Multiple sequence alignment - TraesCS2A01G003700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G003700 chr2A 100.000 7607 0 0 1 7607 2330523 2338129 0.000000e+00 14048.0
1 TraesCS2A01G003700 chr2A 97.508 2849 44 11 1088 3923 751613360 751610526 0.000000e+00 4843.0
2 TraesCS2A01G003700 chr2A 96.911 1813 27 8 2125 3924 751195852 751194056 0.000000e+00 3011.0
3 TraesCS2A01G003700 chr2A 97.233 1012 16 9 1089 2094 751196918 751195913 0.000000e+00 1703.0
4 TraesCS2A01G003700 chr2A 96.845 729 21 2 6880 7606 203894408 203893680 0.000000e+00 1218.0
5 TraesCS2A01G003700 chr2A 80.455 220 23 8 587 790 1870691 1870906 4.760000e-32 150.0
6 TraesCS2A01G003700 chr2A 100.000 30 0 0 584 613 2318148 2318177 1.000000e-03 56.5
7 TraesCS2A01G003700 chr7A 97.712 2841 43 13 1089 3924 715784237 715781414 0.000000e+00 4867.0
8 TraesCS2A01G003700 chr6A 97.961 2796 44 13 1088 3877 11070125 11072913 0.000000e+00 4835.0
9 TraesCS2A01G003700 chr1A 97.465 2801 48 8 1087 3885 554931531 554928752 0.000000e+00 4758.0
10 TraesCS2A01G003700 chr1A 97.235 1989 33 10 1943 3924 544742504 544740531 0.000000e+00 3349.0
11 TraesCS2A01G003700 chr1A 97.582 827 16 4 1087 1911 544743322 544742498 0.000000e+00 1413.0
12 TraesCS2A01G003700 chr1A 97.527 728 18 0 6880 7607 579170846 579170119 0.000000e+00 1245.0
13 TraesCS2A01G003700 chr2D 95.910 2885 100 8 3921 6794 2341834 2344711 0.000000e+00 4658.0
14 TraesCS2A01G003700 chr2D 88.889 1143 102 16 2712 3834 593104931 593103794 0.000000e+00 1384.0
15 TraesCS2A01G003700 chr2D 95.255 274 13 0 815 1088 2341572 2341845 1.170000e-117 435.0
16 TraesCS2A01G003700 chr2D 84.305 223 14 8 597 804 2339662 2339878 1.670000e-46 198.0
17 TraesCS2A01G003700 chr2D 98.837 86 1 0 6711 6796 2344897 2344982 3.680000e-33 154.0
18 TraesCS2A01G003700 chr2D 80.097 206 13 6 629 806 2737834 2737629 2.230000e-25 128.0
19 TraesCS2A01G003700 chr2D 92.727 55 1 1 562 616 2339610 2339661 8.190000e-10 76.8
20 TraesCS2A01G003700 chr2D 93.878 49 3 0 438 486 2738109 2738061 2.940000e-09 75.0
21 TraesCS2A01G003700 chr3B 96.547 2809 86 2 3921 6718 52892910 52890102 0.000000e+00 4639.0
22 TraesCS2A01G003700 chr3B 95.811 740 27 3 6868 7607 459410197 459410932 0.000000e+00 1192.0
23 TraesCS2A01G003700 chr3B 95.436 241 11 0 848 1088 52893139 52892899 1.200000e-102 385.0
24 TraesCS2A01G003700 chr3B 79.401 267 27 17 562 804 52894930 52894668 6.110000e-36 163.0
25 TraesCS2A01G003700 chr3B 83.942 137 17 5 4 140 52895459 52895328 8.010000e-25 126.0
26 TraesCS2A01G003700 chr4A 97.249 2617 34 14 1314 3924 596165658 596163074 0.000000e+00 4399.0
27 TraesCS2A01G003700 chr4A 84.704 2419 336 24 4223 6621 600918291 600915887 0.000000e+00 2386.0
28 TraesCS2A01G003700 chr4A 84.669 2009 293 11 4196 6192 601311418 601313423 0.000000e+00 1989.0
29 TraesCS2A01G003700 chr4A 97.253 728 20 0 6880 7607 596867860 596867133 0.000000e+00 1234.0
30 TraesCS2A01G003700 chr4A 82.036 501 69 13 6238 6722 601313437 601313932 2.560000e-109 407.0
31 TraesCS2A01G003700 chr4A 86.081 273 38 0 816 1088 601309875 601310147 2.080000e-75 294.0
32 TraesCS2A01G003700 chr4A 81.509 265 34 8 824 1088 600919845 600919596 3.600000e-48 204.0
33 TraesCS2A01G003700 chr3A 93.698 2063 94 13 1786 3834 574970833 574968793 0.000000e+00 3057.0
34 TraesCS2A01G003700 chr3A 91.332 473 25 11 1118 1578 574971887 574971419 3.870000e-177 632.0
35 TraesCS2A01G003700 chr3A 86.735 98 3 1 3826 3923 574968781 574968694 4.860000e-17 100.0
36 TraesCS2A01G003700 chr5A 93.583 2057 100 12 1786 3834 41875855 41877887 0.000000e+00 3038.0
37 TraesCS2A01G003700 chr5A 88.144 1164 118 18 1559 2713 41875311 41876463 0.000000e+00 1367.0
38 TraesCS2A01G003700 chr5A 95.604 728 32 0 6880 7607 83782670 83781943 0.000000e+00 1168.0
39 TraesCS2A01G003700 chr5A 91.983 474 22 4 1118 1578 41874799 41875269 0.000000e+00 651.0
40 TraesCS2A01G003700 chr4D 85.281 2507 336 24 4212 6696 3714133 3716628 0.000000e+00 2555.0
41 TraesCS2A01G003700 chr4D 85.758 1980 266 11 4223 6190 3420953 3418978 0.000000e+00 2080.0
42 TraesCS2A01G003700 chr4D 81.614 446 70 7 6238 6675 3418962 3418521 7.260000e-95 359.0
43 TraesCS2A01G003700 chr4D 83.942 274 44 0 815 1088 3421661 3421388 5.850000e-66 263.0
44 TraesCS2A01G003700 chr4D 81.625 283 39 7 816 1088 3712566 3712845 9.940000e-54 222.0
45 TraesCS2A01G003700 chr4B 84.686 2501 352 25 4217 6699 4953464 4950977 0.000000e+00 2468.0
46 TraesCS2A01G003700 chr4B 84.240 2519 353 27 4194 6696 6056975 6059465 0.000000e+00 2412.0
47 TraesCS2A01G003700 chr4B 87.361 1891 229 9 4264 6148 6040231 6042117 0.000000e+00 2159.0
48 TraesCS2A01G003700 chr4B 88.701 1124 104 15 2712 3814 540316981 540318102 0.000000e+00 1351.0
49 TraesCS2A01G003700 chr4B 83.871 465 60 7 6222 6679 6042152 6042608 5.450000e-116 429.0
50 TraesCS2A01G003700 chr4B 79.623 265 39 5 824 1088 4955006 4954757 7.850000e-40 176.0
51 TraesCS2A01G003700 chr4B 78.832 274 40 8 817 1088 6055881 6056138 1.310000e-37 169.0
52 TraesCS2A01G003700 chr3D 87.975 1131 116 12 2717 3828 582049899 582051028 0.000000e+00 1317.0
53 TraesCS2A01G003700 chr2B 87.247 1137 117 21 2717 3828 67274134 67275267 0.000000e+00 1271.0
54 TraesCS2A01G003700 chr6D 96.974 727 21 1 6881 7607 433213483 433214208 0.000000e+00 1219.0
55 TraesCS2A01G003700 chr6D 95.742 728 29 1 6880 7607 12856219 12855494 0.000000e+00 1171.0
56 TraesCS2A01G003700 chr7D 96.291 728 27 0 6880 7607 600257498 600256771 0.000000e+00 1195.0
57 TraesCS2A01G003700 chr5B 96.022 729 27 2 6880 7607 563453983 563454710 0.000000e+00 1184.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G003700 chr2A 2330523 2338129 7606 False 14048.000000 14048 100.000000 1 7607 1 chr2A.!!$F3 7606
1 TraesCS2A01G003700 chr2A 751610526 751613360 2834 True 4843.000000 4843 97.508000 1088 3923 1 chr2A.!!$R2 2835
2 TraesCS2A01G003700 chr2A 751194056 751196918 2862 True 2357.000000 3011 97.072000 1089 3924 2 chr2A.!!$R3 2835
3 TraesCS2A01G003700 chr2A 203893680 203894408 728 True 1218.000000 1218 96.845000 6880 7606 1 chr2A.!!$R1 726
4 TraesCS2A01G003700 chr7A 715781414 715784237 2823 True 4867.000000 4867 97.712000 1089 3924 1 chr7A.!!$R1 2835
