Multiple sequence alignment - TraesCS2A01G004700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G004700 chr2A 100.000 6573 0 0 1 6573 2482774 2476202 0.000000e+00 12139.0
1 TraesCS2A01G004700 chr2A 88.710 62 7 0 2977 3038 125220127 125220066 7.070000e-10 76.8
2 TraesCS2A01G004700 chrUn 90.354 4043 218 69 2619 6568 15903687 15899724 0.000000e+00 5147.0
3 TraesCS2A01G004700 chrUn 88.203 1102 93 18 1547 2622 15905064 15903974 0.000000e+00 1280.0
4 TraesCS2A01G004700 chrUn 84.722 1008 39 42 423 1381 15906125 15905184 0.000000e+00 902.0
5 TraesCS2A01G004700 chrUn 87.847 288 26 4 8 292 15906557 15906276 4.910000e-86 329.0
6 TraesCS2A01G004700 chrUn 92.188 64 5 0 3923 3986 15903780 15903717 2.520000e-14 91.6
7 TraesCS2A01G004700 chrUn 92.453 53 4 0 2570 2622 15903912 15903964 7.070000e-10 76.8
8 TraesCS2A01G004700 chr2D 93.669 2322 113 17 2990 5301 2477229 2479526 0.000000e+00 3443.0
9 TraesCS2A01G004700 chr2D 87.741 1452 91 37 5 1428 2474109 2475501 0.000000e+00 1615.0
10 TraesCS2A01G004700 chr2D 92.089 948 60 10 1681 2622 2475690 2476628 0.000000e+00 1321.0
11 TraesCS2A01G004700 chr2D 85.668 1228 74 42 5354 6514 2480017 2481209 0.000000e+00 1199.0
12 TraesCS2A01G004700 chr2D 92.949 312 13 4 2619 2924 2476915 2477223 4.680000e-121 446.0
13 TraesCS2A01G004700 chr2D 94.231 104 6 0 1855 1958 218112631 218112528 6.820000e-35 159.0
14 TraesCS2A01G004700 chr2D 93.548 62 4 0 3922 3983 2476821 2476882 7.020000e-15 93.5
15 TraesCS2A01G004700 chr2D 97.778 45 1 0 2578 2622 402550229 402550273 1.970000e-10 78.7
16 TraesCS2A01G004700 chr2D 92.453 53 4 0 2570 2622 2476690 2476638 7.070000e-10 76.8
17 TraesCS2A01G004700 chr5D 92.529 522 27 6 1855 2369 480311761 480312277 0.000000e+00 737.0
18 TraesCS2A01G004700 chr5D 92.908 282 18 2 2039 2319 31389268 31389548 6.140000e-110 409.0
19 TraesCS2A01G004700 chr5D 97.727 44 1 0 2579 2622 319252138 319252181 7.070000e-10 76.8
20 TraesCS2A01G004700 chr7B 90.818 501 33 4 1875 2369 421080534 421080041 0.000000e+00 658.0
21 TraesCS2A01G004700 chr7B 88.177 203 19 2 1231 1433 583963397 583963200 3.060000e-58 237.0
22 TraesCS2A01G004700 chr7B 79.026 267 43 8 1493 1751 583963175 583962914 3.150000e-38 171.0
23 TraesCS2A01G004700 chr1D 89.607 356 27 7 1855 2203 347312161 347311809 1.680000e-120 444.0
24 TraesCS2A01G004700 chr1D 85.440 364 36 13 8 366 60429486 60429135 4.840000e-96 363.0
25 TraesCS2A01G004700 chr1D 96.970 66 2 0 2304 2369 347311810 347311745 1.940000e-20 111.0
26 TraesCS2A01G004700 chr1D 84.348 115 8 4 468 582 60429030 60428926 3.240000e-18 104.0
27 TraesCS2A01G004700 chr1D 97.778 45 1 0 2578 2622 143955632 143955588 1.970000e-10 78.7
28 TraesCS2A01G004700 chr1D 92.727 55 3 1 2974 3027 206041025 206040971 1.970000e-10 78.7
29 TraesCS2A01G004700 chr6D 88.172 372 33 5 1062 1433 212501231 212501591 3.640000e-117 433.0
30 TraesCS2A01G004700 chr6D 80.066 607 88 22 1987 2582 212501625 212502209 2.830000e-113 420.0
31 TraesCS2A01G004700 chr6D 88.966 145 9 4 1290 1433 152613468 152613606 8.760000e-39 172.0
32 TraesCS2A01G004700 chr1B 93.972 282 15 2 2039 2319 32215557 32215837 6.090000e-115 425.0
33 TraesCS2A01G004700 chr1B 92.657 286 18 3 2039 2323 35118355 35118638 6.140000e-110 409.0
34 TraesCS2A01G004700 chr1B 88.350 206 19 2 1228 1433 348855499 348855299 6.580000e-60 243.0
35 TraesCS2A01G004700 chr1B 95.062 81 4 0 1850 1930 35118276 35118356 1.920000e-25 128.0
36 TraesCS2A01G004700 chr1B 93.827 81 5 0 1850 1930 32215478 32215558 8.950000e-24 122.0
37 TraesCS2A01G004700 chr3B 93.617 282 16 2 2039 2319 32694693 32694973 2.830000e-113 420.0
38 TraesCS2A01G004700 chr3B 87.387 333 15 16 423 745 8733720 8733405 2.250000e-94 357.0
39 TraesCS2A01G004700 chr3B 84.953 319 34 5 8 325 8734154 8733849 1.780000e-80 311.0
40 TraesCS2A01G004700 chr3B 87.379 206 21 2 1228 1433 457195927 457195727 1.430000e-56 231.0
41 TraesCS2A01G004700 chr6B 92.908 282 18 2 2039 2319 333648705 333648425 6.140000e-110 409.0
42 TraesCS2A01G004700 chr6B 84.123 359 35 8 1009 1367 633722619 633722955 1.770000e-85 327.0
43 TraesCS2A01G004700 chr6B 96.296 81 3 0 1850 1930 78672302 78672222 4.130000e-27 134.0
44 TraesCS2A01G004700 chr6B 96.296 81 3 0 1850 1930 333648784 333648704 4.130000e-27 134.0
45 TraesCS2A01G004700 chr5B 92.908 282 18 2 2039 2319 466064000 466064280 6.140000e-110 409.0
46 TraesCS2A01G004700 chr5B 94.366 71 3 1 468 538 536510855 536510786 2.510000e-19 108.0
47 TraesCS2A01G004700 chr3D 88.110 328 15 17 423 745 7130109 7129801 1.040000e-97 368.0
48 TraesCS2A01G004700 chr3D 85.672 335 30 7 8 339 7130540 7130221 2.940000e-88 337.0
49 TraesCS2A01G004700 chr3D 88.000 150 12 3 1284 1433 345228167 345228310 8.760000e-39 172.0
50 TraesCS2A01G004700 chr3D 95.652 46 2 0 2972 3017 97200840 97200885 2.540000e-09 75.0
51 TraesCS2A01G004700 chr3D 92.453 53 2 2 2905 2957 477251687 477251737 2.540000e-09 75.0
52 TraesCS2A01G004700 chr3A 87.963 324 20 15 423 745 13155429 13155734 1.350000e-96 364.0
53 TraesCS2A01G004700 chr3A 84.472 322 35 6 5 325 13154989 13155296 2.980000e-78 303.0
54 TraesCS2A01G004700 chr7A 89.320 206 17 3 1228 1433 510720066 510720266 3.040000e-63 254.0
55 TraesCS2A01G004700 chr7A 97.778 45 1 0 2578 2622 330430300 330430256 1.970000e-10 78.7
56 TraesCS2A01G004700 chr7D 88.835 206 18 2 1228 1433 470051825 470052025 1.420000e-61 248.0
57 TraesCS2A01G004700 chr7D 94.231 104 6 0 1855 1958 623714814 623714711 6.820000e-35 159.0
58 TraesCS2A01G004700 chr7D 86.000 150 15 3 1284 1433 257171853 257171710 8.820000e-34 156.0
59 TraesCS2A01G004700 chr7D 92.727 55 4 0 2969 3023 568464240 568464294 5.460000e-11 80.5
60 TraesCS2A01G004700 chr2B 82.609 299 33 15 73 366 757833195 757832911 5.090000e-61 246.0
61 TraesCS2A01G004700 chr2B 84.348 115 8 4 468 582 757704672 757704568 3.240000e-18 104.0
