Multiple sequence alignment - TraesCS2A01G005500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G005500 | chr2A | 100.000 | 2714 | 0 | 0 | 1 | 2714 | 2709888 | 2707175 | 0.000000e+00 | 5012.0 |
1 | TraesCS2A01G005500 | chr2D | 90.464 | 1877 | 117 | 39 | 233 | 2079 | 3003970 | 3005814 | 0.000000e+00 | 2418.0 |
2 | TraesCS2A01G005500 | chr2B | 87.707 | 2115 | 155 | 58 | 233 | 2320 | 7684845 | 7682809 | 0.000000e+00 | 2368.0 |
3 | TraesCS2A01G005500 | chr2B | 83.496 | 1024 | 72 | 42 | 1725 | 2714 | 7682206 | 7681246 | 0.000000e+00 | 865.0 |
4 | TraesCS2A01G005500 | chr2B | 94.643 | 56 | 2 | 1 | 178 | 232 | 7684946 | 7684891 | 4.810000e-13 | 86.1 |
5 | TraesCS2A01G005500 | chr1B | 81.744 | 1227 | 137 | 48 | 563 | 1774 | 432379774 | 432378620 | 0.000000e+00 | 944.0 |
6 | TraesCS2A01G005500 | chr1D | 84.026 | 939 | 93 | 23 | 840 | 1772 | 319618133 | 319617246 | 0.000000e+00 | 850.0 |
7 | TraesCS2A01G005500 | chr1A | 79.648 | 1194 | 122 | 61 | 586 | 1774 | 403631918 | 403632995 | 0.000000e+00 | 747.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G005500 | chr2A | 2707175 | 2709888 | 2713 | True | 5012.000000 | 5012 | 100.000000 | 1 | 2714 | 1 | chr2A.!!$R1 | 2713 |
1 | TraesCS2A01G005500 | chr2D | 3003970 | 3005814 | 1844 | False | 2418.000000 | 2418 | 90.464000 | 233 | 2079 | 1 | chr2D.!!$F1 | 1846 |
2 | TraesCS2A01G005500 | chr2B | 7681246 | 7684946 | 3700 | True | 1106.366667 | 2368 | 88.615333 | 178 | 2714 | 3 | chr2B.!!$R1 | 2536 |
3 | TraesCS2A01G005500 | chr1B | 432378620 | 432379774 | 1154 | True | 944.000000 | 944 | 81.744000 | 563 | 1774 | 1 | chr1B.!!$R1 | 1211 |
4 | TraesCS2A01G005500 | chr1D | 319617246 | 319618133 | 887 | True | 850.000000 | 850 | 84.026000 | 840 | 1772 | 1 | chr1D.!!$R1 | 932 |
5 | TraesCS2A01G005500 | chr1A | 403631918 | 403632995 | 1077 | False | 747.000000 | 747 | 79.648000 | 586 | 1774 | 1 | chr1A.!!$F1 | 1188 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
290 | 337 | 0.107703 | CGGGCCAGCAAGAATGTCTA | 60.108 | 55.0 | 4.39 | 0.0 | 0.0 | 2.59 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1891 | 3204 | 0.037303 | TGAAGCTTTGAGGCTCCAGG | 59.963 | 55.0 | 12.86 | 2.23 | 42.24 | 4.45 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 0.788995 | CCGATTGCAGATCTGATCGC | 59.211 | 55.000 | 28.50 | 20.07 | 0.00 | 4.58 |
20 | 21 | 1.604947 | CCGATTGCAGATCTGATCGCT | 60.605 | 52.381 | 28.50 | 10.89 | 32.64 | 4.93 |
21 | 22 | 2.133553 | CGATTGCAGATCTGATCGCTT | 58.866 | 47.619 | 27.04 | 16.40 | 32.64 | 4.68 |
22 | 23 | 2.155347 | CGATTGCAGATCTGATCGCTTC | 59.845 | 50.000 | 27.04 | 20.27 | 32.64 | 3.86 |
23 | 24 | 1.564207 | TTGCAGATCTGATCGCTTCG | 58.436 | 50.000 | 27.04 | 10.75 | 32.64 | 3.79 |
24 | 25 | 0.249197 | TGCAGATCTGATCGCTTCGG | 60.249 | 55.000 | 27.04 | 0.00 | 32.64 | 4.30 |
25 | 26 | 0.943359 | GCAGATCTGATCGCTTCGGG | 60.943 | 60.000 | 27.04 | 0.00 | 0.00 | 5.14 |
26 | 27 | 0.387202 | CAGATCTGATCGCTTCGGGT | 59.613 | 55.000 | 18.34 | 0.00 | 0.00 | 5.28 |
27 | 28 | 1.115467 | AGATCTGATCGCTTCGGGTT | 58.885 | 50.000 | 11.73 | 0.00 | 0.00 | 4.11 |
28 | 29 | 1.482593 | AGATCTGATCGCTTCGGGTTT | 59.517 | 47.619 | 11.73 | 0.00 | 0.00 | 3.27 |
29 | 30 | 2.093447 | AGATCTGATCGCTTCGGGTTTT | 60.093 | 45.455 | 11.73 | 0.00 | 0.00 | 2.43 |
30 | 31 | 1.722011 | TCTGATCGCTTCGGGTTTTC | 58.278 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
31 | 32 | 1.001520 | TCTGATCGCTTCGGGTTTTCA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
32 | 33 | 2.009774 | CTGATCGCTTCGGGTTTTCAT | 58.990 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
33 | 34 | 2.420022 | CTGATCGCTTCGGGTTTTCATT | 59.580 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
34 | 35 | 2.817258 | TGATCGCTTCGGGTTTTCATTT | 59.183 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
35 | 36 | 3.254657 | TGATCGCTTCGGGTTTTCATTTT | 59.745 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
36 | 37 | 3.719173 | TCGCTTCGGGTTTTCATTTTT | 57.281 | 38.095 | 0.00 | 0.00 | 0.00 | 1.94 |
37 | 38 | 3.634283 | TCGCTTCGGGTTTTCATTTTTC | 58.366 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
38 | 39 | 2.729360 | CGCTTCGGGTTTTCATTTTTCC | 59.271 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
39 | 40 | 3.552068 | CGCTTCGGGTTTTCATTTTTCCT | 60.552 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
40 | 41 | 3.987868 | GCTTCGGGTTTTCATTTTTCCTC | 59.012 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
41 | 42 | 4.556233 | CTTCGGGTTTTCATTTTTCCTCC | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
42 | 43 | 3.567397 | TCGGGTTTTCATTTTTCCTCCA | 58.433 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
43 | 44 | 4.156477 | TCGGGTTTTCATTTTTCCTCCAT | 58.844 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
44 | 45 | 5.326069 | TCGGGTTTTCATTTTTCCTCCATA | 58.674 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
45 | 46 | 5.955355 | TCGGGTTTTCATTTTTCCTCCATAT | 59.045 | 36.000 | 0.00 | 0.00 | 0.00 | 1.78 |
46 | 47 | 6.042143 | CGGGTTTTCATTTTTCCTCCATATG | 58.958 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
47 | 48 | 5.817296 | GGGTTTTCATTTTTCCTCCATATGC | 59.183 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
48 | 49 | 6.405538 | GGTTTTCATTTTTCCTCCATATGCA | 58.594 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
49 | 50 | 7.049754 | GGTTTTCATTTTTCCTCCATATGCAT | 58.950 | 34.615 | 3.79 | 3.79 | 0.00 | 3.96 |
50 | 51 | 8.203485 | GGTTTTCATTTTTCCTCCATATGCATA | 58.797 | 33.333 | 9.27 | 9.27 | 0.00 | 3.14 |
51 | 52 | 9.252962 | GTTTTCATTTTTCCTCCATATGCATAG | 57.747 | 33.333 | 12.79 | 0.00 | 0.00 | 2.23 |
52 | 53 | 8.765488 | TTTCATTTTTCCTCCATATGCATAGA | 57.235 | 30.769 | 12.79 | 4.13 | 0.00 | 1.98 |
53 | 54 | 8.945195 | TTCATTTTTCCTCCATATGCATAGAT | 57.055 | 30.769 | 12.79 | 0.00 | 0.00 | 1.98 |
54 | 55 | 8.945195 | TCATTTTTCCTCCATATGCATAGATT | 57.055 | 30.769 | 12.79 | 0.00 | 0.00 | 2.40 |
55 | 56 | 9.370930 | TCATTTTTCCTCCATATGCATAGATTT | 57.629 | 29.630 | 12.79 | 0.00 | 0.00 | 2.17 |
56 | 57 | 9.419297 | CATTTTTCCTCCATATGCATAGATTTG | 57.581 | 33.333 | 12.79 | 5.37 | 0.00 | 2.32 |
57 | 58 | 7.528996 | TTTTCCTCCATATGCATAGATTTGG | 57.471 | 36.000 | 15.26 | 15.26 | 0.00 | 3.28 |
58 | 59 | 5.848286 | TCCTCCATATGCATAGATTTGGT | 57.152 | 39.130 | 19.03 | 0.00 | 0.00 | 3.67 |
59 | 60 | 6.204852 | TCCTCCATATGCATAGATTTGGTT | 57.795 | 37.500 | 19.03 | 0.00 | 0.00 | 3.67 |
60 | 61 | 6.613699 | TCCTCCATATGCATAGATTTGGTTT | 58.386 | 36.000 | 19.03 | 0.00 | 0.00 | 3.27 |
61 | 62 | 7.068702 | TCCTCCATATGCATAGATTTGGTTTT | 58.931 | 34.615 | 19.03 | 0.00 | 0.00 | 2.43 |
62 | 63 | 8.224025 | TCCTCCATATGCATAGATTTGGTTTTA | 58.776 | 33.333 | 19.03 | 4.28 | 0.00 | 1.52 |
63 | 64 | 9.028284 | CCTCCATATGCATAGATTTGGTTTTAT | 57.972 | 33.333 | 19.03 | 0.00 | 0.00 | 1.40 |
