 0.00 0.00 3.33
521 522 2.478831 GATCCTTCGAGCTCAACATCC 58.521 52.381 15.40 0.00 0.00 3.51
531 532 2.505819 AGCTCAACATCCCCGATACTTT 59.494 45.455 0.00 0.00 0.00 2.66
577 578 3.136763 CTGCCTATGTGGATGCTACTTG 58.863 50.000 0.00 0.00 38.35 3.16
585 586 2.162408 GTGGATGCTACTTGCTTGTTCC 59.838 50.000 0.00 0.00 43.37 3.62
612 613 1.128200 ACGCAGGGGTAGCAATATCA 58.872 50.000 0.00 0.00 0.00 2.15
630 631 1.028330 CAGCTGGCCATCGACATGTT 61.028 55.000 5.51 0.00 0.00 2.71
673 674 2.311688 GACGTCCCGATGAATGGGCT 62.312 60.000 3.51 0.00 46.92 5.19
677 678 1.134220 GTCCCGATGAATGGGCTGTAA 60.134 52.381 0.00 0.00 46.92 2.41
678 679 1.774254 TCCCGATGAATGGGCTGTAAT 59.226 47.619 0.00 0.00 46.92 1.89
708 709 3.088532 GGGTGGATGTTCTTGTAATGCA 58.911 45.455 0.00 0.00 0.00 3.96
712 713 3.758023 TGGATGTTCTTGTAATGCAGGTG 59.242 43.478 0.00 0.00 0.00 4.00
744 745 6.642707 AATACAAAACATCGGTTCCTTTGA 57.357 33.333 7.26 0.00 35.82 2.69
784 785 5.124776 TGTTCAGTTACTTTGACCACCTTTG 59.875 40.000 0.00 0.00 0.00 2.77
866 867 5.523369 AGCGCCAAGATAATAAGCAAAATC 58.477 37.500 2.29 0.00 0.00 2.17
902 903 3.745480 CGAGAATAAGGGATGTGCATGGT 60.745 47.826 0.00 0.00 0.00 3.55
1007 1012 9.658799 GGTGCTCATCTTTGTGTGTATATATAT 57.341 33.333 0.00 0.00 0.00 0.86
1040 1045 6.106673 CCCTCATCTAAACGTACATTCAGTT 58.893 40.000 0.00 0.00 0.00 3.16
1065 1070 1.066257 GCAAGCACACACCAGTTGG 59.934 57.895 0.00 0.00 42.17 3.77
1075 1080 3.157087 CACACCAGTTGGGCTAATCTTT 58.843 45.455 2.79 0.00 42.05 2.52
1076 1081 3.191371 CACACCAGTTGGGCTAATCTTTC 59.809 47.826 2.79 0.00 42.05 2.62
1077 1082 3.074538 ACACCAGTTGGGCTAATCTTTCT 59.925 43.478 2.79 0.00 42.05 2.52
1078 1083 4.082125 CACCAGTTGGGCTAATCTTTCTT 58.918 43.478 2.79 0.00 42.05 2.52
1198 1204 4.783621 GTGCATCCCGAGGCTGCA 62.784 66.667 14.78 14.78 43.20 4.41
1360 1369 4.457496 CCTCCCGCAGCACACGAT 62.457 66.667 0.00 0.00 0.00 3.73
1463 1472 1.424493 GCATCGAGTTCCTGAAGCGG 61.424 60.000 0.00 0.00 0.00 5.52
1619 1634 9.638176 AATCTTAATTATTCTGCAAGATCCACT 57.362 29.630 2.38 0.00 46.36 4.00
1750 1765 7.680442 AACCAAAGTTTTGTGCAAGTTTAAT 57.320 28.000 0.00 0.00 36.45 1.40
1844 1871 1.922545 GCTAGCGTTCGTTTTATCCGT 59.077 47.619 0.00 0.00 0.00 4.69
1853 1880 3.319755 TCGTTTTATCCGTTGGAGTCAC 58.680 45.455 0.00 0.00 34.05 3.67
1857 1884 0.108992 TATCCGTTGGAGTCACGCAC 60.109 55.000 0.00 0.00 34.05 5.34
1884 1912 7.360113 TGCAGACCAGTATAGTATCAATCAA 57.640 36.000 0.00 0.00 0.00 2.57
1982 2010 3.122613 CACAAGATGCGTCTTCAAGTCTC 59.877 47.826 18.41 0.00 42.73 3.36
2148 2176 3.902086 GCTAGGGAGCCGACGACC 61.902 72.222 0.00 0.00 43.49 4.79
2150 2178 2.753043 TAGGGAGCCGACGACCAC 60.753 66.667 0.00 0.00 0.00 4.16
2191 2219 2.491621 TCTCATGGCGAGACTGCG 59.508 61.111 0.00 0.00 46.18 5.18
2209 2237 2.109126 GCGCTCTGTAGGGGCTTTG 61.109 63.158 0.00 0.00 39.14 2.77
2234 2262 2.646175 TAAGACTGCTCGCGGCCTT 61.646 57.895 6.13 10.02 40.92 4.35
2239 2267 4.980805 TGCTCGCGGCCTTTTCGT 62.981 61.111 6.13 0.00 40.92 3.85
2245 2273 2.813908 CGGCCTTTTCGTCCTCCG 60.814 66.667 0.00 0.00 38.13 4.63
2270 2298 6.476243 AACTTACGACGTTTTCATGCTTAT 57.524 33.333 5.50 0.00 0.00 1.73
2294 2322 0.893727 GTCGGGATGGCTTTTGGTGT 60.894 55.000 0.00 0.00 0.00 4.16
2320 2348 8.619146 TGTAATCTAACTTATGTTTCGGTACG 57.381 34.615 0.00 0.00 45.23 3.67
2325 2353 4.855122 TAACTTATGTTTCGGTACGCTGCA 60.855 41.667 0.00 0.00 44.24 4.41