62 TraesCS2A01G004700 chr2B 83.478 115 9 4 468 582 757697973 757697869 1.510000e-16 99.0
63 TraesCS2A01G004700 chr2B 83.478 115 9 4 468 582 757832806 757832702 1.510000e-16 99.0
64 TraesCS2A01G004700 chr2B 93.103 58 2 2 2901 2957 794694553 794694497 4.220000e-12 84.2
65 TraesCS2A01G004700 chr2B 93.103 58 2 2 2901 2957 794803454 794803398 4.220000e-12 84.2
66 TraesCS2A01G004700 chr2B 100.000 43 0 0 2901 2943 729528012 729527970 5.460000e-11 80.5
67 TraesCS2A01G004700 chr2B 86.364 66 8 1 2959 3024 522090601 522090537 3.290000e-08 71.3
68 TraesCS2A01G004700 chr4A 88.679 159 13 2 1254 1412 281078680 281078527 8.700000e-44 189.0
69 TraesCS2A01G004700 chr4B 84.298 121 9 4 462 582 623071138 623071248 6.970000e-20 110.0
70 TraesCS2A01G004700 chr6A 94.231 52 2 1 2970 3021 454654011 454654061 1.970000e-10 78.7
71 TraesCS2A01G004700 chr6A 92.727 55 3 1 2964 3017 502715187 502715133 1.970000e-10 78.7
72 TraesCS2A01G004700 chr6A 89.831 59 6 0 2977 3035 23967321 23967379 7.070000e-10 76.8
73 TraesCS2A01G004700 chr6A 88.136 59 6 1 2885 2943 584511342 584511399 1.180000e-07 69.4
74 TraesCS2A01G004700 chr1A 97.778 45 1 0 2578 2622 145375699 145375743 1.970000e-10 78.7
75 TraesCS2A01G004700 chr1A 88.136 59 6 1 2885 2943 505489763 505489820 1.180000e-07 69.4
76 TraesCS2A01G004700 chr4D 93.878 49 3 0 2895 2943 472879849 472879897 2.540000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G004700 chr2A 2476202 2482774 6572 True 12139.000000 12139 100.0000 1 6573 1 chr2A.!!$R1 6572
1 TraesCS2A01G004700 chrUn 15899724 15906557 6833 True 1549.920000 5147 88.6628 8 6568 5 chrUn.!!$R1 6560
2 TraesCS2A01G004700 chr2D 2474109 2481209 7100 False 1352.916667 3443 90.9440 5 6514 6 chr2D.!!$F2 6509
3 TraesCS2A01G004700 chr5D 480311761 480312277 516 False 737.000000 737 92.5290 1855 2369 1 chr5D.!!$F3 514
4 TraesCS2A01G004700 chr1D 60428926 60429486 560 True 233.500000 363 84.8940 8 582 2 chr1D.!!$R3 574
5 TraesCS2A01G004700 chr6D 212501231 212502209 978 False 426.500000 433 84.1190 1062 2582 2 chr6D.!!$F2 1520
6 TraesCS2A01G004700 chr3B 8733405 8734154 749 True 334.000000 357 86.1700 8 745 2 chr3B.!!$R2 737
7 TraesCS2A01G004700 chr3D 7129801 7130540 739 True 352.500000 368 86.8910 8 745 2 chr3D.!!$R1 737
8 TraesCS2A01G004700 chr3A 13154989 13155734 745 False 333.500000 364 86.2175 5 745 2 chr3A.!!$F1 740

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
895 1044 0.240945 GCCCACCAACGATTCTGTTG 59.759 55.000 11.79 11.79 46.86 3.33 F
1675 1849 0.179225 CGATTCCGTCGGCTTTGTTG 60.179 55.000 6.34 0.00 46.47 3.33 F
1870 2059 0.250467 TGTCCTGTTTGAGAGCTGCC 60.250 55.000 0.00 0.00 0.00 4.85 F
2783 3278 1.138859 GGAAGCTTTTGGGCAAGTGTT 59.861 47.619 0.00 0.00 34.17 3.32 F
3717 4218 0.327259 ATCACAGGCTCACAGCACAT 59.673 50.000 0.00 0.00 44.75 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 2009 0.111061 TGGCAGCAAATGTGGACTCT 59.889 50.0 0.0 0.00 0.00 3.24 R
2895 3396 1.267121 GGAGGGAGCACTACACTTCA 58.733 55.0 0.0 0.00 0.00 3.02 R
3684 4185 2.170397 CCTGTGATGGTGGTAGCATACA 59.830 50.0 0.0 0.97 45.43 2.29 R
4701 5213 0.036732 ATCATCACGGTTGCCACTGT 59.963 50.0 0.0 0.00 43.98 3.55 R
5688 6679 0.604780 ATGCCGCTATCCACATCTGC 60.605 55.0 0.0 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 127 7.222417 CGCACAATGCCAAAATCTCATTAAATA 59.778 33.333 0.00 0.00 41.12 1.40
160 164 5.163163 ACAGATAAATATCCTGCTCAGCCAA 60.163 40.000 0.00 0.00 33.17 4.52
205 209 1.207089 TCGAATCCTCACCGCTTCATT 59.793 47.619 0.00 0.00 0.00 2.57
537 607 4.182433 TCCTGCGCCAACCACACA 62.182 61.111 4.18 0.00 0.00 3.72
538 608 3.964875 CCTGCGCCAACCACACAC 61.965 66.667 4.18 0.00 0.00 3.82
539 609 3.208383 CTGCGCCAACCACACACA 61.208 61.111 4.18 0.00 0.00 3.72
540 610 2.751837 TGCGCCAACCACACACAA 60.752 55.556 4.18 0.00 0.00 3.33
541 611 2.278531 GCGCCAACCACACACAAC 60.279 61.111 0.00 0.00 0.00 3.32
542 612 3.057547 GCGCCAACCACACACAACA 62.058 57.895 0.00 0.00 0.00 3.33
543 613 1.732917 CGCCAACCACACACAACAT 59.267 52.632 0.00 0.00 0.00 2.71
544 614 0.317770 CGCCAACCACACACAACATC 60.318 55.000 0.00 0.00 0.00 3.06
545 615 0.743688 GCCAACCACACACAACATCA 59.256 50.000 0.00 0.00 0.00 3.07
546 616 1.269206 GCCAACCACACACAACATCAG 60.269 52.381 0.00 0.00 0.00 2.90
548 618 2.291465 CCAACCACACACAACATCAGAG 59.709 50.000 0.00 0.00 0.00 3.35
627 728 1.166973 TAAGGGAAGGGGAGGGGAGT 61.167 60.000 0.00 0.00 0.00 3.85
763 885 1.671054 CCATTGGTGTCGCCGAGTT 60.671 57.895 0.00 0.00 41.21 3.01
819 951 2.036571 GGGCCGGGTCGTTAACAAG 61.037 63.158 2.18 0.00 0.00 3.16
832 969 2.296073 TAACAAGCCGGACCCAATTT 57.704 45.000 5.05 0.00 0.00 1.82
836 973 0.966179 AAGCCGGACCCAATTTCAAC 59.034 50.000 5.05 0.00 0.00 3.18
842 979 2.754472 GGACCCAATTTCAACACAAGC 58.246 47.619 0.00 0.00 0.00 4.01
861 1010 3.414193 TGGGCTGGGCATCAGGAG 61.414 66.667 8.13 0.00 43.54 3.69
864 1013 2.044650 GCTGGGCATCAGGAGCAA 60.045 61.111 8.13 0.00 43.54 3.91
868 1017 0.627451 TGGGCATCAGGAGCAATTCT 59.373 50.000 0.00 0.00 0.00 2.40
892 1041 2.046285 GGGCCCACCAACGATTCTG 61.046 63.158 19.95 0.00 39.85 3.02
893 1042 1.303317 GGCCCACCAACGATTCTGT 60.303 57.895 0.00 0.00 35.26 3.41
895 1044 0.240945 GCCCACCAACGATTCTGTTG 59.759 55.000 11.79 11.79 46.86 3.33
896 1045 1.604604 CCCACCAACGATTCTGTTGT 58.395 50.000 15.29 6.01 46.08 3.32
897 1046 2.773487 CCCACCAACGATTCTGTTGTA 58.227 47.619 15.29 0.00 46.08 2.41
898 1047 2.742053 CCCACCAACGATTCTGTTGTAG 59.258 50.000 15.29 9.79 46.08 2.74
899 1048 2.159627 CCACCAACGATTCTGTTGTAGC 59.840 50.000 15.29 0.00 46.08 3.58
911 1060 5.818678 TCTGTTGTAGCTAGAAGGGAAAA 57.181 39.130 3.08 0.00 0.00 2.29
912 1061 6.182507 TCTGTTGTAGCTAGAAGGGAAAAA 57.817 37.500 3.08 0.00 0.00 1.94
913 1062 6.231211 TCTGTTGTAGCTAGAAGGGAAAAAG 58.769 40.000 3.08 0.00 0.00 2.27
914 1063 5.313712 TGTTGTAGCTAGAAGGGAAAAAGG 58.686 41.667 3.08 0.00 0.00 3.11