71 | 72 | 9.851686 | TGCATAGATTTGGTTTTATATGACTCT | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
84 | 85 | 9.472361 | TTTTATATGACTCTTATACTTGTCGGC | 57.528 | 33.333 | 0.00 | 0.00 | 32.64 | 5.54 |
85 | 86 | 6.650427 | ATATGACTCTTATACTTGTCGGCA | 57.350 | 37.500 | 0.00 | 0.00 | 32.64 | 5.69 |
86 | 87 | 4.794278 | TGACTCTTATACTTGTCGGCAA | 57.206 | 40.909 | 0.91 | 0.91 | 32.64 | 4.52 |
87 | 88 | 5.339008 | TGACTCTTATACTTGTCGGCAAT | 57.661 | 39.130 | 1.35 | 0.00 | 33.65 | 3.56 |
88 | 89 | 5.730550 | TGACTCTTATACTTGTCGGCAATT | 58.269 | 37.500 | 1.35 | 0.00 | 33.65 | 2.32 |
89 | 90 | 6.869695 | TGACTCTTATACTTGTCGGCAATTA | 58.130 | 36.000 | 1.35 | 1.78 | 33.65 | 1.40 |
90 | 91 | 6.755141 | TGACTCTTATACTTGTCGGCAATTAC | 59.245 | 38.462 | 1.35 | 0.00 | 33.65 | 1.89 |
91 | 92 | 6.636705 | ACTCTTATACTTGTCGGCAATTACA | 58.363 | 36.000 | 1.35 | 0.00 | 33.65 | 2.41 |
92 | 93 | 7.272978 | ACTCTTATACTTGTCGGCAATTACAT | 58.727 | 34.615 | 1.35 | 0.00 | 33.65 | 2.29 |
93 | 94 | 8.418662 | ACTCTTATACTTGTCGGCAATTACATA | 58.581 | 33.333 | 1.35 | 0.00 | 33.65 | 2.29 |
94 | 95 | 9.424319 | CTCTTATACTTGTCGGCAATTACATAT | 57.576 | 33.333 | 1.35 | 0.00 | 33.65 | 1.78 |
95 | 96 | 9.419297 | TCTTATACTTGTCGGCAATTACATATC | 57.581 | 33.333 | 1.35 | 0.00 | 33.65 | 1.63 |
96 | 97 | 9.424319 | CTTATACTTGTCGGCAATTACATATCT | 57.576 | 33.333 | 1.35 | 0.00 | 33.65 | 1.98 |
97 | 98 | 9.772973 | TTATACTTGTCGGCAATTACATATCTT | 57.227 | 29.630 | 1.35 | 0.00 | 33.65 | 2.40 |
98 | 99 | 6.604735 | ACTTGTCGGCAATTACATATCTTC | 57.395 | 37.500 | 1.35 | 0.00 | 33.65 | 2.87 |
99 | 100 | 6.349300 | ACTTGTCGGCAATTACATATCTTCT | 58.651 | 36.000 | 1.35 | 0.00 | 33.65 | 2.85 |
100 | 101 | 6.823689 | ACTTGTCGGCAATTACATATCTTCTT | 59.176 | 34.615 | 1.35 | 0.00 | 33.65 | 2.52 |
101 | 102 | 7.985184 | ACTTGTCGGCAATTACATATCTTCTTA | 59.015 | 33.333 | 1.35 | 0.00 | 33.65 | 2.10 |
102 | 103 | 8.725405 | TTGTCGGCAATTACATATCTTCTTAA | 57.275 | 30.769 | 0.00 | 0.00 | 0.00 | 1.85 |
103 | 104 | 8.902540 | TGTCGGCAATTACATATCTTCTTAAT | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
104 | 105 | 8.773645 | TGTCGGCAATTACATATCTTCTTAATG | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
105 | 106 | 7.746475 | GTCGGCAATTACATATCTTCTTAATGC | 59.254 | 37.037 | 0.00 | 0.00 | 0.00 | 3.56 |
106 | 107 | 7.661437 | TCGGCAATTACATATCTTCTTAATGCT | 59.339 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
107 | 108 | 7.959651 | CGGCAATTACATATCTTCTTAATGCTC | 59.040 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
108 | 109 | 9.007901 | GGCAATTACATATCTTCTTAATGCTCT | 57.992 | 33.333 | 0.00 | 0.00 | 0.00 | 4.09 |
118 | 119 | 8.894768 | ATCTTCTTAATGCTCTATTTTACGCT | 57.105 | 30.769 | 0.00 | 0.00 | 0.00 | 5.07 |
119 | 120 | 9.982651 | ATCTTCTTAATGCTCTATTTTACGCTA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 4.26 |
120 | 121 | 9.245962 | TCTTCTTAATGCTCTATTTTACGCTAC | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
121 | 122 | 9.250624 | CTTCTTAATGCTCTATTTTACGCTACT | 57.749 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
122 | 123 | 9.595823 | TTCTTAATGCTCTATTTTACGCTACTT | 57.404 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
123 | 124 | 9.245962 | TCTTAATGCTCTATTTTACGCTACTTC | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
124 | 125 | 6.846325 | AATGCTCTATTTTACGCTACTTCC | 57.154 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
125 | 126 | 5.593679 | TGCTCTATTTTACGCTACTTCCT | 57.406 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
126 | 127 | 5.589192 | TGCTCTATTTTACGCTACTTCCTC | 58.411 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
127 | 128 | 5.360144 | TGCTCTATTTTACGCTACTTCCTCT | 59.640 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
128 | 129 | 6.544931 | TGCTCTATTTTACGCTACTTCCTCTA | 59.455 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
129 | 130 | 7.079475 | GCTCTATTTTACGCTACTTCCTCTAG | 58.921 | 42.308 | 0.00 | 0.00 | 0.00 | 2.43 |
130 | 131 | 7.255208 | GCTCTATTTTACGCTACTTCCTCTAGT | 60.255 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
131 | 132 | 8.517062 | TCTATTTTACGCTACTTCCTCTAGTT | 57.483 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
132 | 133 | 8.619546 | TCTATTTTACGCTACTTCCTCTAGTTC | 58.380 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
133 | 134 | 6.579666 | TTTTACGCTACTTCCTCTAGTTCA | 57.420 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
134 | 135 | 6.770746 | TTTACGCTACTTCCTCTAGTTCAT | 57.229 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
135 | 136 | 7.870509 | TTTACGCTACTTCCTCTAGTTCATA | 57.129 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
136 | 137 | 8.461249 | TTTACGCTACTTCCTCTAGTTCATAT | 57.539 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
137 | 138 | 6.563222 | ACGCTACTTCCTCTAGTTCATATC | 57.437 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
138 | 139 | 6.062749 | ACGCTACTTCCTCTAGTTCATATCA | 58.937 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
139 | 140 | 6.205853 | ACGCTACTTCCTCTAGTTCATATCAG | 59.794 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
140 | 141 | 6.205853 | CGCTACTTCCTCTAGTTCATATCAGT | 59.794 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
141 | 142 | 7.367285 | GCTACTTCCTCTAGTTCATATCAGTG | 58.633 | 42.308 | 0.00 | 0.00 | 0.00 | 3.66 |
142 | 143 | 7.229707 | GCTACTTCCTCTAGTTCATATCAGTGA | 59.770 | 40.741 | 0.00 | 0.00 | 0.00 | 3.41 |
143 | 144 | 7.341445 | ACTTCCTCTAGTTCATATCAGTGAC | 57.659 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
144 | 145 | 6.892456 | ACTTCCTCTAGTTCATATCAGTGACA | 59.108 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
145 | 146 | 7.397476 | ACTTCCTCTAGTTCATATCAGTGACAA | 59.603 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
146 | 147 | 7.904558 | TCCTCTAGTTCATATCAGTGACAAT | 57.095 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
147 | 148 | 8.311395 | TCCTCTAGTTCATATCAGTGACAATT | 57.689 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
148 | 149 | 9.421399 | TCCTCTAGTTCATATCAGTGACAATTA | 57.579 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
161 | 162 | 9.730705 | ATCAGTGACAATTAATATGGATCGAAT | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 3.34 |
162 | 163 | 8.992073 | TCAGTGACAATTAATATGGATCGAATG | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
163 | 164 | 8.992073 | CAGTGACAATTAATATGGATCGAATGA | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
164 | 165 | 9.559732 | AGTGACAATTAATATGGATCGAATGAA | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
165 | 166 | 9.817365 | GTGACAATTAATATGGATCGAATGAAG | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
166 | 167 | 9.559732 | TGACAATTAATATGGATCGAATGAAGT | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
197 | 198 | 7.775397 | ATTCACCTTTTGTCAAAAACATCTG | 57.225 | 32.000 | 11.73 | 0.00 | 37.82 | 2.90 |