2350 2378 9.139174 CATGTTGTGGGCTTTATTAAGTTAAAG 57.861 33.333 0.00 4.78 40.56 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.827087 ATGAGCGGCGGCAGAGTG 62.827 66.667 19.21 0.00 43.41 3.51
2 3 4.521062 GATGAGCGGCGGCAGAGT 62.521 66.667 19.21 0.00 43.41 3.24
22 23 3.839432 GAGGAAGAGGTCGGCGGG 61.839 72.222 7.21 0.00 0.00 6.13
23 24 3.839432 GGAGGAAGAGGTCGGCGG 61.839 72.222 7.21 0.00 0.00 6.13
24 25 2.286127 GAAGGAGGAAGAGGTCGGCG 62.286 65.000 0.00 0.00 0.00 6.46
25 26 1.518302 GAAGGAGGAAGAGGTCGGC 59.482 63.158 0.00 0.00 0.00 5.54
26 27 1.331399 GGGAAGGAGGAAGAGGTCGG 61.331 65.000 0.00 0.00 0.00 4.79
27 28 1.668101 CGGGAAGGAGGAAGAGGTCG 61.668 65.000 0.00 0.00 0.00 4.79
28 29 1.331399 CCGGGAAGGAGGAAGAGGTC 61.331 65.000 0.00 0.00 45.00 3.85
29 30 1.306226 CCGGGAAGGAGGAAGAGGT 60.306 63.158 0.00 0.00 45.00 3.85
30 31 2.736826 GCCGGGAAGGAGGAAGAGG 61.737 68.421 2.18 0.00 45.00 3.69
31 32 0.397254 TAGCCGGGAAGGAGGAAGAG 60.397 60.000 2.18 0.00 45.00 2.85
32 33 0.686769 GTAGCCGGGAAGGAGGAAGA 60.687 60.000 2.18 0.00 45.00 2.87
33 34 0.976073 TGTAGCCGGGAAGGAGGAAG 60.976 60.000 2.18 0.00 45.00 3.46
34 35 1.079621 TGTAGCCGGGAAGGAGGAA 59.920 57.895 2.18 0.00 45.00 3.36
35 36 1.684734 GTGTAGCCGGGAAGGAGGA 60.685 63.158 2.18 0.00 45.00 3.71
36 37 0.396695 TAGTGTAGCCGGGAAGGAGG 60.397 60.000 2.18 0.00 45.00 4.30
37 38 1.033574 CTAGTGTAGCCGGGAAGGAG 58.966 60.000 2.18 0.00 45.00 3.69
38 39 0.333993 ACTAGTGTAGCCGGGAAGGA 59.666 55.000 2.18 0.00 45.00 3.36
39 40 0.460311 CACTAGTGTAGCCGGGAAGG 59.540 60.000 15.06 0.00 44.97 3.46
40 41 0.460311 CCACTAGTGTAGCCGGGAAG 59.540 60.000 21.18 0.00 0.00 3.46
41 42 0.040058 TCCACTAGTGTAGCCGGGAA 59.960 55.000 21.18 0.00 0.00 3.97
42 43 0.395311 CTCCACTAGTGTAGCCGGGA 60.395 60.000 21.18 8.71 0.00 5.14
43 44 0.683504 ACTCCACTAGTGTAGCCGGG 60.684 60.000 21.18 8.16 36.93 5.73
44 45 2.883572 ACTCCACTAGTGTAGCCGG 58.116 57.895 21.18 0.00 36.93 6.13
52 53 0.784495 TCCCCACTCACTCCACTAGT 59.216 55.000 0.00 0.00 39.81 2.57
53 54 1.479709 CTCCCCACTCACTCCACTAG 58.520 60.000 0.00 0.00 0.00 2.57
54 55 0.041238 CCTCCCCACTCACTCCACTA 59.959 60.000 0.00 0.00 0.00 2.74
55 56 1.229336 CCTCCCCACTCACTCCACT 60.229 63.158 0.00 0.00 0.00 4.00
56 57 1.536662 ACCTCCCCACTCACTCCAC 60.537 63.158 0.00 0.00 0.00 4.02
57 58 1.229209 GACCTCCCCACTCACTCCA 60.229 63.158 0.00 0.00 0.00 3.86
58 59 0.618968 ATGACCTCCCCACTCACTCC 60.619 60.000 0.00 0.00 0.00 3.85
59 60 0.539051 CATGACCTCCCCACTCACTC 59.461 60.000 0.00 0.00 0.00 3.51
60 61 0.117140 TCATGACCTCCCCACTCACT 59.883 55.000 0.00 0.00 0.00 3.41
61 62 1.139853 GATCATGACCTCCCCACTCAC 59.860 57.143 0.00 0.00 0.00 3.51
62 63 1.008815 AGATCATGACCTCCCCACTCA 59.991 52.381 0.00 0.00 0.00 3.41
63 64 1.799933 AGATCATGACCTCCCCACTC 58.200 55.000 0.00 0.00 0.00 3.51
64 65 2.248686 AGTAGATCATGACCTCCCCACT 59.751 50.000 0.00 0.00 0.00 4.00
65 66 2.366916 CAGTAGATCATGACCTCCCCAC 59.633 54.545 0.00 0.00 0.00 4.61
66 67 2.682594 CAGTAGATCATGACCTCCCCA 58.317 52.381 0.00 0.00 0.00 4.96
67 68 1.974236 CCAGTAGATCATGACCTCCCC 59.026 57.143 0.00 0.00 0.00 4.81
68 69 2.366916 CACCAGTAGATCATGACCTCCC 59.633 54.545 0.00 0.00 0.00 4.30
69 70 2.366916 CCACCAGTAGATCATGACCTCC 59.633 54.545 0.00 0.00 0.00 4.30
70 71 2.366916 CCCACCAGTAGATCATGACCTC 59.633 54.545 0.00 0.00 0.00 3.85