915 1064 4.569719 TGTAGCTAGAAGGGAAAAAGGG 57.430 45.455 0.00 0.00 0.00 3.95
916 1065 2.516227 AGCTAGAAGGGAAAAAGGGC 57.484 50.000 0.00 0.00 0.00 5.19
922 1071 0.771755 AAGGGAAAAAGGGCGAGAGT 59.228 50.000 0.00 0.00 0.00 3.24
923 1072 1.652947 AGGGAAAAAGGGCGAGAGTA 58.347 50.000 0.00 0.00 0.00 2.59
942 1091 0.820871 AGAGAGAGCCCATCGTCAAC 59.179 55.000 0.00 0.00 0.00 3.18
949 1098 1.384222 GCCCATCGTCAACCCCAATC 61.384 60.000 0.00 0.00 0.00 2.67
997 1148 2.450345 CGGCGAAAACCCTAGCGAC 61.450 63.158 0.00 0.00 0.00 5.19
1405 1576 2.368548 TGCTCTCACCTGCTTCTTTACA 59.631 45.455 0.00 0.00 0.00 2.41
1412 1583 5.077564 TCACCTGCTTCTTTACACTCTCTA 58.922 41.667 0.00 0.00 0.00 2.43
1413 1584 5.047943 TCACCTGCTTCTTTACACTCTCTAC 60.048 44.000 0.00 0.00 0.00 2.59
1433 1604 7.014711 TCTCTACAGATTCAGTTCAGTTCAGTT 59.985 37.037 0.00 0.00 0.00 3.16
1434 1605 7.148641 TCTACAGATTCAGTTCAGTTCAGTTC 58.851 38.462 0.00 0.00 0.00 3.01
1435 1606 5.674525 ACAGATTCAGTTCAGTTCAGTTCA 58.325 37.500 0.00 0.00 0.00 3.18
1437 1608 5.757320 CAGATTCAGTTCAGTTCAGTTCAGT 59.243 40.000 0.00 0.00 0.00 3.41
1438 1609 5.988561 AGATTCAGTTCAGTTCAGTTCAGTC 59.011 40.000 0.00 0.00 0.00 3.51
1440 1611 5.282055 TCAGTTCAGTTCAGTTCAGTCAT 57.718 39.130 0.00 0.00 0.00 3.06
1441 1612 5.292765 TCAGTTCAGTTCAGTTCAGTCATC 58.707 41.667 0.00 0.00 0.00 2.92
1442 1613 5.069648 TCAGTTCAGTTCAGTTCAGTCATCT 59.930 40.000 0.00 0.00 0.00 2.90
1443 1614 5.177142 CAGTTCAGTTCAGTTCAGTCATCTG 59.823 44.000 0.00 0.00 42.54 2.90
1444 1615 4.944619 TCAGTTCAGTTCAGTCATCTGT 57.055 40.909 0.00 0.00 41.91 3.41
1445 1616 6.040955 AGTTCAGTTCAGTTCAGTCATCTGTA 59.959 38.462 0.00 0.00 41.91 2.74
1446 1617 6.018589 TCAGTTCAGTTCAGTCATCTGTAG 57.981 41.667 0.00 0.00 41.91 2.74
1447 1618 5.770162 TCAGTTCAGTTCAGTCATCTGTAGA 59.230 40.000 0.00 0.00 41.91 2.59
1448 1619 6.072230 TCAGTTCAGTTCAGTCATCTGTAGAG 60.072 42.308 0.00 0.00 41.91 2.43
1449 1620 6.007076 AGTTCAGTTCAGTCATCTGTAGAGA 58.993 40.000 0.00 0.00 41.91 3.10
1450 1621 6.150976 AGTTCAGTTCAGTCATCTGTAGAGAG 59.849 42.308 0.00 0.00 41.91 3.20
1451 1622 4.946772 TCAGTTCAGTCATCTGTAGAGAGG 59.053 45.833 0.00 0.00 41.91 3.69
1452 1623 4.097741 CAGTTCAGTCATCTGTAGAGAGGG 59.902 50.000 1.36 0.00 41.91 4.30
1453 1624 4.020543 GTTCAGTCATCTGTAGAGAGGGT 58.979 47.826 1.36 0.00 41.91 4.34
1454 1625 5.044772 AGTTCAGTCATCTGTAGAGAGGGTA 60.045 44.000 1.36 0.00 41.91 3.69
1455 1626 5.452341 TCAGTCATCTGTAGAGAGGGTAA 57.548 43.478 1.36 0.00 41.91 2.85
1456 1627 5.827756 TCAGTCATCTGTAGAGAGGGTAAA 58.172 41.667 1.36 0.00 41.91 2.01
1457 1628 5.888724 TCAGTCATCTGTAGAGAGGGTAAAG 59.111 44.000 1.36 0.00 41.91 1.85
1458 1629 5.888724 CAGTCATCTGTAGAGAGGGTAAAGA 59.111 44.000 1.36 0.00 36.97 2.52
1459 1630 6.378564 CAGTCATCTGTAGAGAGGGTAAAGAA 59.621 42.308 1.36 0.00 36.97 2.52
1460 1631 6.605594 AGTCATCTGTAGAGAGGGTAAAGAAG 59.394 42.308 1.36 0.00 30.58 2.85
1461 1632 5.894393 TCATCTGTAGAGAGGGTAAAGAAGG 59.106 44.000 1.36 0.00 30.58 3.46
1462 1633 5.531753 TCTGTAGAGAGGGTAAAGAAGGA 57.468 43.478 0.00 0.00 0.00 3.36
1463 1634 5.900437 TCTGTAGAGAGGGTAAAGAAGGAA 58.100 41.667 0.00 0.00 0.00 3.36
1464 1635 5.952947 TCTGTAGAGAGGGTAAAGAAGGAAG 59.047 44.000 0.00 0.00 0.00 3.46
1465 1636 4.466726 TGTAGAGAGGGTAAAGAAGGAAGC 59.533 45.833 0.00 0.00 0.00 3.86
1466 1637 3.521727 AGAGAGGGTAAAGAAGGAAGCA 58.478 45.455 0.00 0.00 0.00 3.91
1467 1638 3.517500 AGAGAGGGTAAAGAAGGAAGCAG 59.482 47.826 0.00 0.00 0.00 4.24
1468 1639 2.573915 AGAGGGTAAAGAAGGAAGCAGG 59.426 50.000 0.00 0.00 0.00 4.85
1469 1640 2.306219 GAGGGTAAAGAAGGAAGCAGGT 59.694 50.000 0.00 0.00 0.00 4.00
1470 1641 2.716969 AGGGTAAAGAAGGAAGCAGGTT 59.283 45.455 0.00 0.00 0.00 3.50
1471 1642 3.914435 AGGGTAAAGAAGGAAGCAGGTTA 59.086 43.478 0.00 0.00 0.00 2.85
1472 1643 4.019231 AGGGTAAAGAAGGAAGCAGGTTAG 60.019 45.833 0.00 0.00 0.00 2.34
1473 1644 4.263374 GGGTAAAGAAGGAAGCAGGTTAGT 60.263 45.833 0.00 0.00 0.00 2.24
1474 1645 5.314529 GGTAAAGAAGGAAGCAGGTTAGTT 58.685 41.667 0.00 0.00 0.00 2.24
1486 1657 4.086706 CAGGTTAGTTCCTGTGGTTCTT 57.913 45.455 4.75 0.00 46.92 2.52
1488 1659 4.275936 CAGGTTAGTTCCTGTGGTTCTTTG 59.724 45.833 4.75 0.00 46.92 2.77
1489 1660 3.004419 GGTTAGTTCCTGTGGTTCTTTGC 59.996 47.826 0.00 0.00 0.00 3.68
1496 1667 3.135712 TCCTGTGGTTCTTTGCTCTGTTA 59.864 43.478 0.00 0.00 0.00 2.41
1516 1687 6.115446 TGTTATCAGTCATCATCCTTGGTTC 58.885 40.000 0.00 0.00 0.00 3.62
1520 1691 5.634118 TCAGTCATCATCCTTGGTTCTTTT 58.366 37.500 0.00 0.00 0.00 2.27
1532 1703 2.624838 TGGTTCTTTTAGACTCCGTCGT 59.375 45.455 0.00 0.00 37.67 4.34
1567 1738 6.276832 AGCTCATCGGTTAGTTGTTAGTTA 57.723 37.500 0.00 0.00 0.00 2.24
1568 1739 6.875076 AGCTCATCGGTTAGTTGTTAGTTAT 58.125 36.000 0.00 0.00 0.00 1.89
1570 1741 8.136165 AGCTCATCGGTTAGTTGTTAGTTATAG 58.864 37.037 0.00 0.00 0.00 1.31
1571 1742 8.133627 GCTCATCGGTTAGTTGTTAGTTATAGA 58.866 37.037 0.00 0.00 0.00 1.98
1604 1778 6.911250 TGGTAGAATCAGTAACTGAAGACA 57.089 37.500 0.00 0.00 44.04 3.41
1615 1789 8.297290 CAGTAACTGAAGACATAGCAGAGGCT 62.297 46.154 0.00 0.00 43.34 4.58
1631 1805 2.433145 CTGCTGTCGATGCCGTGT 60.433 61.111 10.18 0.00 37.05 4.49
1645 1819 4.314440 GTGTCTGCAGGCCCGACA 62.314 66.667 17.28 8.84 35.49 4.35
1653 1827 4.722700 AGGCCCGACAGCGCAAAT 62.723 61.111 11.47 0.00 35.83 2.32
1654 1828 4.481112 GGCCCGACAGCGCAAATG 62.481 66.667 11.47 0.75 35.83 2.32
1655 1829 3.737172 GCCCGACAGCGCAAATGT 61.737 61.111 11.47 5.03 35.83 2.71
1660 1834 3.975992 GACAGCGCAAATGTCGATT 57.024 47.368 11.47 0.00 37.88 3.34
1661 1835 1.802839 GACAGCGCAAATGTCGATTC 58.197 50.000 11.47 0.00 37.88 2.52
1663 1837 0.587242 CAGCGCAAATGTCGATTCCG 60.587 55.000 11.47 0.00 37.07 4.30
1665 1839 0.586502 GCGCAAATGTCGATTCCGTC 60.587 55.000 0.30 0.00 37.05 4.79
1675 1849 0.179225 CGATTCCGTCGGCTTTGTTG 60.179 55.000 6.34 0.00 46.47 3.33
1767 1954 2.017049 GACACATTTAGGCGAGCCAAT 58.983 47.619 17.18 5.41 38.92 3.16