198 | 199 | 6.522625 | TCACCTTTTGTCAAAAACATCTGA | 57.477 | 33.333 | 11.73 | 5.73 | 37.82 | 3.27 |
247 | 294 | 3.059868 | CGGCAATACGCGTTCAAGAATAT | 60.060 | 43.478 | 20.78 | 0.00 | 43.84 | 1.28 |
252 | 299 | 6.482835 | CAATACGCGTTCAAGAATATGGAAA | 58.517 | 36.000 | 20.78 | 0.00 | 0.00 | 3.13 |
290 | 337 | 0.107703 | CGGGCCAGCAAGAATGTCTA | 60.108 | 55.000 | 4.39 | 0.00 | 0.00 | 2.59 |
314 | 361 | 4.638421 | TGGTTCCTTAGCCATGAATTAACG | 59.362 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
344 | 391 | 2.576083 | CGTGCTTTGCGCTTTTTCA | 58.424 | 47.368 | 9.73 | 0.00 | 40.11 | 2.69 |
345 | 392 | 0.499761 | CGTGCTTTGCGCTTTTTCAG | 59.500 | 50.000 | 9.73 | 0.00 | 40.11 | 3.02 |
376 | 424 | 4.760047 | GCGCGGCTTCTCTTCCCA | 62.760 | 66.667 | 8.83 | 0.00 | 0.00 | 4.37 |
421 | 469 | 6.713762 | ATTTTCAGTTTCTCACATTCACCA | 57.286 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
422 | 470 | 5.756195 | TTTCAGTTTCTCACATTCACCAG | 57.244 | 39.130 | 0.00 | 0.00 | 0.00 | 4.00 |
423 | 471 | 4.422073 | TCAGTTTCTCACATTCACCAGT | 57.578 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
424 | 472 | 4.780815 | TCAGTTTCTCACATTCACCAGTT | 58.219 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
425 | 473 | 4.816385 | TCAGTTTCTCACATTCACCAGTTC | 59.184 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
428 | 476 | 2.054021 | TCTCACATTCACCAGTTCCCA | 58.946 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
429 | 477 | 2.154462 | CTCACATTCACCAGTTCCCAC | 58.846 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
430 | 478 | 0.874390 | CACATTCACCAGTTCCCACG | 59.126 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
487 | 536 | 5.689514 | CAGAAATCAGTATCGATGGTGAGTC | 59.310 | 44.000 | 8.54 | 11.38 | 0.00 | 3.36 |
495 | 544 | 5.639506 | AGTATCGATGGTGAGTCAGTTTTTG | 59.360 | 40.000 | 8.54 | 0.00 | 0.00 | 2.44 |
511 | 560 | 6.255453 | TCAGTTTTTGCTACATTGTTTTGCTC | 59.745 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
517 | 566 | 4.097741 | TGCTACATTGTTTTGCTCAAGTGT | 59.902 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
583 | 634 | 4.277423 | TGTTTTGCTTAACTTAGTGGGAGC | 59.723 | 41.667 | 7.60 | 7.60 | 0.00 | 4.70 |
685 | 750 | 1.064463 | TCTAAAGCAGGCCCCAATCAG | 60.064 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
714 | 779 | 1.301087 | CCACACCACGTCGCCTTTA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 1.85 |
715 | 780 | 1.562575 | CCACACCACGTCGCCTTTAC | 61.563 | 60.000 | 0.00 | 0.00 | 0.00 | 2.01 |
723 | 788 | 1.449070 | GTCGCCTTTACCCCCGAAG | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 3.79 |
751 | 816 | 1.831106 | GGTGGAAATGGGAATGGGAAC | 59.169 | 52.381 | 0.00 | 0.00 | 0.00 | 3.62 |
824 | 900 | 1.212935 | GCTGCCTCTTTATCCCTTCCA | 59.787 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
833 | 909 | 7.507277 | GCCTCTTTATCCCTTCCATCTTTATTT | 59.493 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
834 | 910 | 9.426534 | CCTCTTTATCCCTTCCATCTTTATTTT | 57.573 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
836 | 912 | 8.695456 | TCTTTATCCCTTCCATCTTTATTTTGC | 58.305 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
837 | 913 | 8.608185 | TTTATCCCTTCCATCTTTATTTTGCT | 57.392 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
838 | 914 | 8.608185 | TTATCCCTTCCATCTTTATTTTGCTT | 57.392 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
871 | 956 | 3.840124 | ATTAGCCTCCTTTTACCTCCG | 57.160 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
889 | 974 | 0.794473 | CGTTACTTCGTTCCCTTGGC | 59.206 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
923 | 1010 | 1.700739 | TCCCGTTTGGACACCATACTT | 59.299 | 47.619 | 9.00 | 0.00 | 38.61 | 2.24 |
949 | 1036 | 2.622977 | GGCTTCTTCTCCTCTCCTCTCA | 60.623 | 54.545 | 0.00 | 0.00 | 0.00 | 3.27 |
1128 | 1243 | 1.819632 | GCCGCCGTCCAAGATCATT | 60.820 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
1138 | 1253 | 1.660167 | CAAGATCATTCTGCAGCCGA | 58.340 | 50.000 | 9.47 | 5.38 | 30.72 | 5.54 |
1236 | 1351 | 3.078097 | CCTCGTCATCCTCATCGTCTAT | 58.922 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1368 | 1483 | 0.856982 | ACATCTCCAACCCCAACCAA | 59.143 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1396 | 1511 | 2.678580 | TCGTCATCCAGTCCGGCA | 60.679 | 61.111 | 0.00 | 0.00 | 33.14 | 5.69 |
1742 | 1878 | 3.311048 | GGTTTCTGGATCGATGCTCTTTC | 59.689 | 47.826 | 18.23 | 6.05 | 0.00 | 2.62 |
1743 | 1879 | 4.187694 | GTTTCTGGATCGATGCTCTTTCT | 58.812 | 43.478 | 18.23 | 0.00 | 0.00 | 2.52 |
1744 | 1880 | 4.478206 | TTCTGGATCGATGCTCTTTCTT | 57.522 | 40.909 | 18.23 | 0.00 | 0.00 | 2.52 |
1788 | 1930 | 1.177401 | GAGGAATTGGGTCAAGGCAC | 58.823 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1789 | 1931 | 0.482446 | AGGAATTGGGTCAAGGCACA | 59.518 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
1790 | 1932 | 1.077663 | AGGAATTGGGTCAAGGCACAT | 59.922 | 47.619 | 0.00 | 0.00 | 0.00 | 3.21 |
1791 | 1933 | 2.311542 | AGGAATTGGGTCAAGGCACATA | 59.688 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
1811 | 3117 | 5.817296 | ACATATAGCAAAGCAAACAGATCGA | 59.183 | 36.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1825 | 3131 | 7.701078 | GCAAACAGATCGACTAGTATGACTTAA | 59.299 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
1826 | 3132 | 9.737427 | CAAACAGATCGACTAGTATGACTTAAT | 57.263 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1842 | 3155 | 7.429636 | TGACTTAATTACTAGTGTGGTTTGC | 57.570 | 36.000 | 5.39 | 0.00 | 0.00 | 3.68 |
1852 | 3165 | 2.832661 | TGGTTTGCGCTTGTGGCT | 60.833 | 55.556 | 9.73 | 0.00 | 39.13 | 4.75 |
1876 | 3189 | 6.721571 | TTCACATTCTTGTTTACTCGATCC | 57.278 | 37.500 | 0.00 | 0.00 | 32.34 | 3.36 |
1882 | 3195 | 3.441222 | TCTTGTTTACTCGATCCGTAGCA | 59.559 | 43.478 | 0.00 | 0.00 | 0.00 | 3.49 |
1885 | 3198 | 0.666913 | TTACTCGATCCGTAGCAGCC | 59.333 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1887 | 3200 | 1.038130 | ACTCGATCCGTAGCAGCCTT | 61.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1888 | 3201 | 0.596083 | CTCGATCCGTAGCAGCCTTG | 60.596 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1897 | 3210 | 2.438075 | GCAGCCTTGCTCCTGGAG | 60.438 | 66.667 | 19.55 | 19.55 | 46.95 | 3.86 |
1910 | 3223 | 0.037303 | CCTGGAGCCTCAAAGCTTCA | 59.963 | 55.000 | 0.00 | 0.00 | 46.38 | 3.02 |
1932 | 3245 | 2.040544 | AACATGTACAGCGGCAGGC | 61.041 | 57.895 | 0.00 | 0.00 | 44.05 | 4.85 |
2003 | 3316 | 9.243105 | TCGTGAATCTCATATATGGTGAATAGA | 57.757 | 33.333 | 12.78 | 7.34 | 0.00 | 1.98 |
2044 | 3357 | 9.710900 | CTTGTTGCAGACATATAATAGATGGTA | 57.289 | 33.333 | 0.00 | 0.00 | 38.26 | 3.25 |
2069 | 3382 | 3.432749 | GGTGCTGATTCTGATAGCCTTGA | 60.433 | 47.826 | 0.00 | 0.00 | 36.64 | 3.02 |
2085 | 3398 | 1.751351 | CTTGACGACTCTCCATGGCTA | 59.249 | 52.381 | 6.96 | 0.00 | 0.00 | 3.93 |
