Multiple sequence alignment - TraesCS2A01G004100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G004100 chr2A 100.000 3038 0 0 1 3038 2365335 2368372 0.000000e+00 5611
1 TraesCS2A01G004100 chr2A 94.204 1501 69 6 966 2450 2884353 2885851 0.000000e+00 2274
2 TraesCS2A01G004100 chr2A 96.552 783 26 1 1 783 2883557 2884338 0.000000e+00 1295
3 TraesCS2A01G004100 chr2A 87.628 784 94 3 1 783 2323737 2324518 0.000000e+00 907
4 TraesCS2A01G004100 chr2A 85.842 784 108 3 1 783 2917901 2918682 0.000000e+00 830
5 TraesCS2A01G004100 chr2A 85.568 783 112 1 1 783 2492662 2491881 0.000000e+00 819
6 TraesCS2A01G004100 chr2A 79.911 672 117 11 966 1622 2381277 2381945 7.620000e-131 477
7 TraesCS2A01G004100 chr2A 81.801 533 88 8 1623 2152 2919333 2919859 3.600000e-119 438
8 TraesCS2A01G004100 chr2A 90.260 308 28 2 2495 2802 2885850 2886155 4.720000e-108 401
9 TraesCS2A01G004100 chr2A 82.727 440 61 15 2283 2716 2326357 2326787 7.950000e-101 377
10 TraesCS2A01G004100 chr2A 80.000 200 39 1 959 1157 2989186 2989385 2.440000e-31 147
11 TraesCS2A01G004100 chrUn 87.883 784 92 3 1 783 305055222 305056003 0.000000e+00 918
12 TraesCS2A01G004100 chrUn 86.097 784 106 3 1 783 15493328 15492547 0.000000e+00 841
13 TraesCS2A01G004100 chrUn 85.620 758 102 5 11 766 15966793 15966041 0.000000e+00 789
14 TraesCS2A01G004100 chrUn 82.440 672 100 13 966 1622 15916020 15915352 3.400000e-159 571
15 TraesCS2A01G004100 chrUn 81.651 436 68 12 2283 2715 15914116 15913690 4.820000e-93 351
16 TraesCS2A01G004100 chrUn 78.755 546 94 15 1623 2152 364735285 364735824 2.240000e-91 346
17 TraesCS2A01G004100 chrUn 78.755 546 94 15 1623 2152 460309629 460310168 2.240000e-91 346
18 TraesCS2A01G004100 chrUn 78.839 534 92 16 1627 2150 334805144 334805666 1.040000e-89 340
19 TraesCS2A01G004100 chrUn 78.652 534 93 16 1627 2150 15554332 15554854 4.850000e-88 335
20 TraesCS2A01G004100 chrUn 78.343 531 100 11 1627 2150 15778533 15779055 2.260000e-86 329
21 TraesCS2A01G004100 chrUn 78.343 531 100 11 1627 2150 439690672 439691194 2.260000e-86 329
22 TraesCS2A01G004100 chrUn 77.589 531 89 22 1627 2150 248041196 248041703 8.240000e-76 294
23 TraesCS2A01G004100 chrUn 79.529 425 62 17 2283 2704 15849800 15850202 2.310000e-71 279
24 TraesCS2A01G004100 chrUn 82.707 266 36 9 2283 2547 15632973 15633229 8.470000e-56 228
25 TraesCS2A01G004100 chrUn 82.331 266 37 9 2283 2547 250906003 250906259 3.940000e-54 222
26 TraesCS2A01G004100 chrUn 82.156 269 38 9 2283 2550 283169686 283169427 3.940000e-54 222
27 TraesCS2A01G004100 chrUn 88.696 115 12 1 2036 2150 15558354 15558467 4.080000e-29 139
28 TraesCS2A01G004100 chr2D 87.933 779 94 0 1 779 2678811 2678033 0.000000e+00 918
29 TraesCS2A01G004100 chr2D 81.515 660 110 10 966 1615 22568000 22567343 1.600000e-147 532
30 TraesCS2A01G004100 chr2D 78.701 385 54 15 2331 2710 2365535 2365896 6.550000e-57 231
31 TraesCS2A01G004100 chr2D 91.176 136 12 0 2901 3036 2333825 2333960 5.170000e-43 185
32 TraesCS2A01G004100 chr2D 79.891 184 19 8 2855 3023 2730048 2729868 5.320000e-23 119
33 TraesCS2A01G004100 chr2D 86.667 90 12 0 1153 1242 2732859 2732770 1.930000e-17 100
34 TraesCS2A01G004100 chr2B 86.438 730 94 5 56 783 31395272 31394546 0.000000e+00 795
35 TraesCS2A01G004100 chr2B 79.618 785 115 29 966 1729 667790906 667791666 3.470000e-144 521
36 TraesCS2A01G004100 chr2B 80.744 618 106 10 1008 1614 8536858 8537473 1.280000e-128 470
37 TraesCS2A01G004100 chr2B 82.099 486 82 3 1133 1614 8342734 8343218 7.840000e-111 411
38 TraesCS2A01G004100 chr2B 79.035 539 85 24 1627 2155 9123368 9122848 8.060000e-91 344
39 TraesCS2A01G004100 chr2B 78.839 534 92 16 1627 2150 8389589 8390111 1.040000e-89 340
40 TraesCS2A01G004100 chr2B 97.872 188 4 0 772 959 792777942 792778129 2.920000e-85 326
41 TraesCS2A01G004100 chr2B 81.768 181 32 1 959 1138 8568205 8568385 1.890000e-32 150
42 TraesCS2A01G004100 chr2B 79.365 189 20 11 2850 3023 8672574 8672758 6.880000e-22 115
43 TraesCS2A01G004100 chr4B 80.213 657 101 19 966 1615 634316501 634317135 1.650000e-127 466
44 TraesCS2A01G004100 chr3B 81.761 477 80 5 1150 1621 52917315 52916841 2.840000e-105 392
45 TraesCS2A01G004100 chr6B 99.448 181 1 0 779 959 39714876 39715056 2.260000e-86 329
46 TraesCS2A01G004100 chr6B 98.895 181 2 0 779 959 8141359 8141179 1.050000e-84 324
47 TraesCS2A01G004100 chr6B 98.895 181 2 0 779 959 714947832 714947652 1.050000e-84 324
48 TraesCS2A01G004100 chr7B 99.444 180 1 0 780 959 691275751 691275930 8.120000e-86 327
49 TraesCS2A01G004100 chr7B 97.861 187 4 0 773 959 617834304 617834118 1.050000e-84 324
50 TraesCS2A01G004100 chr7B 73.089 628 105 42 1021 1625 31795630 31795044 6.740000e-37 165
51 TraesCS2A01G004100 chr1B 98.895 181 2 0 779 959 71190011 71190191 1.050000e-84 324
52 TraesCS2A01G004100 chr1B 98.895 181 2 0 779 959 588495067 588495247 1.050000e-84 324
53 TraesCS2A01G004100 chr1A 98.895 181 2 0 779 959 6671497 6671677 1.050000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G004100 chr2A 2365335 2368372 3037 False 5611.000000 5611 100.0000 1 3038 1 chr2A.!!$F1 3037
1 TraesCS2A01G004100 chr2A 2883557 2886155 2598 False 1323.333333 2274 93.6720 1 2802 3 chr2A.!!$F5 2801
2 TraesCS2A01G004100 chr2A 2491881 2492662 781 True 819.000000 819 85.5680 1 783 1 chr2A.!!$R1 782
3 TraesCS2A01G004100 chr2A 2323737 2326787 3050 False 642.000000 907 85.1775 1 2716 2 chr2A.!!$F4 2715
4 TraesCS2A01G004100 chr2A 2917901 2919859 1958 False 634.000000 830 83.8215 1 2152 2 chr2A.!!$F6 2151
5 TraesCS2A01G004100 chr2A 2381277 2381945 668 False 477.000000 477 79.9110 966 1622 1 chr2A.!!$F2 656
6 TraesCS2A01G004100 chrUn 305055222 305056003 781 False 918.000000 918 87.8830 1 783 1 chrUn.!!$F6 782
7 TraesCS2A01G004100 chrUn 15492547 15493328 781 True 841.000000 841 86.0970 1 783 1 chrUn.!!$R1 782
8 TraesCS2A01G004100 chrUn 15966041 15966793 752 True 789.000000 789 85.6200 11 766 1 chrUn.!!$R2 755
9 TraesCS2A01G004100 chrUn 15913690 15916020 2330 True 461.000000 571 82.0455 966 2715 2 chrUn.!!$R4 1749
10 TraesCS2A01G004100 chrUn 364735285 364735824 539 False 346.000000 346 78.7550 1623 2152 1 chrUn.!!$F8 529
11 TraesCS2A01G004100 chrUn 460309629 460310168 539 False 346.000000 346 78.7550 1623 2152 1 chrUn.!!$F10 529
12 TraesCS2A01G004100 chrUn 334805144 334805666 522 False 340.000000 340 78.8390 1627 2150 1 chrUn.!!$F7 523