1769 1956 2.016318 CACATTTAGGCGAGCCAATCA 58.984 47.619 17.18 0.00 38.92 2.57
1795 1983 4.610333 AGAGTTTTGGGTTTGGAGAAAGT 58.390 39.130 0.00 0.00 0.00 2.66
1796 1984 5.023452 AGAGTTTTGGGTTTGGAGAAAGTT 58.977 37.500 0.00 0.00 0.00 2.66
1820 2009 6.519382 TGGTTGTCATTTGTCAATGCAATAA 58.481 32.000 0.00 0.00 39.90 1.40
1821 2010 6.645827 TGGTTGTCATTTGTCAATGCAATAAG 59.354 34.615 0.00 0.00 39.90 1.73
1838 2027 1.251251 AAGAGTCCACATTTGCTGCC 58.749 50.000 0.00 0.00 0.00 4.85
1844 2033 2.954318 GTCCACATTTGCTGCCATAGAT 59.046 45.455 0.00 0.00 0.00 1.98
1846 2035 2.691526 CCACATTTGCTGCCATAGATGT 59.308 45.455 0.00 0.00 0.00 3.06
1870 2059 0.250467 TGTCCTGTTTGAGAGCTGCC 60.250 55.000 0.00 0.00 0.00 4.85
1953 2142 2.533266 TGGACTTCAGCTTCAGTCAC 57.467 50.000 19.34 11.59 41.19 3.67
1967 2162 2.698274 TCAGTCACTGAACCTGCTGTAA 59.302 45.455 4.55 0.00 37.57 2.41
1984 2179 4.506288 GCTGTAATTTTGTGTTGGTCAACC 59.494 41.667 10.83 0.00 40.46 3.77
1985 2180 5.655488 CTGTAATTTTGTGTTGGTCAACCA 58.345 37.500 10.83 0.00 45.94 3.67
1986 2181 6.227298 TGTAATTTTGTGTTGGTCAACCAT 57.773 33.333 10.83 0.00 46.97 3.55
2032 2227 4.875536 TCCATCGTCATTGTATTCCAACTG 59.124 41.667 0.00 0.00 35.44 3.16
2051 2248 8.575649 CCAACTGATGGGTTAGTAATTAGTTT 57.424 34.615 0.00 0.00 46.27 2.66
2157 2356 6.185399 CGTAATGTCGATTCATCTGGTTTTC 58.815 40.000 0.00 0.00 0.00 2.29
2207 2406 1.698506 TGGTTGTGGTTTCCATGGAC 58.301 50.000 15.91 4.17 35.28 4.02
2480 2685 1.528824 CTACCACCATCCCAGCAGG 59.471 63.158 0.00 0.00 0.00 4.85
2587 2792 2.829120 GAGCATATCTGGTACTCCCTCC 59.171 54.545 0.00 0.00 31.99 4.30
2589 2794 2.171840 CATATCTGGTACTCCCTCCGG 58.828 57.143 0.00 0.00 0.00 5.14
2594 2799 1.305549 GGTACTCCCTCCGGTCCAA 60.306 63.158 0.00 0.00 0.00 3.53
2604 2809 3.007635 CCTCCGGTCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2605 2810 3.558321 CCTCCGGTCCAAAATAAGTGTCA 60.558 47.826 0.00 0.00 0.00 3.58
2680 3175 3.864540 GCTGCATGACCTACGGCATAATA 60.865 47.826 0.00 0.00 35.45 0.98
2746 3241 3.129287 CCCATAGCTGTGGTTTTGCTAAG 59.871 47.826 25.91 5.58 41.71 2.18
2783 3278 1.138859 GGAAGCTTTTGGGCAAGTGTT 59.861 47.619 0.00 0.00 34.17 3.32
2794 3289 2.687935 GGGCAAGTGTTGAGAGTTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
2796 3291 3.627577 GGCAAGTGTTGAGAGTTTTGAGA 59.372 43.478 0.00 0.00 0.00 3.27
2800 3301 6.586082 GCAAGTGTTGAGAGTTTTGAGAAAAA 59.414 34.615 0.00 0.00 31.13 1.94
2832 3333 6.424812 TCATTCATCAATGCAATAGTAGTCCG 59.575 38.462 0.00 0.00 39.56 4.79
2895 3396 9.880157 CAATTTGACATTTTCAATCCTAGGATT 57.120 29.630 28.25 28.25 43.99 3.01
3139 3640 1.906966 CAAATCATGCACGAAAGCGAC 59.093 47.619 0.00 0.00 41.64 5.19
3311 3812 2.091610 TCAATCACCAAACCTGGAACCA 60.092 45.455 0.00 0.00 46.92 3.67
3322 3823 2.777692 ACCTGGAACCAGACAGAAGAAA 59.222 45.455 20.79 0.00 46.30 2.52
3449 3950 5.249780 TGCTATTGGAACTTGGGACTTAA 57.750 39.130 0.00 0.00 0.00 1.85
3528 4029 1.679139 TGAGTGCACTTGGACTTTGG 58.321 50.000 22.65 0.00 46.89 3.28
3684 4185 7.141758 TCCTTTAATGCTCTGAAGGACATAT 57.858 36.000 7.49 0.00 41.91 1.78
3717 4218 0.327259 ATCACAGGCTCACAGCACAT 59.673 50.000 0.00 0.00 44.75 3.21
3719 4220 1.066645 TCACAGGCTCACAGCACATAG 60.067 52.381 0.00 0.00 44.75 2.23
3783 4285 2.744202 CTGCAGTAGTTTTCTCGCCAAT 59.256 45.455 5.25 0.00 0.00 3.16
3886 4388 7.656137 TGTTCTAAACTTAGGCTACAGTTTCAG 59.344 37.037 24.73 20.73 41.37 3.02
3928 4430 7.979115 TCTTCCAAAGACGTTTTACAATTTG 57.021 32.000 0.00 0.00 31.20 2.32
3973 4475 6.801862 GCACCTCAACAATACATTACTTTGTC 59.198 38.462 0.00 0.00 32.66 3.18
3996 4498 2.164624 CGATGCAGGTATACTAGAGCCC 59.835 54.545 2.25 0.00 0.00 5.19
4005 4507 5.248705 AGGTATACTAGAGCCCATAAAAGCC 59.751 44.000 2.25 0.00 0.00 4.35
4234 4736 1.112113 ACCGCTATCTGATTGTCGGT 58.888 50.000 23.11 23.11 44.32 4.69
4443 4946 6.346912 AAGACATTCTTTTGCAGCCTCTGC 62.347 45.833 11.54 11.54 44.92 4.26
4598 5109 5.460419 TGTTTTGATTTTTGTGCCATACGTC 59.540 36.000 0.00 0.00 0.00 4.34
4634 5145 4.123745 ACCTTATGTATCCTTTTCCCCCA 58.876 43.478 0.00 0.00 0.00 4.96
4697 5209 4.525487 AGGAAATGAAAGAGATGCAAAGCA 59.475 37.500 0.00 0.00 44.86 3.91
4835 5348 4.984161 CACGATGAATGCTTGTTTTTCCTT 59.016 37.500 0.00 0.00 0.00 3.36
4851 5364 7.603404 TGTTTTTCCTTAGGAATGCATTGAATG 59.397 33.333 18.59 0.00 41.71 2.67
4875 5389 7.032580 TGTGTGTTGAACTTGTAATTTCCTTG 58.967 34.615 0.00 0.00 0.00 3.61
4931 5445 3.814283 AGCAGAAAGAGAAGCAAGAACAG 59.186 43.478 0.00 0.00 0.00 3.16
4972 5486 0.875059 GCTACGCCAAAGAACTTGCT 59.125 50.000 0.00 0.00 33.27 3.91
5079 5593 3.194329 TCAACACCACATTTTGTTCAGCA 59.806 39.130 0.00 0.00 33.59 4.41
5102 5620 7.510685 AGCAGATATGACTATGGAAGTAAAGGA 59.489 37.037 0.00 0.00 39.07 3.36
5129 5647 3.076621 TGCTTGCATTCTGGTAACTCTG 58.923 45.455 0.00 0.00 37.61 3.35
5135 5653 4.202357 TGCATTCTGGTAACTCTGAACTGT 60.202 41.667 0.00 0.00 37.61 3.55
5144 5662 1.415659 ACTCTGAACTGTGCTTGAGCT 59.584 47.619 4.44 0.00 42.66 4.09
5168 5687 2.346766 TGCTCCTGCTTCAGAAACAA 57.653 45.000 0.00 0.00 40.48 2.83
5202 5729 4.700213 ACAGAATCCCAAAAGAATACCACG 59.300 41.667 0.00 0.00 0.00 4.94
5247 5774 4.525686 GCGCTTTTGAAATTTCATGCAAA 58.474 34.783 26.16 20.43 37.00 3.68
5282 5809 3.181497 TGTGCTGTGCAAAGAAAAGAGAC 60.181 43.478 8.49 0.00 41.47 3.36
5341 5868 2.092968 TGTCTTCTTTGTGCAGACCACT 60.093 45.455 0.00 0.00 44.92 4.00
5348 5875 4.756642 TCTTTGTGCAGACCACTAATGAAG 59.243 41.667 0.00 0.00 44.92 3.02
5573 6564 0.879400 CAGCGATGAGGAGGCATGAC 60.879 60.000 0.00 0.00 0.00 3.06
5585 6576 1.607801 GGCATGACCTTCCTTTGCCC 61.608 60.000 0.00 0.00 45.63 5.36
5589 6580 0.110486 TGACCTTCCTTTGCCCTCAC 59.890 55.000 0.00 0.00 0.00 3.51
5640 6631 2.355108 GCCTTGTCAGCAGATTCCAGTA 60.355 50.000 0.00 0.00 0.00 2.74
5658 6649 4.653341 CCAGTAAGTCATCCCTGAGAAGAT 59.347 45.833 0.00 0.00 30.18 2.40
5662 6653 0.755079 TCATCCCTGAGAAGATGCCG 59.245 55.000 7.35 0.00 39.79 5.69