71 72 2.402564 CCCACCAGTAGATCATGACCT 58.597 52.381 0.00 0.00 0.00 3.85
72 73 1.417890 CCCCACCAGTAGATCATGACC 59.582 57.143 0.00 0.00 0.00 4.02
73 74 1.202698 GCCCCACCAGTAGATCATGAC 60.203 57.143 0.00 0.00 0.00 3.06
74 75 1.131638 GCCCCACCAGTAGATCATGA 58.868 55.000 0.00 0.00 0.00 3.07
75 76 0.109342 GGCCCCACCAGTAGATCATG 59.891 60.000 0.00 0.00 38.86 3.07
76 77 0.029681 AGGCCCCACCAGTAGATCAT 60.030 55.000 0.00 0.00 43.14 2.45
77 78 0.253160 AAGGCCCCACCAGTAGATCA 60.253 55.000 0.00 0.00 43.14 2.92
78 79 0.919710 AAAGGCCCCACCAGTAGATC 59.080 55.000 0.00 0.00 43.14 2.75
79 80 1.382914 AAAAGGCCCCACCAGTAGAT 58.617 50.000 0.00 0.00 43.14 1.98
80 81 2.047769 TAAAAGGCCCCACCAGTAGA 57.952 50.000 0.00 0.00 43.14 2.59
81 82 3.714798 TCTATAAAAGGCCCCACCAGTAG 59.285 47.826 0.00 0.00 43.14 2.57
82 83 3.738434 TCTATAAAAGGCCCCACCAGTA 58.262 45.455 0.00 0.00 43.14 2.74
83 84 2.568979 TCTATAAAAGGCCCCACCAGT 58.431 47.619 0.00 0.00 43.14 4.00
84 85 3.395941 AGATCTATAAAAGGCCCCACCAG 59.604 47.826 0.00 0.00 43.14 4.00
85 86 3.403322 AGATCTATAAAAGGCCCCACCA 58.597 45.455 0.00 0.00 43.14 4.17
86 87 4.455070 AAGATCTATAAAAGGCCCCACC 57.545 45.455 0.00 0.00 39.61 4.61
87 88 5.201243 ACAAAGATCTATAAAAGGCCCCAC 58.799 41.667 0.00 0.00 0.00 4.61
88 89 5.445964 GACAAAGATCTATAAAAGGCCCCA 58.554 41.667 0.00 0.00 0.00 4.96
89 90 4.827835 GGACAAAGATCTATAAAAGGCCCC 59.172 45.833 0.00 0.00 0.00 5.80
90 91 5.445964 TGGACAAAGATCTATAAAAGGCCC 58.554 41.667 0.00 0.00 0.00 5.80
91 92 7.428826 CAATGGACAAAGATCTATAAAAGGCC 58.571 38.462 0.00 0.00 0.00 5.19
92 93 6.920210 GCAATGGACAAAGATCTATAAAAGGC 59.080 38.462 0.00 0.00 0.00 4.35
93 94 8.230472 AGCAATGGACAAAGATCTATAAAAGG 57.770 34.615 0.00 0.00 0.00 3.11
95 96 9.905713 ACTAGCAATGGACAAAGATCTATAAAA 57.094 29.630 0.00 0.00 0.00 1.52
96 97 9.547753 GACTAGCAATGGACAAAGATCTATAAA 57.452 33.333 0.00 0.00 0.00 1.40
97 98 8.150945 GGACTAGCAATGGACAAAGATCTATAA 58.849 37.037 0.00 0.00 0.00 0.98
98 99 7.256332 GGGACTAGCAATGGACAAAGATCTATA 60.256 40.741 0.00 0.00 0.00 1.31
99 100 6.465035 GGGACTAGCAATGGACAAAGATCTAT 60.465 42.308 0.00 0.00 0.00 1.98
100 101 5.163301 GGGACTAGCAATGGACAAAGATCTA 60.163 44.000 0.00 0.00 0.00 1.98
101 102 4.384647 GGGACTAGCAATGGACAAAGATCT 60.385 45.833 0.00 0.00 0.00 2.75
102 103 3.879892 GGGACTAGCAATGGACAAAGATC 59.120 47.826 0.00 0.00 0.00 2.75
103 104 3.525199 AGGGACTAGCAATGGACAAAGAT 59.475 43.478 0.00 0.00 36.02 2.40
104 105 2.912956 AGGGACTAGCAATGGACAAAGA 59.087 45.455 0.00 0.00 36.02 2.52
105 106 3.356529 AGGGACTAGCAATGGACAAAG 57.643 47.619 0.00 0.00 36.02 2.77
106 107 3.561313 GGAAGGGACTAGCAATGGACAAA 60.561 47.826 0.00 0.00 38.49 2.83
107 108 2.026262 GGAAGGGACTAGCAATGGACAA 60.026 50.000 0.00 0.00 38.49 3.18
108 109 1.559682 GGAAGGGACTAGCAATGGACA 59.440 52.381 0.00 0.00 38.49 4.02
109 110 1.473434 CGGAAGGGACTAGCAATGGAC 60.473 57.143 0.00 0.00 38.49 4.02
110 111 0.830648 CGGAAGGGACTAGCAATGGA 59.169 55.000 0.00 0.00 38.49 3.41
111 112 3.386543 CGGAAGGGACTAGCAATGG 57.613 57.895 0.00 0.00 38.49 3.16
124 125 1.376812 GCCTTACCACCACCGGAAG 60.377 63.158 9.46 0.00 0.00 3.46
125 126 2.751688 GCCTTACCACCACCGGAA 59.248 61.111 9.46 0.00 0.00 4.30
126 127 3.697747 CGCCTTACCACCACCGGA 61.698 66.667 9.46 0.00 0.00 5.14
127 128 3.697747 TCGCCTTACCACCACCGG 61.698 66.667 0.00 0.00 0.00 5.28