13 TraesCS2A01G004100 chrUn 15778533 15779055 522 False 329.000000 329 78.3430 1627 2150 1 chrUn.!!$F2 523
14 TraesCS2A01G004100 chrUn 439690672 439691194 522 False 329.000000 329 78.3430 1627 2150 1 chrUn.!!$F9 523
15 TraesCS2A01G004100 chrUn 248041196 248041703 507 False 294.000000 294 77.5890 1627 2150 1 chrUn.!!$F4 523
16 TraesCS2A01G004100 chrUn 15554332 15558467 4135 False 237.000000 335 83.6740 1627 2150 2 chrUn.!!$F11 523
17 TraesCS2A01G004100 chr2D 2678033 2678811 778 True 918.000000 918 87.9330 1 779 1 chr2D.!!$R1 778
18 TraesCS2A01G004100 chr2D 22567343 22568000 657 True 532.000000 532 81.5150 966 1615 1 chr2D.!!$R2 649
19 TraesCS2A01G004100 chr2B 31394546 31395272 726 True 795.000000 795 86.4380 56 783 1 chr2B.!!$R2 727
20 TraesCS2A01G004100 chr2B 667790906 667791666 760 False 521.000000 521 79.6180 966 1729 1 chr2B.!!$F6 763
21 TraesCS2A01G004100 chr2B 8536858 8537473 615 False 470.000000 470 80.7440 1008 1614 1 chr2B.!!$F3 606
22 TraesCS2A01G004100 chr2B 9122848 9123368 520 True 344.000000 344 79.0350 1627 2155 1 chr2B.!!$R1 528
23 TraesCS2A01G004100 chr2B 8389589 8390111 522 False 340.000000 340 78.8390 1627 2150 1 chr2B.!!$F2 523
24 TraesCS2A01G004100 chr4B 634316501 634317135 634 False 466.000000 466 80.2130 966 1615 1 chr4B.!!$F1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 953 0.03213 TCCGGCGCTAAGATGCTTAG 59.968 55.0 7.64 9.3 0.0 2.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2815 7254 1.542472 CTGCACATGACCTTCAATGCA 59.458 47.619 14.37 14.37 44.8 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.141657 GTGCATTAGAGGGCATGGAGA 59.858 52.381 0.00 0.00 42.75 3.71
106 107 0.684479 TGGCTAGGTGATGAGCTCGT 60.684 55.000 8.55 8.55 38.79 4.18
189 190 1.587547 GAAGGCATGGGATCTTCGTC 58.412 55.000 0.00 0.00 0.00 4.20
210 211 7.047891 TCGTCAACTAAGATTGGAGCATATTT 58.952 34.615 0.00 0.00 0.00 1.40
387 388 7.031975 CCCTCTTTTGCAAGTTCTGATTATTC 58.968 38.462 0.00 0.00 0.00 1.75
425 426 3.603965 TTGGGGTTGCCTTTCTTAGAA 57.396 42.857 0.00 0.00 0.00 2.10
682 683 4.348168 AGAAACTAGTCTTGGGAAGCTGAA 59.652 41.667 0.00 0.00 0.00 3.02
737 738 2.362397 CCTCTTGATGCTAACCTCGCTA 59.638 50.000 0.00 0.00 0.00 4.26
746 747 4.181578 TGCTAACCTCGCTAAAGACATTC 58.818 43.478 0.00 0.00 0.00 2.67
768 769 9.865321 CATTCATTGTAAGAAAATCAGATGGTT 57.135 29.630 0.00 0.00 0.00 3.67
770 771 9.695526 TTCATTGTAAGAAAATCAGATGGTTTG 57.304 29.630 0.00 0.00 0.00 2.93
779 780 1.203001 TCAGATGGTTTGGTTGGACCC 60.203 52.381 0.00 0.00 37.50 4.46
780 781 0.856982 AGATGGTTTGGTTGGACCCA 59.143 50.000 0.00 0.00 37.50 4.51
781 782 0.966179 GATGGTTTGGTTGGACCCAC 59.034 55.000 0.00 0.00 37.50 4.61
782 783 0.560688 ATGGTTTGGTTGGACCCACT 59.439 50.000 0.00 0.00 37.50 4.00
784 785 0.396556 GGTTTGGTTGGACCCACTGT 60.397 55.000 0.00 0.00 37.50 3.55
785 786 1.480789 GTTTGGTTGGACCCACTGTT 58.519 50.000 0.00 0.00 37.50 3.16
786 787 1.828595 GTTTGGTTGGACCCACTGTTT 59.171 47.619 0.00 0.00 37.50 2.83
787 788 1.770294 TTGGTTGGACCCACTGTTTC 58.230 50.000 0.00 0.00 37.50 2.78
789 790 1.006043 TGGTTGGACCCACTGTTTCAA 59.994 47.619 0.00 0.00 37.50 2.69
790 791 2.104170 GGTTGGACCCACTGTTTCAAA 58.896 47.619 0.00 0.00 30.04 2.69
792 793 3.892588 GGTTGGACCCACTGTTTCAAATA 59.107 43.478 0.00 0.00 30.04 1.40
793 794 4.022329 GGTTGGACCCACTGTTTCAAATAG 60.022 45.833 0.00 0.00 30.04 1.73
794 795 3.153919 TGGACCCACTGTTTCAAATAGC 58.846 45.455 0.00 0.00 0.00 2.97
795 796 2.492088 GGACCCACTGTTTCAAATAGCC 59.508 50.000 0.00 0.00 0.00 3.93
796 797 2.492088 GACCCACTGTTTCAAATAGCCC 59.508 50.000 0.00 0.00 0.00 5.19
797 798 1.472480 CCCACTGTTTCAAATAGCCCG 59.528 52.381 0.00 0.00 0.00 6.13
798 799 1.135402 CCACTGTTTCAAATAGCCCGC 60.135 52.381 0.00 0.00 0.00 6.13
799 800 1.812571 CACTGTTTCAAATAGCCCGCT 59.187 47.619 0.00 0.00 0.00 5.52
800 801 3.006940 CACTGTTTCAAATAGCCCGCTA 58.993 45.455 0.00 0.00 0.00 4.26
801 802 3.627577 CACTGTTTCAAATAGCCCGCTAT 59.372 43.478 3.31 3.31 40.63 2.97
802 803 4.814234 CACTGTTTCAAATAGCCCGCTATA 59.186 41.667 9.56 0.00 38.20 1.31
803 804 5.050091 CACTGTTTCAAATAGCCCGCTATAG 60.050 44.000 9.56 6.26 38.20 1.31
804 805 3.813166 TGTTTCAAATAGCCCGCTATAGC 59.187 43.478 15.09 15.09 38.20 2.97
805 806 4.065789 GTTTCAAATAGCCCGCTATAGCT 58.934 43.478 21.98 6.31 43.20 3.32
806 807 3.594603 TCAAATAGCCCGCTATAGCTC 57.405 47.619 21.98 11.04 40.56 4.09
807 808 2.233922 TCAAATAGCCCGCTATAGCTCC 59.766 50.000 21.98 10.06 40.56 4.70
808 809 0.818296 AATAGCCCGCTATAGCTCCG 59.182 55.000 21.98 10.15 40.56 4.63
809 810 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
810 811 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
811 812 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
819 820 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
820 821 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
821 822 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
822 823 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
823 824 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
840 841 4.934515 GCTATAGCGTTTACAGAAGGTCT 58.065 43.478 9.40 0.00 0.00 3.85
841 842 5.349809 GCTATAGCGTTTACAGAAGGTCTT 58.650 41.667 9.40 0.00 0.00 3.01
842 843 5.232414 GCTATAGCGTTTACAGAAGGTCTTG 59.768 44.000 9.40 0.00 0.00 3.02
843 844 2.143925 AGCGTTTACAGAAGGTCTTGC 58.856 47.619 0.00 0.00 0.00 4.01
844 845 1.136336 GCGTTTACAGAAGGTCTTGCG 60.136 52.381 0.00 0.00 0.00 4.85
845 846 1.136336 CGTTTACAGAAGGTCTTGCGC 60.136 52.381 0.00 0.00 0.00 6.09
846 847 2.143925 GTTTACAGAAGGTCTTGCGCT 58.856 47.619 9.73 0.00 0.00 5.92
847 848 3.323243 GTTTACAGAAGGTCTTGCGCTA 58.677 45.455 9.73 0.00 0.00 4.26
848 849 3.671008 TTACAGAAGGTCTTGCGCTAA 57.329 42.857 9.73 0.00 0.00 3.09
849 850 2.086054 ACAGAAGGTCTTGCGCTAAG 57.914 50.000 9.73 11.02 37.76 2.18
850 851 1.618837 ACAGAAGGTCTTGCGCTAAGA 59.381 47.619 9.73 13.31 43.01 2.10
851 852 2.266554 CAGAAGGTCTTGCGCTAAGAG 58.733 52.381 18.44 8.07 45.71 2.85
852 853 2.094494 CAGAAGGTCTTGCGCTAAGAGA 60.094 50.000 18.44 9.99 45.71 3.10
853 854 2.094442 AGAAGGTCTTGCGCTAAGAGAC 60.094 50.000 18.44 18.59 45.71 3.36
854 855 1.551452 AGGTCTTGCGCTAAGAGACT 58.449 50.000 22.91 18.83 45.71 3.24
855 856 1.896465 AGGTCTTGCGCTAAGAGACTT 59.104 47.619 22.91 17.23 45.71 3.01
856 857 2.300437 AGGTCTTGCGCTAAGAGACTTT 59.700 45.455 22.91 14.31 45.71 2.66
857 858 2.413453 GGTCTTGCGCTAAGAGACTTTG 59.587 50.000 22.91 0.00 45.71 2.77
858 859 2.413453 GTCTTGCGCTAAGAGACTTTGG 59.587 50.000 18.44 0.00 45.71 3.28