5687 6678 1.612950 TGTAATGTGCTGCTGGTTTGG 59.387 47.619 0.00 0.00 0.00 3.28
5688 6679 1.067635 GTAATGTGCTGCTGGTTTGGG 60.068 52.381 0.00 0.00 0.00 4.12
5695 6686 1.153524 TGCTGGTTTGGGCAGATGT 59.846 52.632 0.00 0.00 34.22 3.06
5729 6727 0.831288 TGGCCAACCCCATGAACAAG 60.831 55.000 0.61 0.00 33.59 3.16
5810 6812 5.751028 GCAACTCTGTCTGTACTTCCATATC 59.249 44.000 0.00 0.00 0.00 1.63
5811 6813 6.628175 GCAACTCTGTCTGTACTTCCATATCA 60.628 42.308 0.00 0.00 0.00 2.15
5812 6814 6.707440 ACTCTGTCTGTACTTCCATATCAG 57.293 41.667 0.00 0.00 0.00 2.90
5813 6815 6.427441 ACTCTGTCTGTACTTCCATATCAGA 58.573 40.000 0.00 0.00 33.60 3.27
5815 6817 6.427441 TCTGTCTGTACTTCCATATCAGAGT 58.573 40.000 0.00 0.00 36.13 3.24
5817 6819 5.360999 TGTCTGTACTTCCATATCAGAGTGG 59.639 44.000 0.00 0.00 36.13 4.00
5818 6820 5.361285 GTCTGTACTTCCATATCAGAGTGGT 59.639 44.000 0.00 0.00 36.13 4.16
5885 6900 3.137687 CCCTTTGTTGGGGCACAC 58.862 61.111 0.00 0.00 43.45 3.82
5886 6901 2.506957 CCCTTTGTTGGGGCACACC 61.507 63.158 0.00 0.00 43.45 4.16
5887 6902 1.457455 CCTTTGTTGGGGCACACCT 60.457 57.895 0.00 0.00 40.03 4.00
5897 6912 2.243810 GGGGCACACCTTTTGTATCAA 58.756 47.619 0.00 0.00 35.67 2.57
5898 6913 2.831526 GGGGCACACCTTTTGTATCAAT 59.168 45.455 0.00 0.00 35.67 2.57
5899 6914 4.020543 GGGGCACACCTTTTGTATCAATA 58.979 43.478 0.00 0.00 35.67 1.90
5949 6973 0.759812 TCGGTGGGTGGTGAAGTGTA 60.760 55.000 0.00 0.00 0.00 2.90
5955 6979 4.142038 GTGGGTGGTGAAGTGTATTTCTT 58.858 43.478 0.00 0.00 0.00 2.52
5958 6982 5.070685 GGGTGGTGAAGTGTATTTCTTTCT 58.929 41.667 0.00 0.00 0.00 2.52
5960 6984 5.763204 GGTGGTGAAGTGTATTTCTTTCTCA 59.237 40.000 0.00 0.00 0.00 3.27
5961 6985 6.293462 GGTGGTGAAGTGTATTTCTTTCTCAC 60.293 42.308 0.00 0.00 0.00 3.51
5962 6986 6.483640 GTGGTGAAGTGTATTTCTTTCTCACT 59.516 38.462 0.00 0.00 40.40 3.41
6004 7028 2.122768 AGGGAGGGTGATTGATCAGAC 58.877 52.381 0.00 0.00 37.51 3.51
6023 7051 1.202675 ACCAAAGTGCAAATGGCTTGG 60.203 47.619 12.30 9.82 45.84 3.61
6040 7068 1.379044 GGTGTTGATGGAGCCCCTG 60.379 63.158 0.00 0.00 0.00 4.45
6041 7069 1.379044 GTGTTGATGGAGCCCCTGG 60.379 63.158 0.00 0.00 0.00 4.45
6042 7070 2.276740 GTTGATGGAGCCCCTGGG 59.723 66.667 5.50 5.50 38.57 4.45
6043 7071 2.127065 TTGATGGAGCCCCTGGGA 59.873 61.111 16.20 0.00 37.50 4.37
6044 7072 2.002977 TTGATGGAGCCCCTGGGAG 61.003 63.158 16.20 5.50 37.50 4.30
6045 7073 2.040464 GATGGAGCCCCTGGGAGA 60.040 66.667 16.20 0.00 37.50 3.71
6075 7111 1.771255 AGTTGGCTTGACCTGTCTCTT 59.229 47.619 0.00 0.00 40.22 2.85
6081 7119 0.687354 TTGACCTGTCTCTTGGAGCC 59.313 55.000 0.00 0.00 0.00 4.70
6112 7150 3.598019 ATGGTGAACATGGTTGCATTC 57.402 42.857 0.00 0.00 38.70 2.67
6113 7151 2.314246 TGGTGAACATGGTTGCATTCA 58.686 42.857 0.00 0.00 0.00 2.57
6114 7152 2.898612 TGGTGAACATGGTTGCATTCAT 59.101 40.909 0.00 0.00 33.85 2.57
6115 7153 3.255725 GGTGAACATGGTTGCATTCATG 58.744 45.455 21.08 21.08 44.42 3.07
6186 7226 4.398988 TGCATACATGTGGATCACCTTTTC 59.601 41.667 9.11 0.00 37.04 2.29
6234 7288 2.895865 CAGATCTGCAGCAGGGCG 60.896 66.667 22.62 5.20 36.28 6.13
6283 7346 4.148128 AGGAACACTGATGATGATGGTC 57.852 45.455 0.00 0.00 0.00 4.02
6284 7347 3.520721 AGGAACACTGATGATGATGGTCA 59.479 43.478 0.00 0.00 29.97 4.02
6285 7348 4.165565 AGGAACACTGATGATGATGGTCAT 59.834 41.667 0.00 0.00 40.34 3.06
6305 7369 3.431673 TCCATCAGGCACACATAACAA 57.568 42.857 0.00 0.00 33.74 2.83
6306 7370 3.760738 TCCATCAGGCACACATAACAAA 58.239 40.909 0.00 0.00 33.74 2.83
6314 7378 4.462132 AGGCACACATAACAAACATGCATA 59.538 37.500 0.00 0.00 33.24 3.14
6328 7392 2.440517 TGCATACATCAGCACCCATT 57.559 45.000 0.00 0.00 35.51 3.16
6329 7393 2.025898 TGCATACATCAGCACCCATTG 58.974 47.619 0.00 0.00 35.51 2.82
6330 7394 2.026641 GCATACATCAGCACCCATTGT 58.973 47.619 0.00 0.00 0.00 2.71
6332 7396 3.735820 GCATACATCAGCACCCATTGTTG 60.736 47.826 0.00 0.00 37.77 3.33
6380 7452 5.567037 TTTTGTTCATCTTCTCCCTCTGA 57.433 39.130 0.00 0.00 0.00 3.27
6460 7556 4.320788 GCCTCATGTTTCACTTTCTTCCTG 60.321 45.833 0.00 0.00 0.00 3.86
6476 7572 2.033141 TGCTCTGCTGTGGCCTTC 59.967 61.111 3.32 0.00 37.74 3.46
6521 7621 3.290567 TGCATTGCATGGTCCAGC 58.709 55.556 7.38 2.01 31.71 4.85
6522 7622 1.606889 TGCATTGCATGGTCCAGCA 60.607 52.632 7.38 10.78 39.32 4.41
6523 7623 0.973496 TGCATTGCATGGTCCAGCAT 60.973 50.000 7.38 0.00 40.94 3.79
6524 7624 0.177141 GCATTGCATGGTCCAGCATT 59.823 50.000 14.33 9.66 40.94 3.56
6525 7625 1.934589 CATTGCATGGTCCAGCATTG 58.065 50.000 14.33 15.64 40.94 2.82
6526 7626 0.177141 ATTGCATGGTCCAGCATTGC 59.823 50.000 14.33 11.44 40.94 3.56
6541 7645 2.390306 ATTGCCGGTTGGGGTTTTGC 62.390 55.000 1.90 0.00 35.78 3.68
6551 7655 1.832167 GGGTTTTGCTGTGAGGGCA 60.832 57.895 0.00 0.00 37.97 5.36
6553 7657 0.681175 GGTTTTGCTGTGAGGGCATT 59.319 50.000 0.00 0.00 39.54 3.56
6562 7666 0.458669 GTGAGGGCATTTGCATGGAG 59.541 55.000 4.74 0.00 44.36 3.86
6568 7672 1.340248 GGCATTTGCATGGAGATGGAG 59.660 52.381 17.60 0.00 44.36 3.86
6569 7673 1.269621 GCATTTGCATGGAGATGGAGC 60.270 52.381 17.60 1.90 41.59 4.70
6570 7674 1.340248 CATTTGCATGGAGATGGAGCC 59.660 52.381 9.58 0.00 30.64 4.70
6571 7675 0.627451 TTTGCATGGAGATGGAGCCT 59.373 50.000 0.00 0.00 30.64 4.58
6572 7676 0.627451 TTGCATGGAGATGGAGCCTT 59.373 50.000 0.00 0.00 30.64 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 2.141535 TGGCATTGTGCGGTTTTAAC 57.858 45.000 0.00 0.00 46.21 2.01
124 127 8.986991 AGGATATTTATCTGTCTGTTCTCTGTT 58.013 33.333 0.00 0.00 33.28 3.16
177 181 0.739813 GTGAGGATTCGACCAACCGG 60.740 60.000 0.00 0.00 38.77 5.28
181 185 1.079405 GCGGTGAGGATTCGACCAA 60.079 57.895 0.00 0.00 0.00 3.67
182 186 1.541310 AAGCGGTGAGGATTCGACCA 61.541 55.000 0.00 0.00 0.00 4.02
269 273 2.217038 AGGCGCAGGAAGAGACCAA 61.217 57.895 10.83 0.00 0.00 3.67
320 324 3.018856 GGTTGATTGGTGCAGATGATGA 58.981 45.455 0.00 0.00 0.00 2.92
537 607 2.887783 ACGTGTCTCTCTCTGATGTTGT 59.112 45.455 0.00 0.00 0.00 3.32