2088 | 3401 | 2.235016 | GACGACTCTCCATGGCTATCT | 58.765 | 52.381 | 6.96 | 0.00 | 0.00 | 1.98 |
2134 | 3447 | 2.596904 | TTATGAAGGCTGGTACGAGC | 57.403 | 50.000 | 20.51 | 20.51 | 38.34 | 5.03 |
2143 | 3456 | 2.201436 | CTGGTACGAGCGCTCACACT | 62.201 | 60.000 | 34.69 | 17.03 | 0.00 | 3.55 |
2144 | 3457 | 1.514443 | GGTACGAGCGCTCACACTC | 60.514 | 63.158 | 34.69 | 20.02 | 0.00 | 3.51 |
2148 | 3461 | 2.563942 | GAGCGCTCACACTCGTCT | 59.436 | 61.111 | 31.91 | 0.00 | 0.00 | 4.18 |
2149 | 3462 | 1.794864 | GAGCGCTCACACTCGTCTA | 59.205 | 57.895 | 31.91 | 0.00 | 0.00 | 2.59 |
2150 | 3463 | 0.168348 | GAGCGCTCACACTCGTCTAA | 59.832 | 55.000 | 31.91 | 0.00 | 0.00 | 2.10 |
2151 | 3464 | 0.596577 | AGCGCTCACACTCGTCTAAA | 59.403 | 50.000 | 2.64 | 0.00 | 0.00 | 1.85 |
2152 | 3465 | 1.202582 | AGCGCTCACACTCGTCTAAAT | 59.797 | 47.619 | 2.64 | 0.00 | 0.00 | 1.40 |
2153 | 3466 | 1.993370 | GCGCTCACACTCGTCTAAATT | 59.007 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
2154 | 3467 | 3.119602 | AGCGCTCACACTCGTCTAAATTA | 60.120 | 43.478 | 2.64 | 0.00 | 0.00 | 1.40 |
2155 | 3468 | 3.240861 | GCGCTCACACTCGTCTAAATTAG | 59.759 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
2156 | 3469 | 4.659088 | CGCTCACACTCGTCTAAATTAGA | 58.341 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
2166 | 3479 | 4.780546 | GTCTAAATTAGACGCTGGCTTC | 57.219 | 45.455 | 16.26 | 0.00 | 44.90 | 3.86 |
2167 | 3480 | 4.434520 | GTCTAAATTAGACGCTGGCTTCT | 58.565 | 43.478 | 16.26 | 6.79 | 44.90 | 2.85 |
2177 | 3490 | 1.447945 | GCTGGCTTCTCCTCAGTTTC | 58.552 | 55.000 | 0.00 | 0.00 | 35.26 | 2.78 |
2217 | 3533 | 6.038603 | CAGTTGATTTGGTTCGATATCCACAT | 59.961 | 38.462 | 0.00 | 4.20 | 33.12 | 3.21 |
2229 | 3545 | 7.595311 | TCGATATCCACATTTCATATTTCCG | 57.405 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2230 | 3546 | 7.158697 | TCGATATCCACATTTCATATTTCCGT | 58.841 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
2231 | 3547 | 8.308207 | TCGATATCCACATTTCATATTTCCGTA | 58.692 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
2232 | 3548 | 9.098355 | CGATATCCACATTTCATATTTCCGTAT | 57.902 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2236 | 3552 | 8.560355 | TCCACATTTCATATTTCCGTATATGG | 57.440 | 34.615 | 4.41 | 4.41 | 38.47 | 2.74 |
2237 | 3553 | 7.120579 | TCCACATTTCATATTTCCGTATATGGC | 59.879 | 37.037 | 6.06 | 0.00 | 38.47 | 4.40 |
2239 | 3555 | 8.514594 | CACATTTCATATTTCCGTATATGGCTT | 58.485 | 33.333 | 6.06 | 0.00 | 38.47 | 4.35 |
2267 | 3606 | 2.879103 | TCCCTCAAGTGGTCCATTTC | 57.121 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2300 | 3639 | 7.775053 | AAGAATTAAACATAGGGACTTGCAA | 57.225 | 32.000 | 0.00 | 0.00 | 41.75 | 4.08 |
2302 | 3641 | 8.366359 | AGAATTAAACATAGGGACTTGCAATT | 57.634 | 30.769 | 0.00 | 0.00 | 41.75 | 2.32 |
2328 | 3667 | 7.680442 | TTTGCATTTATTAGTCACTAGTGCA | 57.320 | 32.000 | 18.45 | 5.10 | 38.18 | 4.57 |
2329 | 3668 | 6.662414 | TGCATTTATTAGTCACTAGTGCAC | 57.338 | 37.500 | 18.45 | 9.40 | 35.41 | 4.57 |
2330 | 3669 | 6.406370 | TGCATTTATTAGTCACTAGTGCACT | 58.594 | 36.000 | 25.12 | 25.12 | 35.41 | 4.40 |
2331 | 3670 | 6.535150 | TGCATTTATTAGTCACTAGTGCACTC | 59.465 | 38.462 | 25.56 | 8.69 | 35.41 | 3.51 |
2332 | 3671 | 6.018669 | GCATTTATTAGTCACTAGTGCACTCC | 60.019 | 42.308 | 25.56 | 7.43 | 0.00 | 3.85 |
2335 | 3674 | 2.595750 | AGTCACTAGTGCACTCCTCT | 57.404 | 50.000 | 25.56 | 12.72 | 0.00 | 3.69 |
2336 | 3675 | 2.442413 | AGTCACTAGTGCACTCCTCTC | 58.558 | 52.381 | 25.56 | 12.42 | 0.00 | 3.20 |
2337 | 3676 | 1.474879 | GTCACTAGTGCACTCCTCTCC | 59.525 | 57.143 | 25.56 | 4.59 | 0.00 | 3.71 |
2338 | 3677 | 1.075536 | TCACTAGTGCACTCCTCTCCA | 59.924 | 52.381 | 25.56 | 2.30 | 0.00 | 3.86 |
2339 | 3678 | 1.476085 | CACTAGTGCACTCCTCTCCAG | 59.524 | 57.143 | 25.56 | 15.71 | 0.00 | 3.86 |
2340 | 3679 | 1.356059 | ACTAGTGCACTCCTCTCCAGA | 59.644 | 52.381 | 25.56 | 0.59 | 0.00 | 3.86 |
2341 | 3680 | 2.225142 | ACTAGTGCACTCCTCTCCAGAA | 60.225 | 50.000 | 25.56 | 0.00 | 0.00 | 3.02 |
2342 | 3681 | 1.722034 | AGTGCACTCCTCTCCAGAAA | 58.278 | 50.000 | 15.25 | 0.00 | 0.00 | 2.52 |
2343 | 3682 | 1.622811 | AGTGCACTCCTCTCCAGAAAG | 59.377 | 52.381 | 15.25 | 0.00 | 0.00 | 2.62 |
2344 | 3683 | 0.322975 | TGCACTCCTCTCCAGAAAGC | 59.677 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2345 | 3684 | 0.392327 | GCACTCCTCTCCAGAAAGCC | 60.392 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2346 | 3685 | 0.979665 | CACTCCTCTCCAGAAAGCCA | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
2347 | 3686 | 1.349026 | CACTCCTCTCCAGAAAGCCAA | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 4.52 |
2348 | 3687 | 2.057922 | ACTCCTCTCCAGAAAGCCAAA | 58.942 | 47.619 | 0.00 | 0.00 | 0.00 | 3.28 |
2362 | 3701 | 7.758528 | CCAGAAAGCCAAATAATTTTCTCAGAG | 59.241 | 37.037 | 0.00 | 0.00 | 37.68 | 3.35 |
2363 | 3702 | 8.517878 | CAGAAAGCCAAATAATTTTCTCAGAGA | 58.482 | 33.333 | 0.00 | 0.00 | 37.68 | 3.10 |
2397 | 3736 | 1.259507 | GCGCGGCGATCAGTATTAAAA | 59.740 | 47.619 | 28.54 | 0.00 | 0.00 | 1.52 |
2424 | 3763 | 4.396478 | TCATGTACACTCCTCTCGAGAAAG | 59.604 | 45.833 | 17.36 | 17.97 | 41.63 | 2.62 |
2426 | 3765 | 1.917872 | ACACTCCTCTCGAGAAAGCT | 58.082 | 50.000 | 17.36 | 5.42 | 41.63 | 3.74 |
2429 | 3768 | 2.230025 | CACTCCTCTCGAGAAAGCTGAA | 59.770 | 50.000 | 17.36 | 0.00 | 41.63 | 3.02 |
2431 | 3770 | 4.097135 | CACTCCTCTCGAGAAAGCTGAATA | 59.903 | 45.833 | 17.36 | 0.00 | 41.63 | 1.75 |
2432 | 3771 | 4.707448 | ACTCCTCTCGAGAAAGCTGAATAA | 59.293 | 41.667 | 17.36 | 0.00 | 41.63 | 1.40 |
2433 | 3772 | 5.362430 | ACTCCTCTCGAGAAAGCTGAATAAT | 59.638 | 40.000 | 17.36 | 0.00 | 41.63 | 1.28 |
2434 | 3773 | 6.547880 | ACTCCTCTCGAGAAAGCTGAATAATA | 59.452 | 38.462 | 17.36 | 0.00 | 41.63 | 0.98 |
2435 | 3774 | 7.232534 | ACTCCTCTCGAGAAAGCTGAATAATAT | 59.767 | 37.037 | 17.36 | 0.00 | 41.63 | 1.28 |
2436 | 3775 | 7.957002 | TCCTCTCGAGAAAGCTGAATAATATT | 58.043 | 34.615 | 17.36 | 0.00 | 0.00 | 1.28 |
2437 | 3776 | 8.424918 | TCCTCTCGAGAAAGCTGAATAATATTT | 58.575 | 33.333 | 17.36 | 0.00 | 0.00 | 1.40 |
2438 | 3777 | 8.494347 | CCTCTCGAGAAAGCTGAATAATATTTG | 58.506 | 37.037 | 17.36 | 0.00 | 0.00 | 2.32 |
2439 | 3778 | 8.948631 | TCTCGAGAAAGCTGAATAATATTTGT | 57.051 | 30.769 | 14.01 | 0.00 | 0.00 | 2.83 |
2440 | 3779 | 9.383519 | TCTCGAGAAAGCTGAATAATATTTGTT | 57.616 | 29.630 | 14.01 | 0.00 | 0.00 | 2.83 |
2441 | 3780 | 9.430838 | CTCGAGAAAGCTGAATAATATTTGTTG | 57.569 | 33.333 | 6.58 | 0.00 | 0.00 | 3.33 |
2442 | 3781 | 8.946085 | TCGAGAAAGCTGAATAATATTTGTTGT | 58.054 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
2447 | 3786 | 9.793252 | AAAGCTGAATAATATTTGTTGTAGCAG | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 4.24 |
2479 | 3818 | 3.961408 | AGATGGTAACCAACTCGATAGCT | 59.039 | 43.478 | 0.00 | 0.00 | 36.95 | 3.32 |
2487 | 3826 | 3.197766 | ACCAACTCGATAGCTGAAATCCA | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