859 860 2.037251 TCTTGCGCTAAGAGACTTTGGT 59.963 45.455 9.73 0.00 40.43 3.67
860 861 2.080286 TGCGCTAAGAGACTTTGGTC 57.920 50.000 9.73 0.00 42.41 4.02
861 862 1.337823 TGCGCTAAGAGACTTTGGTCC 60.338 52.381 9.73 0.00 43.05 4.46
862 863 1.337823 GCGCTAAGAGACTTTGGTCCA 60.338 52.381 0.00 0.00 43.05 4.02
863 864 2.870435 GCGCTAAGAGACTTTGGTCCAA 60.870 50.000 0.00 0.00 43.05 3.53
864 865 3.399330 CGCTAAGAGACTTTGGTCCAAA 58.601 45.455 16.26 16.26 43.05 3.28
865 866 3.186613 CGCTAAGAGACTTTGGTCCAAAC 59.813 47.826 13.26 4.96 43.05 2.93
866 867 4.134563 GCTAAGAGACTTTGGTCCAAACA 58.865 43.478 13.26 0.00 43.05 2.83
867 868 4.578928 GCTAAGAGACTTTGGTCCAAACAA 59.421 41.667 13.26 0.00 43.05 2.83
868 869 5.067283 GCTAAGAGACTTTGGTCCAAACAAA 59.933 40.000 13.26 0.00 43.05 2.83
869 870 6.239036 GCTAAGAGACTTTGGTCCAAACAAAT 60.239 38.462 13.26 0.00 43.05 2.32
870 871 5.520376 AGAGACTTTGGTCCAAACAAATG 57.480 39.130 13.26 6.01 43.05 2.32
871 872 5.200483 AGAGACTTTGGTCCAAACAAATGA 58.800 37.500 13.26 0.00 43.05 2.57
872 873 5.656416 AGAGACTTTGGTCCAAACAAATGAA 59.344 36.000 13.26 0.00 43.05 2.57
873 874 5.660460 AGACTTTGGTCCAAACAAATGAAC 58.340 37.500 13.26 4.31 43.05 3.18
874 875 5.186797 AGACTTTGGTCCAAACAAATGAACA 59.813 36.000 13.26 0.00 43.05 3.18
875 876 5.799213 ACTTTGGTCCAAACAAATGAACAA 58.201 33.333 13.26 0.00 37.22 2.83
876 877 6.234177 ACTTTGGTCCAAACAAATGAACAAA 58.766 32.000 13.26 0.00 41.86 2.83
877 878 6.148645 ACTTTGGTCCAAACAAATGAACAAAC 59.851 34.615 13.26 0.00 39.91 2.93
878 879 5.152623 TGGTCCAAACAAATGAACAAACA 57.847 34.783 0.00 0.00 0.00 2.83
879 880 5.738909 TGGTCCAAACAAATGAACAAACAT 58.261 33.333 0.00 0.00 0.00 2.71
880 881 6.176183 TGGTCCAAACAAATGAACAAACATT 58.824 32.000 0.00 0.00 41.43 2.71
881 882 6.656693 TGGTCCAAACAAATGAACAAACATTT 59.343 30.769 0.00 0.00 46.85 2.32
882 883 7.175641 TGGTCCAAACAAATGAACAAACATTTT 59.824 29.630 0.00 0.00 44.63 1.82
883 884 8.669243 GGTCCAAACAAATGAACAAACATTTTA 58.331 29.630 0.00 0.00 44.63 1.52
891 892 9.039500 CAAATGAACAAACATTTTAAATAGCGC 57.961 29.630 0.00 0.00 44.63 5.92
892 893 6.369326 TGAACAAACATTTTAAATAGCGCG 57.631 33.333 0.00 0.00 0.00 6.86
893 894 4.816277 ACAAACATTTTAAATAGCGCGC 57.184 36.364 26.66 26.66 0.00 6.86
894 895 4.481463 ACAAACATTTTAAATAGCGCGCT 58.519 34.783 38.01 38.01 0.00 5.92
895 896 5.632959 ACAAACATTTTAAATAGCGCGCTA 58.367 33.333 39.72 39.72 0.00 4.26
896 897 6.262601 ACAAACATTTTAAATAGCGCGCTAT 58.737 32.000 40.32 40.32 40.63 2.97
897 898 7.411274 ACAAACATTTTAAATAGCGCGCTATA 58.589 30.769 43.81 31.73 38.20 1.31
898 899 7.586300 ACAAACATTTTAAATAGCGCGCTATAG 59.414 33.333 43.81 29.40 38.20 1.31
899 900 5.618561 ACATTTTAAATAGCGCGCTATAGC 58.381 37.500 43.81 15.09 38.20 2.97
900 901 5.408604 ACATTTTAAATAGCGCGCTATAGCT 59.591 36.000 43.81 33.17 46.53 3.32
901 902 5.511088 TTTTAAATAGCGCGCTATAGCTC 57.489 39.130 43.81 13.77 43.44 4.09
902 903 1.997669 AAATAGCGCGCTATAGCTCC 58.002 50.000 43.81 10.26 43.44 4.70
903 904 0.179161 AATAGCGCGCTATAGCTCCG 60.179 55.000 43.81 22.32 43.44 4.63
906 907 2.868196 CGCGCTATAGCTCCGCTA 59.132 61.111 21.98 0.00 45.55 4.26
914 915 1.579932 TAGCTCCGCTATAGCACGC 59.420 57.895 23.99 20.26 42.62 5.34
915 916 0.889638 TAGCTCCGCTATAGCACGCT 60.890 55.000 25.78 25.78 42.62 5.07
916 917 0.889638 AGCTCCGCTATAGCACGCTA 60.890 55.000 23.99 0.39 42.62 4.26
917 918 0.171455 GCTCCGCTATAGCACGCTAT 59.829 55.000 23.99 15.45 42.21 2.97
918 919 1.400846 GCTCCGCTATAGCACGCTATA 59.599 52.381 23.99 15.99 42.21 1.31
927 928 6.951256 CTATAGCACGCTATAGCATTTGAA 57.049 37.500 25.42 9.81 46.26 2.69
928 929 7.351414 CTATAGCACGCTATAGCATTTGAAA 57.649 36.000 25.42 9.51 46.26 2.69
929 930 4.542662 AGCACGCTATAGCATTTGAAAG 57.457 40.909 23.99 7.87 42.21 2.62
930 931 4.191544 AGCACGCTATAGCATTTGAAAGA 58.808 39.130 23.99 0.00 42.21 2.52
931 932 4.272018 AGCACGCTATAGCATTTGAAAGAG 59.728 41.667 23.99 6.48 42.21 2.85
932 933 4.553547 GCACGCTATAGCATTTGAAAGAGG 60.554 45.833 23.99 5.98 42.21 3.69
933 934 4.572389 CACGCTATAGCATTTGAAAGAGGT 59.428 41.667 23.99 6.60 42.21 3.85
934 935 4.811557 ACGCTATAGCATTTGAAAGAGGTC 59.188 41.667 23.99 0.00 42.21 3.85
935 936 4.212214 CGCTATAGCATTTGAAAGAGGTCC 59.788 45.833 23.99 0.00 42.21 4.46
936 937 4.212214 GCTATAGCATTTGAAAGAGGTCCG 59.788 45.833 20.01 0.00 41.59 4.79
937 938 1.826385 AGCATTTGAAAGAGGTCCGG 58.174 50.000 0.00 0.00 0.00 5.14
938 939 0.171231 GCATTTGAAAGAGGTCCGGC 59.829 55.000 0.00 0.00 0.00 6.13
939 940 0.447801 CATTTGAAAGAGGTCCGGCG 59.552 55.000 0.00 0.00 0.00 6.46
940 941 1.305930 ATTTGAAAGAGGTCCGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
941 942 2.391724 TTTGAAAGAGGTCCGGCGCT 62.392 55.000 7.64 0.00 0.00 5.92
942 943 1.537814 TTGAAAGAGGTCCGGCGCTA 61.538 55.000 7.64 0.00 0.00 4.26
943 944 1.217244 GAAAGAGGTCCGGCGCTAA 59.783 57.895 7.64 0.00 0.00 3.09
944 945 0.806492 GAAAGAGGTCCGGCGCTAAG 60.806 60.000 7.64 0.00 0.00 2.18
945 946 1.255667 AAAGAGGTCCGGCGCTAAGA 61.256 55.000 7.64 0.00 0.00 2.10
946 947 1.043673 AAGAGGTCCGGCGCTAAGAT 61.044 55.000 7.64 0.00 0.00 2.40
947 948 1.300233 GAGGTCCGGCGCTAAGATG 60.300 63.158 7.64 0.00 0.00 2.90
948 949 2.967615 GGTCCGGCGCTAAGATGC 60.968 66.667 7.64 0.00 0.00 3.91
949 950 2.107141 GTCCGGCGCTAAGATGCT 59.893 61.111 7.64 0.00 0.00 3.79
950 951 1.521681 GTCCGGCGCTAAGATGCTT 60.522 57.895 7.64 0.00 0.00 3.91
951 952 0.249322 GTCCGGCGCTAAGATGCTTA 60.249 55.000 7.64 0.00 0.00 3.09
952 953 0.032130 TCCGGCGCTAAGATGCTTAG 59.968 55.000 7.64 9.30 0.00 2.18
953 954 1.560860 CCGGCGCTAAGATGCTTAGC 61.561 60.000 22.75 22.75 42.82 3.09
957 958 1.202816 GCTAAGATGCTTAGCGCGC 59.797 57.895 26.66 26.66 43.27 6.86
958 959 1.218230 GCTAAGATGCTTAGCGCGCT 61.218 55.000 38.01 38.01 43.27 5.92
959 960 0.781191 CTAAGATGCTTAGCGCGCTC 59.219 55.000 40.23 24.42 43.27 5.03
960 961 0.102300 TAAGATGCTTAGCGCGCTCA 59.898 50.000 40.23 29.56 43.27 4.26
961 962 0.740868 AAGATGCTTAGCGCGCTCAA 60.741 50.000 40.23 26.34 43.27 3.02
962 963 1.150567 AGATGCTTAGCGCGCTCAAG 61.151 55.000 40.23 33.31 43.27 3.02
963 964 2.098842 GATGCTTAGCGCGCTCAAGG 62.099 60.000 40.23 23.01 43.27 3.61
964 965 2.509336 GCTTAGCGCGCTCAAGGA 60.509 61.111 40.23 18.17 0.00 3.36
984 985 1.866483 ATGTGGAATGGCAGCTCCCA 61.866 55.000 0.00 0.00 39.65 4.37
991 992 1.203441 ATGGCAGCTCCCAGTTGAGA 61.203 55.000 1.14 0.00 38.50 3.27
1002 1003 4.948847 TCCCAGTTGAGATTATCACGATG 58.051 43.478 0.00 0.00 37.77 3.84