5 TraesCS2A01G003700 chr6A 11070125 11072913 2788 False 4835.000000 4835 97.961000 1088 3877 1 chr6A.!!$F1 2789
6 TraesCS2A01G003700 chr1A 554928752 554931531 2779 True 4758.000000 4758 97.465000 1087 3885 1 chr1A.!!$R1 2798
7 TraesCS2A01G003700 chr1A 544740531 544743322 2791 True 2381.000000 3349 97.408500 1087 3924 2 chr1A.!!$R3 2837
8 TraesCS2A01G003700 chr1A 579170119 579170846 727 True 1245.000000 1245 97.527000 6880 7607 1 chr1A.!!$R2 727
9 TraesCS2A01G003700 chr2D 593103794 593104931 1137 True 1384.000000 1384 88.889000 2712 3834 1 chr2D.!!$R1 1122
10 TraesCS2A01G003700 chr2D 2339610 2344982 5372 False 1104.360000 4658 93.406800 562 6796 5 chr2D.!!$F1 6234
11 TraesCS2A01G003700 chr3B 52890102 52895459 5357 True 1328.250000 4639 88.831500 4 6718 4 chr3B.!!$R1 6714
12 TraesCS2A01G003700 chr3B 459410197 459410932 735 False 1192.000000 1192 95.811000 6868 7607 1 chr3B.!!$F1 739
13 TraesCS2A01G003700 chr4A 596163074 596165658 2584 True 4399.000000 4399 97.249000 1314 3924 1 chr4A.!!$R1 2610
14 TraesCS2A01G003700 chr4A 600915887 600919845 3958 True 1295.000000 2386 83.106500 824 6621 2 chr4A.!!$R3 5797
15 TraesCS2A01G003700 chr4A 596867133 596867860 727 True 1234.000000 1234 97.253000 6880 7607 1 chr4A.!!$R2 727
16 TraesCS2A01G003700 chr4A 601309875 601313932 4057 False 896.666667 1989 84.262000 816 6722 3 chr4A.!!$F1 5906
17 TraesCS2A01G003700 chr3A 574968694 574971887 3193 True 1263.000000 3057 90.588333 1118 3923 3 chr3A.!!$R1 2805
18 TraesCS2A01G003700 chr5A 41874799 41877887 3088 False 1685.333333 3038 91.236667 1118 3834 3 chr5A.!!$F1 2716
19 TraesCS2A01G003700 chr5A 83781943 83782670 727 True 1168.000000 1168 95.604000 6880 7607 1 chr5A.!!$R1 727
20 TraesCS2A01G003700 chr4D 3712566 3716628 4062 False 1388.500000 2555 83.453000 816 6696 2 chr4D.!!$F1 5880
21 TraesCS2A01G003700 chr4D 3418521 3421661 3140 True 900.666667 2080 83.771333 815 6675 3 chr4D.!!$R1 5860
22 TraesCS2A01G003700 chr4B 540316981 540318102 1121 False 1351.000000 1351 88.701000 2712 3814 1 chr4B.!!$F1 1102
23 TraesCS2A01G003700 chr4B 4950977 4955006 4029 True 1322.000000 2468 82.154500 824 6699 2 chr4B.!!$R1 5875
24 TraesCS2A01G003700 chr4B 6040231 6042608 2377 False 1294.000000 2159 85.616000 4264 6679 2 chr4B.!!$F2 2415
25 TraesCS2A01G003700 chr4B 6055881 6059465 3584 False 1290.500000 2412 81.536000 817 6696 2 chr4B.!!$F3 5879
26 TraesCS2A01G003700 chr3D 582049899 582051028 1129 False 1317.000000 1317 87.975000 2717 3828 1 chr3D.!!$F1 1111
27 TraesCS2A01G003700 chr2B 67274134 67275267 1133 False 1271.000000 1271 87.247000 2717 3828 1 chr2B.!!$F1 1111
28 TraesCS2A01G003700 chr6D 433213483 433214208 725 False 1219.000000 1219 96.974000 6881 7607 1 chr6D.!!$F1 726
29 TraesCS2A01G003700 chr6D 12855494 12856219 725 True 1171.000000 1171 95.742000 6880 7607 1 chr6D.!!$R1 727
30 TraesCS2A01G003700 chr7D 600256771 600257498 727 True 1195.000000 1195 96.291000 6880 7607 1 chr7D.!!$R1 727
31 TraesCS2A01G003700 chr5B 563453983 563454710 727 False 1184.000000 1184 96.022000 6880 7607 1 chr5B.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
897 2883 0.035439 CCTGGAAAGCCACCATACGT 60.035 55.000 0.00 0.0 39.92 3.57 F
935 2921 0.038744 CAGTCCTGGGGAAGCAACAT 59.961 55.000 0.00 0.0 31.38 2.71 F
2250 4993 2.041966 GACATCGTATACAAGTCGCGG 58.958 52.381 6.13 0.0 0.00 6.46 F
3927 6766 0.108615 ACCGAAGCATTCCTCTCACG 60.109 55.000 0.00 0.0 43.81 4.35 F
3928 6767 0.173481 CCGAAGCATTCCTCTCACGA 59.827 55.000 0.00 0.0 43.81 4.35 F
4015 6854 0.729116 CCTGCGACACCTAATGCTTG 59.271 55.000 0.00 0.0 0.00 4.01 F
5264 9123 0.613012 AATGAACTGGAAGGGCTGGC 60.613 55.000 0.00 0.0 39.30 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 4993 0.575390 CGATAAATGGTCGGACGTGC 59.425 55.000 0.00 0.0 35.55 5.34 R
2779 5528 4.582701 AAATCGTTCAAACTTGGCATGA 57.417 36.364 7.45 0.0 0.00 3.07 R
4170 7009 1.434513 TTGGAATGGGGCCTGTGAGT 61.435 55.000 0.84 0.0 0.00 3.41 R
4822 8678 1.055040 AGTGCACTTGGAAGCTCTCT 58.945 50.000 15.25 0.0 29.44 3.10 R
5264 9123 1.066358 GGAAGAGTTTACTGTCCGGGG 60.066 57.143 0.00 0.0 0.00 5.73 R
5867 9726 1.144708 TCCAGTCCAATTCAGTTGCCA 59.855 47.619 0.00 0.0 36.46 4.92 R
6847 10784 0.109532 TGCAACGAACCTCATGGGAA 59.890 50.000 0.00 0.0 38.76 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.496338 ACACGAAGGGTAAATTTCTCAATC 57.504 37.500 0.00 0.00 0.00 2.67
51 52 9.487790 GGTAAATTTCTCAATCAAACATGGAAA 57.512 29.630 0.00 0.00 0.00 3.13
103 104 9.820725 TTTTTATTATGAATCTGCCATGGAAAG 57.179 29.630 18.40 12.38 0.00 2.62
105 106 9.639563 TTTATTATGAATCTGCCATGGAAAGTA 57.360 29.630 18.40 3.00 0.00 2.24
111 112 6.211184 TGAATCTGCCATGGAAAGTATTTGTT 59.789 34.615 18.40 2.84 39.27 2.83
153 154 8.984891 TTTACATGCATGGAAAAATCTTACAG 57.015 30.769 30.57 1.43 37.65 2.74
159 160 6.209192 TGCATGGAAAAATCTTACAGACATGT 59.791 34.615 0.00 0.00 43.76 3.21
161 162 7.599998 GCATGGAAAAATCTTACAGACATGTTT 59.400 33.333 0.00 0.00 41.01 2.83
162 163 9.132521 CATGGAAAAATCTTACAGACATGTTTC 57.867 33.333 0.00 0.00 41.01 2.78
165 166 9.750125 GGAAAAATCTTACAGACATGTTTCTTT 57.250 29.630 0.00 0.00 41.01 2.52
172 173 8.621286 TCTTACAGACATGTTTCTTTCTTTTCC 58.379 33.333 0.00 0.00 41.01 3.13
173 174 6.773976 ACAGACATGTTTCTTTCTTTTCCA 57.226 33.333 0.00 0.00 35.63 3.53
174 175 7.169158 ACAGACATGTTTCTTTCTTTTCCAA 57.831 32.000 0.00 0.00 35.63 3.53
175 176 7.610865 ACAGACATGTTTCTTTCTTTTCCAAA 58.389 30.769 0.00 0.00 35.63 3.28
176 177 8.093927 ACAGACATGTTTCTTTCTTTTCCAAAA 58.906 29.630 0.00 0.00 35.63 2.44
205 206 9.941325 AAAATTCCATGATATTTTTAGTGCACA 57.059 25.926 21.04 1.84 31.72 4.57
209 210 8.523915 TCCATGATATTTTTAGTGCACATTCT 57.476 30.769 21.04 0.00 0.00 2.40
210 211 8.623903 TCCATGATATTTTTAGTGCACATTCTC 58.376 33.333 21.04 5.13 0.00 2.87
211 212 7.864379 CCATGATATTTTTAGTGCACATTCTCC 59.136 37.037 21.04 0.13 0.00 3.71
212 213 7.936496 TGATATTTTTAGTGCACATTCTCCA 57.064 32.000 21.04 2.84 0.00 3.86
213 214 7.761409 TGATATTTTTAGTGCACATTCTCCAC 58.239 34.615 21.04 4.03 0.00 4.02
214 215 4.846779 TTTTTAGTGCACATTCTCCACC 57.153 40.909 21.04 0.00 0.00 4.61
215 216 3.788227 TTTAGTGCACATTCTCCACCT 57.212 42.857 21.04 0.00 0.00 4.00
216 217 3.788227 TTAGTGCACATTCTCCACCTT 57.212 42.857 21.04 0.00 0.00 3.50