2503 | 3842 | 7.094634 | GCTGAAATCCAAGTCAAAACTCTGATA | 60.095 | 37.037 | 0.00 | 0.00 | 33.48 | 2.15 |
2532 | 3871 | 4.373116 | GGCCAGCGGAGTCGTCAA | 62.373 | 66.667 | 0.00 | 0.00 | 38.89 | 3.18 |
2540 | 3879 | 2.029290 | AGCGGAGTCGTCAACATAAACT | 60.029 | 45.455 | 0.00 | 0.00 | 38.89 | 2.66 |
2561 | 3900 | 3.947834 | CTCAAAGGGTTGACAAAGTCACT | 59.052 | 43.478 | 0.00 | 0.00 | 42.60 | 3.41 |
2630 | 3969 | 5.331098 | CGTAAAGCAATCATGTATGCACAA | 58.669 | 37.500 | 21.54 | 8.20 | 44.95 | 3.33 |
2649 | 3988 | 5.062558 | GCACAACAAATCTTGGCATGTAATC | 59.937 | 40.000 | 0.00 | 0.00 | 34.12 | 1.75 |
2661 | 4000 | 5.438833 | TGGCATGTAATCATCTCAATCACA | 58.561 | 37.500 | 0.00 | 0.00 | 31.15 | 3.58 |
2685 | 4024 | 6.442541 | TCCAAGTTAGTTCCTATGGACAAA | 57.557 | 37.500 | 0.00 | 0.00 | 32.28 | 2.83 |
2697 | 4036 | 1.075542 | TGGACAAATCTACGCAAGCG | 58.924 | 50.000 | 13.50 | 13.50 | 46.03 | 4.68 |
2699 | 4038 | 0.247695 | GACAAATCTACGCAAGCGCC | 60.248 | 55.000 | 15.09 | 0.00 | 44.19 | 6.53 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.788995 | GCGATCAGATCTGCAATCGG | 59.211 | 55.000 | 31.65 | 20.63 | 37.61 | 4.18 |
1 | 2 | 1.780806 | AGCGATCAGATCTGCAATCG | 58.219 | 50.000 | 29.07 | 29.07 | 39.10 | 3.34 |
2 | 3 | 2.155347 | CGAAGCGATCAGATCTGCAATC | 59.845 | 50.000 | 18.36 | 14.86 | 33.42 | 2.67 |
3 | 4 | 2.133553 | CGAAGCGATCAGATCTGCAAT | 58.866 | 47.619 | 18.36 | 7.24 | 33.42 | 3.56 |
4 | 5 | 1.564207 | CGAAGCGATCAGATCTGCAA | 58.436 | 50.000 | 18.36 | 1.80 | 33.42 | 4.08 |
5 | 6 | 0.249197 | CCGAAGCGATCAGATCTGCA | 60.249 | 55.000 | 18.36 | 7.53 | 33.42 | 4.41 |
6 | 7 | 0.943359 | CCCGAAGCGATCAGATCTGC | 60.943 | 60.000 | 18.36 | 15.40 | 0.00 | 4.26 |
7 | 8 | 0.387202 | ACCCGAAGCGATCAGATCTG | 59.613 | 55.000 | 17.07 | 17.07 | 0.00 | 2.90 |
8 | 9 | 1.115467 | AACCCGAAGCGATCAGATCT | 58.885 | 50.000 | 8.82 | 0.00 | 0.00 | 2.75 |
9 | 10 | 1.941325 | AAACCCGAAGCGATCAGATC | 58.059 | 50.000 | 0.00 | 0.00 | 0.00 | 2.75 |
10 | 11 | 2.280628 | GAAAACCCGAAGCGATCAGAT | 58.719 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
11 | 12 | 1.001520 | TGAAAACCCGAAGCGATCAGA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
12 | 13 | 1.438651 | TGAAAACCCGAAGCGATCAG | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
13 | 14 | 2.107950 | ATGAAAACCCGAAGCGATCA | 57.892 | 45.000 | 0.00 | 0.00 | 0.00 | 2.92 |
14 | 15 | 3.487563 | AAATGAAAACCCGAAGCGATC | 57.512 | 42.857 | 0.00 | 0.00 | 0.00 | 3.69 |
15 | 16 | 3.934457 | AAAATGAAAACCCGAAGCGAT | 57.066 | 38.095 | 0.00 | 0.00 | 0.00 | 4.58 |
16 | 17 | 3.551250 | GGAAAAATGAAAACCCGAAGCGA | 60.551 | 43.478 | 0.00 | 0.00 | 0.00 | 4.93 |
17 | 18 | 2.729360 | GGAAAAATGAAAACCCGAAGCG | 59.271 | 45.455 | 0.00 | 0.00 | 0.00 | 4.68 |
18 | 19 | 3.987868 | GAGGAAAAATGAAAACCCGAAGC | 59.012 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
19 | 20 | 4.038642 | TGGAGGAAAAATGAAAACCCGAAG | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
20 | 21 | 3.961408 | TGGAGGAAAAATGAAAACCCGAA | 59.039 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
21 | 22 | 3.567397 | TGGAGGAAAAATGAAAACCCGA | 58.433 | 40.909 | 0.00 | 0.00 | 0.00 | 5.14 |
22 | 23 | 4.535526 | ATGGAGGAAAAATGAAAACCCG | 57.464 | 40.909 | 0.00 | 0.00 | 0.00 | 5.28 |
23 | 24 | 5.817296 | GCATATGGAGGAAAAATGAAAACCC | 59.183 | 40.000 | 4.56 | 0.00 | 0.00 | 4.11 |
24 | 25 | 6.405538 | TGCATATGGAGGAAAAATGAAAACC | 58.594 | 36.000 | 4.56 | 0.00 | 0.00 | 3.27 |
25 | 26 | 9.252962 | CTATGCATATGGAGGAAAAATGAAAAC | 57.747 | 33.333 | 6.92 | 0.00 | 0.00 | 2.43 |
26 | 27 | 9.199645 | TCTATGCATATGGAGGAAAAATGAAAA | 57.800 | 29.630 | 6.92 | 0.00 | 0.00 | 2.29 |
27 | 28 | 8.765488 | TCTATGCATATGGAGGAAAAATGAAA | 57.235 | 30.769 | 6.92 | 0.00 | 0.00 | 2.69 |
28 | 29 | 8.945195 | ATCTATGCATATGGAGGAAAAATGAA | 57.055 | 30.769 | 6.92 | 0.00 | 0.00 | 2.57 |
29 | 30 | 8.945195 | AATCTATGCATATGGAGGAAAAATGA | 57.055 | 30.769 | 6.92 | 0.00 | 0.00 | 2.57 |
30 | 31 | 9.419297 | CAAATCTATGCATATGGAGGAAAAATG | 57.581 | 33.333 | 6.92 | 0.00 | 0.00 | 2.32 |
31 | 32 | 8.591072 | CCAAATCTATGCATATGGAGGAAAAAT | 58.409 | 33.333 | 16.08 | 0.00 | 0.00 | 1.82 |
32 | 33 | 7.564660 | ACCAAATCTATGCATATGGAGGAAAAA | 59.435 | 33.333 | 24.44 | 0.00 | 0.00 | 1.94 |
33 | 34 | 7.068702 | ACCAAATCTATGCATATGGAGGAAAA | 58.931 | 34.615 | 24.44 | 0.00 | 0.00 | 2.29 |
34 | 35 | 6.613699 | ACCAAATCTATGCATATGGAGGAAA | 58.386 | 36.000 | 24.44 | 0.00 | 0.00 | 3.13 |
35 | 36 | 6.204852 | ACCAAATCTATGCATATGGAGGAA | 57.795 | 37.500 | 24.44 | 0.00 | 0.00 | 3.36 |
36 | 37 | 5.848286 | ACCAAATCTATGCATATGGAGGA | 57.152 | 39.130 | 24.44 | 11.87 | 0.00 | 3.71 |
37 | 38 | 6.906157 | AAACCAAATCTATGCATATGGAGG | 57.094 | 37.500 | 24.44 | 16.74 | 0.00 | 4.30 |
45 | 46 | 9.851686 | AGAGTCATATAAAACCAAATCTATGCA | 57.148 | 29.630 | 0.00 | 0.00 | 0.00 | 3.96 |
58 | 59 | 9.472361 | GCCGACAAGTATAAGAGTCATATAAAA | 57.528 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
59 | 60 | 8.635328 | TGCCGACAAGTATAAGAGTCATATAAA | 58.365 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
60 | 61 | 8.173542 | TGCCGACAAGTATAAGAGTCATATAA | 57.826 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
61 | 62 | 7.754851 | TGCCGACAAGTATAAGAGTCATATA | 57.245 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
62 | 63 | 6.650427 | TGCCGACAAGTATAAGAGTCATAT | 57.350 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
63 | 64 | 6.459670 | TTGCCGACAAGTATAAGAGTCATA | 57.540 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
64 | 65 | 5.339008 | TTGCCGACAAGTATAAGAGTCAT | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
65 | 66 | 4.794278 | TTGCCGACAAGTATAAGAGTCA | 57.206 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
66 | 67 | 6.755141 | TGTAATTGCCGACAAGTATAAGAGTC | 59.245 | 38.462 | 0.00 | 0.00 | 38.48 | 3.36 |
67 | 68 | 6.636705 | TGTAATTGCCGACAAGTATAAGAGT | 58.363 | 36.000 | 0.00 | 0.00 | 38.48 | 3.24 |
68 | 69 | 7.715265 | ATGTAATTGCCGACAAGTATAAGAG | 57.285 | 36.000 | 0.00 | 0.00 | 38.48 | 2.85 |
69 | 70 | 9.419297 | GATATGTAATTGCCGACAAGTATAAGA | 57.581 | 33.333 | 0.00 | 0.00 | 38.48 | 2.10 |
70 | 71 | 9.424319 | AGATATGTAATTGCCGACAAGTATAAG | 57.576 | 33.333 | 0.00 | 0.00 | 38.48 | 1.73 |
71 | 72 | 9.772973 | AAGATATGTAATTGCCGACAAGTATAA | 57.227 | 29.630 | 0.00 | 0.00 | 38.48 | 0.98 |
72 | 73 | 9.419297 | GAAGATATGTAATTGCCGACAAGTATA | 57.581 | 33.333 | 0.00 | 0.00 | 38.48 | 1.47 |
73 | 74 | 8.150945 | AGAAGATATGTAATTGCCGACAAGTAT | 58.849 | 33.333 | 0.00 | 0.00 | 38.48 | 2.12 |
74 | 75 | 7.497595 | AGAAGATATGTAATTGCCGACAAGTA | 58.502 | 34.615 | 0.00 | 0.00 | 39.69 | 2.24 |
75 | 76 | 6.349300 | AGAAGATATGTAATTGCCGACAAGT | 58.651 | 36.000 | 0.00 | 0.00 | 39.69 | 3.16 |
76 | 77 | 6.851222 | AGAAGATATGTAATTGCCGACAAG | 57.149 | 37.500 | 0.00 | 0.00 | 39.69 | 3.16 |