1143 1144 0.108377 TGCGACATACAACATCGGCT 60.108 50.000 0.00 0.00 36.37 5.52
1145 1146 1.921243 CGACATACAACATCGGCTGA 58.079 50.000 0.00 0.00 32.22 4.26
1464 1482 2.681778 ACACTGGAGCCCCTCTCG 60.682 66.667 0.00 0.00 42.82 4.04
1701 1761 1.414181 GCACCTATCTGCAGCTTCCTA 59.586 52.381 9.47 0.00 37.11 2.94
1800 1860 1.391157 CCCTTCAGCTCCTCTCCTCG 61.391 65.000 0.00 0.00 0.00 4.63
1876 1936 1.071605 GCACAAGCTTACCAGTCTCG 58.928 55.000 0.00 0.00 37.91 4.04
1939 1999 3.106986 AACGATGGCCTCCCGGATG 62.107 63.158 0.73 0.00 0.00 3.51
1963 2026 4.072131 CCTGGTAGAGCTAGATGTCTCTC 58.928 52.174 0.00 0.00 40.00 3.20
1977 2040 4.299547 TCTCGGTGCTGCAACGCT 62.300 61.111 33.26 0.00 44.89 5.07
2009 2072 0.909610 CAGTGCAGGGGGTTAGAGGA 60.910 60.000 0.00 0.00 0.00 3.71
2157 5887 2.493278 AGGACAATGCCTTGGAATTTCG 59.507 45.455 6.67 0.00 36.64 3.46
2163 5893 0.735471 GCCTTGGAATTTCGAGCCTC 59.265 55.000 0.00 0.00 0.00 4.70
2200 5930 5.719563 TCTTTCCATACATCTGGTGAGTACA 59.280 40.000 0.00 0.00 37.57 2.90
2202 5932 5.791336 TCCATACATCTGGTGAGTACATC 57.209 43.478 0.00 0.00 37.57 3.06
2237 5976 0.751643 ACTTGTGGCAGCCGTTTTCT 60.752 50.000 7.03 0.00 0.00 2.52
2307 6741 2.040278 TCAGCAAATGCCTTCTACAGGT 59.960 45.455 0.94 0.00 46.07 4.00
2316 6750 4.642429 TGCCTTCTACAGGTCTCTTTTTC 58.358 43.478 0.00 0.00 46.07 2.29
2393 6831 3.056250 TGTGTGCAGGTGTTTGTTTGATT 60.056 39.130 0.00 0.00 0.00 2.57
2489 6927 6.158598 CCTATTTTGGGTGTCACAATCAAAG 58.841 40.000 5.12 1.93 29.56 2.77
2504 6942 8.210265 TCACAATCAAAGTATCACTATGGCATA 58.790 33.333 7.06 7.06 0.00 3.14
2505 6943 8.501580 CACAATCAAAGTATCACTATGGCATAG 58.498 37.037 28.48 28.48 38.81 2.23
2522 6960 6.005823 TGGCATAGTGATGGAATAAATGAGG 58.994 40.000 0.00 0.00 33.26 3.86
2530 6968 4.329638 TGGAATAAATGAGGCTTTGGGA 57.670 40.909 0.00 0.00 0.00 4.37
2547 6985 6.293845 GCTTTGGGATTGAGCTACTGATATTG 60.294 42.308 0.00 0.00 33.72 1.90
2552 6990 6.465035 GGGATTGAGCTACTGATATTGAGGTT 60.465 42.308 0.00 0.00 0.00 3.50
2628 7067 8.000780 ACATTCCTAATTTCTATTGCCTTGTC 57.999 34.615 0.00 0.00 0.00 3.18
2629 7068 7.615365 ACATTCCTAATTTCTATTGCCTTGTCA 59.385 33.333 0.00 0.00 0.00 3.58
2641 7080 2.229792 GCCTTGTCATTCAGGTGTTCA 58.770 47.619 0.00 0.00 0.00 3.18
2746 7185 4.960938 TCACAAGAATAGTCTGCAACACT 58.039 39.130 0.00 3.57 33.05 3.55
2780 7219 3.976793 AATGCATATTCGTGCTGGAAG 57.023 42.857 0.00 0.00 45.27 3.46
2782 7221 2.279741 TGCATATTCGTGCTGGAAGTC 58.720 47.619 0.34 0.00 45.27 3.01
2788 7227 2.084610 TCGTGCTGGAAGTCTGAATG 57.915 50.000 0.00 0.00 35.30 2.67
2811 7250 5.369685 TGTGCAACATGTTACATTACTGG 57.630 39.130 14.44 0.00 45.67 4.00
2812 7251 4.824537 TGTGCAACATGTTACATTACTGGT 59.175 37.500 14.44 0.00 45.67 4.00
2813 7252 5.998363 TGTGCAACATGTTACATTACTGGTA 59.002 36.000 14.44 0.00 45.67 3.25
2814 7253 6.486993 TGTGCAACATGTTACATTACTGGTAA 59.513 34.615 14.44 0.00 45.67 2.85
2815 7254 7.175816 TGTGCAACATGTTACATTACTGGTAAT 59.824 33.333 14.44 0.66 45.67 1.89
2816 7255 7.484641 GTGCAACATGTTACATTACTGGTAATG 59.515 37.037 23.67 23.67 45.95 1.90
2826 7265 6.455360 CATTACTGGTAATGCATTGAAGGT 57.545 37.500 22.27 16.12 43.79 3.50
2827 7266 6.498304 CATTACTGGTAATGCATTGAAGGTC 58.502 40.000 22.27 5.56 43.79 3.85
2828 7267 4.032960 ACTGGTAATGCATTGAAGGTCA 57.967 40.909 22.27 9.41 0.00 4.02
2829 7268 4.603131 ACTGGTAATGCATTGAAGGTCAT 58.397 39.130 22.27 0.00 0.00 3.06
2830 7269 4.400251 ACTGGTAATGCATTGAAGGTCATG 59.600 41.667 22.27 5.08 0.00 3.07
2831 7270 4.343231 TGGTAATGCATTGAAGGTCATGT 58.657 39.130 22.27 0.00 0.00 3.21
2832 7271 4.158209 TGGTAATGCATTGAAGGTCATGTG 59.842 41.667 22.27 0.00 0.00 3.21
2833 7272 2.953466 ATGCATTGAAGGTCATGTGC 57.047 45.000 0.00 8.41 38.23 4.57
2834 7273 1.618487 TGCATTGAAGGTCATGTGCA 58.382 45.000 12.19 12.19 42.23 4.57
2835 7274 1.542472 TGCATTGAAGGTCATGTGCAG 59.458 47.619 12.19 0.00 40.76 4.41
2836 7275 1.542915 GCATTGAAGGTCATGTGCAGT 59.457 47.619 9.80 0.00 37.90 4.40
2837 7276 2.029649 GCATTGAAGGTCATGTGCAGTT 60.030 45.455 9.80 0.00 37.90 3.16
2838 7277 3.553508 GCATTGAAGGTCATGTGCAGTTT 60.554 43.478 9.80 0.00 37.90 2.66
2839 7278 4.624015 CATTGAAGGTCATGTGCAGTTTT 58.376 39.130 0.00 0.00 0.00 2.43
2840 7279 3.713858 TGAAGGTCATGTGCAGTTTTG 57.286 42.857 0.00 0.00 0.00 2.44
2841 7280 3.286353 TGAAGGTCATGTGCAGTTTTGA 58.714 40.909 0.00 0.00 0.00 2.69
2842 7281 3.698539 TGAAGGTCATGTGCAGTTTTGAA 59.301 39.130 0.00 0.00 0.00 2.69
2843 7282 4.159321 TGAAGGTCATGTGCAGTTTTGAAA 59.841 37.500 0.00 0.00 0.00 2.69
2844 7283 4.045636 AGGTCATGTGCAGTTTTGAAAC 57.954 40.909 0.00 0.00 39.17 2.78
2846 7285 4.044426 GGTCATGTGCAGTTTTGAAACTC 58.956 43.478 6.16 3.47 45.65 3.01
2847 7286 4.439974 GGTCATGTGCAGTTTTGAAACTCA 60.440 41.667 6.16 3.15 45.65 3.41
2848 7287 4.736793 GTCATGTGCAGTTTTGAAACTCAG 59.263 41.667 6.16 0.00 45.65 3.35
2849 7288 4.398988 TCATGTGCAGTTTTGAAACTCAGT 59.601 37.500 6.16 0.00 45.65 3.41
2850 7289 4.355543 TGTGCAGTTTTGAAACTCAGTC 57.644 40.909 6.16 0.20 45.65 3.51
2851 7290 3.755905 TGTGCAGTTTTGAAACTCAGTCA 59.244 39.130 6.16 2.40 45.65 3.41
2852 7291 4.398988 TGTGCAGTTTTGAAACTCAGTCAT 59.601 37.500 6.16 0.00 45.65 3.06
2853 7292 5.588246 TGTGCAGTTTTGAAACTCAGTCATA 59.412 36.000 6.16 0.07 45.65 2.15
2854 7293 6.094742 TGTGCAGTTTTGAAACTCAGTCATAA 59.905 34.615 6.16 0.00 45.65 1.90
2855 7294 7.141363 GTGCAGTTTTGAAACTCAGTCATAAT 58.859 34.615 6.16 0.00 45.65 1.28
2856 7295 7.649306 GTGCAGTTTTGAAACTCAGTCATAATT 59.351 33.333 6.16 0.00 45.65 1.40
2857 7296 7.648908 TGCAGTTTTGAAACTCAGTCATAATTG 59.351 33.333 6.16 0.00 45.65 2.32
2858 7297 7.862372 GCAGTTTTGAAACTCAGTCATAATTGA 59.138 33.333 6.16 0.00 45.65 2.57
2861 7300 8.958043 GTTTTGAAACTCAGTCATAATTGACAC 58.042 33.333 8.66 0.00 43.43 3.67
2880 7319 7.520119 TGACACTAGCTTATTATGTTGTTCG 57.480 36.000 0.00 0.00 0.00 3.95
2881 7320 7.317390 TGACACTAGCTTATTATGTTGTTCGA 58.683 34.615 0.00 0.00 0.00 3.71
2882 7321 7.979537 TGACACTAGCTTATTATGTTGTTCGAT 59.020 33.333 0.00 0.00 0.00 3.59
2883 7322 8.354011 ACACTAGCTTATTATGTTGTTCGATC 57.646 34.615 0.00 0.00 0.00 3.69
2884 7323 8.198109 ACACTAGCTTATTATGTTGTTCGATCT 58.802 33.333 0.00 0.00 0.00 2.75
2885 7324 8.695284 CACTAGCTTATTATGTTGTTCGATCTC 58.305 37.037 0.00 0.00 0.00 2.75
2886 7325 8.414003 ACTAGCTTATTATGTTGTTCGATCTCA 58.586 33.333 0.00 0.00 0.00 3.27
2887 7326 7.706281 AGCTTATTATGTTGTTCGATCTCAG 57.294 36.000 0.00 0.00 0.00 3.35
2888 7327 7.268586 AGCTTATTATGTTGTTCGATCTCAGT 58.731 34.615 0.00 0.00 0.00 3.41