217 218 4.901197 TTAGTGCACATTCTCCACCTTA 57.099 40.909 21.04 0.00 0.00 2.69
218 219 3.788227 AGTGCACATTCTCCACCTTAA 57.212 42.857 21.04 0.00 0.00 1.85
219 220 4.307032 AGTGCACATTCTCCACCTTAAT 57.693 40.909 21.04 0.00 0.00 1.40
220 221 4.666512 AGTGCACATTCTCCACCTTAATT 58.333 39.130 21.04 0.00 0.00 1.40
221 222 5.079643 AGTGCACATTCTCCACCTTAATTT 58.920 37.500 21.04 0.00 0.00 1.82
222 223 5.047802 AGTGCACATTCTCCACCTTAATTTG 60.048 40.000 21.04 0.00 0.00 2.32
223 224 5.048083 GTGCACATTCTCCACCTTAATTTGA 60.048 40.000 13.17 0.00 0.00 2.69
224 225 5.183713 TGCACATTCTCCACCTTAATTTGAG 59.816 40.000 0.00 0.00 0.00 3.02
225 226 5.183904 GCACATTCTCCACCTTAATTTGAGT 59.816 40.000 0.00 0.00 0.00 3.41
226 227 6.374333 GCACATTCTCCACCTTAATTTGAGTA 59.626 38.462 0.00 0.00 0.00 2.59
227 228 7.094377 GCACATTCTCCACCTTAATTTGAGTAA 60.094 37.037 0.00 0.00 0.00 2.24
228 229 8.960591 CACATTCTCCACCTTAATTTGAGTAAT 58.039 33.333 0.00 0.00 0.00 1.89
229 230 9.533831 ACATTCTCCACCTTAATTTGAGTAATT 57.466 29.630 0.00 0.00 39.69 1.40
233 234 9.886132 TCTCCACCTTAATTTGAGTAATTAGAC 57.114 33.333 0.00 0.00 39.29 2.59
234 235 9.110502 CTCCACCTTAATTTGAGTAATTAGACC 57.889 37.037 0.00 0.00 39.29 3.85
235 236 8.607713 TCCACCTTAATTTGAGTAATTAGACCA 58.392 33.333 0.00 0.00 39.29 4.02
236 237 9.408648 CCACCTTAATTTGAGTAATTAGACCAT 57.591 33.333 0.00 0.00 39.29 3.55
238 239 9.408648 ACCTTAATTTGAGTAATTAGACCATGG 57.591 33.333 11.19 11.19 39.29 3.66
239 240 9.408648 CCTTAATTTGAGTAATTAGACCATGGT 57.591 33.333 19.89 19.89 39.29 3.55
246 247 8.792830 TGAGTAATTAGACCATGGTAATAGGT 57.207 34.615 19.80 8.09 38.63 3.08
247 248 8.647796 TGAGTAATTAGACCATGGTAATAGGTG 58.352 37.037 19.80 0.00 35.36 4.00
248 249 8.792830 AGTAATTAGACCATGGTAATAGGTGA 57.207 34.615 19.80 0.00 35.36 4.02
249 250 9.393786 AGTAATTAGACCATGGTAATAGGTGAT 57.606 33.333 19.80 1.52 35.36 3.06
250 251 9.436957 GTAATTAGACCATGGTAATAGGTGATG 57.563 37.037 19.80 0.00 35.36 3.07
251 252 7.872061 ATTAGACCATGGTAATAGGTGATGA 57.128 36.000 19.80 0.00 35.36 2.92
253 254 4.968719 AGACCATGGTAATAGGTGATGACA 59.031 41.667 19.80 0.00 35.36 3.58
259 260 9.130661 CCATGGTAATAGGTGATGACAATTTTA 57.869 33.333 2.57 0.00 0.00 1.52
262 263 9.913310 TGGTAATAGGTGATGACAATTTTATCA 57.087 29.630 0.00 0.00 0.00 2.15
272 273 6.106648 TGACAATTTTATCACCATGGCAAA 57.893 33.333 13.04 4.49 0.00 3.68
274 275 7.845037 TGACAATTTTATCACCATGGCAAATA 58.155 30.769 13.04 4.41 0.00 1.40
275 276 8.316946 TGACAATTTTATCACCATGGCAAATAA 58.683 29.630 13.04 10.48 0.00 1.40
276 277 9.328845 GACAATTTTATCACCATGGCAAATAAT 57.671 29.630 13.04 2.26 0.00 1.28
321 506 9.748708 TTTAGTAATTAGATGATGGCAAAATGC 57.251 29.630 0.00 0.00 44.08 3.56
334 519 4.345271 GCAAAATGCATGGGAAATGTTC 57.655 40.909 0.00 0.00 44.26 3.18
335 520 3.752222 GCAAAATGCATGGGAAATGTTCA 59.248 39.130 0.00 0.00 44.26 3.18
336 521 4.378666 GCAAAATGCATGGGAAATGTTCAC 60.379 41.667 0.00 0.00 44.26 3.18
344 529 2.905085 TGGGAAATGTTCACATGGCAAT 59.095 40.909 0.00 0.00 38.38 3.56
345 530 4.092279 TGGGAAATGTTCACATGGCAATA 58.908 39.130 0.00 0.00 38.38 1.90
348 533 6.114767 GGGAAATGTTCACATGGCAATATTT 58.885 36.000 11.14 11.14 36.56 1.40
349 534 6.598850 GGGAAATGTTCACATGGCAATATTTT 59.401 34.615 12.06 0.00 36.56 1.82
350 535 7.768120 GGGAAATGTTCACATGGCAATATTTTA 59.232 33.333 12.06 0.00 36.56 1.52
351 536 9.160496 GGAAATGTTCACATGGCAATATTTTAA 57.840 29.630 12.06 0.00 36.56 1.52
354 539 7.573916 TGTTCACATGGCAATATTTTAAACG 57.426 32.000 0.00 0.00 0.00 3.60
355 540 7.148641 TGTTCACATGGCAATATTTTAAACGT 58.851 30.769 0.00 0.00 0.00 3.99
357 542 6.682746 TCACATGGCAATATTTTAAACGTGT 58.317 32.000 0.00 0.00 0.00 4.49
358 543 6.804295 TCACATGGCAATATTTTAAACGTGTC 59.196 34.615 0.00 0.00 0.00 3.67
359 544 6.584184 CACATGGCAATATTTTAAACGTGTCA 59.416 34.615 0.00 0.00 0.00 3.58
361 546 7.653713 ACATGGCAATATTTTAAACGTGTCAAA 59.346 29.630 0.00 0.00 0.00 2.69
362 547 8.655092 CATGGCAATATTTTAAACGTGTCAAAT 58.345 29.630 3.50 3.50 0.00 2.32
363 548 8.012151 TGGCAATATTTTAAACGTGTCAAATG 57.988 30.769 7.93 0.00 0.00 2.32
364 549 7.116948 TGGCAATATTTTAAACGTGTCAAATGG 59.883 33.333 7.93 0.43 0.00 3.16
371 556 7.701809 TTTAAACGTGTCAAATGGAAATTCC 57.298 32.000 4.79 4.79 36.96 3.01
387 572 7.619965 TGGAAATTCCAGAAAAAGTGAAAAGT 58.380 30.769 11.23 0.00 42.67 2.66
388 573 8.754080 TGGAAATTCCAGAAAAAGTGAAAAGTA 58.246 29.630 11.23 0.00 42.67 2.24
389 574 9.594478 GGAAATTCCAGAAAAAGTGAAAAGTAA 57.406 29.630 7.23 0.00 36.28 2.24
391 576 9.936759 AAATTCCAGAAAAAGTGAAAAGTAACA 57.063 25.926 0.00 0.00 0.00 2.41
392 577 9.936759 AATTCCAGAAAAAGTGAAAAGTAACAA 57.063 25.926 0.00 0.00 0.00 2.83
393 578 9.936759 ATTCCAGAAAAAGTGAAAAGTAACAAA 57.063 25.926 0.00 0.00 0.00 2.83
394 579 8.980143 TCCAGAAAAAGTGAAAAGTAACAAAG 57.020 30.769 0.00 0.00 0.00 2.77
395 580 8.798402 TCCAGAAAAAGTGAAAAGTAACAAAGA 58.202 29.630 0.00 0.00 0.00 2.52
396 581 9.418045 CCAGAAAAAGTGAAAAGTAACAAAGAA 57.582 29.630 0.00 0.00 0.00 2.52
398 583 9.974980 AGAAAAAGTGAAAAGTAACAAAGAACA 57.025 25.926 0.00 0.00 0.00 3.18
401 586 9.535878 AAAAGTGAAAAGTAACAAAGAACAACA 57.464 25.926 0.00 0.00 0.00 3.33
402 587 9.535878 AAAGTGAAAAGTAACAAAGAACAACAA 57.464 25.926 0.00 0.00 0.00 2.83
403 588 9.705290 AAGTGAAAAGTAACAAAGAACAACAAT 57.295 25.926 0.00 0.00 0.00 2.71
404 589 9.705290 AGTGAAAAGTAACAAAGAACAACAATT 57.295 25.926 0.00 0.00 0.00 2.32
410 595 9.965824 AAGTAACAAAGAACAACAATTATCCTG 57.034 29.630 0.00 0.00 0.00 3.86
411 596 9.131791 AGTAACAAAGAACAACAATTATCCTGT 57.868 29.630 0.00 0.00 0.00 4.00
412 597 9.394477 GTAACAAAGAACAACAATTATCCTGTC 57.606 33.333 0.00 0.00 0.00 3.51
413 598 7.581213 ACAAAGAACAACAATTATCCTGTCA 57.419 32.000 0.00 0.00 0.00 3.58
414 599 8.006298 ACAAAGAACAACAATTATCCTGTCAA 57.994 30.769 0.00 0.00 0.00 3.18
415 600 8.641541 ACAAAGAACAACAATTATCCTGTCAAT 58.358 29.630 0.00 0.00 0.00 2.57
418 603 9.520515 AAGAACAACAATTATCCTGTCAATAGT 57.479 29.630 0.00 0.00 0.00 2.12
419 604 8.950210 AGAACAACAATTATCCTGTCAATAGTG 58.050 33.333 0.00 0.00 0.00 2.74
420 605 7.630242 ACAACAATTATCCTGTCAATAGTGG 57.370 36.000 0.00 0.00 0.00 4.00
421 606 7.402054 ACAACAATTATCCTGTCAATAGTGGA 58.598 34.615 0.00 0.00 0.00 4.02
422 607 7.888021 ACAACAATTATCCTGTCAATAGTGGAA 59.112 33.333 0.00 0.00 31.87 3.53