538 608 3.057946 TGACGTGTCTCTCTCTGATGTTG 60.058 47.826 0.00 0.00 0.00 3.33
539 609 3.149981 TGACGTGTCTCTCTCTGATGTT 58.850 45.455 0.00 0.00 0.00 2.71
540 610 2.746904 CTGACGTGTCTCTCTCTGATGT 59.253 50.000 0.00 0.00 0.00 3.06
541 611 2.477694 GCTGACGTGTCTCTCTCTGATG 60.478 54.545 0.00 0.00 0.00 3.07
542 612 1.742831 GCTGACGTGTCTCTCTCTGAT 59.257 52.381 0.00 0.00 0.00 2.90
543 613 1.160989 GCTGACGTGTCTCTCTCTGA 58.839 55.000 0.00 0.00 0.00 3.27
544 614 0.179202 CGCTGACGTGTCTCTCTCTG 60.179 60.000 0.00 0.00 33.53 3.35
545 615 1.917782 GCGCTGACGTGTCTCTCTCT 61.918 60.000 0.00 0.00 42.83 3.10
546 616 1.513160 GCGCTGACGTGTCTCTCTC 60.513 63.158 0.00 0.00 42.83 3.20
548 618 2.872001 CGCGCTGACGTGTCTCTC 60.872 66.667 5.56 0.00 44.66 3.20
614 705 1.305887 CGTACACTCCCCTCCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
778 900 3.473625 CGTGTTAAACCCTCCTCTTGTT 58.526 45.455 0.00 0.00 0.00 2.83
781 903 1.607251 CGCGTGTTAAACCCTCCTCTT 60.607 52.381 0.00 0.00 0.00 2.85
819 951 0.038618 GTGTTGAAATTGGGTCCGGC 60.039 55.000 0.00 0.00 0.00 6.13
842 979 4.517934 CCTGATGCCCAGCCCAGG 62.518 72.222 9.67 9.67 41.57 4.45
892 1041 4.700692 CCCTTTTTCCCTTCTAGCTACAAC 59.299 45.833 0.00 0.00 0.00 3.32
893 1042 4.809691 GCCCTTTTTCCCTTCTAGCTACAA 60.810 45.833 0.00 0.00 0.00 2.41
895 1044 3.280295 GCCCTTTTTCCCTTCTAGCTAC 58.720 50.000 0.00 0.00 0.00 3.58
896 1045 2.093128 CGCCCTTTTTCCCTTCTAGCTA 60.093 50.000 0.00 0.00 0.00 3.32
897 1046 1.340114 CGCCCTTTTTCCCTTCTAGCT 60.340 52.381 0.00 0.00 0.00 3.32
898 1047 1.095600 CGCCCTTTTTCCCTTCTAGC 58.904 55.000 0.00 0.00 0.00 3.42
899 1048 2.236395 TCTCGCCCTTTTTCCCTTCTAG 59.764 50.000 0.00 0.00 0.00 2.43
911 1060 1.749286 GCTCTCTCTACTCTCGCCCTT 60.749 57.143 0.00 0.00 0.00 3.95
912 1061 0.179029 GCTCTCTCTACTCTCGCCCT 60.179 60.000 0.00 0.00 0.00 5.19
913 1062 1.170290 GGCTCTCTCTACTCTCGCCC 61.170 65.000 0.00 0.00 0.00 6.13
914 1063 1.170290 GGGCTCTCTCTACTCTCGCC 61.170 65.000 0.00 0.00 35.41 5.54
915 1064 0.464735 TGGGCTCTCTCTACTCTCGC 60.465 60.000 0.00 0.00 0.00 5.03
916 1065 2.151202 GATGGGCTCTCTCTACTCTCG 58.849 57.143 0.00 0.00 0.00 4.04
922 1071 2.025155 GTTGACGATGGGCTCTCTCTA 58.975 52.381 0.00 0.00 0.00 2.43
923 1072 0.820871 GTTGACGATGGGCTCTCTCT 59.179 55.000 0.00 0.00 0.00 3.10
942 1091 4.074408 GGGTGTGGGGGATTGGGG 62.074 72.222 0.00 0.00 0.00 4.96
997 1148 0.896940 AGCAAAGCACTCACCATGGG 60.897 55.000 18.09 5.22 0.00 4.00
1136 1287 3.787001 CCCGCCTCCTTCCCAGAC 61.787 72.222 0.00 0.00 0.00 3.51
1372 1526 2.354604 GGTGAGAGCAGAGGAAAGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
1376 1544 1.675415 GCAGGTGAGAGCAGAGGAAAG 60.675 57.143 0.00 0.00 0.00 2.62
1405 1576 6.491745 TGAACTGAACTGAATCTGTAGAGAGT 59.508 38.462 0.00 0.00 32.08 3.24
1412 1583 5.674525 TGAACTGAACTGAACTGAATCTGT 58.325 37.500 0.00 0.00 33.52 3.41
1413 1584 5.757320 ACTGAACTGAACTGAACTGAATCTG 59.243 40.000 0.00 0.00 0.00 2.90
1433 1604 5.452341 TTACCCTCTCTACAGATGACTGA 57.548 43.478 0.00 0.00 46.03 3.41
1435 1606 6.080969 TCTTTACCCTCTCTACAGATGACT 57.919 41.667 0.00 0.00 0.00 3.41
1437 1608 5.894393 CCTTCTTTACCCTCTCTACAGATGA 59.106 44.000 0.00 0.00 0.00 2.92
1438 1609 5.894393 TCCTTCTTTACCCTCTCTACAGATG 59.106 44.000 0.00 0.00 0.00 2.90
1440 1611 5.531753 TCCTTCTTTACCCTCTCTACAGA 57.468 43.478 0.00 0.00 0.00 3.41
1441 1612 5.394773 GCTTCCTTCTTTACCCTCTCTACAG 60.395 48.000 0.00 0.00 0.00 2.74
1442 1613 4.466726 GCTTCCTTCTTTACCCTCTCTACA 59.533 45.833 0.00 0.00 0.00 2.74
1443 1614 4.466726 TGCTTCCTTCTTTACCCTCTCTAC 59.533 45.833 0.00 0.00 0.00 2.59
1444 1615 4.684724 TGCTTCCTTCTTTACCCTCTCTA 58.315 43.478 0.00 0.00 0.00 2.43
1445 1616 3.517500 CTGCTTCCTTCTTTACCCTCTCT 59.482 47.826 0.00 0.00 0.00 3.10
1446 1617 3.369997 CCTGCTTCCTTCTTTACCCTCTC 60.370 52.174 0.00 0.00 0.00 3.20
1447 1618 2.573915 CCTGCTTCCTTCTTTACCCTCT 59.426 50.000 0.00 0.00 0.00 3.69
1448 1619 2.306219 ACCTGCTTCCTTCTTTACCCTC 59.694 50.000 0.00 0.00 0.00 4.30
1449 1620 2.349445 ACCTGCTTCCTTCTTTACCCT 58.651 47.619 0.00 0.00 0.00 4.34
1450 1621 2.881111 ACCTGCTTCCTTCTTTACCC 57.119 50.000 0.00 0.00 0.00 3.69
1451 1622 4.907809 ACTAACCTGCTTCCTTCTTTACC 58.092 43.478 0.00 0.00 0.00 2.85
1452 1623 5.411977 GGAACTAACCTGCTTCCTTCTTTAC 59.588 44.000 0.00 0.00 32.16 2.01
1453 1624 5.309806 AGGAACTAACCTGCTTCCTTCTTTA 59.690 40.000 0.00 0.00 40.87 1.85
1454 1625 4.104897 AGGAACTAACCTGCTTCCTTCTTT 59.895 41.667 0.00 0.00 40.87 2.52
1455 1626 3.653352 AGGAACTAACCTGCTTCCTTCTT 59.347 43.478 0.00 0.00 40.87 2.52
1456 1627 3.252351 AGGAACTAACCTGCTTCCTTCT 58.748 45.455 0.00 0.00 40.87 2.85
1457 1628 3.704800 AGGAACTAACCTGCTTCCTTC 57.295 47.619 0.00 0.00 40.87 3.46
1466 1637 4.461198 CAAAGAACCACAGGAACTAACCT 58.539 43.478 0.00 0.00 41.43 3.50
1467 1638 3.004419 GCAAAGAACCACAGGAACTAACC 59.996 47.826 0.00 0.00 36.02 2.85
1468 1639 3.883489 AGCAAAGAACCACAGGAACTAAC 59.117 43.478 0.00 0.00 36.02 2.34
1469 1640 4.134563 GAGCAAAGAACCACAGGAACTAA 58.865 43.478 0.00 0.00 36.02 2.24
1470 1641 3.391296 AGAGCAAAGAACCACAGGAACTA 59.609 43.478 0.00 0.00 36.02 2.24
1471 1642 2.173569 AGAGCAAAGAACCACAGGAACT 59.826 45.455 0.00 0.00 43.88 3.01
1472 1643 2.291741 CAGAGCAAAGAACCACAGGAAC 59.708 50.000 0.00 0.00 0.00 3.62
1473 1644 2.092429 ACAGAGCAAAGAACCACAGGAA 60.092 45.455 0.00 0.00 0.00 3.36
1474 1645 1.490490 ACAGAGCAAAGAACCACAGGA 59.510 47.619 0.00 0.00 0.00 3.86
1480 1651 4.997395 TGACTGATAACAGAGCAAAGAACC 59.003 41.667 7.05 0.00 46.03 3.62
1486 1657 5.129980 AGGATGATGACTGATAACAGAGCAA 59.870 40.000 7.05 0.00 46.03 3.91
1488 1659 5.212532 AGGATGATGACTGATAACAGAGC 57.787 43.478 7.05 0.00 46.03 4.09
1489 1660 5.990386 CCAAGGATGATGACTGATAACAGAG 59.010 44.000 7.05 0.00 46.03 3.35
1496 1667 5.447778 AAGAACCAAGGATGATGACTGAT 57.552 39.130 0.00 0.00 0.00 2.90
1532 1703 2.194800 GATGAGCTCGAACACGATGA 57.805 50.000 9.64 0.00 35.51 2.92