2889 7328 8.414003 AGCTTATTATGTTGTTCGATCTCAGTA 58.586 33.333 0.00 0.00 0.00 2.74
2890 7329 9.197694 GCTTATTATGTTGTTCGATCTCAGTAT 57.802 33.333 0.00 0.00 0.00 2.12
2896 7335 8.948631 ATGTTGTTCGATCTCAGTATAACATT 57.051 30.769 0.00 0.00 33.83 2.71
2897 7336 8.771920 TGTTGTTCGATCTCAGTATAACATTT 57.228 30.769 0.00 0.00 0.00 2.32
2898 7337 9.863845 TGTTGTTCGATCTCAGTATAACATTTA 57.136 29.630 0.00 0.00 0.00 1.40
2944 7383 8.533569 TTAGGTTTTCATTTTCTTTCCTCACT 57.466 30.769 0.00 0.00 0.00 3.41
2945 7384 6.809869 AGGTTTTCATTTTCTTTCCTCACTG 58.190 36.000 0.00 0.00 0.00 3.66
2946 7385 6.607198 AGGTTTTCATTTTCTTTCCTCACTGA 59.393 34.615 0.00 0.00 0.00 3.41
2947 7386 7.124147 AGGTTTTCATTTTCTTTCCTCACTGAA 59.876 33.333 0.00 0.00 0.00 3.02
2948 7387 7.436376 GGTTTTCATTTTCTTTCCTCACTGAAG 59.564 37.037 0.00 0.00 0.00 3.02
2949 7388 7.645058 TTTCATTTTCTTTCCTCACTGAAGT 57.355 32.000 0.00 0.00 0.00 3.01
2950 7389 8.746052 TTTCATTTTCTTTCCTCACTGAAGTA 57.254 30.769 0.00 0.00 0.00 2.24
2951 7390 8.746052 TTCATTTTCTTTCCTCACTGAAGTAA 57.254 30.769 0.00 0.00 0.00 2.24
2952 7391 8.746052 TCATTTTCTTTCCTCACTGAAGTAAA 57.254 30.769 0.00 0.00 0.00 2.01
2953 7392 8.621286 TCATTTTCTTTCCTCACTGAAGTAAAC 58.379 33.333 0.00 0.00 0.00 2.01
2954 7393 7.931578 TTTTCTTTCCTCACTGAAGTAAACA 57.068 32.000 0.00 0.00 0.00 2.83
2955 7394 6.920569 TTCTTTCCTCACTGAAGTAAACAC 57.079 37.500 0.00 0.00 0.00 3.32
2956 7395 5.984725 TCTTTCCTCACTGAAGTAAACACA 58.015 37.500 0.00 0.00 0.00 3.72
2957 7396 6.411376 TCTTTCCTCACTGAAGTAAACACAA 58.589 36.000 0.00 0.00 0.00 3.33
2958 7397 6.538742 TCTTTCCTCACTGAAGTAAACACAAG 59.461 38.462 0.00 0.00 0.00 3.16
2959 7398 5.353394 TCCTCACTGAAGTAAACACAAGT 57.647 39.130 0.00 0.00 0.00 3.16
2960 7399 5.357257 TCCTCACTGAAGTAAACACAAGTC 58.643 41.667 0.00 0.00 0.00 3.01
2961 7400 5.105106 TCCTCACTGAAGTAAACACAAGTCA 60.105 40.000 0.00 0.00 0.00 3.41
2962 7401 5.584649 CCTCACTGAAGTAAACACAAGTCAA 59.415 40.000 0.00 0.00 0.00 3.18
2963 7402 6.093495 CCTCACTGAAGTAAACACAAGTCAAA 59.907 38.462 0.00 0.00 0.00 2.69
2964 7403 7.361713 CCTCACTGAAGTAAACACAAGTCAAAA 60.362 37.037 0.00 0.00 0.00 2.44
2965 7404 7.877003 TCACTGAAGTAAACACAAGTCAAAAA 58.123 30.769 0.00 0.00 0.00 1.94
2966 7405 8.519526 TCACTGAAGTAAACACAAGTCAAAAAT 58.480 29.630 0.00 0.00 0.00 1.82
2967 7406 8.586273 CACTGAAGTAAACACAAGTCAAAAATG 58.414 33.333 0.00 0.00 0.00 2.32
2968 7407 8.303876 ACTGAAGTAAACACAAGTCAAAAATGT 58.696 29.630 0.00 0.00 0.00 2.71
2969 7408 9.781834 CTGAAGTAAACACAAGTCAAAAATGTA 57.218 29.630 0.00 0.00 0.00 2.29
2978 7417 9.959749 ACACAAGTCAAAAATGTATTTATTCGT 57.040 25.926 0.00 0.00 0.00 3.85
2991 7430 9.722056 ATGTATTTATTCGTCTCAAAAGAATGC 57.278 29.630 0.75 0.00 36.82 3.56
2992 7431 8.946085 TGTATTTATTCGTCTCAAAAGAATGCT 58.054 29.630 0.75 0.00 36.82 3.79
2993 7432 9.774742 GTATTTATTCGTCTCAAAAGAATGCTT 57.225 29.630 0.75 0.00 36.82 3.91
2995 7434 8.506140 TTTATTCGTCTCAAAAGAATGCTTTG 57.494 30.769 0.00 0.00 43.32 2.77
2996 7435 5.499139 TTCGTCTCAAAAGAATGCTTTGT 57.501 34.783 0.00 0.00 43.32 2.83
2997 7436 5.095691 TCGTCTCAAAAGAATGCTTTGTC 57.904 39.130 0.00 0.00 43.32 3.18
2998 7437 4.024048 TCGTCTCAAAAGAATGCTTTGTCC 60.024 41.667 0.00 0.00 43.32 4.02
2999 7438 4.550422 GTCTCAAAAGAATGCTTTGTCCC 58.450 43.478 0.00 0.00 43.32 4.46
3000 7439 3.573967 TCTCAAAAGAATGCTTTGTCCCC 59.426 43.478 0.00 0.00 43.32 4.81
3001 7440 2.632512 TCAAAAGAATGCTTTGTCCCCC 59.367 45.455 0.00 0.00 43.32 5.40
3002 7441 2.368221 CAAAAGAATGCTTTGTCCCCCA 59.632 45.455 0.00 0.00 43.32 4.96
3003 7442 1.928868 AAGAATGCTTTGTCCCCCAG 58.071 50.000 0.00 0.00 0.00 4.45
3004 7443 0.613012 AGAATGCTTTGTCCCCCAGC 60.613 55.000 0.00 0.00 0.00 4.85
3005 7444 1.607801 GAATGCTTTGTCCCCCAGCC 61.608 60.000 0.00 0.00 32.11 4.85
3006 7445 2.384933 AATGCTTTGTCCCCCAGCCA 62.385 55.000 0.00 0.00 32.11 4.75
3007 7446 2.203625 GCTTTGTCCCCCAGCCAA 60.204 61.111 0.00 0.00 0.00 4.52
3008 7447 1.610379 GCTTTGTCCCCCAGCCAAT 60.610 57.895 0.00 0.00 0.00 3.16
3009 7448 1.891722 GCTTTGTCCCCCAGCCAATG 61.892 60.000 0.00 0.00 0.00 2.82
3010 7449 0.251742 CTTTGTCCCCCAGCCAATGA 60.252 55.000 0.00 0.00 0.00 2.57
3011 7450 0.541764 TTTGTCCCCCAGCCAATGAC 60.542 55.000 0.00 0.00 0.00 3.06
3012 7451 1.724148 TTGTCCCCCAGCCAATGACA 61.724 55.000 0.00 0.00 34.38 3.58
3013 7452 1.307647 GTCCCCCAGCCAATGACAT 59.692 57.895 0.00 0.00 0.00 3.06
3014 7453 0.324645 GTCCCCCAGCCAATGACATT 60.325 55.000 0.00 0.00 0.00 2.71
3015 7454 1.064017 GTCCCCCAGCCAATGACATTA 60.064 52.381 0.00 0.00 0.00 1.90
3016 7455 1.858910 TCCCCCAGCCAATGACATTAT 59.141 47.619 0.00 0.00 0.00 1.28
3017 7456 2.158475 TCCCCCAGCCAATGACATTATC 60.158 50.000 0.00 0.00 0.00 1.75
3018 7457 2.158415 CCCCCAGCCAATGACATTATCT 60.158 50.000 0.00 0.00 0.00 1.98
3019 7458 3.569491 CCCCAGCCAATGACATTATCTT 58.431 45.455 0.00 0.00 0.00 2.40
3020 7459 3.962718 CCCCAGCCAATGACATTATCTTT 59.037 43.478 0.00 0.00 0.00 2.52
3021 7460 4.406649 CCCCAGCCAATGACATTATCTTTT 59.593 41.667 0.00 0.00 0.00 2.27
3022 7461 5.598005 CCCCAGCCAATGACATTATCTTTTA 59.402 40.000 0.00 0.00 0.00 1.52
3023 7462 6.239120 CCCCAGCCAATGACATTATCTTTTAG 60.239 42.308 0.00 0.00 0.00 1.85
3024 7463 6.239120 CCCAGCCAATGACATTATCTTTTAGG 60.239 42.308 0.00 0.00 0.00 2.69
3025 7464 6.547141 CCAGCCAATGACATTATCTTTTAGGA 59.453 38.462 0.00 0.00 0.00 2.94
3026 7465 7.232127 CCAGCCAATGACATTATCTTTTAGGAT 59.768 37.037 0.00 0.00 0.00 3.24
3027 7466 8.295288 CAGCCAATGACATTATCTTTTAGGATC 58.705 37.037 0.00 0.00 0.00 3.36
3028 7467 8.223330 AGCCAATGACATTATCTTTTAGGATCT 58.777 33.333 0.00 0.00 0.00 2.75
3029 7468 9.507329 GCCAATGACATTATCTTTTAGGATCTA 57.493 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 0.542702 CCATGTTGGGCAAGAAGGGT 60.543 55.000 0.00 0.00 32.67 4.34
106 107 7.615403 ACTAAGAGATTGTAGAGCATCAACAA 58.385 34.615 0.00 0.00 37.82 2.83
189 190 9.941664 CTTGTAAATATGCTCCAATCTTAGTTG 57.058 33.333 0.00 0.00 0.00 3.16
210 211 5.927281 ATAGTAAACTCCTTCGGCTTGTA 57.073 39.130 0.00 0.00 0.00 2.41
305 306 1.270358 ACGGAAGACTCTTGTTCAGCC 60.270 52.381 0.00 0.00 0.00 4.85
425 426 2.899256 CCAATCTGGGGAAACAATGTGT 59.101 45.455 0.00 0.00 32.67 3.72
746 747 8.090214 ACCAAACCATCTGATTTTCTTACAATG 58.910 33.333 0.00 0.00 0.00 2.82
768 769 1.006043 TGAAACAGTGGGTCCAACCAA 59.994 47.619 0.00 0.00 43.34 3.67
770 771 1.770294 TTGAAACAGTGGGTCCAACC 58.230 50.000 0.00 0.00 37.60 3.77
779 780 1.812571 AGCGGGCTATTTGAAACAGTG 59.187 47.619 0.00 0.00 0.00 3.66