128 129 2.433664 GTCGCCTTACCACCACCG 60.434 66.667 0.00 0.00 0.00 4.94
129 130 2.433664 CGTCGCCTTACCACCACC 60.434 66.667 0.00 0.00 0.00 4.61
130 131 1.287041 GAACGTCGCCTTACCACCAC 61.287 60.000 0.00 0.00 0.00 4.16
131 132 1.005867 GAACGTCGCCTTACCACCA 60.006 57.895 0.00 0.00 0.00 4.17
132 133 1.005867 TGAACGTCGCCTTACCACC 60.006 57.895 0.00 0.00 0.00 4.61
133 134 0.319297 ACTGAACGTCGCCTTACCAC 60.319 55.000 0.00 0.00 0.00 4.16
134 135 1.246649 TACTGAACGTCGCCTTACCA 58.753 50.000 0.00 0.00 0.00 3.25
135 136 2.352503 TTACTGAACGTCGCCTTACC 57.647 50.000 0.00 0.00 0.00 2.85
136 137 2.601763 CCATTACTGAACGTCGCCTTAC 59.398 50.000 0.00 0.00 0.00 2.34
137 138 2.231964 ACCATTACTGAACGTCGCCTTA 59.768 45.455 0.00 0.00 0.00 2.69
138 139 1.001633 ACCATTACTGAACGTCGCCTT 59.998 47.619 0.00 0.00 0.00 4.35
139 140 0.606604 ACCATTACTGAACGTCGCCT 59.393 50.000 0.00 0.00 0.00 5.52
140 141 1.392510 GAACCATTACTGAACGTCGCC 59.607 52.381 0.00 0.00 0.00 5.54
141 142 1.392510 GGAACCATTACTGAACGTCGC 59.607 52.381 0.00 0.00 0.00 5.19
142 143 2.921754 GAGGAACCATTACTGAACGTCG 59.078 50.000 0.00 0.00 0.00 5.12
143 144 3.927142 CAGAGGAACCATTACTGAACGTC 59.073 47.826 0.00 0.00 0.00 4.34
144 145 3.576982 TCAGAGGAACCATTACTGAACGT 59.423 43.478 0.00 0.00 35.20 3.99
145 146 3.927142 GTCAGAGGAACCATTACTGAACG 59.073 47.826 0.00 0.00 38.90 3.95
146 147 5.153950 AGTCAGAGGAACCATTACTGAAC 57.846 43.478 0.00 0.00 38.90 3.18
147 148 5.280011 GGAAGTCAGAGGAACCATTACTGAA 60.280 44.000 0.00 0.00 38.90 3.02
148 149 4.223032 GGAAGTCAGAGGAACCATTACTGA 59.777 45.833 0.00 0.00 35.65 3.41
149 150 4.223923 AGGAAGTCAGAGGAACCATTACTG 59.776 45.833 0.00 0.00 0.00 2.74
150 151 4.430441 AGGAAGTCAGAGGAACCATTACT 58.570 43.478 0.00 0.00 0.00 2.24
151 152 4.468153 AGAGGAAGTCAGAGGAACCATTAC 59.532 45.833 0.00 0.00 0.00 1.89
152 153 4.689062 AGAGGAAGTCAGAGGAACCATTA 58.311 43.478 0.00 0.00 0.00 1.90
153 154 3.517500 GAGAGGAAGTCAGAGGAACCATT 59.482 47.826 0.00 0.00 0.00 3.16
154 155 3.103742 GAGAGGAAGTCAGAGGAACCAT 58.896 50.000 0.00 0.00 0.00 3.55
155 156 2.530701 GAGAGGAAGTCAGAGGAACCA 58.469 52.381 0.00 0.00 0.00 3.67
156 157 1.828595 GGAGAGGAAGTCAGAGGAACC 59.171 57.143 0.00 0.00 0.00 3.62
157 158 2.495669 CTGGAGAGGAAGTCAGAGGAAC 59.504 54.545 0.00 0.00 0.00 3.62
158 159 2.813907 CTGGAGAGGAAGTCAGAGGAA 58.186 52.381 0.00 0.00 0.00 3.36
159 160 1.618345 GCTGGAGAGGAAGTCAGAGGA 60.618 57.143 0.00 0.00 0.00 3.71
160 161 0.823460 GCTGGAGAGGAAGTCAGAGG 59.177 60.000 0.00 0.00 0.00 3.69
161 162 0.823460 GGCTGGAGAGGAAGTCAGAG 59.177 60.000 0.00 0.00 0.00 3.35
162 163 0.411452 AGGCTGGAGAGGAAGTCAGA 59.589 55.000 0.00 0.00 0.00 3.27
163 164 0.823460 GAGGCTGGAGAGGAAGTCAG 59.177 60.000 0.00 0.00 0.00 3.51
164 165 0.967887 CGAGGCTGGAGAGGAAGTCA 60.968 60.000 0.00 0.00 0.00 3.41
165 166 1.671901 CCGAGGCTGGAGAGGAAGTC 61.672 65.000 0.00 0.00 0.00 3.01
166 167 1.684049 CCGAGGCTGGAGAGGAAGT 60.684 63.158 0.00 0.00 0.00 3.01
167 168 3.087666 GCCGAGGCTGGAGAGGAAG 62.088 68.421 6.90 0.00 38.26 3.46
168 169 3.077556 GCCGAGGCTGGAGAGGAA 61.078 66.667 6.90 0.00 38.26 3.36
169 170 4.382541 TGCCGAGGCTGGAGAGGA 62.383 66.667 15.75 0.00 42.51 3.71
170 171 3.847602 CTGCCGAGGCTGGAGAGG 61.848 72.222 15.75 0.00 42.51 3.69
171 172 3.073735 ACTGCCGAGGCTGGAGAG 61.074 66.667 21.95 10.65 43.03 3.20
172 173 3.385384 CACTGCCGAGGCTGGAGA 61.385 66.667 21.95 0.00 43.03 3.71