77 | 78 | 8.725405 | TTAAGAAGATATGTAATTGCCGACAA | 57.275 | 30.769 | 0.00 | 0.00 | 40.87 | 3.18 |
78 | 79 | 8.773645 | CATTAAGAAGATATGTAATTGCCGACA | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
79 | 80 | 7.746475 | GCATTAAGAAGATATGTAATTGCCGAC | 59.254 | 37.037 | 0.00 | 0.00 | 0.00 | 4.79 |
80 | 81 | 7.661437 | AGCATTAAGAAGATATGTAATTGCCGA | 59.339 | 33.333 | 0.00 | 0.00 | 0.00 | 5.54 |
81 | 82 | 7.810658 | AGCATTAAGAAGATATGTAATTGCCG | 58.189 | 34.615 | 0.00 | 0.00 | 0.00 | 5.69 |
82 | 83 | 9.007901 | AGAGCATTAAGAAGATATGTAATTGCC | 57.992 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
92 | 93 | 9.982651 | AGCGTAAAATAGAGCATTAAGAAGATA | 57.017 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
93 | 94 | 8.894768 | AGCGTAAAATAGAGCATTAAGAAGAT | 57.105 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
94 | 95 | 9.245962 | GTAGCGTAAAATAGAGCATTAAGAAGA | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
95 | 96 | 9.250624 | AGTAGCGTAAAATAGAGCATTAAGAAG | 57.749 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
96 | 97 | 9.595823 | AAGTAGCGTAAAATAGAGCATTAAGAA | 57.404 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
97 | 98 | 9.245962 | GAAGTAGCGTAAAATAGAGCATTAAGA | 57.754 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
98 | 99 | 8.488764 | GGAAGTAGCGTAAAATAGAGCATTAAG | 58.511 | 37.037 | 0.00 | 0.00 | 0.00 | 1.85 |
99 | 100 | 8.202137 | AGGAAGTAGCGTAAAATAGAGCATTAA | 58.798 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
100 | 101 | 7.723324 | AGGAAGTAGCGTAAAATAGAGCATTA | 58.277 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
101 | 102 | 6.583562 | AGGAAGTAGCGTAAAATAGAGCATT | 58.416 | 36.000 | 0.00 | 0.00 | 0.00 | 3.56 |
102 | 103 | 6.041069 | AGAGGAAGTAGCGTAAAATAGAGCAT | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 3.79 |
103 | 104 | 5.360144 | AGAGGAAGTAGCGTAAAATAGAGCA | 59.640 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
104 | 105 | 5.834169 | AGAGGAAGTAGCGTAAAATAGAGC | 58.166 | 41.667 | 0.00 | 0.00 | 0.00 | 4.09 |
105 | 106 | 8.156994 | ACTAGAGGAAGTAGCGTAAAATAGAG | 57.843 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
106 | 107 | 8.517062 | AACTAGAGGAAGTAGCGTAAAATAGA | 57.483 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
107 | 108 | 8.404000 | TGAACTAGAGGAAGTAGCGTAAAATAG | 58.596 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
108 | 109 | 8.284945 | TGAACTAGAGGAAGTAGCGTAAAATA | 57.715 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
109 | 110 | 7.166691 | TGAACTAGAGGAAGTAGCGTAAAAT | 57.833 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
110 | 111 | 6.579666 | TGAACTAGAGGAAGTAGCGTAAAA | 57.420 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
111 | 112 | 6.770746 | ATGAACTAGAGGAAGTAGCGTAAA | 57.229 | 37.500 | 0.00 | 0.00 | 0.00 | 2.01 |
112 | 113 | 7.718314 | TGATATGAACTAGAGGAAGTAGCGTAA | 59.282 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
113 | 114 | 7.222161 | TGATATGAACTAGAGGAAGTAGCGTA | 58.778 | 38.462 | 0.00 | 0.00 | 0.00 | 4.42 |
114 | 115 | 6.062749 | TGATATGAACTAGAGGAAGTAGCGT | 58.937 | 40.000 | 0.00 | 0.00 | 0.00 | 5.07 |
115 | 116 | 6.205853 | ACTGATATGAACTAGAGGAAGTAGCG | 59.794 | 42.308 | 0.00 | 0.00 | 0.00 | 4.26 |
116 | 117 | 7.229707 | TCACTGATATGAACTAGAGGAAGTAGC | 59.770 | 40.741 | 0.00 | 0.00 | 0.00 | 3.58 |
117 | 118 | 8.564574 | GTCACTGATATGAACTAGAGGAAGTAG | 58.435 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
118 | 119 | 8.053355 | TGTCACTGATATGAACTAGAGGAAGTA | 58.947 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
119 | 120 | 6.892456 | TGTCACTGATATGAACTAGAGGAAGT | 59.108 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
120 | 121 | 7.340122 | TGTCACTGATATGAACTAGAGGAAG | 57.660 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
121 | 122 | 7.718334 | TTGTCACTGATATGAACTAGAGGAA | 57.282 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
122 | 123 | 7.904558 | ATTGTCACTGATATGAACTAGAGGA | 57.095 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
135 | 136 | 9.730705 | ATTCGATCCATATTAATTGTCACTGAT | 57.269 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
136 | 137 | 8.992073 | CATTCGATCCATATTAATTGTCACTGA | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
137 | 138 | 8.992073 | TCATTCGATCCATATTAATTGTCACTG | 58.008 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
138 | 139 | 9.559732 | TTCATTCGATCCATATTAATTGTCACT | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
139 | 140 | 9.817365 | CTTCATTCGATCCATATTAATTGTCAC | 57.183 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
140 | 141 | 9.559732 | ACTTCATTCGATCCATATTAATTGTCA | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 3.58 |
153 | 154 | 9.665264 | GGTGAATTTTATTACTTCATTCGATCC | 57.335 | 33.333 | 0.00 | 0.00 | 32.05 | 3.36 |
170 | 171 | 9.230122 | AGATGTTTTTGACAAAAGGTGAATTTT | 57.770 | 25.926 | 12.84 | 0.00 | 42.62 | 1.82 |
171 | 172 | 8.667463 | CAGATGTTTTTGACAAAAGGTGAATTT | 58.333 | 29.630 | 12.84 | 0.00 | 42.62 | 1.82 |
172 | 173 | 8.040132 | TCAGATGTTTTTGACAAAAGGTGAATT | 58.960 | 29.630 | 12.84 | 0.00 | 42.62 | 2.17 |
173 | 174 | 7.492344 | GTCAGATGTTTTTGACAAAAGGTGAAT | 59.508 | 33.333 | 12.84 | 4.87 | 42.62 | 2.57 |
174 | 175 | 6.811170 | GTCAGATGTTTTTGACAAAAGGTGAA | 59.189 | 34.615 | 12.84 | 0.00 | 42.62 | 3.18 |
175 | 176 | 6.329496 | GTCAGATGTTTTTGACAAAAGGTGA | 58.671 | 36.000 | 12.84 | 9.78 | 42.62 | 4.02 |
176 | 177 | 6.573617 | GTCAGATGTTTTTGACAAAAGGTG | 57.426 | 37.500 | 12.84 | 7.99 | 42.62 | 4.00 |
197 | 198 | 2.683968 | TCTGCCACGTGAATTAGTGTC | 58.316 | 47.619 | 19.30 | 0.00 | 36.69 | 3.67 |
198 | 199 | 2.831685 | TCTGCCACGTGAATTAGTGT | 57.168 | 45.000 | 19.30 | 0.00 | 36.69 | 3.55 |
228 | 229 | 5.651172 | TCCATATTCTTGAACGCGTATTG | 57.349 | 39.130 | 14.46 | 3.42 | 0.00 | 1.90 |
229 | 230 | 6.315393 | ACTTTCCATATTCTTGAACGCGTATT | 59.685 | 34.615 | 14.46 | 0.00 | 0.00 | 1.89 |
231 | 232 | 5.172934 | ACTTTCCATATTCTTGAACGCGTA | 58.827 | 37.500 | 14.46 | 0.00 | 0.00 | 4.42 |
278 | 325 | 5.008118 | GCTAAGGAACCATAGACATTCTTGC | 59.992 | 44.000 | 7.21 | 0.00 | 0.00 | 4.01 |
344 | 391 | 1.971695 | GCGCAGGTTGCTTAACCCT | 60.972 | 57.895 | 0.30 | 0.00 | 43.87 | 4.34 |
345 | 392 | 2.566529 | GCGCAGGTTGCTTAACCC | 59.433 | 61.111 | 0.30 | 0.00 | 43.87 | 4.11 |
360 | 407 | 2.815647 | GTGGGAAGAGAAGCCGCG | 60.816 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
421 | 469 | 3.434940 | AGCTTAATTTCCGTGGGAACT | 57.565 | 42.857 | 0.00 | 0.00 | 41.87 | 3.01 |
422 | 470 | 3.504520 | TCAAGCTTAATTTCCGTGGGAAC | 59.495 | 43.478 | 0.00 | 0.00 | 41.87 | 3.62 |
423 | 471 | 3.756434 | CTCAAGCTTAATTTCCGTGGGAA | 59.244 | 43.478 | 0.00 | 0.00 | 40.27 | 3.97 |
424 | 472 | 3.343617 | CTCAAGCTTAATTTCCGTGGGA | 58.656 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