423 608 7.865706 ACAATTATCCTGTCAATAGTGGAAC 57.134 36.000 0.00 0.00 31.87 3.62
424 609 6.828785 ACAATTATCCTGTCAATAGTGGAACC 59.171 38.462 0.00 0.00 37.80 3.62
425 610 6.575244 ATTATCCTGTCAATAGTGGAACCA 57.425 37.500 0.00 0.00 37.80 3.67
426 611 6.575244 TTATCCTGTCAATAGTGGAACCAT 57.425 37.500 0.00 0.00 37.80 3.55
427 612 7.684317 TTATCCTGTCAATAGTGGAACCATA 57.316 36.000 0.00 0.00 37.80 2.74
428 613 5.353394 TCCTGTCAATAGTGGAACCATAC 57.647 43.478 0.00 0.00 37.80 2.39
429 614 5.030147 TCCTGTCAATAGTGGAACCATACT 58.970 41.667 0.00 0.00 37.80 2.12
430 615 5.487488 TCCTGTCAATAGTGGAACCATACTT 59.513 40.000 0.00 0.00 37.80 2.24
431 616 5.817816 CCTGTCAATAGTGGAACCATACTTC 59.182 44.000 0.00 0.00 37.80 3.01
432 617 6.367374 TGTCAATAGTGGAACCATACTTCA 57.633 37.500 0.00 0.00 37.80 3.02
433 618 6.170506 TGTCAATAGTGGAACCATACTTCAC 58.829 40.000 0.00 0.00 37.80 3.18
434 619 6.170506 GTCAATAGTGGAACCATACTTCACA 58.829 40.000 0.00 0.00 37.80 3.58
435 620 6.823689 GTCAATAGTGGAACCATACTTCACAT 59.176 38.462 0.00 0.00 37.80 3.21
436 621 6.823182 TCAATAGTGGAACCATACTTCACATG 59.177 38.462 0.00 0.00 37.80 3.21
438 623 3.016736 GTGGAACCATACTTCACATGGG 58.983 50.000 6.34 0.00 46.14 4.00
439 624 2.024414 GGAACCATACTTCACATGGGC 58.976 52.381 6.34 0.00 46.14 5.36
440 625 2.620367 GGAACCATACTTCACATGGGCA 60.620 50.000 6.34 0.00 46.14 5.36
441 626 2.128771 ACCATACTTCACATGGGCAC 57.871 50.000 6.34 0.00 46.14 5.01
442 627 1.354031 ACCATACTTCACATGGGCACA 59.646 47.619 0.00 0.00 46.14 4.57
443 628 2.025037 ACCATACTTCACATGGGCACAT 60.025 45.455 0.00 0.00 46.14 3.21
456 641 4.822685 TGGGCACATGAATATTTTGCTT 57.177 36.364 0.00 0.00 33.55 3.91
457 642 5.929058 TGGGCACATGAATATTTTGCTTA 57.071 34.783 0.00 0.00 33.55 3.09
458 643 6.482898 TGGGCACATGAATATTTTGCTTAT 57.517 33.333 0.00 0.00 33.55 1.73
459 644 6.887013 TGGGCACATGAATATTTTGCTTATT 58.113 32.000 0.00 0.00 33.55 1.40
460 645 6.985645 TGGGCACATGAATATTTTGCTTATTC 59.014 34.615 0.00 0.00 36.85 1.75
461 646 6.424812 GGGCACATGAATATTTTGCTTATTCC 59.575 38.462 0.00 0.00 35.92 3.01
462 647 6.424812 GGCACATGAATATTTTGCTTATTCCC 59.575 38.462 0.00 0.00 35.92 3.97
463 648 6.985645 GCACATGAATATTTTGCTTATTCCCA 59.014 34.615 0.00 0.00 35.92 4.37
464 649 7.495279 GCACATGAATATTTTGCTTATTCCCAA 59.505 33.333 0.00 0.00 35.92 4.12
465 650 9.381033 CACATGAATATTTTGCTTATTCCCAAA 57.619 29.630 0.00 0.00 35.92 3.28
466 651 9.603921 ACATGAATATTTTGCTTATTCCCAAAG 57.396 29.630 0.00 0.00 35.92 2.77
467 652 9.603921 CATGAATATTTTGCTTATTCCCAAAGT 57.396 29.630 0.00 0.00 35.92 2.66
532 717 9.865321 ATTGAATGGAAGACATCTTATTTTGTG 57.135 29.630 0.00 0.00 39.40 3.33
533 718 8.408043 TGAATGGAAGACATCTTATTTTGTGT 57.592 30.769 0.00 0.00 39.40 3.72
534 719 8.298854 TGAATGGAAGACATCTTATTTTGTGTG 58.701 33.333 0.00 0.00 39.40 3.82
535 720 6.012658 TGGAAGACATCTTATTTTGTGTGC 57.987 37.500 0.00 0.00 36.11 4.57
537 722 6.040278 TGGAAGACATCTTATTTTGTGTGCAA 59.960 34.615 0.00 0.00 36.11 4.08
542 727 9.577110 AGACATCTTATTTTGTGTGCAATAATG 57.423 29.630 0.00 0.00 34.18 1.90
548 733 9.467258 CTTATTTTGTGTGCAATAATGATAGGG 57.533 33.333 0.00 0.00 34.18 3.53
549 734 4.916983 TTGTGTGCAATAATGATAGGGC 57.083 40.909 0.00 0.00 0.00 5.19
552 737 2.171003 GTGCAATAATGATAGGGCCCC 58.829 52.381 21.43 3.22 0.00 5.80
553 738 1.271871 TGCAATAATGATAGGGCCCCG 60.272 52.381 21.43 0.00 0.00 5.73
556 741 3.761897 CAATAATGATAGGGCCCCGAAA 58.238 45.455 21.43 1.92 0.00 3.46
557 742 4.148838 CAATAATGATAGGGCCCCGAAAA 58.851 43.478 21.43 0.11 0.00 2.29
559 744 3.328535 AATGATAGGGCCCCGAAAAAT 57.671 42.857 21.43 0.00 0.00 1.82
560 745 2.065899 TGATAGGGCCCCGAAAAATG 57.934 50.000 21.43 0.00 0.00 2.32
571 756 2.099098 CCCGAAAAATGTAGTCATGGCC 59.901 50.000 0.00 0.00 34.19 5.36
575 760 0.106719 AAATGTAGTCATGGCCCCGG 60.107 55.000 0.00 0.00 34.19 5.73
576 761 2.624674 AATGTAGTCATGGCCCCGGC 62.625 60.000 0.00 0.00 35.21 6.13
577 762 3.792736 GTAGTCATGGCCCCGGCA 61.793 66.667 8.23 0.00 44.11 5.69
622 831 1.003718 TCCTCTGCTCTCGACGACA 60.004 57.895 0.00 0.00 0.00 4.35
702 917 2.113986 GGGCTGCTGTGTTCCACT 59.886 61.111 0.00 0.00 35.11 4.00
703 918 1.968540 GGGCTGCTGTGTTCCACTC 60.969 63.158 0.00 0.00 35.11 3.51
765 989 2.061220 CTCAGGTCAGCTTCCACCA 58.939 57.895 8.62 0.00 34.80 4.17
804 1033 1.861542 GCTTGCGTGTATGCCCACAA 61.862 55.000 0.00 0.00 34.98 3.33
806 1035 0.536233 TTGCGTGTATGCCCACAAGT 60.536 50.000 3.43 0.00 34.98 3.16
807 1036 0.953471 TGCGTGTATGCCCACAAGTC 60.953 55.000 3.43 0.00 34.98 3.01
808 1037 0.953471 GCGTGTATGCCCACAAGTCA 60.953 55.000 3.43 0.00 34.98 3.41
810 1039 1.875996 CGTGTATGCCCACAAGTCACA 60.876 52.381 0.00 0.00 34.98 3.58
811 1040 2.226330 GTGTATGCCCACAAGTCACAA 58.774 47.619 0.00 0.00 35.38 3.33
812 1041 2.226437 GTGTATGCCCACAAGTCACAAG 59.774 50.000 0.00 0.00 35.38 3.16
813 1042 2.105649 TGTATGCCCACAAGTCACAAGA 59.894 45.455 0.00 0.00 0.00 3.02
846 2832 4.437587 GCAGCAGCACCCCCATCT 62.438 66.667 0.00 0.00 41.58 2.90
896 2882 1.376609 GCCTGGAAAGCCACCATACG 61.377 60.000 0.00 0.00 39.92 3.06
897 2883 0.035439 CCTGGAAAGCCACCATACGT 60.035 55.000 0.00 0.00 39.92 3.57
935 2921 0.038744 CAGTCCTGGGGAAGCAACAT 59.961 55.000 0.00 0.00 31.38 2.71
1196 3188 7.985184 GGGCACGATGGTCATATATTAGAAATA 59.015 37.037 0.00 0.00 0.00 1.40
1379 3375 5.465724 CACTTGTGTTTAGGTAGTTCTGTCC 59.534 44.000 0.00 0.00 0.00 4.02
1647 3720 5.649782 AGATGCATGATTTCTTTTTCCGT 57.350 34.783 2.46 0.00 0.00 4.69
2250 4993 2.041966 GACATCGTATACAAGTCGCGG 58.958 52.381 6.13 0.00 0.00 6.46
2300 5043 4.473444 TGGCTGAGAAAACTCCAGAAAAT 58.527 39.130 0.00 0.00 0.00 1.82
3039 5801 6.627395 ACATGGTGATTTTTCTACACGAAA 57.373 33.333 0.00 0.00 39.76 3.46
3309 6081 6.378564 TGTCCATGTTTTCAGTTTTGTTCCTA 59.621 34.615 0.00 0.00 0.00 2.94
3627 6424 7.588143 TTGTGAATTGGTGTTAAAGTGTTTG 57.412 32.000 0.00 0.00 0.00 2.93
3687 6504 0.685097 TGAGTTAGGCAGCCGAAGTT 59.315 50.000 15.23 3.73 0.00 2.66
3688 6505 1.337823 TGAGTTAGGCAGCCGAAGTTC 60.338 52.381 15.23 12.44 0.00 3.01
3696 6513 0.608640 CAGCCGAAGTTCCTACCAGT 59.391 55.000 0.00 0.00 0.00 4.00
3772 6590 4.511617 TGTTGATTTTCCAGCGCAAATA 57.488 36.364 11.47 0.00 0.00 1.40
3842 6681 3.256631 GGTCCTCCTACGTACAAAACTGA 59.743 47.826 0.00 0.00 0.00 3.41
3924 6763 2.541556 GTGTACCGAAGCATTCCTCTC 58.458 52.381 0.00 0.00 43.81 3.20