178 179 4.735132 TACACGCACTGCCGAGGC 62.735 66.667 7.26 7.26 42.35 4.70
179 180 1.447838 AATACACGCACTGCCGAGG 60.448 57.895 0.00 0.00 0.00 4.63
180 181 1.014044 ACAATACACGCACTGCCGAG 61.014 55.000 0.00 0.00 0.00 4.63
181 182 1.005512 ACAATACACGCACTGCCGA 60.006 52.632 0.00 0.00 0.00 5.54
182 183 1.419922 GACAATACACGCACTGCCG 59.580 57.895 0.00 0.00 0.00 5.69
183 184 1.011968 TCGACAATACACGCACTGCC 61.012 55.000 0.00 0.00 0.00 4.85
184 185 0.787787 TTCGACAATACACGCACTGC 59.212 50.000 0.00 0.00 0.00 4.40
185 186 3.513462 TTTTCGACAATACACGCACTG 57.487 42.857 0.00 0.00 0.00 3.66
186 187 5.165676 TCTATTTTCGACAATACACGCACT 58.834 37.500 0.00 0.00 0.00 4.40
187 188 5.444586 TCTATTTTCGACAATACACGCAC 57.555 39.130 0.00 0.00 0.00 5.34
188 189 6.456315 CCAATCTATTTTCGACAATACACGCA 60.456 38.462 0.00 0.00 0.00 5.24
189 190 5.901884 CCAATCTATTTTCGACAATACACGC 59.098 40.000 0.00 0.00 0.00 5.34
190 191 7.000575 ACCAATCTATTTTCGACAATACACG 57.999 36.000 0.00 0.00 0.00 4.49
191 192 7.696453 CCAACCAATCTATTTTCGACAATACAC 59.304 37.037 0.00 0.00 0.00 2.90
192 193 7.608376 TCCAACCAATCTATTTTCGACAATACA 59.392 33.333 0.00 0.00 0.00 2.29
193 194 7.908601 GTCCAACCAATCTATTTTCGACAATAC 59.091 37.037 0.00 0.00 0.00 1.89
194 195 7.608376 TGTCCAACCAATCTATTTTCGACAATA 59.392 33.333 4.09 4.09 0.00 1.90
195 196 6.432783 TGTCCAACCAATCTATTTTCGACAAT 59.567 34.615 1.90 1.90 0.00 2.71
196 197 5.765677 TGTCCAACCAATCTATTTTCGACAA 59.234 36.000 0.00 0.00 0.00 3.18
197 198 5.309638 TGTCCAACCAATCTATTTTCGACA 58.690 37.500 0.00 0.00 0.00 4.35
198 199 5.873179 TGTCCAACCAATCTATTTTCGAC 57.127 39.130 0.00 0.00 0.00 4.20
199 200 5.943416 ACATGTCCAACCAATCTATTTTCGA 59.057 36.000 0.00 0.00 0.00 3.71
200 201 6.194796 ACATGTCCAACCAATCTATTTTCG 57.805 37.500 0.00 0.00 0.00 3.46
201 202 7.339466 ACCTACATGTCCAACCAATCTATTTTC 59.661 37.037 0.00 0.00 0.00 2.29
202 203 7.182060 ACCTACATGTCCAACCAATCTATTTT 58.818 34.615 0.00 0.00 0.00 1.82
203 204 6.731467 ACCTACATGTCCAACCAATCTATTT 58.269 36.000 0.00 0.00 0.00 1.40
204 205 6.158695 AGACCTACATGTCCAACCAATCTATT 59.841 38.462 0.00 0.00 35.83 1.73
205 206 5.667626 AGACCTACATGTCCAACCAATCTAT 59.332 40.000 0.00 0.00 35.83 1.98
206 207 5.030147 AGACCTACATGTCCAACCAATCTA 58.970 41.667 0.00 0.00 35.83 1.98
207 208 3.846588 AGACCTACATGTCCAACCAATCT 59.153 43.478 0.00 0.00 35.83 2.40
208 209 4.222124 AGACCTACATGTCCAACCAATC 57.778 45.455 0.00 0.00 35.83 2.67
209 210 4.042809 TGAAGACCTACATGTCCAACCAAT 59.957 41.667 0.00 0.00 35.83 3.16
210 211 3.392947 TGAAGACCTACATGTCCAACCAA 59.607 43.478 0.00 0.00 35.83 3.67
211 212 2.976185 TGAAGACCTACATGTCCAACCA 59.024 45.455 0.00 0.00 35.83 3.67
212 213 3.695830 TGAAGACCTACATGTCCAACC 57.304 47.619 0.00 0.00 35.83 3.77
213 214 7.254455 CGAATATTGAAGACCTACATGTCCAAC 60.254 40.741 0.00 0.00 35.83 3.77
214 215 6.761242 CGAATATTGAAGACCTACATGTCCAA 59.239 38.462 0.00 0.00 35.83 3.53
215 216 6.127168 ACGAATATTGAAGACCTACATGTCCA 60.127 38.462 0.00 0.00 35.83 4.02
216 217 6.281405 ACGAATATTGAAGACCTACATGTCC 58.719 40.000 0.00 0.00 35.83 4.02
217 218 7.621991 CAACGAATATTGAAGACCTACATGTC 58.378 38.462 0.00 0.00 35.43 3.06
218 219 6.037172 GCAACGAATATTGAAGACCTACATGT 59.963 38.462 2.69 2.69 0.00 3.21
219 220 6.258727 AGCAACGAATATTGAAGACCTACATG 59.741 38.462 0.00 0.00 0.00 3.21