425 | 473 | 2.159379 | GCTCAAGCTTAATTTCCGTGGG | 60.159 | 50.000 | 0.00 | 0.00 | 38.21 | 4.61 |
487 | 536 | 6.035866 | TGAGCAAAACAATGTAGCAAAAACTG | 59.964 | 34.615 | 7.84 | 0.00 | 0.00 | 3.16 |
495 | 544 | 4.442073 | CACACTTGAGCAAAACAATGTAGC | 59.558 | 41.667 | 0.00 | 0.00 | 0.00 | 3.58 |
511 | 560 | 3.557207 | GCAAGAGGCAACACACTTG | 57.443 | 52.632 | 0.00 | 0.00 | 43.97 | 3.16 |
583 | 634 | 3.405831 | TGTCTTCTGGAATGTGCTCTTG | 58.594 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
705 | 770 | 1.449070 | CTTCGGGGGTAAAGGCGAC | 60.449 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
709 | 774 | 2.555325 | GTTGAAACTTCGGGGGTAAAGG | 59.445 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
711 | 776 | 2.220313 | CGTTGAAACTTCGGGGGTAAA | 58.780 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
714 | 779 | 1.228033 | CCGTTGAAACTTCGGGGGT | 60.228 | 57.895 | 0.00 | 0.00 | 40.49 | 4.95 |
715 | 780 | 3.663202 | CCGTTGAAACTTCGGGGG | 58.337 | 61.111 | 0.00 | 0.00 | 40.49 | 5.40 |
723 | 788 | 1.957877 | TCCCATTTCCACCGTTGAAAC | 59.042 | 47.619 | 0.12 | 0.00 | 34.77 | 2.78 |
751 | 816 | 1.651240 | CTGCCATTGCCTCAACTCCG | 61.651 | 60.000 | 0.00 | 0.00 | 36.33 | 4.63 |
824 | 900 | 8.782339 | AGCTAATGCAAAAGCAAAATAAAGAT | 57.218 | 26.923 | 21.56 | 0.00 | 41.32 | 2.40 |
849 | 925 | 4.718276 | ACGGAGGTAAAAGGAGGCTAATAA | 59.282 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
871 | 956 | 1.162698 | GGCCAAGGGAACGAAGTAAC | 58.837 | 55.000 | 0.00 | 0.00 | 45.00 | 2.50 |
889 | 974 | 0.539669 | ACGGGAAAGCAAAAGGGAGG | 60.540 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
923 | 1010 | 1.277557 | GAGAGGAGAAGAAGCCAAGCA | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
949 | 1036 | 2.104111 | TCACCAACGAAACCACAGAGAT | 59.896 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
1114 | 1229 | 1.938577 | CTGCAGAATGATCTTGGACGG | 59.061 | 52.381 | 8.42 | 0.00 | 39.69 | 4.79 |
1115 | 1230 | 1.329906 | GCTGCAGAATGATCTTGGACG | 59.670 | 52.381 | 20.43 | 0.00 | 39.69 | 4.79 |
1116 | 1231 | 1.674962 | GGCTGCAGAATGATCTTGGAC | 59.325 | 52.381 | 20.43 | 0.00 | 39.69 | 4.02 |
1368 | 1483 | 0.462047 | GGATGACGACGCCCATCTTT | 60.462 | 55.000 | 22.03 | 0.00 | 39.19 | 2.52 |
1396 | 1511 | 1.884444 | GGAAGAAGAGCTCGACGGT | 59.116 | 57.895 | 8.37 | 0.55 | 0.00 | 4.83 |
1530 | 1663 | 3.535629 | CTGGTTGAGCAGGTCCGCA | 62.536 | 63.158 | 8.15 | 0.00 | 0.00 | 5.69 |
1717 | 1850 | 3.009723 | GAGCATCGATCCAGAAACCAAA | 58.990 | 45.455 | 0.00 | 0.00 | 0.00 | 3.28 |
1788 | 1930 | 6.018425 | AGTCGATCTGTTTGCTTTGCTATATG | 60.018 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
1789 | 1931 | 6.051717 | AGTCGATCTGTTTGCTTTGCTATAT | 58.948 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
1790 | 1932 | 5.419542 | AGTCGATCTGTTTGCTTTGCTATA | 58.580 | 37.500 | 0.00 | 0.00 | 0.00 | 1.31 |
1791 | 1933 | 4.256920 | AGTCGATCTGTTTGCTTTGCTAT | 58.743 | 39.130 | 0.00 | 0.00 | 0.00 | 2.97 |
1825 | 3131 | 3.053831 | AGCGCAAACCACACTAGTAAT | 57.946 | 42.857 | 11.47 | 0.00 | 0.00 | 1.89 |
1826 | 3132 | 2.536761 | AGCGCAAACCACACTAGTAA | 57.463 | 45.000 | 11.47 | 0.00 | 0.00 | 2.24 |
1827 | 3133 | 2.139917 | CAAGCGCAAACCACACTAGTA | 58.860 | 47.619 | 11.47 | 0.00 | 0.00 | 1.82 |
1828 | 3134 | 0.944386 | CAAGCGCAAACCACACTAGT | 59.056 | 50.000 | 11.47 | 0.00 | 0.00 | 2.57 |
1829 | 3135 | 0.944386 | ACAAGCGCAAACCACACTAG | 59.056 | 50.000 | 11.47 | 0.00 | 0.00 | 2.57 |
1852 | 3165 | 6.128661 | CGGATCGAGTAAACAAGAATGTGAAA | 60.129 | 38.462 | 0.00 | 0.00 | 40.46 | 2.69 |
1889 | 3202 | 0.327591 | AAGCTTTGAGGCTCCAGGAG | 59.672 | 55.000 | 12.81 | 12.81 | 42.24 | 3.69 |
1890 | 3203 | 0.326264 | GAAGCTTTGAGGCTCCAGGA | 59.674 | 55.000 | 12.86 | 0.00 | 42.24 | 3.86 |
1891 | 3204 | 0.037303 | TGAAGCTTTGAGGCTCCAGG | 59.963 | 55.000 | 12.86 | 2.23 | 42.24 | 4.45 |
1892 | 3205 | 1.743958 | CATGAAGCTTTGAGGCTCCAG | 59.256 | 52.381 | 12.86 | 9.19 | 42.24 | 3.86 |
1893 | 3206 | 1.830279 | CATGAAGCTTTGAGGCTCCA | 58.170 | 50.000 | 12.86 | 0.00 | 42.24 | 3.86 |
1894 | 3207 | 0.455005 | GCATGAAGCTTTGAGGCTCC | 59.545 | 55.000 | 12.86 | 0.00 | 42.24 | 4.70 |
1895 | 3208 | 1.171308 | TGCATGAAGCTTTGAGGCTC | 58.829 | 50.000 | 7.79 | 7.79 | 45.94 | 4.70 |
1896 | 3209 | 1.271656 | GTTGCATGAAGCTTTGAGGCT | 59.728 | 47.619 | 14.65 | 0.00 | 45.94 | 4.58 |
1897 | 3210 | 1.000060 | TGTTGCATGAAGCTTTGAGGC | 60.000 | 47.619 | 0.00 | 4.70 | 45.94 | 4.70 |
1901 | 3214 | 4.548494 | TGTACATGTTGCATGAAGCTTTG | 58.452 | 39.130 | 15.03 | 0.00 | 45.94 | 2.77 |
1910 | 3223 | 0.959867 | TGCCGCTGTACATGTTGCAT | 60.960 | 50.000 | 2.30 | 0.00 | 0.00 | 3.96 |
1932 | 3245 | 6.561614 | AGACAAGTACTACATACGACCATTG | 58.438 | 40.000 | 0.00 | 0.00 | 38.97 | 2.82 |
1964 | 3277 | 7.272037 | TGAGATTCACGATGTACAAGCTATA | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 1.31 |
1965 | 3278 | 6.149129 | TGAGATTCACGATGTACAAGCTAT | 57.851 | 37.500 | 0.00 | 0.00 | 0.00 | 2.97 |
1967 | 3280 | 4.456280 | TGAGATTCACGATGTACAAGCT | 57.544 | 40.909 | 0.00 | 0.00 | 0.00 | 3.74 |
1968 | 3281 | 8.590470 | CATATATGAGATTCACGATGTACAAGC | 58.410 | 37.037 | 6.92 | 0.00 | 0.00 | 4.01 |
1969 | 3282 | 9.080915 | CCATATATGAGATTCACGATGTACAAG | 57.919 | 37.037 | 14.54 | 0.00 | 0.00 | 3.16 |
2003 | 3316 | 9.516314 | GTCTGCAACAAGTTAATAAAGTTTTCT | 57.484 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2005 | 3318 | 9.816354 | ATGTCTGCAACAAGTTAATAAAGTTTT | 57.184 | 25.926 | 5.94 | 0.00 | 42.37 | 2.43 |
2026 | 3339 | 7.676043 | AGCACCACTACCATCTATTATATGTCT | 59.324 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2035 | 3348 | 4.904251 | AGAATCAGCACCACTACCATCTAT | 59.096 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
2036 | 3349 | 4.100035 | CAGAATCAGCACCACTACCATCTA | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 1.98 |
2037 | 3350 | 3.110705 | AGAATCAGCACCACTACCATCT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2044 | 3357 | 2.158842 | GGCTATCAGAATCAGCACCACT | 60.159 | 50.000 | 4.85 | 0.00 | 37.02 | 4.00 |
2069 | 3382 | 2.235016 | GAGATAGCCATGGAGAGTCGT | 58.765 | 52.381 | 18.40 | 0.00 | 0.00 | 4.34 |
2085 | 3398 | 3.398920 | CGCATTCGCAACGGAGAT | 58.601 | 55.556 | 0.00 | 0.00 | 38.40 | 2.75 |
2124 | 3437 | 1.801913 | GTGTGAGCGCTCGTACCAG | 60.802 | 63.158 | 30.75 | 0.00 | 0.00 | 4.00 |
2134 | 3447 | 4.496183 | GTCTAATTTAGACGAGTGTGAGCG | 59.504 | 45.833 | 18.22 | 0.00 | 44.90 | 5.03 |
2145 | 3458 | 6.470737 | GGAGAAGCCAGCGTCTAATTTAGAC | 61.471 | 48.000 | 21.62 | 21.62 | 43.14 | 2.59 |
2146 | 3459 | 4.441634 | GGAGAAGCCAGCGTCTAATTTAGA | 60.442 | 45.833 | 8.09 | 1.90 | 35.07 | 2.10 |
2147 | 3460 | 3.804873 | GGAGAAGCCAGCGTCTAATTTAG | 59.195 | 47.826 | 8.09 | 0.00 | 35.07 | 1.85 |
2148 | 3461 | 3.451178 | AGGAGAAGCCAGCGTCTAATTTA | 59.549 | 43.478 | 8.09 | 0.00 | 40.02 | 1.40 |
2149 | 3462 | 2.237392 | AGGAGAAGCCAGCGTCTAATTT | 59.763 | 45.455 | 8.09 | 0.00 | 40.02 | 1.82 |