780 781 2.200373 AGCGGGCTATTTGAAACAGT 57.800 45.000 0.00 0.00 0.00 3.55
781 782 4.083802 GCTATAGCGGGCTATTTGAAACAG 60.084 45.833 17.49 8.76 39.65 3.16
782 783 3.813166 GCTATAGCGGGCTATTTGAAACA 59.187 43.478 17.49 0.00 39.65 2.83
803 804 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
804 805 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
818 819 4.934515 AGACCTTCTGTAAACGCTATAGC 58.065 43.478 15.09 15.09 37.78 2.97
819 820 5.232414 GCAAGACCTTCTGTAAACGCTATAG 59.768 44.000 0.00 0.00 0.00 1.31
820 821 5.107133 GCAAGACCTTCTGTAAACGCTATA 58.893 41.667 0.00 0.00 0.00 1.31
821 822 3.933332 GCAAGACCTTCTGTAAACGCTAT 59.067 43.478 0.00 0.00 0.00 2.97
822 823 3.323243 GCAAGACCTTCTGTAAACGCTA 58.677 45.455 0.00 0.00 0.00 4.26
823 824 2.143925 GCAAGACCTTCTGTAAACGCT 58.856 47.619 0.00 0.00 0.00 5.07
824 825 1.136336 CGCAAGACCTTCTGTAAACGC 60.136 52.381 0.00 0.00 43.02 4.84
825 826 1.136336 GCGCAAGACCTTCTGTAAACG 60.136 52.381 0.30 0.00 43.02 3.60
826 827 2.143925 AGCGCAAGACCTTCTGTAAAC 58.856 47.619 11.47 0.00 43.02 2.01
827 828 2.543777 AGCGCAAGACCTTCTGTAAA 57.456 45.000 11.47 0.00 43.02 2.01
828 829 3.257375 TCTTAGCGCAAGACCTTCTGTAA 59.743 43.478 11.47 0.00 38.39 2.41
829 830 2.823747 TCTTAGCGCAAGACCTTCTGTA 59.176 45.455 11.47 0.00 38.39 2.74
830 831 1.618837 TCTTAGCGCAAGACCTTCTGT 59.381 47.619 11.47 0.00 38.39 3.41
831 832 2.094494 TCTCTTAGCGCAAGACCTTCTG 60.094 50.000 11.47 4.34 38.39 3.02
832 833 2.094442 GTCTCTTAGCGCAAGACCTTCT 60.094 50.000 11.47 0.00 38.39 2.85
833 834 2.094442 AGTCTCTTAGCGCAAGACCTTC 60.094 50.000 21.13 11.40 40.21 3.46
834 835 1.896465 AGTCTCTTAGCGCAAGACCTT 59.104 47.619 21.13 7.87 40.21 3.50
835 836 1.551452 AGTCTCTTAGCGCAAGACCT 58.449 50.000 21.13 14.93 40.21 3.85
836 837 2.371910 AAGTCTCTTAGCGCAAGACC 57.628 50.000 21.13 13.52 40.21 3.85
837 838 2.413453 CCAAAGTCTCTTAGCGCAAGAC 59.587 50.000 11.47 16.26 38.39 3.01
838 839 2.037251 ACCAAAGTCTCTTAGCGCAAGA 59.963 45.455 11.47 15.40 41.10 3.02
839 840 2.413453 GACCAAAGTCTCTTAGCGCAAG 59.587 50.000 11.47 11.67 40.10 4.01
840 841 2.413837 GACCAAAGTCTCTTAGCGCAA 58.586 47.619 11.47 0.50 40.10 4.85
841 842 1.337823 GGACCAAAGTCTCTTAGCGCA 60.338 52.381 11.47 0.00 43.05 6.09
842 843 1.337823 TGGACCAAAGTCTCTTAGCGC 60.338 52.381 0.00 0.00 43.05 5.92
843 844 2.743636 TGGACCAAAGTCTCTTAGCG 57.256 50.000 0.00 0.00 43.05 4.26
844 845 4.134563 TGTTTGGACCAAAGTCTCTTAGC 58.865 43.478 20.14 5.76 43.05 3.09
845 846 6.693315 TTTGTTTGGACCAAAGTCTCTTAG 57.307 37.500 20.14 0.00 43.05 2.18
846 847 6.831353 TCATTTGTTTGGACCAAAGTCTCTTA 59.169 34.615 20.14 1.24 43.05 2.10
847 848 5.656416 TCATTTGTTTGGACCAAAGTCTCTT 59.344 36.000 20.14 1.05 43.05 2.85
848 849 5.200483 TCATTTGTTTGGACCAAAGTCTCT 58.800 37.500 20.14 1.91 43.05 3.10
849 850 5.514274 TCATTTGTTTGGACCAAAGTCTC 57.486 39.130 20.14 8.94 43.05 3.36
850 851 5.186797 TGTTCATTTGTTTGGACCAAAGTCT 59.813 36.000 20.14 2.95 43.05 3.24
851 852 5.415221 TGTTCATTTGTTTGGACCAAAGTC 58.585 37.500 20.14 10.01 42.73 3.01
852 853 5.413309 TGTTCATTTGTTTGGACCAAAGT 57.587 34.783 20.14 4.29 35.45 2.66
853 854 6.148480 TGTTTGTTCATTTGTTTGGACCAAAG 59.852 34.615 20.14 8.25 35.45 2.77
854 855 5.997746 TGTTTGTTCATTTGTTTGGACCAAA 59.002 32.000 15.89 15.89 36.34 3.28
855 856 5.551233 TGTTTGTTCATTTGTTTGGACCAA 58.449 33.333 1.69 1.69 0.00 3.67
856 857 5.152623 TGTTTGTTCATTTGTTTGGACCA 57.847 34.783 0.00 0.00 0.00 4.02
857 858 6.676237 AATGTTTGTTCATTTGTTTGGACC 57.324 33.333 0.00 0.00 34.86 4.46
865 866 9.039500 GCGCTATTTAAAATGTTTGTTCATTTG 57.961 29.630 0.00 0.00 44.10 2.32
866 867 7.949428 CGCGCTATTTAAAATGTTTGTTCATTT 59.051 29.630 5.56 0.00 45.94 2.32
867 868 7.444245 CGCGCTATTTAAAATGTTTGTTCATT 58.556 30.769 5.56 0.00 39.35 2.57
868 869 6.453659 GCGCGCTATTTAAAATGTTTGTTCAT 60.454 34.615 26.67 0.00 0.00 2.57
869 870 5.164138 GCGCGCTATTTAAAATGTTTGTTCA 60.164 36.000 26.67 0.00 0.00 3.18
870 871 5.060446 AGCGCGCTATTTAAAATGTTTGTTC 59.940 36.000 35.79 0.00 0.00 3.18
871 872 4.920927 AGCGCGCTATTTAAAATGTTTGTT 59.079 33.333 35.79 0.18 0.00 2.83
872 873 4.481463 AGCGCGCTATTTAAAATGTTTGT 58.519 34.783 35.79 0.63 0.00 2.83
873 874 6.732181 ATAGCGCGCTATTTAAAATGTTTG 57.268 33.333 40.32 0.00 35.92 2.93
874 875 6.577427 GCTATAGCGCGCTATTTAAAATGTTT 59.423 34.615 46.76 27.75 39.65 2.83
875 876 6.077838 GCTATAGCGCGCTATTTAAAATGTT 58.922 36.000 46.76 28.22 39.65 2.71
876 877 5.618561 GCTATAGCGCGCTATTTAAAATGT 58.381 37.500 46.76 28.88 39.65 2.71
898 899 0.171455 ATAGCGTGCTATAGCGGAGC 59.829 55.000 22.98 22.98 45.83 4.70
899 900 3.326733 CTATAGCGTGCTATAGCGGAG 57.673 52.381 27.04 13.65 46.26 4.63
905 906 7.151976 TCTTTCAAATGCTATAGCGTGCTATA 58.848 34.615 20.02 17.96 45.83 1.31
906 907 5.991606 TCTTTCAAATGCTATAGCGTGCTAT 59.008 36.000 20.02 17.65 45.83 2.97
907 908 5.356426 TCTTTCAAATGCTATAGCGTGCTA 58.644 37.500 20.02 3.73 45.83 3.49
908 909 4.191544 TCTTTCAAATGCTATAGCGTGCT 58.808 39.130 20.02 7.98 45.83 4.40
909 910 4.521943 CTCTTTCAAATGCTATAGCGTGC 58.478 43.478 20.02 0.00 45.83 5.34
910 911 4.572389 ACCTCTTTCAAATGCTATAGCGTG 59.428 41.667 20.02 16.47 45.83 5.34
911 912 4.770795 ACCTCTTTCAAATGCTATAGCGT 58.229 39.130 19.55 16.84 45.83 5.07
912 913 4.212214 GGACCTCTTTCAAATGCTATAGCG 59.788 45.833 19.55 5.67 45.83 4.26
913 914 4.212214 CGGACCTCTTTCAAATGCTATAGC 59.788 45.833 18.18 18.18 42.50 2.97
914 915 4.752101 CCGGACCTCTTTCAAATGCTATAG 59.248 45.833 0.00 0.00 0.00 1.31
915 916 4.703897 CCGGACCTCTTTCAAATGCTATA 58.296 43.478 0.00 0.00 0.00 1.31
916 917 3.545703 CCGGACCTCTTTCAAATGCTAT 58.454 45.455 0.00 0.00 0.00 2.97
917 918 2.939640 GCCGGACCTCTTTCAAATGCTA 60.940 50.000 5.05 0.00 0.00 3.49
918 919 1.826385 CCGGACCTCTTTCAAATGCT 58.174 50.000 0.00 0.00 0.00 3.79
919 920 0.171231 GCCGGACCTCTTTCAAATGC 59.829 55.000 5.05 0.00 0.00 3.56
920 921 0.447801 CGCCGGACCTCTTTCAAATG 59.552 55.000 5.05 0.00 0.00 2.32
921 922 1.305930 GCGCCGGACCTCTTTCAAAT 61.306 55.000 5.05 0.00 0.00 2.32
922 923 1.964373 GCGCCGGACCTCTTTCAAA 60.964 57.895 5.05 0.00 0.00 2.69
923 924 1.537814 TAGCGCCGGACCTCTTTCAA 61.538 55.000 5.05 0.00 0.00 2.69
924 925 1.537814 TTAGCGCCGGACCTCTTTCA 61.538 55.000 5.05 0.00 0.00 2.69
925 926 0.806492 CTTAGCGCCGGACCTCTTTC 60.806 60.000 5.05 0.00 0.00 2.62
926 927 1.218316 CTTAGCGCCGGACCTCTTT 59.782 57.895 5.05 0.00 0.00 2.52
927 928 1.043673 ATCTTAGCGCCGGACCTCTT 61.044 55.000 5.05 0.00 0.00 2.85
928 929 1.455959 ATCTTAGCGCCGGACCTCT 60.456 57.895 5.05 0.00 0.00 3.69