3925 6764 2.094182 GTGTACCGAAGCATTCCTCTCA 60.094 50.000 0.00 0.00 43.81 3.27
3926 6765 2.094182 TGTACCGAAGCATTCCTCTCAC 60.094 50.000 0.00 0.00 43.81 3.51
3927 6766 0.108615 ACCGAAGCATTCCTCTCACG 60.109 55.000 0.00 0.00 43.81 4.35
3928 6767 0.173481 CCGAAGCATTCCTCTCACGA 59.827 55.000 0.00 0.00 43.81 4.35
3929 6768 1.554392 CGAAGCATTCCTCTCACGAG 58.446 55.000 0.00 0.00 43.81 4.18
3930 6769 1.135257 CGAAGCATTCCTCTCACGAGT 60.135 52.381 0.00 0.00 43.81 4.18
3931 6770 2.097629 CGAAGCATTCCTCTCACGAGTA 59.902 50.000 0.00 0.00 43.81 2.59
4015 6854 0.729116 CCTGCGACACCTAATGCTTG 59.271 55.000 0.00 0.00 0.00 4.01
4130 6969 3.070302 CCCATCCCTAGTGAACTAAGCTC 59.930 52.174 0.00 0.00 0.00 4.09
4170 7009 7.044798 CCAAGTTAGATTTTTCCAACAACCAA 58.955 34.615 0.00 0.00 0.00 3.67
4497 8353 1.171308 CTGAATTGTGTGCTGGAGGG 58.829 55.000 0.00 0.00 0.00 4.30
4642 8498 5.674496 TCTGAGATGGGGGTTTATCCAAATA 59.326 40.000 0.00 0.00 36.54 1.40
4822 8678 7.490840 TGATCTTTCATCAAACAAGCTTGAAA 58.509 30.769 32.50 18.46 38.75 2.69
5155 9014 7.604549 ACTTAGTGATCTGATCATGCTAGATG 58.395 38.462 22.09 14.43 42.04 2.90
5264 9123 0.613012 AATGAACTGGAAGGGCTGGC 60.613 55.000 0.00 0.00 39.30 4.85
5402 9261 6.183360 GGGGAAAGGAAAGGATACAAAATACG 60.183 42.308 0.00 0.00 41.41 3.06
5568 9427 3.502979 GGGCAAATGTGTTCATGCAAATT 59.497 39.130 0.00 0.00 34.19 1.82
5658 9517 1.929836 GCTAGACTTCCAACATGCGAG 59.070 52.381 0.00 0.00 0.00 5.03
5684 9543 3.319137 TGCAGTGAAGAGGATACACAC 57.681 47.619 0.00 0.00 37.05 3.82
5705 9564 5.045872 CACGATAGAAGATGAGCATTGTGA 58.954 41.667 0.00 0.00 34.33 3.58
5865 9724 5.324697 GCGAAAACACTGAAGGATAATGAC 58.675 41.667 0.00 0.00 0.00 3.06
5867 9726 6.403636 GCGAAAACACTGAAGGATAATGACAT 60.404 38.462 0.00 0.00 0.00 3.06
5888 9747 1.541588 GGCAACTGAATTGGACTGGAC 59.458 52.381 0.00 0.00 38.88 4.02
6081 9940 1.202915 TGGAATCTCACAAGGCTTGCA 60.203 47.619 26.45 12.77 0.00 4.08
6122 9981 6.353404 TGCCCCAGGTAAAGAAAAATAAAG 57.647 37.500 0.00 0.00 0.00 1.85
6300 10178 6.127451 TGACGGAGAAATGTGATGTATACAGT 60.127 38.462 11.91 0.00 0.00 3.55
6377 10255 2.304056 CCCTCTCACTGGCCACCAT 61.304 63.158 0.00 0.00 30.82 3.55
6454 10332 8.190122 CAGATGCTGGAATCACTAGAGATATAC 58.810 40.741 2.89 0.00 0.00 1.47
6513 10391 2.360350 CCATCACGCAGGCCAACT 60.360 61.111 5.01 0.00 0.00 3.16
6542 10420 3.189495 CGTGTCGGTGATGAGCTATCTAT 59.811 47.826 0.00 0.00 36.71 1.98
6598 10476 0.813184 CGCTGGCATCACATTTCCTT 59.187 50.000 0.00 0.00 0.00 3.36
6630 10521 3.949586 TGGCTATGGATGGTGAATTCA 57.050 42.857 3.38 3.38 0.00 2.57
6732 10629 2.551032 GCAAACCTGTAGTAAACCGCTT 59.449 45.455 0.00 0.00 0.00 4.68
6764 10661 7.611467 TGACTTTAACATTGTATGAAGAGGCAT 59.389 33.333 11.42 0.00 0.00 4.40
6773 10670 2.496899 TGAAGAGGCATTTCACTCCC 57.503 50.000 0.29 0.00 34.27 4.30
6775 10672 0.693049 AAGAGGCATTTCACTCCCGT 59.307 50.000 0.00 0.00 34.27 5.28
6783 10680 3.978855 GCATTTCACTCCCGTAAAACAAC 59.021 43.478 0.00 0.00 0.00 3.32
6794 10691 2.400408 CGTAAAACAACGCTGCAATGAC 59.600 45.455 8.44 0.00 35.87 3.06
6812 10749 3.474570 GCCAGTCCTCATCCGCCT 61.475 66.667 0.00 0.00 0.00 5.52
6842 10779 4.715523 GCCCGCCAGGTGCTTGTA 62.716 66.667 0.00 0.00 38.26 2.41
6843 10780 2.272146 CCCGCCAGGTGCTTGTAT 59.728 61.111 0.00 0.00 38.05 2.29
6844 10781 1.378514 CCCGCCAGGTGCTTGTATT 60.379 57.895 0.00 0.00 38.05 1.89
6845 10782 0.965363 CCCGCCAGGTGCTTGTATTT 60.965 55.000 0.00 0.00 38.05 1.40
6846 10783 0.887933 CCGCCAGGTGCTTGTATTTT 59.112 50.000 0.00 0.00 38.05 1.82
6847 10784 1.272212 CCGCCAGGTGCTTGTATTTTT 59.728 47.619 0.00 0.00 38.05 1.94
6865 10802 1.243902 TTTCCCATGAGGTTCGTTGC 58.756 50.000 0.00 0.00 36.75 4.17
6866 10803 0.109532 TTCCCATGAGGTTCGTTGCA 59.890 50.000 0.00 0.00 36.75 4.08
6867 10804 0.605319 TCCCATGAGGTTCGTTGCAC 60.605 55.000 0.00 0.00 36.75 4.57
6868 10805 0.606401 CCCATGAGGTTCGTTGCACT 60.606 55.000 0.00 0.00 0.00 4.40
6869 10806 0.518636 CCATGAGGTTCGTTGCACTG 59.481 55.000 0.00 0.00 0.00 3.66
6870 10807 0.110056 CATGAGGTTCGTTGCACTGC 60.110 55.000 0.00 0.00 0.00 4.40
6871 10808 1.568612 ATGAGGTTCGTTGCACTGCG 61.569 55.000 0.00 0.00 0.00 5.18
6872 10809 1.954146 GAGGTTCGTTGCACTGCGA 60.954 57.895 3.49 3.49 35.17 5.10
6873 10810 2.159272 GAGGTTCGTTGCACTGCGAC 62.159 60.000 11.01 11.01 39.38 5.19
6874 10811 2.248431 GTTCGTTGCACTGCGACC 59.752 61.111 14.71 0.00 39.59 4.79
6875 10812 2.108157 TTCGTTGCACTGCGACCT 59.892 55.556 14.71 0.00 39.59 3.85
6876 10813 0.942410 GTTCGTTGCACTGCGACCTA 60.942 55.000 14.71 1.99 39.59 3.08
6877 10814 0.666274 TTCGTTGCACTGCGACCTAG 60.666 55.000 14.71 2.70 39.59 3.02
7147 11084 5.419542 CATAAACAGGTCTCGATTCTCCAA 58.580 41.667 0.00 0.00 0.00 3.53
7276 11214 1.852067 GACCAAATCACGGCAAGCGT 61.852 55.000 0.00 0.00 0.00 5.07
7286 11224 2.263540 GCAAGCGTTCCGACCCTA 59.736 61.111 0.00 0.00 0.00 3.53
7370 11308 3.118531 ACAAGGAGGATACAAGCCAGAT 58.881 45.455 0.00 0.00 41.41 2.90
7372 11310 3.051940 AGGAGGATACAAGCCAGATGA 57.948 47.619 0.00 0.00 41.41 2.92
7391 11329 6.204301 CAGATGATATTTGGATGACTGACCAC 59.796 42.308 0.00 0.00 35.81 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.096414 CCATGTTTGATTGAGAAATTTACCCTT 58.904 33.333 0.00 0.00 0.00 3.95
24 25 7.610865 TCCATGTTTGATTGAGAAATTTACCC 58.389 34.615 0.00 0.00 0.00 3.69
128 129 8.801299 TCTGTAAGATTTTTCCATGCATGTAAA 58.199 29.630 24.58 18.74 38.67 2.01
130 131 7.936496 TCTGTAAGATTTTTCCATGCATGTA 57.064 32.000 24.58 6.94 38.67 2.29
131 132 6.839124 TCTGTAAGATTTTTCCATGCATGT 57.161 33.333 24.58 5.40 38.67 3.21
148 149 8.287439 TGGAAAAGAAAGAAACATGTCTGTAA 57.713 30.769 0.00 0.00 33.36 2.41
179 180 9.941325 TGTGCACTAAAAATATCATGGAATTTT 57.059 25.926 19.41 11.06 36.98 1.82
182 183 9.754382 GAATGTGCACTAAAAATATCATGGAAT 57.246 29.630 19.41 0.00 0.00 3.01
183 184 8.970020 AGAATGTGCACTAAAAATATCATGGAA 58.030 29.630 19.41 0.00 0.00 3.53
184 185 8.523915 AGAATGTGCACTAAAAATATCATGGA 57.476 30.769 19.41 0.00 0.00 3.41
185 186 7.864379 GGAGAATGTGCACTAAAAATATCATGG 59.136 37.037 19.41 0.00 0.00 3.66
186 187 8.407832 TGGAGAATGTGCACTAAAAATATCATG 58.592 33.333 19.41 0.00 0.00 3.07
187 188 8.408601 GTGGAGAATGTGCACTAAAAATATCAT 58.591 33.333 19.41 0.00 43.96 2.45
188 189 7.148086 GGTGGAGAATGTGCACTAAAAATATCA 60.148 37.037 19.41 3.12 46.46 2.15