1545 1716 8.133627 TCTATAACTAACAACTAACCGATGAGC 58.866 37.037 0.00 0.00 0.00 4.26
1586 1757 7.261325 TCTGCTATGTCTTCAGTTACTGATTC 58.739 38.462 16.28 9.81 40.39 2.52
1595 1766 2.977772 GCCTCTGCTATGTCTTCAGT 57.022 50.000 0.00 0.00 33.53 3.41
1615 1789 2.432456 GACACGGCATCGACAGCA 60.432 61.111 13.01 0.00 40.11 4.41
1620 1794 2.125952 CTGCAGACACGGCATCGA 60.126 61.111 8.42 0.00 41.06 3.59
1629 1803 4.007644 CTGTCGGGCCTGCAGACA 62.008 66.667 23.84 20.67 41.90 3.41
1639 1813 2.480555 GACATTTGCGCTGTCGGG 59.519 61.111 9.73 0.00 34.24 5.14
1643 1817 0.447801 GGAATCGACATTTGCGCTGT 59.552 50.000 9.73 4.30 0.00 4.40
1644 1818 0.587242 CGGAATCGACATTTGCGCTG 60.587 55.000 9.73 0.08 39.00 5.18
1645 1819 1.019278 ACGGAATCGACATTTGCGCT 61.019 50.000 9.73 0.00 40.94 5.92
1657 1831 0.168128 CCAACAAAGCCGACGGAATC 59.832 55.000 20.50 0.00 0.00 2.52
1658 1832 1.862602 GCCAACAAAGCCGACGGAAT 61.863 55.000 20.50 1.31 0.00 3.01
1660 1834 2.975799 GCCAACAAAGCCGACGGA 60.976 61.111 20.50 0.00 0.00 4.69
1661 1835 2.978010 AGCCAACAAAGCCGACGG 60.978 61.111 10.29 10.29 0.00 4.79
1663 1837 2.644992 CCAGCCAACAAAGCCGAC 59.355 61.111 0.00 0.00 0.00 4.79
1665 1839 3.297620 AGCCAGCCAACAAAGCCG 61.298 61.111 0.00 0.00 0.00 5.52
1667 1841 2.341176 CCAGCCAGCCAACAAAGC 59.659 61.111 0.00 0.00 0.00 3.51
1668 1842 2.205152 AGCCAGCCAGCCAACAAAG 61.205 57.895 0.00 0.00 0.00 2.77
1672 1846 3.368571 GTCAGCCAGCCAGCCAAC 61.369 66.667 0.00 0.00 0.00 3.77
1692 1866 2.231235 CCAAGGAAACTAACATGGTGGC 59.769 50.000 0.00 0.00 42.68 5.01
1767 1954 3.146066 CCAAACCCAAAACTCTCGATGA 58.854 45.455 0.00 0.00 0.00 2.92
1769 1956 3.072476 TCTCCAAACCCAAAACTCTCGAT 59.928 43.478 0.00 0.00 0.00 3.59
1795 1983 4.397481 TGCATTGACAAATGACAACCAA 57.603 36.364 2.69 0.00 45.17 3.67
1796 1984 4.397481 TTGCATTGACAAATGACAACCA 57.603 36.364 2.69 0.05 45.17 3.67
1820 2009 0.111061 TGGCAGCAAATGTGGACTCT 59.889 50.000 0.00 0.00 0.00 3.24
1821 2010 1.180029 ATGGCAGCAAATGTGGACTC 58.820 50.000 0.00 0.00 0.00 3.36
1838 2027 3.526931 ACAGGACAACCGACATCTATG 57.473 47.619 0.00 0.00 41.83 2.23
1844 2033 1.483004 TCTCAAACAGGACAACCGACA 59.517 47.619 0.00 0.00 41.83 4.35
1846 2035 1.540363 GCTCTCAAACAGGACAACCGA 60.540 52.381 0.00 0.00 41.83 4.69
1870 2059 1.620819 ACAACAGTCAGACTAGGCCAG 59.379 52.381 5.01 2.64 0.00 4.85
1935 2124 2.036475 TCAGTGACTGAAGCTGAAGTCC 59.964 50.000 13.74 14.13 41.79 3.85
1953 2142 5.186996 ACACAAAATTACAGCAGGTTCAG 57.813 39.130 0.00 0.00 0.00 3.02
1984 2179 6.839820 TCTGAAAGAACGATGATGATGATG 57.160 37.500 0.00 0.00 42.31 3.07
2127 2326 2.536365 TGAATCGACATTACGCTGTCC 58.464 47.619 7.53 0.00 42.06 4.02
2146 2345 3.181530 CGTCAGCTAACGAAAACCAGATG 60.182 47.826 2.25 0.00 45.37 2.90
2157 2356 2.813908 GGTGGCCGTCAGCTAACG 60.814 66.667 1.19 1.19 43.05 3.18
2460 2665 2.203070 GCTGGGATGGTGGTAGCG 60.203 66.667 0.00 0.00 0.00 4.26
2480 2685 7.308435 AGAACAAAGCATTAAATCTACAGTGC 58.692 34.615 0.00 0.00 0.00 4.40
2587 2792 3.813166 ACTGTGACACTTATTTTGGACCG 59.187 43.478 7.20 0.00 0.00 4.79
2589 2794 7.254852 TCAAAACTGTGACACTTATTTTGGAC 58.745 34.615 25.38 0.00 37.53 4.02
2604 2809 5.048782 TGCTATGCCTTAGTTCAAAACTGTG 60.049 40.000 2.65 0.00 42.84 3.66
2605 2810 5.070001 TGCTATGCCTTAGTTCAAAACTGT 58.930 37.500 2.65 0.00 42.84 3.55
2698 3193 3.769739 ACATGGTGTCAGTCAGCTAAA 57.230 42.857 0.00 0.00 43.97 1.85
2746 3241 5.298197 GCTTCCCTAGACAAGCTTAAAAC 57.702 43.478 14.99 0.00 41.61 2.43
2783 3278 7.773224 TGATACCACTTTTTCTCAAAACTCTCA 59.227 33.333 0.00 0.00 0.00 3.27
2794 3289 7.977853 GCATTGATGAATGATACCACTTTTTCT 59.022 33.333 9.25 0.00 41.49 2.52
2796 3291 7.613585 TGCATTGATGAATGATACCACTTTTT 58.386 30.769 9.25 0.00 41.49 1.94
2800 3301 6.971726 ATTGCATTGATGAATGATACCACT 57.028 33.333 9.25 0.00 41.49 4.00
2895 3396 1.267121 GGAGGGAGCACTACACTTCA 58.733 55.000 0.00 0.00 0.00 3.02
2906 3407 6.756221 TCTTATATTTCTTTACGGAGGGAGC 58.244 40.000 0.00 0.00 0.00 4.70
2988 3489 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3033 3534 2.309755 ACCACTGGACCAACATGATGAT 59.690 45.455 4.25 0.00 0.00 2.45
3139 3640 3.562779 CTTGCCACCTGCCGCAAAG 62.563 63.158 0.00 0.00 43.94 2.77
3311 3812 5.393866 AGTTCCTCTCTCTTTCTTCTGTCT 58.606 41.667 0.00 0.00 0.00 3.41
3322 3823 6.749036 TTGTTTCCTTTAGTTCCTCTCTCT 57.251 37.500 0.00 0.00 0.00 3.10
3430 3931 5.486735 TCGTTAAGTCCCAAGTTCCAATA 57.513 39.130 0.00 0.00 0.00 1.90
3449 3950 2.884012 TGCCAAAGAACATCAACATCGT 59.116 40.909 0.00 0.00 0.00 3.73
3486 3987 8.867112 TCATTCGATACACCAGAACTTTATAC 57.133 34.615 0.00 0.00 0.00 1.47
3684 4185 2.170397 CCTGTGATGGTGGTAGCATACA 59.830 50.000 0.00 0.97 45.43 2.29
3746 4248 3.706594 ACTGCAGATTAATCTTCTCCGGA 59.293 43.478 23.35 2.93 34.22 5.14
3783 4285 9.116067 GCATTAGATATACTGTGGTTACCAAAA 57.884 33.333 5.33 0.00 34.18 2.44
3856 4358 8.741603 ACTGTAGCCTAAGTTTAGAACAAAAA 57.258 30.769 0.51 0.00 32.47 1.94
3873 4375 2.751166 TCTCAGCTGAAACTGTAGCC 57.249 50.000 18.85 0.00 40.76 3.93
3886 4388 7.325660 TGGAAGAACAAAATATCATCTCAGC 57.674 36.000 0.00 0.00 0.00 4.26
3928 4430 1.952296 CAGGAACTAGATGGCAATGCC 59.048 52.381 18.95 18.95 44.61 4.40
3973 4475 2.164624 GCTCTAGTATACCTGCATCGGG 59.835 54.545 0.00 0.00 35.68 5.14
3996 4498 3.485463 TCCCTGATACCGGCTTTTATG 57.515 47.619 0.00 0.00 0.00 1.90
4005 4507 4.216257 CCTAATTTTGCATCCCTGATACCG 59.784 45.833 0.00 0.00 0.00 4.02
4443 4946 4.374843 TGCCAGCTTGTATTGCTTATTG 57.625 40.909 0.00 0.00 38.92 1.90
4533 5036 6.699642 TCATTGAAAAAGAAATTCAACGGACC 59.300 34.615 4.03 0.00 46.26 4.46
4598 5109 7.792374 ATACATAAGGTATCAACAGCAACAG 57.208 36.000 0.00 0.00 38.30 3.16
4631 5142 7.970061 CAGAATATACAAAGTGTCATGTTTGGG 59.030 37.037 10.28 0.00 37.87 4.12
4634 5145 8.635765 ACCAGAATATACAAAGTGTCATGTTT 57.364 30.769 0.00 0.00 0.00 2.83
4697 5209 2.124320 ACGGTTGCCACTGTTGCT 60.124 55.556 5.42 0.00 39.77 3.91
4700 5212 0.179032 TCATCACGGTTGCCACTGTT 60.179 50.000 0.00 0.00 40.91 3.16