2150 | 3463 | 1.834263 | AGGAGAAGCCAGCGTCTAATT | 59.166 | 47.619 | 8.09 | 0.00 | 40.02 | 1.40 |
2151 | 3464 | 1.410882 | GAGGAGAAGCCAGCGTCTAAT | 59.589 | 52.381 | 8.09 | 0.35 | 40.02 | 1.73 |
2152 | 3465 | 0.818296 | GAGGAGAAGCCAGCGTCTAA | 59.182 | 55.000 | 8.09 | 0.00 | 40.02 | 2.10 |
2153 | 3466 | 0.323451 | TGAGGAGAAGCCAGCGTCTA | 60.323 | 55.000 | 8.09 | 0.00 | 40.02 | 2.59 |
2154 | 3467 | 1.603236 | CTGAGGAGAAGCCAGCGTCT | 61.603 | 60.000 | 7.84 | 7.84 | 40.02 | 4.18 |
2155 | 3468 | 1.153667 | CTGAGGAGAAGCCAGCGTC | 60.154 | 63.158 | 0.00 | 0.00 | 40.02 | 5.19 |
2156 | 3469 | 1.476007 | AACTGAGGAGAAGCCAGCGT | 61.476 | 55.000 | 0.00 | 0.00 | 40.02 | 5.07 |
2157 | 3470 | 0.321122 | AAACTGAGGAGAAGCCAGCG | 60.321 | 55.000 | 0.00 | 0.00 | 40.02 | 5.18 |
2158 | 3471 | 1.447945 | GAAACTGAGGAGAAGCCAGC | 58.552 | 55.000 | 0.00 | 0.00 | 40.02 | 4.85 |
2159 | 3472 | 1.627834 | AGGAAACTGAGGAGAAGCCAG | 59.372 | 52.381 | 0.00 | 0.00 | 41.13 | 4.85 |
2160 | 3473 | 1.625818 | GAGGAAACTGAGGAGAAGCCA | 59.374 | 52.381 | 0.00 | 0.00 | 44.43 | 4.75 |
2161 | 3474 | 1.905894 | AGAGGAAACTGAGGAGAAGCC | 59.094 | 52.381 | 0.00 | 0.00 | 44.43 | 4.35 |
2162 | 3475 | 5.351948 | AATAGAGGAAACTGAGGAGAAGC | 57.648 | 43.478 | 0.00 | 0.00 | 44.43 | 3.86 |
2163 | 3476 | 6.928492 | GCATAATAGAGGAAACTGAGGAGAAG | 59.072 | 42.308 | 0.00 | 0.00 | 44.43 | 2.85 |
2164 | 3477 | 6.183361 | GGCATAATAGAGGAAACTGAGGAGAA | 60.183 | 42.308 | 0.00 | 0.00 | 44.43 | 2.87 |
2165 | 3478 | 5.305644 | GGCATAATAGAGGAAACTGAGGAGA | 59.694 | 44.000 | 0.00 | 0.00 | 44.43 | 3.71 |
2166 | 3479 | 5.306678 | AGGCATAATAGAGGAAACTGAGGAG | 59.693 | 44.000 | 0.00 | 0.00 | 44.43 | 3.69 |
2167 | 3480 | 5.219739 | AGGCATAATAGAGGAAACTGAGGA | 58.780 | 41.667 | 0.00 | 0.00 | 44.43 | 3.71 |
2177 | 3490 | 4.963318 | TCAACTGGAGGCATAATAGAGG | 57.037 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2229 | 3545 | 7.231467 | TGAGGGAAGGAAATAAAGCCATATAC | 58.769 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
2230 | 3546 | 7.401060 | TGAGGGAAGGAAATAAAGCCATATA | 57.599 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
2231 | 3547 | 6.279813 | TGAGGGAAGGAAATAAAGCCATAT | 57.720 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
2232 | 3548 | 5.725551 | TGAGGGAAGGAAATAAAGCCATA | 57.274 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
2233 | 3549 | 4.608170 | TGAGGGAAGGAAATAAAGCCAT | 57.392 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
2235 | 3551 | 4.158579 | CACTTGAGGGAAGGAAATAAAGCC | 59.841 | 45.833 | 0.00 | 0.00 | 35.78 | 4.35 |
2236 | 3552 | 4.158579 | CCACTTGAGGGAAGGAAATAAAGC | 59.841 | 45.833 | 0.00 | 0.00 | 35.78 | 3.51 |
2237 | 3553 | 5.325239 | ACCACTTGAGGGAAGGAAATAAAG | 58.675 | 41.667 | 0.00 | 0.00 | 35.78 | 1.85 |
2239 | 3555 | 4.263771 | GGACCACTTGAGGGAAGGAAATAA | 60.264 | 45.833 | 0.00 | 0.00 | 35.78 | 1.40 |
2277 | 3616 | 7.961326 | ATTGCAAGTCCCTATGTTTAATTCT | 57.039 | 32.000 | 4.94 | 0.00 | 0.00 | 2.40 |
2302 | 3641 | 9.389755 | TGCACTAGTGACTAATAAATGCAAATA | 57.610 | 29.630 | 27.08 | 0.00 | 37.59 | 1.40 |
2304 | 3643 | 7.390440 | AGTGCACTAGTGACTAATAAATGCAAA | 59.610 | 33.333 | 27.08 | 0.00 | 41.76 | 3.68 |
2313 | 3652 | 4.605183 | AGAGGAGTGCACTAGTGACTAAT | 58.395 | 43.478 | 27.08 | 16.11 | 0.00 | 1.73 |
2321 | 3660 | 2.136298 | TCTGGAGAGGAGTGCACTAG | 57.864 | 55.000 | 21.73 | 11.86 | 0.00 | 2.57 |
2327 | 3666 | 0.979665 | TGGCTTTCTGGAGAGGAGTG | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2328 | 3667 | 1.734655 | TTGGCTTTCTGGAGAGGAGT | 58.265 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2329 | 3668 | 2.867109 | TTTGGCTTTCTGGAGAGGAG | 57.133 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2330 | 3669 | 4.927267 | TTATTTGGCTTTCTGGAGAGGA | 57.073 | 40.909 | 0.00 | 0.00 | 0.00 | 3.71 |
2331 | 3670 | 6.535963 | AAATTATTTGGCTTTCTGGAGAGG | 57.464 | 37.500 | 0.00 | 0.00 | 0.00 | 3.69 |
2332 | 3671 | 7.834803 | AGAAAATTATTTGGCTTTCTGGAGAG | 58.165 | 34.615 | 0.00 | 0.00 | 36.89 | 3.20 |
2335 | 3674 | 7.451255 | TCTGAGAAAATTATTTGGCTTTCTGGA | 59.549 | 33.333 | 0.90 | 0.00 | 38.05 | 3.86 |
2336 | 3675 | 7.605449 | TCTGAGAAAATTATTTGGCTTTCTGG | 58.395 | 34.615 | 0.90 | 0.00 | 38.05 | 3.86 |
2337 | 3676 | 8.517878 | TCTCTGAGAAAATTATTTGGCTTTCTG | 58.482 | 33.333 | 4.57 | 0.00 | 38.05 | 3.02 |
2338 | 3677 | 8.641498 | TCTCTGAGAAAATTATTTGGCTTTCT | 57.359 | 30.769 | 4.57 | 0.00 | 40.06 | 2.52 |
2339 | 3678 | 9.866798 | AATCTCTGAGAAAATTATTTGGCTTTC | 57.133 | 29.630 | 12.00 | 0.00 | 0.00 | 2.62 |
2340 | 3679 | 9.649167 | CAATCTCTGAGAAAATTATTTGGCTTT | 57.351 | 29.630 | 12.00 | 0.00 | 0.00 | 3.51 |
2341 | 3680 | 8.810041 | ACAATCTCTGAGAAAATTATTTGGCTT | 58.190 | 29.630 | 12.00 | 0.00 | 0.00 | 4.35 |
2342 | 3681 | 8.358582 | ACAATCTCTGAGAAAATTATTTGGCT | 57.641 | 30.769 | 12.00 | 0.00 | 0.00 | 4.75 |
2343 | 3682 | 8.465201 | AGACAATCTCTGAGAAAATTATTTGGC | 58.535 | 33.333 | 12.00 | 11.48 | 0.00 | 4.52 |
2362 | 3701 | 1.514136 | CGCGCTCGAAAAAGACAATC | 58.486 | 50.000 | 5.56 | 0.00 | 38.10 | 2.67 |
2363 | 3702 | 0.165944 | CCGCGCTCGAAAAAGACAAT | 59.834 | 50.000 | 5.56 | 0.00 | 38.10 | 2.71 |
2370 | 3709 | 3.550992 | GATCGCCGCGCTCGAAAA | 61.551 | 61.111 | 21.79 | 3.95 | 39.54 | 2.29 |
2375 | 3714 | 0.386858 | TAATACTGATCGCCGCGCTC | 60.387 | 55.000 | 8.21 | 9.00 | 0.00 | 5.03 |
2397 | 3736 | 5.419155 | TCTCGAGAGGAGTGTACATGAAAAT | 59.581 | 40.000 | 12.08 | 0.00 | 43.60 | 1.82 |
2409 | 3748 | 2.208132 | TCAGCTTTCTCGAGAGGAGT | 57.792 | 50.000 | 15.94 | 6.28 | 43.60 | 3.85 |
2424 | 3763 | 7.166473 | GCACTGCTACAACAAATATTATTCAGC | 59.834 | 37.037 | 0.00 | 0.00 | 0.00 | 4.26 |
2426 | 3765 | 8.183536 | CAGCACTGCTACAACAAATATTATTCA | 58.816 | 33.333 | 2.39 | 0.00 | 36.40 | 2.57 |
2447 | 3786 | 2.280628 | GGTTACCATCTGTAGCAGCAC | 58.719 | 52.381 | 0.00 | 0.00 | 32.70 | 4.40 |
2479 | 3818 | 8.156820 | TCTATCAGAGTTTTGACTTGGATTTCA | 58.843 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2487 | 3826 | 9.902684 | ATGAATGATCTATCAGAGTTTTGACTT | 57.097 | 29.630 | 7.04 | 0.00 | 40.64 | 3.01 |
2503 | 3842 | 1.002888 | CCGCTGGCCTATGAATGATCT | 59.997 | 52.381 | 3.32 | 0.00 | 0.00 | 2.75 |
2532 | 3871 | 6.379988 | ACTTTGTCAACCCTTTGAGTTTATGT | 59.620 | 34.615 | 0.00 | 0.00 | 42.60 | 2.29 |
2540 | 3879 | 3.694072 | CAGTGACTTTGTCAACCCTTTGA | 59.306 | 43.478 | 1.73 | 0.00 | 44.49 | 2.69 |
2630 | 3969 | 6.604396 | TGAGATGATTACATGCCAAGATTTGT | 59.396 | 34.615 | 0.00 | 0.00 | 36.82 | 2.83 |
2649 | 3988 | 7.201679 | GGAACTAACTTGGATGTGATTGAGATG | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
2661 | 4000 | 6.636454 | TTGTCCATAGGAACTAACTTGGAT | 57.364 | 37.500 | 0.00 | 0.00 | 45.69 | 3.41 |
2685 | 4024 | 0.461870 | TCAATGGCGCTTGCGTAGAT | 60.462 | 50.000 | 16.38 | 3.70 | 40.46 | 1.98 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.