220 221 6.349300 AGCAACGAATATTGAAGACCTACAT 58.651 36.000 0.00 0.00 0.00 2.29
221 222 5.730550 AGCAACGAATATTGAAGACCTACA 58.269 37.500 0.00 0.00 0.00 2.74
222 223 6.312918 TGAAGCAACGAATATTGAAGACCTAC 59.687 38.462 0.00 0.00 0.00 3.18
223 224 6.403049 TGAAGCAACGAATATTGAAGACCTA 58.597 36.000 0.00 0.00 0.00 3.08
224 225 5.245531 TGAAGCAACGAATATTGAAGACCT 58.754 37.500 0.00 0.00 0.00 3.85
225 226 5.545658 TGAAGCAACGAATATTGAAGACC 57.454 39.130 0.00 0.00 0.00 3.85
226 227 5.024555 GCTGAAGCAACGAATATTGAAGAC 58.975 41.667 0.00 0.00 41.59 3.01
227 228 4.094887 GGCTGAAGCAACGAATATTGAAGA 59.905 41.667 4.43 0.00 44.36 2.87
228 229 4.346129 GGCTGAAGCAACGAATATTGAAG 58.654 43.478 4.43 0.00 44.36 3.02
229 230 3.128589 GGGCTGAAGCAACGAATATTGAA 59.871 43.478 4.43 0.00 44.36 2.69
230 231 2.682856 GGGCTGAAGCAACGAATATTGA 59.317 45.455 4.43 0.00 44.36 2.57
231 232 2.684881 AGGGCTGAAGCAACGAATATTG 59.315 45.455 4.43 0.00 44.36 1.90
232 233 3.004752 AGGGCTGAAGCAACGAATATT 57.995 42.857 4.43 0.00 44.36 1.28
233 234 2.717639 AGGGCTGAAGCAACGAATAT 57.282 45.000 4.43 0.00 44.36 1.28
234 235 2.356135 GAAGGGCTGAAGCAACGAATA 58.644 47.619 4.43 0.00 44.36 1.75
235 236 1.168714 GAAGGGCTGAAGCAACGAAT 58.831 50.000 4.43 0.00 44.36 3.34
236 237 0.889186 GGAAGGGCTGAAGCAACGAA 60.889 55.000 4.43 0.00 44.36 3.85
237 238 1.302511 GGAAGGGCTGAAGCAACGA 60.303 57.895 4.43 0.00 44.36 3.85
238 239 2.680913 CGGAAGGGCTGAAGCAACG 61.681 63.158 4.43 0.00 44.36 4.10
239 240 3.267974 CGGAAGGGCTGAAGCAAC 58.732 61.111 4.43 0.00 44.36 4.17
251 252 1.425412 CACCGTTCAACTACCGGAAG 58.575 55.000 9.46 0.00 44.41 3.46
252 253 0.033781 CCACCGTTCAACTACCGGAA 59.966 55.000 9.46 0.00 44.41 4.30
253 254 1.114722 ACCACCGTTCAACTACCGGA 61.115 55.000 9.46 0.00 44.41 5.14
254 255 0.947180 CACCACCGTTCAACTACCGG 60.947 60.000 0.00 0.00 46.93 5.28
255 256 1.562575 GCACCACCGTTCAACTACCG 61.563 60.000 0.00 0.00 0.00 4.02
256 257 0.250166 AGCACCACCGTTCAACTACC 60.250 55.000 0.00 0.00 0.00 3.18
257 258 1.145803 GAGCACCACCGTTCAACTAC 58.854 55.000 0.00 0.00 0.00 2.73
258 259 0.753867 TGAGCACCACCGTTCAACTA 59.246 50.000 0.00 0.00 0.00 2.24
259 260 0.107410 TTGAGCACCACCGTTCAACT 60.107 50.000 0.00 0.00 32.05 3.16
260 261 0.951558 ATTGAGCACCACCGTTCAAC 59.048 50.000 0.00 0.00 38.66 3.18
261 262 2.552599 TATTGAGCACCACCGTTCAA 57.447 45.000 0.00 0.00 39.89 2.69
262 263 2.422597 CTTATTGAGCACCACCGTTCA 58.577 47.619 0.00 0.00 0.00 3.18
263 264 1.737793 CCTTATTGAGCACCACCGTTC 59.262 52.381 0.00 0.00 0.00 3.95
264 265 1.073284 ACCTTATTGAGCACCACCGTT 59.927 47.619 0.00 0.00 0.00 4.44
265 266 0.690762 ACCTTATTGAGCACCACCGT 59.309 50.000 0.00 0.00 0.00 4.83
266 267 1.066143 AGACCTTATTGAGCACCACCG 60.066 52.381 0.00 0.00 0.00 4.94
267 268 2.633488 GAGACCTTATTGAGCACCACC 58.367 52.381 0.00 0.00 0.00 4.61
268 269 2.237392 AGGAGACCTTATTGAGCACCAC 59.763 50.000 0.00 0.00 0.00 4.16
269 270 2.501723 GAGGAGACCTTATTGAGCACCA 59.498 50.000 0.00 0.00 31.76 4.17
270 271 2.769095 AGAGGAGACCTTATTGAGCACC 59.231 50.000 0.00 0.00 31.76 5.01
271 272 3.431486 CCAGAGGAGACCTTATTGAGCAC 60.431 52.174 0.00 0.00 31.76 4.40
272 273 2.768527 CCAGAGGAGACCTTATTGAGCA 59.231 50.000 0.00 0.00 31.76 4.26
273 274 2.484594 GCCAGAGGAGACCTTATTGAGC 60.485 54.545 0.00 0.00 31.76 4.26
274 275 3.037549 AGCCAGAGGAGACCTTATTGAG 58.962 50.000 0.00 0.00 31.76 3.02