4701 5213 0.036732 ATCATCACGGTTGCCACTGT 59.963 50.000 0.00 0.00 43.98 3.55
4835 5348 5.476254 TCAACACACATTCAATGCATTCCTA 59.524 36.000 9.53 0.00 0.00 2.94
4851 5364 7.254852 TCAAGGAAATTACAAGTTCAACACAC 58.745 34.615 4.74 0.00 34.90 3.82
4875 5389 1.817099 CTGCCCTGCGAGTTCCATC 60.817 63.158 0.00 0.00 0.00 3.51
4931 5445 2.246469 TGCTCTCCTGAGATATCTGGC 58.754 52.381 10.74 0.00 42.73 4.85
4972 5486 3.727258 CCTGATTGCCCGGGGTCA 61.727 66.667 25.28 10.15 0.00 4.02
5102 5620 5.653769 AGTTACCAGAATGCAAGCACAATAT 59.346 36.000 0.00 0.00 31.97 1.28
5129 5647 3.111098 CAAACAAGCTCAAGCACAGTTC 58.889 45.455 4.59 0.00 45.16 3.01
5144 5662 2.346766 TCTGAAGCAGGAGCAAACAA 57.653 45.000 0.00 0.00 45.49 2.83
5202 5729 5.062058 GCCACATTATTTGCAACATGTACAC 59.938 40.000 14.68 6.77 0.00 2.90
5247 5774 3.680937 GCACAGCACACAATTGCATATTT 59.319 39.130 5.05 0.00 45.62 1.40
5341 5868 9.498176 GAACAGGAGGTAAAAGTAACTTCATTA 57.502 33.333 0.00 0.00 0.00 1.90
5348 5875 8.843885 ATTAGTGAACAGGAGGTAAAAGTAAC 57.156 34.615 0.00 0.00 0.00 2.50
5573 6564 1.180029 CATGTGAGGGCAAAGGAAGG 58.820 55.000 0.00 0.00 0.00 3.46
5585 6576 5.089970 TCCTTTGTGAGGTATCATGTGAG 57.910 43.478 0.00 0.00 46.39 3.51
5640 6631 2.172293 GGCATCTTCTCAGGGATGACTT 59.828 50.000 11.18 0.00 42.76 3.01
5658 6649 0.959867 AGCACATTACATGCACGGCA 60.960 50.000 0.00 1.01 45.92 5.69
5662 6653 1.468565 CCAGCAGCACATTACATGCAC 60.469 52.381 0.00 0.00 45.92 4.57
5677 6668 1.153524 ACATCTGCCCAAACCAGCA 59.846 52.632 0.00 0.00 37.46 4.41
5687 6678 1.963338 GCCGCTATCCACATCTGCC 60.963 63.158 0.00 0.00 0.00 4.85
5688 6679 0.604780 ATGCCGCTATCCACATCTGC 60.605 55.000 0.00 0.00 0.00 4.26
5695 6686 1.227943 GCCAAGATGCCGCTATCCA 60.228 57.895 0.00 0.00 0.00 3.41
5729 6727 1.966451 CAACGGTCCAAGTCCCTGC 60.966 63.158 0.00 0.00 0.00 4.85
5810 6812 2.549754 CAAGCCAGTTACAACCACTCTG 59.450 50.000 0.00 0.00 0.00 3.35
5811 6813 2.438021 TCAAGCCAGTTACAACCACTCT 59.562 45.455 0.00 0.00 0.00 3.24
5812 6814 2.808543 CTCAAGCCAGTTACAACCACTC 59.191 50.000 0.00 0.00 0.00 3.51
5813 6815 2.851195 CTCAAGCCAGTTACAACCACT 58.149 47.619 0.00 0.00 0.00 4.00
5815 6817 1.604604 GCTCAAGCCAGTTACAACCA 58.395 50.000 0.00 0.00 34.31 3.67
5842 6849 2.185004 TGTTCTTCTAGTTGCCAGCC 57.815 50.000 0.00 0.00 0.00 4.85
5897 6912 8.230472 GGAATCTCACAAGAATCCAACAATAT 57.770 34.615 4.94 0.00 46.83 1.28
5898 6913 7.630242 GGAATCTCACAAGAATCCAACAATA 57.370 36.000 4.94 0.00 46.83 1.90
5899 6914 6.521151 GGAATCTCACAAGAATCCAACAAT 57.479 37.500 4.94 0.00 46.83 2.71
5914 6929 2.771639 CGACCGCCGAGGAATCTCA 61.772 63.158 3.89 0.00 45.00 3.27
6004 7028 1.202675 ACCAAGCCATTTGCACTTTGG 60.203 47.619 4.70 4.70 44.39 3.28
6023 7051 1.379044 CCAGGGGCTCCATCAACAC 60.379 63.158 4.79 0.00 34.83 3.32
6040 7068 1.306568 AACTGCCTCTCCCTCTCCC 60.307 63.158 0.00 0.00 0.00 4.30
6041 7069 1.621672 CCAACTGCCTCTCCCTCTCC 61.622 65.000 0.00 0.00 0.00 3.71
6042 7070 1.904032 CCAACTGCCTCTCCCTCTC 59.096 63.158 0.00 0.00 0.00 3.20
6043 7071 2.297129 GCCAACTGCCTCTCCCTCT 61.297 63.158 0.00 0.00 0.00 3.69
6044 7072 1.846712 AAGCCAACTGCCTCTCCCTC 61.847 60.000 0.00 0.00 42.71 4.30
6045 7073 1.849823 AAGCCAACTGCCTCTCCCT 60.850 57.895 0.00 0.00 42.71 4.20
6075 7111 1.995066 ATGATGGACCACGGCTCCA 60.995 57.895 0.00 9.05 42.17 3.86
6081 7119 1.086696 GTTCACCATGATGGACCACG 58.913 55.000 20.11 1.06 40.96 4.94
6117 7155 5.163824 CGAGACTGTTTACATGTCAATGCAT 60.164 40.000 0.00 0.00 37.29 3.96
6186 7226 2.118679 TCATACTGAGATGTGGGGGTG 58.881 52.381 0.00 0.00 0.00 4.61
6216 7256 2.271497 GCCCTGCTGCAGATCTGT 59.729 61.111 30.10 0.00 32.44 3.41
6217 7257 2.895865 CGCCCTGCTGCAGATCTG 60.896 66.667 30.10 18.84 32.44 2.90
6218 7258 3.079478 TCGCCCTGCTGCAGATCT 61.079 61.111 30.10 0.00 32.44 2.75
6219 7259 2.588314 CTCGCCCTGCTGCAGATC 60.588 66.667 30.10 18.75 32.44 2.75
6221 7261 4.383861 CACTCGCCCTGCTGCAGA 62.384 66.667 30.10 10.09 32.44 4.26
6234 7288 2.546321 CGTTGCACGCACTCACTC 59.454 61.111 0.00 0.00 33.65 3.51
6280 7343 0.035152 TGTGTGCCTGATGGATGACC 60.035 55.000 0.00 0.00 34.57 4.02
6281 7344 2.048444 ATGTGTGCCTGATGGATGAC 57.952 50.000 0.00 0.00 34.57 3.06
6282 7345 3.054508 TGTTATGTGTGCCTGATGGATGA 60.055 43.478 0.00 0.00 34.57 2.92
6283 7346 3.281158 TGTTATGTGTGCCTGATGGATG 58.719 45.455 0.00 0.00 34.57 3.51
6284 7347 3.650281 TGTTATGTGTGCCTGATGGAT 57.350 42.857 0.00 0.00 34.57 3.41
6285 7348 3.431673 TTGTTATGTGTGCCTGATGGA 57.568 42.857 0.00 0.00 34.57 3.41
6286 7349 3.255395 TGTTTGTTATGTGTGCCTGATGG 59.745 43.478 0.00 0.00 0.00 3.51
6305 7369 2.026641 GGGTGCTGATGTATGCATGTT 58.973 47.619 10.16 0.00 41.45 2.71
6306 7370 1.064537 TGGGTGCTGATGTATGCATGT 60.065 47.619 10.16 0.00 41.45 3.21
6314 7378 2.291209 TCAACAATGGGTGCTGATGT 57.709 45.000 0.00 0.00 27.10 3.06
6380 7452 6.060136 GGTTCAGGACCTGTACTTACTTTTT 58.940 40.000 25.20 0.00 45.55 1.94
6440 7535 4.464008 AGCAGGAAGAAAGTGAAACATGA 58.536 39.130 0.00 0.00 41.43 3.07
6460 7556 1.375098 GATGAAGGCCACAGCAGAGC 61.375 60.000 5.01 0.00 42.56 4.09
6476 7572 5.418524 TCTCTCTCTCTCTCACCAAAAGATG 59.581 44.000 0.00 0.00 0.00 2.90
6520 7620 2.390306 AAAACCCCAACCGGCAATGC 62.390 55.000 0.00 0.00 0.00 3.56
6521 7621 0.602372 CAAAACCCCAACCGGCAATG 60.602 55.000 0.00 0.00 0.00 2.82
6522 7622 1.751563 CAAAACCCCAACCGGCAAT 59.248 52.632 0.00 0.00 0.00 3.56
6523 7623 3.095347 GCAAAACCCCAACCGGCAA 62.095 57.895 0.00 0.00 0.00 4.52
6524 7624 3.541713 GCAAAACCCCAACCGGCA 61.542 61.111 0.00 0.00 0.00 5.69
6525 7625 3.230990 AGCAAAACCCCAACCGGC 61.231 61.111 0.00 0.00 0.00 6.13
6526 7626 2.131067 ACAGCAAAACCCCAACCGG 61.131 57.895 0.00 0.00 0.00 5.28
6541 7645 0.174845 CCATGCAAATGCCCTCACAG 59.825 55.000 2.46 0.00 41.18 3.66
6551 7655 1.217183 AGGCTCCATCTCCATGCAAAT 59.783 47.619 0.00 0.00 0.00 2.32
6553 7657 0.627451 AAGGCTCCATCTCCATGCAA 59.373 50.000 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.