189 190 7.067494 AGGTGGAGAATGTGCACTAAAAATATC 59.933 37.037 19.41 4.82 46.46 1.63
190 191 6.891908 AGGTGGAGAATGTGCACTAAAAATAT 59.108 34.615 19.41 0.00 46.46 1.28
192 193 5.079643 AGGTGGAGAATGTGCACTAAAAAT 58.920 37.500 19.41 0.00 46.46 1.82
196 197 3.788227 AAGGTGGAGAATGTGCACTAA 57.212 42.857 19.41 0.00 46.46 2.24
197 198 4.901197 TTAAGGTGGAGAATGTGCACTA 57.099 40.909 19.41 4.84 46.46 2.74
199 200 5.048083 TCAAATTAAGGTGGAGAATGTGCAC 60.048 40.000 10.75 10.75 46.52 4.57
200 201 5.076182 TCAAATTAAGGTGGAGAATGTGCA 58.924 37.500 0.00 0.00 0.00 4.57
201 202 5.183904 ACTCAAATTAAGGTGGAGAATGTGC 59.816 40.000 0.00 0.00 0.00 4.57
209 210 8.607713 TGGTCTAATTACTCAAATTAAGGTGGA 58.392 33.333 0.00 0.00 39.10 4.02
210 211 8.801882 TGGTCTAATTACTCAAATTAAGGTGG 57.198 34.615 0.00 0.00 39.10 4.61
212 213 9.408648 CCATGGTCTAATTACTCAAATTAAGGT 57.591 33.333 2.57 0.00 39.10 3.50
213 214 9.408648 ACCATGGTCTAATTACTCAAATTAAGG 57.591 33.333 13.00 0.00 39.10 2.69
220 221 9.220906 ACCTATTACCATGGTCTAATTACTCAA 57.779 33.333 23.76 6.23 0.00 3.02
221 222 8.647796 CACCTATTACCATGGTCTAATTACTCA 58.352 37.037 23.76 0.00 30.72 3.41
222 223 8.867097 TCACCTATTACCATGGTCTAATTACTC 58.133 37.037 23.76 0.00 30.72 2.59
223 224 8.792830 TCACCTATTACCATGGTCTAATTACT 57.207 34.615 23.76 0.00 30.72 2.24
224 225 9.436957 CATCACCTATTACCATGGTCTAATTAC 57.563 37.037 23.76 0.00 30.72 1.89
225 226 9.387397 TCATCACCTATTACCATGGTCTAATTA 57.613 33.333 23.76 0.00 30.72 1.40
226 227 8.157476 GTCATCACCTATTACCATGGTCTAATT 58.843 37.037 23.76 3.08 30.72 1.40
227 228 7.292356 TGTCATCACCTATTACCATGGTCTAAT 59.708 37.037 23.76 18.75 30.72 1.73
228 229 6.613679 TGTCATCACCTATTACCATGGTCTAA 59.386 38.462 23.76 12.09 30.72 2.10
229 230 6.140377 TGTCATCACCTATTACCATGGTCTA 58.860 40.000 23.76 13.45 30.72 2.59
230 231 4.968719 TGTCATCACCTATTACCATGGTCT 59.031 41.667 23.76 12.98 30.72 3.85
231 232 5.290493 TGTCATCACCTATTACCATGGTC 57.710 43.478 23.76 2.19 30.72 4.02
232 233 5.708736 TTGTCATCACCTATTACCATGGT 57.291 39.130 23.55 23.55 33.87 3.55
233 234 7.587037 AAATTGTCATCACCTATTACCATGG 57.413 36.000 11.19 11.19 0.00 3.66
236 237 9.913310 TGATAAAATTGTCATCACCTATTACCA 57.087 29.630 0.00 0.00 0.00 3.25
245 246 5.750067 GCCATGGTGATAAAATTGTCATCAC 59.250 40.000 14.67 14.50 41.25 3.06
246 247 5.421374 TGCCATGGTGATAAAATTGTCATCA 59.579 36.000 14.67 8.07 42.36 3.07
247 248 5.904941 TGCCATGGTGATAAAATTGTCATC 58.095 37.500 14.67 0.00 30.97 2.92
248 249 5.936187 TGCCATGGTGATAAAATTGTCAT 57.064 34.783 14.67 0.00 30.97 3.06
249 250 5.735285 TTGCCATGGTGATAAAATTGTCA 57.265 34.783 14.67 0.00 0.00 3.58
250 251 8.715191 TTATTTGCCATGGTGATAAAATTGTC 57.285 30.769 14.67 0.00 0.00 3.18
301 486 5.995282 CCATGCATTTTGCCATCATCTAATT 59.005 36.000 0.00 0.00 44.23 1.40
302 487 5.512404 CCCATGCATTTTGCCATCATCTAAT 60.512 40.000 0.00 0.00 44.23 1.73
303 488 4.202274 CCCATGCATTTTGCCATCATCTAA 60.202 41.667 0.00 0.00 44.23 2.10
305 490 2.104111 CCCATGCATTTTGCCATCATCT 59.896 45.455 0.00 0.00 44.23 2.90
309 494 2.695127 TTCCCATGCATTTTGCCATC 57.305 45.000 0.00 0.00 44.23 3.51
320 505 2.896168 CCATGTGAACATTTCCCATGC 58.104 47.619 6.00 0.00 42.05 4.06
321 506 2.234168 TGCCATGTGAACATTTCCCATG 59.766 45.455 4.84 4.84 42.72 3.66
322 507 2.538222 TGCCATGTGAACATTTCCCAT 58.462 42.857 0.00 0.00 33.61 4.00
324 509 3.615224 ATTGCCATGTGAACATTTCCC 57.385 42.857 0.00 0.00 33.61 3.97
325 510 7.614124 AAAATATTGCCATGTGAACATTTCC 57.386 32.000 0.00 0.00 33.61 3.13
328 513 8.655092 CGTTTAAAATATTGCCATGTGAACATT 58.345 29.630 0.00 0.00 33.61 2.71
329 514 7.816995 ACGTTTAAAATATTGCCATGTGAACAT 59.183 29.630 0.00 0.00 36.96 2.71
330 515 7.115520 CACGTTTAAAATATTGCCATGTGAACA 59.884 33.333 0.00 0.00 0.00 3.18
331 516 7.115663 ACACGTTTAAAATATTGCCATGTGAAC 59.884 33.333 12.86 0.00 0.00 3.18
332 517 7.148641 ACACGTTTAAAATATTGCCATGTGAA 58.851 30.769 12.86 0.00 0.00 3.18
333 518 6.682746 ACACGTTTAAAATATTGCCATGTGA 58.317 32.000 12.86 0.00 0.00 3.58
334 519 6.584184 TGACACGTTTAAAATATTGCCATGTG 59.416 34.615 0.00 0.00 0.00 3.21
335 520 6.682746 TGACACGTTTAAAATATTGCCATGT 58.317 32.000 0.00 0.00 0.00 3.21
336 521 7.573916 TTGACACGTTTAAAATATTGCCATG 57.426 32.000 0.00 0.00 0.00 3.66
339 524 7.329717 TCCATTTGACACGTTTAAAATATTGCC 59.670 33.333 0.00 0.00 0.00 4.52
345 530 8.769891 GGAATTTCCATTTGACACGTTTAAAAT 58.230 29.630 10.67 0.00 36.28 1.82
348 533 6.806751 TGGAATTTCCATTTGACACGTTTAA 58.193 32.000 14.24 0.00 42.67 1.52
349 534 6.392625 TGGAATTTCCATTTGACACGTTTA 57.607 33.333 14.24 0.00 42.67 2.01
350 535 5.269505 TGGAATTTCCATTTGACACGTTT 57.730 34.783 14.24 0.00 42.67 3.60
351 536 4.927978 TGGAATTTCCATTTGACACGTT 57.072 36.364 14.24 0.00 42.67 3.99
362 547 7.619965 ACTTTTCACTTTTTCTGGAATTTCCA 58.380 30.769 17.09 17.09 45.98 3.53
363 548 9.594478 TTACTTTTCACTTTTTCTGGAATTTCC 57.406 29.630 8.59 8.59 36.96 3.13
368 553 9.418045 CTTTGTTACTTTTCACTTTTTCTGGAA 57.582 29.630 0.00 0.00 0.00 3.53
369 554 8.798402 TCTTTGTTACTTTTCACTTTTTCTGGA 58.202 29.630 0.00 0.00 0.00 3.86
370 555 8.980143 TCTTTGTTACTTTTCACTTTTTCTGG 57.020 30.769 0.00 0.00 0.00 3.86
372 557 9.974980 TGTTCTTTGTTACTTTTCACTTTTTCT 57.025 25.926 0.00 0.00 0.00 2.52
375 560 9.535878 TGTTGTTCTTTGTTACTTTTCACTTTT 57.464 25.926 0.00 0.00 0.00 2.27
376 561 9.535878 TTGTTGTTCTTTGTTACTTTTCACTTT 57.464 25.926 0.00 0.00 0.00 2.66
377 562 9.705290 ATTGTTGTTCTTTGTTACTTTTCACTT 57.295 25.926 0.00 0.00 0.00 3.16
378 563 9.705290 AATTGTTGTTCTTTGTTACTTTTCACT 57.295 25.926 0.00 0.00 0.00 3.41
384 569 9.965824 CAGGATAATTGTTGTTCTTTGTTACTT 57.034 29.630 0.00 0.00 0.00 2.24
385 570 9.131791 ACAGGATAATTGTTGTTCTTTGTTACT 57.868 29.630 0.00 0.00 0.00 2.24
386 571 9.394477 GACAGGATAATTGTTGTTCTTTGTTAC 57.606 33.333 0.00 0.00 0.00 2.50
387 572 9.126151 TGACAGGATAATTGTTGTTCTTTGTTA 57.874 29.630 0.00 0.00 0.00 2.41
388 573 8.006298 TGACAGGATAATTGTTGTTCTTTGTT 57.994 30.769 0.00 0.00 0.00 2.83
389 574 7.581213 TGACAGGATAATTGTTGTTCTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
392 577 9.520515 ACTATTGACAGGATAATTGTTGTTCTT 57.479 29.630 0.00 0.00 0.00 2.52
393 578 8.950210 CACTATTGACAGGATAATTGTTGTTCT 58.050 33.333 0.00 0.00 0.00 3.01
394 579 8.184192 CCACTATTGACAGGATAATTGTTGTTC 58.816 37.037 0.00 0.00 0.00 3.18