275 276 3.121929 AGCCAGAGGAGACCTTATTGA 57.878 47.619 0.00 0.00 31.76 2.57
276 277 3.198635 TGAAGCCAGAGGAGACCTTATTG 59.801 47.826 0.00 0.00 31.76 1.90
277 278 3.454858 TGAAGCCAGAGGAGACCTTATT 58.545 45.455 0.00 0.00 31.76 1.40
278 279 3.121929 TGAAGCCAGAGGAGACCTTAT 57.878 47.619 0.00 0.00 31.76 1.73
279 280 2.567615 GTTGAAGCCAGAGGAGACCTTA 59.432 50.000 0.00 0.00 31.76 2.69
280 281 1.349357 GTTGAAGCCAGAGGAGACCTT 59.651 52.381 0.00 0.00 31.76 3.50
281 282 0.980423 GTTGAAGCCAGAGGAGACCT 59.020 55.000 0.00 0.00 36.03 3.85
282 283 0.390472 CGTTGAAGCCAGAGGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
283 284 0.390472 CCGTTGAAGCCAGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
284 285 0.832135 ACCGTTGAAGCCAGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
285 286 0.671781 CACCGTTGAAGCCAGAGGAG 60.672 60.000 0.00 0.00 0.00 3.69
286 287 1.371183 CACCGTTGAAGCCAGAGGA 59.629 57.895 0.00 0.00 0.00 3.71
287 288 1.672356 CCACCGTTGAAGCCAGAGG 60.672 63.158 0.00 0.00 0.00 3.69
288 289 1.672356 CCCACCGTTGAAGCCAGAG 60.672 63.158 0.00 0.00 0.00 3.35
289 290 1.122632 TACCCACCGTTGAAGCCAGA 61.123 55.000 0.00 0.00 0.00 3.86
290 291 0.953960 GTACCCACCGTTGAAGCCAG 60.954 60.000 0.00 0.00 0.00 4.85
291 292 1.071814 GTACCCACCGTTGAAGCCA 59.928 57.895 0.00 0.00 0.00 4.75
292 293 2.030958 CGTACCCACCGTTGAAGCC 61.031 63.158 0.00 0.00 0.00 4.35
293 294 1.287041 GACGTACCCACCGTTGAAGC 61.287 60.000 0.00 0.00 38.92 3.86
294 295 1.005294 CGACGTACCCACCGTTGAAG 61.005 60.000 0.00 0.00 41.23 3.02
295 296 1.007502 CGACGTACCCACCGTTGAA 60.008 57.895 0.00 0.00 41.23 2.69
296 297 1.733402 AACGACGTACCCACCGTTGA 61.733 55.000 9.31 0.00 42.61 3.18
297 298 0.039617 TAACGACGTACCCACCGTTG 60.040 55.000 17.46 0.00 43.75 4.10
298 299 0.240945 CTAACGACGTACCCACCGTT 59.759 55.000 13.76 13.76 45.50 4.44
308 309 3.129109 TCATCGCTAGATCTAACGACGT 58.871 45.455 25.91 12.03 36.63 4.34
309 310 3.429207 TCTCATCGCTAGATCTAACGACG 59.571 47.826 25.91 19.94 36.63 5.12
313 314 3.120130 CCGGTCTCATCGCTAGATCTAAC 60.120 52.174 3.57 0.00 34.23 2.34
316 317 1.529226 CCGGTCTCATCGCTAGATCT 58.471 55.000 0.00 0.00 34.23 2.75
342 343 6.779860 TCTACAGAGGAAAAGGCAATAAACT 58.220 36.000 0.00 0.00 0.00 2.66
345 346 5.648092 GCTTCTACAGAGGAAAAGGCAATAA 59.352 40.000 0.00 0.00 0.00 1.40
346 347 5.186198 GCTTCTACAGAGGAAAAGGCAATA 58.814 41.667 0.00 0.00 0.00 1.90
347 348 4.013050 GCTTCTACAGAGGAAAAGGCAAT 58.987 43.478 0.00 0.00 0.00 3.56
363 364 0.547712 ACCAGCTCCCCTTGCTTCTA 60.548 55.000 0.00 0.00 38.92 2.10
366 367 1.002857 ATAACCAGCTCCCCTTGCTT 58.997 50.000 0.00 0.00 38.92 3.91
370 371 1.972588 AGACATAACCAGCTCCCCTT 58.027 50.000 0.00 0.00 0.00 3.95
378 379 2.482142 GGCCTCTCGAAGACATAACCAG 60.482 54.545 0.00 0.00 0.00 4.00
405 406 0.947244 GGGACATTATTGCTGGAGCG 59.053 55.000 0.00 0.00 45.83 5.03
412 413 2.693074 ACCAAATCGGGGACATTATTGC 59.307 45.455 0.00 0.00 40.22 3.56
423 424 3.311596 GTCGAAGGAATAACCAAATCGGG 59.688 47.826 0.00 0.00 39.85 5.14
440 441 4.232221 CCTACACTTTCGCTTAAGTCGAA 58.768 43.478 22.27 22.27 43.19 3.71
448 449 2.902705 TCACACCTACACTTTCGCTT 57.097 45.000 0.00 0.00 0.00 4.68
458 459 5.185454 TGACATTGGATCAATCACACCTAC 58.815 41.667 0.00 0.00 31.05 3.18
469 470 5.678583 GGAGAAGAAGATGACATTGGATCA 58.321 41.667 0.00 0.00 0.00 2.92