929 930 1.300233 CATCTTAGCGCCGGACCTC 60.300 63.158 5.05 0.00 0.00 3.85
930 931 2.815308 CATCTTAGCGCCGGACCT 59.185 61.111 5.05 1.80 0.00 3.85
931 932 2.925162 AAGCATCTTAGCGCCGGACC 62.925 60.000 5.05 0.00 40.15 4.46
932 933 0.249322 TAAGCATCTTAGCGCCGGAC 60.249 55.000 5.05 0.00 40.15 4.79
933 934 0.032130 CTAAGCATCTTAGCGCCGGA 59.968 55.000 5.05 0.00 40.15 5.14
934 935 1.560860 GCTAAGCATCTTAGCGCCGG 61.561 60.000 18.95 0.00 38.12 6.13
935 936 1.856012 GCTAAGCATCTTAGCGCCG 59.144 57.895 18.95 0.00 38.12 6.46
947 948 1.432270 ATTCCTTGAGCGCGCTAAGC 61.432 55.000 36.69 22.78 43.95 3.09
948 949 0.302890 CATTCCTTGAGCGCGCTAAG 59.697 55.000 36.69 31.19 0.00 2.18
949 950 0.391130 ACATTCCTTGAGCGCGCTAA 60.391 50.000 36.69 26.97 0.00 3.09
950 951 1.083806 CACATTCCTTGAGCGCGCTA 61.084 55.000 36.69 19.58 0.00 4.26
951 952 2.046892 ACATTCCTTGAGCGCGCT 60.047 55.556 37.28 37.28 0.00 5.92
952 953 2.099062 CACATTCCTTGAGCGCGC 59.901 61.111 26.66 26.66 0.00 6.86
953 954 1.298157 TTCCACATTCCTTGAGCGCG 61.298 55.000 0.00 0.00 0.00 6.86
954 955 1.098050 ATTCCACATTCCTTGAGCGC 58.902 50.000 0.00 0.00 0.00 5.92
955 956 1.402968 CCATTCCACATTCCTTGAGCG 59.597 52.381 0.00 0.00 0.00 5.03
956 957 1.135721 GCCATTCCACATTCCTTGAGC 59.864 52.381 0.00 0.00 0.00 4.26
957 958 2.426024 CTGCCATTCCACATTCCTTGAG 59.574 50.000 0.00 0.00 0.00 3.02
958 959 2.449464 CTGCCATTCCACATTCCTTGA 58.551 47.619 0.00 0.00 0.00 3.02
959 960 1.134907 GCTGCCATTCCACATTCCTTG 60.135 52.381 0.00 0.00 0.00 3.61
960 961 1.188863 GCTGCCATTCCACATTCCTT 58.811 50.000 0.00 0.00 0.00 3.36
961 962 0.333993 AGCTGCCATTCCACATTCCT 59.666 50.000 0.00 0.00 0.00 3.36
962 963 0.743097 GAGCTGCCATTCCACATTCC 59.257 55.000 0.00 0.00 0.00 3.01
963 964 0.743097 GGAGCTGCCATTCCACATTC 59.257 55.000 0.00 0.00 36.34 2.67
964 965 0.685458 GGGAGCTGCCATTCCACATT 60.685 55.000 20.97 0.00 38.95 2.71
984 985 4.405680 TCCCACATCGTGATAATCTCAACT 59.594 41.667 0.00 0.00 35.23 3.16
991 992 6.486657 CCATTTAACTCCCACATCGTGATAAT 59.513 38.462 0.00 0.00 35.23 1.28
1002 1003 5.826208 CCCACTATTACCATTTAACTCCCAC 59.174 44.000 0.00 0.00 0.00 4.61
1143 1144 6.742559 TCATCTTCATCCATCTCTGATTCA 57.257 37.500 0.00 0.00 0.00 2.57
1464 1482 6.538945 AATCTGGTAAGAGAGAAGAGGTTC 57.461 41.667 0.00 0.00 35.37 3.62
1525 1543 0.957362 GCAAGGAGAAACTGCAAGCT 59.043 50.000 0.00 0.00 37.60 3.74
1553 1574 5.393461 CCAATGACTTGTAATTCCTTGAGCC 60.393 44.000 2.97 0.00 0.00 4.70
1701 1761 0.915364 GCTTGGTGAGGGAGGAAGAT 59.085 55.000 0.00 0.00 0.00 2.40
1800 1860 4.504097 CACAAAAACTTAAGTTGCTGGAGC 59.496 41.667 21.22 0.00 38.44 4.70
1939 1999 3.818773 GAGACATCTAGCTCTACCAGGTC 59.181 52.174 0.00 0.00 33.71 3.85
1963 2026 4.081030 CTCAGCGTTGCAGCACCG 62.081 66.667 8.18 8.18 40.15 4.94
2022 2085 4.104102 ACCTTGGGTCAGTCTATTTTGACA 59.896 41.667 6.91 0.00 44.23 3.58
2163 5893 2.621338 TGGAAAGAGCAGAGCAATACG 58.379 47.619 0.00 0.00 0.00 3.06
2200 5930 3.920231 AGTCATGCATGTACCACAGAT 57.080 42.857 25.43 4.11 0.00 2.90
2202 5932 3.076621 ACAAGTCATGCATGTACCACAG 58.923 45.455 25.43 14.58 0.00 3.66
2256 6013 9.829507 TTGTGTTGGATTCTCAATTTATGTTTT 57.170 25.926 0.00 0.00 0.00 2.43
2265 6022 7.123098 TGCTGATAATTGTGTTGGATTCTCAAT 59.877 33.333 0.00 0.00 32.74 2.57
2273 6030 5.170021 GCATTTGCTGATAATTGTGTTGGA 58.830 37.500 0.00 0.00 38.21 3.53
2413 6851 8.545229 TGACAATAACCCAAATTTAAATGCAG 57.455 30.769 0.39 0.00 0.00 4.41
2504 6942 5.361857 CCAAAGCCTCATTTATTCCATCACT 59.638 40.000 0.00 0.00 0.00 3.41
2505 6943 5.452356 CCCAAAGCCTCATTTATTCCATCAC 60.452 44.000 0.00 0.00 0.00 3.06
2522 6960 2.991250 TCAGTAGCTCAATCCCAAAGC 58.009 47.619 0.00 0.00 36.27 3.51
2530 6968 8.874156 TGATAACCTCAATATCAGTAGCTCAAT 58.126 33.333 0.00 0.00 35.42 2.57
2564 7003 6.208797 ACTGACAGCAATGTAGTAGTGTAAGA 59.791 38.462 1.25 0.00 0.00 2.10
2565 7004 6.390721 ACTGACAGCAATGTAGTAGTGTAAG 58.609 40.000 1.25 0.00 0.00 2.34
2567 7006 5.977489 ACTGACAGCAATGTAGTAGTGTA 57.023 39.130 1.25 0.00 0.00 2.90
2568 7007 4.873746 ACTGACAGCAATGTAGTAGTGT 57.126 40.909 1.25 0.00 0.00 3.55
2569 7008 5.103000 GGTACTGACAGCAATGTAGTAGTG 58.897 45.833 1.25 0.00 0.00 2.74
2570 7009 4.770531 TGGTACTGACAGCAATGTAGTAGT 59.229 41.667 1.25 0.00 0.00 2.73
2571 7010 5.324784 TGGTACTGACAGCAATGTAGTAG 57.675 43.478 1.25 0.00 0.00 2.57
2572 7011 5.245301 ACTTGGTACTGACAGCAATGTAGTA 59.755 40.000 1.25 0.00 35.52 1.82
2573 7012 4.040461 ACTTGGTACTGACAGCAATGTAGT 59.960 41.667 1.25 0.00 35.52 2.73
2618 7057 2.880443 ACACCTGAATGACAAGGCAAT 58.120 42.857 0.00 0.00 0.00 3.56
2622 7061 3.822735 ACATGAACACCTGAATGACAAGG 59.177 43.478 0.00 0.00 0.00 3.61
2668 7107 7.489757 GCTTTGGACAAAATGTAAACACAAGTA 59.510 33.333 0.00 0.00 0.00 2.24
2737 7176 2.287188 CCTGTGCTGTAAAGTGTTGCAG 60.287 50.000 0.78 0.78 46.81 4.41
2746 7185 6.238347 CGAATATGCATTACCTGTGCTGTAAA 60.238 38.462 3.54 0.00 42.92 2.01
2780 7219 3.631145 ACATGTTGCACACATTCAGAC 57.369 42.857 10.56 0.00 44.40 3.51
2782 7221 4.857799 TGTAACATGTTGCACACATTCAG 58.142 39.130 23.30 4.79 44.40 3.02
2788 7227 5.153513 CCAGTAATGTAACATGTTGCACAC 58.846 41.667 28.27 25.76 37.97 3.82
2804 7243 6.186957 TGACCTTCAATGCATTACCAGTAAT 58.813 36.000 12.53 0.00 36.27 1.89
2805 7244 5.565509 TGACCTTCAATGCATTACCAGTAA 58.434 37.500 12.53 0.00 0.00 2.24
2806 7245 5.172687 TGACCTTCAATGCATTACCAGTA 57.827 39.130 12.53 0.00 0.00 2.74
2807 7246 4.032960 TGACCTTCAATGCATTACCAGT 57.967 40.909 12.53 7.78 0.00 4.00
2808 7247 4.400251 ACATGACCTTCAATGCATTACCAG 59.600 41.667 12.53 8.04 0.00 4.00
2809 7248 4.158209 CACATGACCTTCAATGCATTACCA 59.842 41.667 12.53 4.57 0.00 3.25
2810 7249 4.675510 CACATGACCTTCAATGCATTACC 58.324 43.478 12.53 0.00 0.00 2.85
2811 7250 4.107622 GCACATGACCTTCAATGCATTAC 58.892 43.478 12.53 0.94 40.33 1.89
2812 7251 3.762823 TGCACATGACCTTCAATGCATTA 59.237 39.130 12.53 0.00 43.28 1.90
2813 7252 2.563620 TGCACATGACCTTCAATGCATT 59.436 40.909 5.99 5.99 43.28 3.56
2814 7253 2.165641 CTGCACATGACCTTCAATGCAT 59.834 45.455 15.11 0.00 45.39 3.96
2815 7254 1.542472 CTGCACATGACCTTCAATGCA 59.458 47.619 14.37 14.37 44.80 3.96
2816 7255 1.542915 ACTGCACATGACCTTCAATGC 59.457 47.619 0.00 8.23 40.73 3.56
2817 7256 3.928727 AACTGCACATGACCTTCAATG 57.071 42.857 0.00 0.00 0.00 2.82
2818 7257 4.341806 TCAAAACTGCACATGACCTTCAAT 59.658 37.500 0.00 0.00 0.00 2.57
2819 7258 3.698539 TCAAAACTGCACATGACCTTCAA 59.301 39.130 0.00 0.00 0.00 2.69
2820 7259 3.286353 TCAAAACTGCACATGACCTTCA 58.714 40.909 0.00 0.00 0.00 3.02