395 580 7.888021 TCCACTATTGACAGGATAATTGTTGTT 59.112 33.333 0.00 0.00 0.00 2.83
396 581 7.402054 TCCACTATTGACAGGATAATTGTTGT 58.598 34.615 0.00 0.00 0.00 3.32
397 582 7.864108 TCCACTATTGACAGGATAATTGTTG 57.136 36.000 0.00 0.00 0.00 3.33
398 583 7.339466 GGTTCCACTATTGACAGGATAATTGTT 59.661 37.037 0.00 0.00 0.00 2.83
399 584 6.828785 GGTTCCACTATTGACAGGATAATTGT 59.171 38.462 0.00 0.00 0.00 2.71
400 585 6.828273 TGGTTCCACTATTGACAGGATAATTG 59.172 38.462 0.00 0.00 0.00 2.32
401 586 6.969043 TGGTTCCACTATTGACAGGATAATT 58.031 36.000 0.00 0.00 0.00 1.40
402 587 6.575244 TGGTTCCACTATTGACAGGATAAT 57.425 37.500 0.00 0.00 0.00 1.28
403 588 6.575244 ATGGTTCCACTATTGACAGGATAA 57.425 37.500 0.00 0.00 0.00 1.75
404 589 6.844388 AGTATGGTTCCACTATTGACAGGATA 59.156 38.462 0.00 0.00 0.00 2.59
405 590 5.667626 AGTATGGTTCCACTATTGACAGGAT 59.332 40.000 0.00 0.00 0.00 3.24
406 591 5.030147 AGTATGGTTCCACTATTGACAGGA 58.970 41.667 0.00 0.00 0.00 3.86
407 592 5.359194 AGTATGGTTCCACTATTGACAGG 57.641 43.478 0.00 0.00 0.00 4.00
408 593 6.313905 GTGAAGTATGGTTCCACTATTGACAG 59.686 42.308 0.00 0.00 0.00 3.51
409 594 6.170506 GTGAAGTATGGTTCCACTATTGACA 58.829 40.000 0.00 0.00 0.00 3.58
410 595 6.170506 TGTGAAGTATGGTTCCACTATTGAC 58.829 40.000 0.00 0.00 0.00 3.18
411 596 6.367374 TGTGAAGTATGGTTCCACTATTGA 57.633 37.500 0.00 0.00 0.00 2.57
412 597 6.038603 CCATGTGAAGTATGGTTCCACTATTG 59.961 42.308 0.00 0.00 40.15 1.90
413 598 6.122277 CCATGTGAAGTATGGTTCCACTATT 58.878 40.000 0.00 0.00 40.15 1.73
414 599 5.397899 CCCATGTGAAGTATGGTTCCACTAT 60.398 44.000 0.00 0.00 42.85 2.12
415 600 4.080582 CCCATGTGAAGTATGGTTCCACTA 60.081 45.833 0.00 0.00 42.85 2.74
416 601 3.308402 CCCATGTGAAGTATGGTTCCACT 60.308 47.826 0.00 0.00 42.85 4.00
417 602 3.016736 CCCATGTGAAGTATGGTTCCAC 58.983 50.000 0.00 0.00 42.85 4.02
418 603 2.620367 GCCCATGTGAAGTATGGTTCCA 60.620 50.000 0.00 0.00 42.85 3.53
419 604 2.024414 GCCCATGTGAAGTATGGTTCC 58.976 52.381 0.00 0.00 42.85 3.62
420 605 2.423538 GTGCCCATGTGAAGTATGGTTC 59.576 50.000 0.00 0.00 42.85 3.62
421 606 2.224992 TGTGCCCATGTGAAGTATGGTT 60.225 45.455 0.00 0.00 42.85 3.67
422 607 1.354031 TGTGCCCATGTGAAGTATGGT 59.646 47.619 0.00 0.00 42.85 3.55
423 608 2.127271 TGTGCCCATGTGAAGTATGG 57.873 50.000 0.00 0.00 43.77 2.74
424 609 3.281158 TCATGTGCCCATGTGAAGTATG 58.719 45.455 9.08 0.00 46.99 2.39
425 610 3.650281 TCATGTGCCCATGTGAAGTAT 57.350 42.857 9.08 0.00 46.99 2.12
426 611 3.431673 TTCATGTGCCCATGTGAAGTA 57.568 42.857 9.08 0.00 46.99 2.24
427 612 2.291209 TTCATGTGCCCATGTGAAGT 57.709 45.000 9.08 0.00 46.99 3.01
428 613 5.524971 AATATTCATGTGCCCATGTGAAG 57.475 39.130 9.08 0.00 46.99 3.02
429 614 5.936187 AAATATTCATGTGCCCATGTGAA 57.064 34.783 9.08 0.00 46.99 3.18
430 615 5.662456 CAAAATATTCATGTGCCCATGTGA 58.338 37.500 9.08 0.23 46.99 3.58
431 616 4.271533 GCAAAATATTCATGTGCCCATGTG 59.728 41.667 9.08 0.00 46.99 3.21
432 617 4.162698 AGCAAAATATTCATGTGCCCATGT 59.837 37.500 9.08 0.00 46.99 3.21
434 619 5.362105 AAGCAAAATATTCATGTGCCCAT 57.638 34.783 8.80 0.00 35.80 4.00
435 620 4.822685 AAGCAAAATATTCATGTGCCCA 57.177 36.364 8.80 0.00 35.80 5.36
436 621 6.424812 GGAATAAGCAAAATATTCATGTGCCC 59.575 38.462 8.14 2.07 40.13 5.36
437 622 6.424812 GGGAATAAGCAAAATATTCATGTGCC 59.575 38.462 8.14 0.00 40.13 5.01
438 623 6.985645 TGGGAATAAGCAAAATATTCATGTGC 59.014 34.615 8.14 0.00 40.13 4.57
439 624 8.945481 TTGGGAATAAGCAAAATATTCATGTG 57.055 30.769 8.14 0.00 40.13 3.21
440 625 9.603921 CTTTGGGAATAAGCAAAATATTCATGT 57.396 29.630 8.14 0.00 40.13 3.21
441 626 9.603921 ACTTTGGGAATAAGCAAAATATTCATG 57.396 29.630 8.14 0.00 40.13 3.07
506 691 9.865321 CACAAAATAAGATGTCTTCCATTCAAT 57.135 29.630 0.00 0.00 37.40 2.57
507 692 8.859090 ACACAAAATAAGATGTCTTCCATTCAA 58.141 29.630 0.00 0.00 37.40 2.69
508 693 8.298854 CACACAAAATAAGATGTCTTCCATTCA 58.701 33.333 0.00 0.00 37.40 2.57
509 694 7.274250 GCACACAAAATAAGATGTCTTCCATTC 59.726 37.037 0.00 0.00 37.40 2.67
510 695 7.092716 GCACACAAAATAAGATGTCTTCCATT 58.907 34.615 0.00 0.00 37.40 3.16
511 696 6.209192 TGCACACAAAATAAGATGTCTTCCAT 59.791 34.615 0.00 0.00 37.40 3.41
512 697 5.534278 TGCACACAAAATAAGATGTCTTCCA 59.466 36.000 0.00 0.00 37.40 3.53
513 698 6.012658 TGCACACAAAATAAGATGTCTTCC 57.987 37.500 0.00 0.00 37.40 3.46
514 699 9.624697 TTATTGCACACAAAATAAGATGTCTTC 57.375 29.630 0.00 0.00 39.77 2.87
516 701 9.577110 CATTATTGCACACAAAATAAGATGTCT 57.423 29.630 0.00 0.00 39.77 3.41
517 702 9.571810 TCATTATTGCACACAAAATAAGATGTC 57.428 29.630 0.00 0.00 39.77 3.06
522 707 9.467258 CCCTATCATTATTGCACACAAAATAAG 57.533 33.333 0.00 0.00 39.77 1.73
523 708 7.925483 GCCCTATCATTATTGCACACAAAATAA 59.075 33.333 0.00 0.00 39.77 1.40
524 709 7.432869 GCCCTATCATTATTGCACACAAAATA 58.567 34.615 0.00 0.00 39.77 1.40
525 710 6.282930 GCCCTATCATTATTGCACACAAAAT 58.717 36.000 0.00 0.00 39.77 1.82
526 711 5.395103 GGCCCTATCATTATTGCACACAAAA 60.395 40.000 0.00 0.00 39.77 2.44
527 712 4.099266 GGCCCTATCATTATTGCACACAAA 59.901 41.667 0.00 0.00 39.77 2.83
528 713 3.636300 GGCCCTATCATTATTGCACACAA 59.364 43.478 0.00 0.00 40.87 3.33
529 714 3.221771 GGCCCTATCATTATTGCACACA 58.778 45.455 0.00 0.00 0.00 3.72
530 715 2.558359 GGGCCCTATCATTATTGCACAC 59.442 50.000 17.04 0.00 0.00 3.82
531 716 2.490718 GGGGCCCTATCATTATTGCACA 60.491 50.000 24.38 0.00 0.00 4.57
532 717 2.171003 GGGGCCCTATCATTATTGCAC 58.829 52.381 24.38 0.00 0.00 4.57
533 718 1.271871 CGGGGCCCTATCATTATTGCA 60.272 52.381 24.38 0.00 0.00 4.08
534 719 1.004277 TCGGGGCCCTATCATTATTGC 59.996 52.381 24.38 0.00 0.00 3.56
535 720 3.433306 TTCGGGGCCCTATCATTATTG 57.567 47.619 24.38 0.00 0.00 1.90
537 722 4.463050 TTTTTCGGGGCCCTATCATTAT 57.537 40.909 24.38 0.00 0.00 1.28
542 727 2.067365 ACATTTTTCGGGGCCCTATC 57.933 50.000 24.38 3.61 0.00 2.08
545 730 0.702316 ACTACATTTTTCGGGGCCCT 59.298 50.000 24.38 0.00 0.00 5.19
546 731 1.100510 GACTACATTTTTCGGGGCCC 58.899 55.000 15.76 15.76 0.00 5.80
547 732 1.828979 TGACTACATTTTTCGGGGCC 58.171 50.000 0.00 0.00 0.00 5.80
548 733 2.099098 CCATGACTACATTTTTCGGGGC 59.901 50.000 0.00 0.00 34.15 5.80
549 734 2.099098 GCCATGACTACATTTTTCGGGG 59.901 50.000 0.00 0.00 34.15 5.73
552 737 2.099098 GGGGCCATGACTACATTTTTCG 59.901 50.000 4.39 0.00 34.15 3.46