472 473 3.118629 CCGGAGAAGAAGATGACATTGGA 60.119 47.826 0.00 0.00 0.00 3.53
531 532 2.228059 GATTCACCGATCTCTACCCGA 58.772 52.381 0.00 0.00 0.00 5.14
533 534 2.599677 AGGATTCACCGATCTCTACCC 58.400 52.381 0.00 0.00 44.74 3.69
577 578 1.347221 CGTAATCGCCGGAACAAGC 59.653 57.895 5.05 0.00 0.00 4.01
599 600 1.528129 GCCAGCTGATATTGCTACCC 58.472 55.000 17.39 0.00 38.92 3.69
612 613 0.745845 GAACATGTCGATGGCCAGCT 60.746 55.000 20.58 0.00 33.39 4.24
630 631 1.755621 CGTCCTCCCTCTCCATCATGA 60.756 57.143 0.00 0.00 0.00 3.07
686 687 2.427095 GCATTACAAGAACATCCACCCC 59.573 50.000 0.00 0.00 0.00 4.95
708 709 7.413657 CGATGTTTTGTATTAATCGAACCACCT 60.414 37.037 0.00 0.00 41.98 4.00
712 713 6.778108 ACCGATGTTTTGTATTAATCGAACC 58.222 36.000 5.03 0.00 41.98 3.62
769 770 7.418337 AGAATTAAACAAAGGTGGTCAAAGT 57.582 32.000 0.00 0.00 0.00 2.66
779 780 9.044150 TGCAAAATCTGAAGAATTAAACAAAGG 57.956 29.630 0.00 0.00 0.00 3.11
866 867 2.202623 CTCGGGAAGGAGAACGCG 60.203 66.667 3.53 3.53 42.22 6.01
902 903 1.893801 TGATCCACATGTTGCATGCAA 59.106 42.857 28.80 28.80 0.00 4.08
1007 1012 1.868713 TTAGATGAGGGCCGGTGTTA 58.131 50.000 1.90 0.00 0.00 2.41
1040 1045 1.134250 TGGTGTGTGCTTGCTTGTCTA 60.134 47.619 0.00 0.00 0.00 2.59
1075 1080 4.267536 TCTTCGCTGTAAGGTAGCTAAGA 58.732 43.478 9.10 9.10 45.14 2.10
1076 1081 4.602995 CTCTTCGCTGTAAGGTAGCTAAG 58.397 47.826 0.00 0.00 42.19 2.18
1077 1082 3.181489 GCTCTTCGCTGTAAGGTAGCTAA 60.181 47.826 0.00 0.00 39.00 3.09
1078 1083 2.358267 GCTCTTCGCTGTAAGGTAGCTA 59.642 50.000 0.00 0.00 39.00 3.32
1316 1322 1.516423 GGCCTTAGGAGACGTGGAC 59.484 63.158 0.69 0.00 0.00 4.02
1320 1326 3.459063 GCCGGCCTTAGGAGACGT 61.459 66.667 18.11 0.00 0.00 4.34
1512 1524 2.813042 GCTCACTGACTCTGCGGC 60.813 66.667 0.00 0.00 0.00 6.53
1514 1526 1.513800 CGAGCTCACTGACTCTGCG 60.514 63.158 15.40 0.00 0.00 5.18
1517 1529 2.347322 GGCCGAGCTCACTGACTCT 61.347 63.158 15.40 0.00 0.00 3.24
1518 1530 2.183046 GGCCGAGCTCACTGACTC 59.817 66.667 15.40 0.00 0.00 3.36
1619 1634 3.376859 GTCAAACACACACCAACTCATGA 59.623 43.478 0.00 0.00 0.00 3.07
1750 1765 2.510382 TCCACTTGACAAGTTGGGGTAA 59.490 45.455 24.44 11.49 40.46 2.85
1830 1857 3.742369 TGACTCCAACGGATAAAACGAAC 59.258 43.478 0.00 0.00 34.93 3.95
1844 1871 2.027073 GCATCGTGCGTGACTCCAA 61.027 57.895 0.00 0.00 31.71 3.53
1857 1884 5.629079 TGATACTATACTGGTCTGCATCG 57.371 43.478 0.00 0.00 0.00 3.84
1884 1912 4.848000 TGCCTGTGCACCATCAAT 57.152 50.000 15.69 0.00 44.23 2.57
1982 2010 2.801111 CCATCATCGTCTGATCAAGCAG 59.199 50.000 0.00 0.00 42.91 4.24
2148 2176 3.894547 AACCACGCCCTAAGCCGTG 62.895 63.158 6.22 6.22 42.13 4.94
2150 2178 2.359478 AAACCACGCCCTAAGCCG 60.359 61.111 0.00 0.00 38.78 5.52
2191 2219 2.109126 CAAAGCCCCTACAGAGCGC 61.109 63.158 0.00 0.00 0.00 5.92
2209 2237 1.362406 GCGAGCAGTCTTACAAGGCC 61.362 60.000 0.00 0.00 0.00 5.19
2245 2273 5.260027 AGCATGAAAACGTCGTAAGTTAC 57.740 39.130 0.00 2.72 39.48 2.50
2270 2298 0.331278 AAAAGCCATCCCGACCATCA 59.669 50.000 0.00 0.00 0.00 3.07
2294 2322 9.075519 CGTACCGAAACATAAGTTAGATTACAA 57.924 33.333 0.00 0.00 36.84 2.41
2320 2348 0.602562 TAAAGCCCACAACATGCAGC 59.397 50.000 0.00 0.00 0.00 5.25
2385 2413 2.812011 ACATTGCTGACCGAAACCTTAC 59.188 45.455 0.00 0.00 0.00 2.34
2388 2416 1.880027 GAACATTGCTGACCGAAACCT 59.120 47.619 0.00 0.00 0.00 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.