2821 7260 3.988379 TCAAAACTGCACATGACCTTC 57.012 42.857 0.00 0.00 0.00 3.46
2822 7261 4.160252 AGTTTCAAAACTGCACATGACCTT 59.840 37.500 7.32 0.00 46.80 3.50
2823 7262 3.701040 AGTTTCAAAACTGCACATGACCT 59.299 39.130 7.32 0.00 46.80 3.85
2824 7263 4.045636 AGTTTCAAAACTGCACATGACC 57.954 40.909 7.32 0.00 46.80 4.02
2854 7293 8.604035 CGAACAACATAATAAGCTAGTGTCAAT 58.396 33.333 0.00 0.00 0.00 2.57
2855 7294 7.815549 TCGAACAACATAATAAGCTAGTGTCAA 59.184 33.333 0.00 0.00 0.00 3.18
2856 7295 7.317390 TCGAACAACATAATAAGCTAGTGTCA 58.683 34.615 0.00 0.00 0.00 3.58
2857 7296 7.751047 TCGAACAACATAATAAGCTAGTGTC 57.249 36.000 0.00 0.00 0.00 3.67
2858 7297 8.198109 AGATCGAACAACATAATAAGCTAGTGT 58.802 33.333 0.00 0.00 0.00 3.55
2859 7298 8.581057 AGATCGAACAACATAATAAGCTAGTG 57.419 34.615 0.00 0.00 0.00 2.74
2860 7299 8.414003 TGAGATCGAACAACATAATAAGCTAGT 58.586 33.333 0.00 0.00 0.00 2.57
2861 7300 8.803201 TGAGATCGAACAACATAATAAGCTAG 57.197 34.615 0.00 0.00 0.00 3.42
2862 7301 8.414003 ACTGAGATCGAACAACATAATAAGCTA 58.586 33.333 0.00 0.00 0.00 3.32
2863 7302 7.268586 ACTGAGATCGAACAACATAATAAGCT 58.731 34.615 0.00 0.00 0.00 3.74
2864 7303 7.470289 ACTGAGATCGAACAACATAATAAGC 57.530 36.000 0.00 0.00 0.00 3.09
2871 7310 8.948631 AATGTTATACTGAGATCGAACAACAT 57.051 30.769 0.00 0.00 36.06 2.71
2872 7311 8.771920 AAATGTTATACTGAGATCGAACAACA 57.228 30.769 0.00 0.00 31.19 3.33
2918 7357 9.147732 AGTGAGGAAAGAAAATGAAAACCTAAT 57.852 29.630 0.00 0.00 0.00 1.73
2919 7358 8.413229 CAGTGAGGAAAGAAAATGAAAACCTAA 58.587 33.333 0.00 0.00 0.00 2.69
2920 7359 7.777910 TCAGTGAGGAAAGAAAATGAAAACCTA 59.222 33.333 0.00 0.00 0.00 3.08
2921 7360 6.607198 TCAGTGAGGAAAGAAAATGAAAACCT 59.393 34.615 0.00 0.00 0.00 3.50
2922 7361 6.805713 TCAGTGAGGAAAGAAAATGAAAACC 58.194 36.000 0.00 0.00 0.00 3.27
2923 7362 7.976175 ACTTCAGTGAGGAAAGAAAATGAAAAC 59.024 33.333 9.56 0.00 0.00 2.43
2924 7363 8.066612 ACTTCAGTGAGGAAAGAAAATGAAAA 57.933 30.769 9.56 0.00 0.00 2.29
2925 7364 7.645058 ACTTCAGTGAGGAAAGAAAATGAAA 57.355 32.000 9.56 0.00 0.00 2.69
2926 7365 8.746052 TTACTTCAGTGAGGAAAGAAAATGAA 57.254 30.769 9.56 0.00 0.00 2.57
2927 7366 8.621286 GTTTACTTCAGTGAGGAAAGAAAATGA 58.379 33.333 9.56 0.00 30.31 2.57
2928 7367 8.405531 TGTTTACTTCAGTGAGGAAAGAAAATG 58.594 33.333 9.56 0.00 30.31 2.32
2929 7368 8.406297 GTGTTTACTTCAGTGAGGAAAGAAAAT 58.594 33.333 9.56 0.00 30.31 1.82
2930 7369 7.392113 TGTGTTTACTTCAGTGAGGAAAGAAAA 59.608 33.333 9.56 0.00 30.31 2.29
2931 7370 6.882140 TGTGTTTACTTCAGTGAGGAAAGAAA 59.118 34.615 9.56 1.56 30.31 2.52
2932 7371 6.411376 TGTGTTTACTTCAGTGAGGAAAGAA 58.589 36.000 9.56 0.00 30.31 2.52
2933 7372 5.984725 TGTGTTTACTTCAGTGAGGAAAGA 58.015 37.500 9.56 1.64 30.31 2.52
2934 7373 6.316390 ACTTGTGTTTACTTCAGTGAGGAAAG 59.684 38.462 9.56 0.00 30.31 2.62
2935 7374 6.177610 ACTTGTGTTTACTTCAGTGAGGAAA 58.822 36.000 9.56 2.84 0.00 3.13
2936 7375 5.741011 ACTTGTGTTTACTTCAGTGAGGAA 58.259 37.500 9.56 0.00 0.00 3.36
2937 7376 5.105106 TGACTTGTGTTTACTTCAGTGAGGA 60.105 40.000 9.56 0.00 0.00 3.71
2938 7377 5.116180 TGACTTGTGTTTACTTCAGTGAGG 58.884 41.667 0.00 0.00 0.00 3.86
2939 7378 6.662414 TTGACTTGTGTTTACTTCAGTGAG 57.338 37.500 0.00 0.00 0.00 3.51
2940 7379 7.441890 TTTTGACTTGTGTTTACTTCAGTGA 57.558 32.000 0.00 0.00 0.00 3.41
2941 7380 8.586273 CATTTTTGACTTGTGTTTACTTCAGTG 58.414 33.333 0.00 0.00 0.00 3.66
2942 7381 8.303876 ACATTTTTGACTTGTGTTTACTTCAGT 58.696 29.630 0.00 0.00 0.00 3.41
2943 7382 8.687824 ACATTTTTGACTTGTGTTTACTTCAG 57.312 30.769 0.00 0.00 0.00 3.02
2952 7391 9.959749 ACGAATAAATACATTTTTGACTTGTGT 57.040 25.926 0.00 0.00 0.00 3.72
2965 7404 9.722056 GCATTCTTTTGAGACGAATAAATACAT 57.278 29.630 0.00 0.00 0.00 2.29
2966 7405 8.946085 AGCATTCTTTTGAGACGAATAAATACA 58.054 29.630 0.00 0.00 0.00 2.29
2967 7406 9.774742 AAGCATTCTTTTGAGACGAATAAATAC 57.225 29.630 0.00 0.00 0.00 1.89
2969 7408 9.132521 CAAAGCATTCTTTTGAGACGAATAAAT 57.867 29.630 0.00 0.00 40.35 1.40
2970 7409 8.134895 ACAAAGCATTCTTTTGAGACGAATAAA 58.865 29.630 4.87 0.00 40.35 1.40
2971 7410 7.648142 ACAAAGCATTCTTTTGAGACGAATAA 58.352 30.769 4.87 0.00 40.35 1.40
2972 7411 7.202016 ACAAAGCATTCTTTTGAGACGAATA 57.798 32.000 4.87 0.00 40.35 1.75
2973 7412 6.076981 ACAAAGCATTCTTTTGAGACGAAT 57.923 33.333 4.87 0.00 40.35 3.34
2974 7413 5.499139 ACAAAGCATTCTTTTGAGACGAA 57.501 34.783 4.87 0.00 40.35 3.85
2975 7414 4.024048 GGACAAAGCATTCTTTTGAGACGA 60.024 41.667 4.87 0.00 40.35 4.20
2976 7415 4.222114 GGACAAAGCATTCTTTTGAGACG 58.778 43.478 4.87 0.00 40.35 4.18
2977 7416 4.550422 GGGACAAAGCATTCTTTTGAGAC 58.450 43.478 4.87 0.00 40.35 3.36
2978 7417 3.573967 GGGGACAAAGCATTCTTTTGAGA 59.426 43.478 4.87 0.00 40.35 3.27
2979 7418 3.306294 GGGGGACAAAGCATTCTTTTGAG 60.306 47.826 4.87 0.00 40.35 3.02
2980 7419 2.632512 GGGGGACAAAGCATTCTTTTGA 59.367 45.455 4.87 0.00 40.35 2.69
2981 7420 2.368221 TGGGGGACAAAGCATTCTTTTG 59.632 45.455 0.00 0.00 40.35 2.44
2982 7421 2.634453 CTGGGGGACAAAGCATTCTTTT 59.366 45.455 0.00 0.00 40.35 2.27
2983 7422 2.250924 CTGGGGGACAAAGCATTCTTT 58.749 47.619 0.00 0.00 42.92 2.52
2984 7423 1.928868 CTGGGGGACAAAGCATTCTT 58.071 50.000 0.00 0.00 0.00 2.52
2985 7424 0.613012 GCTGGGGGACAAAGCATTCT 60.613 55.000 0.00 0.00 40.30 2.40
2986 7425 1.607801 GGCTGGGGGACAAAGCATTC 61.608 60.000 0.00 0.00 41.84 2.67
2987 7426 1.610379 GGCTGGGGGACAAAGCATT 60.610 57.895 0.00 0.00 41.84 3.56
2988 7427 2.037847 GGCTGGGGGACAAAGCAT 59.962 61.111 0.00 0.00 41.84 3.79
2989 7428 3.080158 TTGGCTGGGGGACAAAGCA 62.080 57.895 0.00 0.00 40.46 3.91
2990 7429 2.203625 TTGGCTGGGGGACAAAGC 60.204 61.111 0.00 0.00 40.46 3.51
2994 7433 1.508667 ATGTCATTGGCTGGGGGACA 61.509 55.000 0.00 0.00 42.07 4.02
2995 7434 0.324645 AATGTCATTGGCTGGGGGAC 60.325 55.000 0.00 0.00 0.00 4.46
2996 7435 1.303898 TAATGTCATTGGCTGGGGGA 58.696 50.000 8.39 0.00 0.00 4.81
2997 7436 2.158415 AGATAATGTCATTGGCTGGGGG 60.158 50.000 8.39 0.00 0.00 5.40
2998 7437 3.234234 AGATAATGTCATTGGCTGGGG 57.766 47.619 8.39 0.00 0.00 4.96
2999 7438 5.603170 AAAAGATAATGTCATTGGCTGGG 57.397 39.130 8.39 0.00 0.00 4.45
3000 7439 6.547141 TCCTAAAAGATAATGTCATTGGCTGG 59.453 38.462 8.39 3.62 0.00 4.85
3001 7440 7.572523 TCCTAAAAGATAATGTCATTGGCTG 57.427 36.000 8.39 0.00 0.00 4.85
3002 7441 8.223330 AGATCCTAAAAGATAATGTCATTGGCT 58.777 33.333 8.39 2.64 0.00 4.75
3003 7442 8.401490 AGATCCTAAAAGATAATGTCATTGGC 57.599 34.615 8.39 0.34 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.