553 738 2.099098 CGGGGCCATGACTACATTTTTC 59.901 50.000 4.39 0.00 34.15 2.29
556 741 0.106719 CCGGGGCCATGACTACATTT 60.107 55.000 4.39 0.00 34.15 2.32
557 742 1.531748 CCGGGGCCATGACTACATT 59.468 57.895 4.39 0.00 34.15 2.71
559 744 3.792736 GCCGGGGCCATGACTACA 61.793 66.667 4.39 0.00 34.56 2.74
560 745 3.757248 CTGCCGGGGCCATGACTAC 62.757 68.421 4.39 0.00 41.09 2.73
575 760 3.808218 TTGGGTTGGGCCACTCTGC 62.808 63.158 5.23 0.00 39.65 4.26
576 761 1.903404 GTTGGGTTGGGCCACTCTG 60.903 63.158 5.23 0.00 39.65 3.35
577 762 1.729267 ATGTTGGGTTGGGCCACTCT 61.729 55.000 5.23 0.00 39.65 3.24
696 911 2.683933 GGAGAGGCGGGAGTGGAA 60.684 66.667 0.00 0.00 0.00 3.53
702 917 4.816984 GACGGAGGAGAGGCGGGA 62.817 72.222 0.00 0.00 0.00 5.14
726 950 4.451652 GCGACGCTTGCTTCCAGC 62.452 66.667 13.73 0.00 42.82 4.85
793 1022 2.778299 TCTTGTGACTTGTGGGCATAC 58.222 47.619 0.00 0.00 34.28 2.39
804 1033 2.827921 GGCATGGGAAAATCTTGTGACT 59.172 45.455 0.00 0.00 0.00 3.41
806 1035 2.886913 TGGCATGGGAAAATCTTGTGA 58.113 42.857 0.00 0.00 0.00 3.58
807 1036 3.735820 CGATGGCATGGGAAAATCTTGTG 60.736 47.826 3.81 0.00 0.00 3.33
808 1037 2.428171 CGATGGCATGGGAAAATCTTGT 59.572 45.455 3.81 0.00 0.00 3.16
810 1039 1.410153 GCGATGGCATGGGAAAATCTT 59.590 47.619 3.81 0.00 39.62 2.40
811 1040 1.035139 GCGATGGCATGGGAAAATCT 58.965 50.000 3.81 0.00 39.62 2.40
812 1041 0.746063 TGCGATGGCATGGGAAAATC 59.254 50.000 3.81 0.00 46.21 2.17
813 1042 2.899122 TGCGATGGCATGGGAAAAT 58.101 47.368 3.81 0.00 46.21 1.82
835 2821 2.750657 CCAGGAGAGATGGGGGTGC 61.751 68.421 0.00 0.00 33.94 5.01
935 2921 1.679641 CAGGTGCATGGCCATGTGA 60.680 57.895 39.08 26.58 40.80 3.58
1196 3188 9.794685 CTATACATCGTATACAGCAGATGAATT 57.205 33.333 19.28 9.68 42.04 2.17
1379 3375 3.749226 AGAGCAAGGAAGAAAAGGACAG 58.251 45.455 0.00 0.00 0.00 3.51
1623 3696 7.028962 CACGGAAAAAGAAATCATGCATCTTA 58.971 34.615 0.00 0.00 33.26 2.10
1647 3720 8.515695 AATAAAGAGTCATCTTGAATCATGCA 57.484 30.769 7.58 0.00 45.25 3.96
2250 4993 0.575390 CGATAAATGGTCGGACGTGC 59.425 55.000 0.00 0.00 35.55 5.34
2779 5528 4.582701 AAATCGTTCAAACTTGGCATGA 57.417 36.364 7.45 0.00 0.00 3.07
3526 6320 8.692710 ACATCACTAGTCCAAAACGATCTATTA 58.307 33.333 0.00 0.00 0.00 0.98
3627 6424 4.343609 GCCTAAAGAATTAGTGAAAGCGC 58.656 43.478 0.00 0.00 37.42 5.92
3687 6504 2.112279 AGTTCCAACCACTGGTAGGA 57.888 50.000 0.00 0.00 46.51 2.94
3688 6505 5.454755 CCATATAGTTCCAACCACTGGTAGG 60.455 48.000 0.00 0.00 46.51 3.18
3696 6513 2.849943 ACCAGCCATATAGTTCCAACCA 59.150 45.455 0.00 0.00 0.00 3.67
3705 6522 3.643763 GAACTCACGACCAGCCATATAG 58.356 50.000 0.00 0.00 0.00 1.31
3877 6716 4.383335 CCCTCACAAAGCGTATAAAGGGTA 60.383 45.833 6.18 0.00 37.91 3.69
3878 6717 3.606687 CCTCACAAAGCGTATAAAGGGT 58.393 45.455 0.00 0.00 0.00 4.34
3879 6718 2.943033 CCCTCACAAAGCGTATAAAGGG 59.057 50.000 0.00 0.00 36.53 3.95
3880 6719 2.943033 CCCCTCACAAAGCGTATAAAGG 59.057 50.000 0.00 0.00 0.00 3.11
3881 6720 2.943033 CCCCCTCACAAAGCGTATAAAG 59.057 50.000 0.00 0.00 0.00 1.85
3882 6721 2.993937 CCCCCTCACAAAGCGTATAAA 58.006 47.619 0.00 0.00 0.00 1.40
3883 6722 2.702592 CCCCCTCACAAAGCGTATAA 57.297 50.000 0.00 0.00 0.00 0.98
3928 6767 2.425143 TTGTACGGGAGTCGGATACT 57.575 50.000 0.00 0.00 45.66 2.12
3929 6768 2.620115 TGATTGTACGGGAGTCGGATAC 59.380 50.000 0.00 0.00 45.66 2.24
3930 6769 2.882761 CTGATTGTACGGGAGTCGGATA 59.117 50.000 0.00 0.00 45.66 2.59
3931 6770 1.681793 CTGATTGTACGGGAGTCGGAT 59.318 52.381 0.00 0.00 45.66 4.18
4015 6854 7.961325 TTTCACCAAAGATTTTATTTCCTGC 57.039 32.000 0.00 0.00 0.00 4.85
4130 6969 5.934625 TCTAACTTGGCAAGCTTCTTTAGAG 59.065 40.000 26.45 12.33 0.00 2.43
4170 7009 1.434513 TTGGAATGGGGCCTGTGAGT 61.435 55.000 0.84 0.00 0.00 3.41
4497 8353 7.919091 TCAAATGCAATTAATCTCTTGAGCATC 59.081 33.333 0.00 0.00 40.22 3.91
4642 8498 4.594491 TGAGCTCATATCCATGTACACCAT 59.406 41.667 13.74 0.00 33.57 3.55
4737 8593 4.324176 GGTATTTCCCCGGTAAGGTTGTTA 60.324 45.833 0.00 0.00 38.74 2.41
4822 8678 1.055040 AGTGCACTTGGAAGCTCTCT 58.945 50.000 15.25 0.00 29.44 3.10
4869 8728 1.250840 GCAAATTGTCCCCGAGGCTT 61.251 55.000 0.00 0.00 0.00 4.35
5155 9014 7.588512 AGTTTATTGTGTGAAAGATTCAGAGC 58.411 34.615 0.00 0.00 41.01 4.09
5232 9091 9.144747 CCTTCCAGTTCATTATAAGATACATCG 57.855 37.037 0.00 0.00 0.00 3.84
5264 9123 1.066358 GGAAGAGTTTACTGTCCGGGG 60.066 57.143 0.00 0.00 0.00 5.73
5402 9261 3.947834 AGCAGGAACAATGGCTAATACAC 59.052 43.478 0.00 0.00 34.25 2.90
5658 9517 6.763135 TGTGTATCCTCTTCACTGCAAATATC 59.237 38.462 0.00 0.00 33.82 1.63
5684 9543 5.527033 TCTCACAATGCTCATCTTCTATCG 58.473 41.667 0.00 0.00 0.00 2.92
5705 9564 5.934043 TCACGATTGAACATTGTCTCATTCT 59.066 36.000 0.00 6.38 0.00 2.40
5865 9724 2.094390 CCAGTCCAATTCAGTTGCCATG 60.094 50.000 0.00 0.00 36.46 3.66
5867 9726 1.144708 TCCAGTCCAATTCAGTTGCCA 59.855 47.619 0.00 0.00 36.46 4.92
5888 9747 4.261155 CCAACACAATATGTATCCGCCTTG 60.261 45.833 0.00 0.00 42.31 3.61
6081 9940 1.064389 GCAAGATAGCCTTTGGTCCCT 60.064 52.381 0.00 0.00 31.42 4.20
6122 9981 6.147581 GCCAAAACTACAAAACTACTAAGGC 58.852 40.000 0.00 0.00 0.00 4.35
6256 10134 5.517411 CCGTCACGTTTTCTGTATATGCTAA 59.483 40.000 0.00 0.00 0.00 3.09
6300 10178 3.678529 GCTCCAAAACAAGCACTCCAAAA 60.679 43.478 0.00 0.00 38.42 2.44
6377 10255 1.337703 GCAGGCACAGTTCATTGTTCA 59.662 47.619 0.00 0.00 0.00 3.18
6454 10332 2.733671 CGACAGTGAGCATGCGGTG 61.734 63.158 13.01 10.73 0.00 4.94
6542 10420 7.413328 CGACATGATCTTCACAAGCTTTAATCA 60.413 37.037 0.00 0.69 0.00 2.57
6630 10521 5.503927 AGCAGAGAACAAACCACATGATAT 58.496 37.500 0.00 0.00 0.00 1.63
6756 10653 0.693049 ACGGGAGTGAAATGCCTCTT 59.307 50.000 0.00 0.00 44.82 2.85
6758 10655 2.396590 TTACGGGAGTGAAATGCCTC 57.603 50.000 0.00 0.00 46.80 4.70
6764 10661 2.031930 GCGTTGTTTTACGGGAGTGAAA 59.968 45.455 0.00 0.00 44.59 2.69
6773 10670 2.400408 GTCATTGCAGCGTTGTTTTACG 59.600 45.455 0.00 0.00 44.09 3.18
6775 10672 2.645163 CGTCATTGCAGCGTTGTTTTA 58.355 42.857 0.00 0.00 0.00 1.52
6783 10680 3.372676 GACTGGCGTCATTGCAGCG 62.373 63.158 0.00 0.00 39.98 5.18
6794 10691 4.899239 GGCGGATGAGGACTGGCG 62.899 72.222 0.00 0.00 0.00 5.69
6844 10781 2.035321 GCAACGAACCTCATGGGAAAAA 59.965 45.455 0.00 0.00 38.76 1.94
6845 10782 1.611491 GCAACGAACCTCATGGGAAAA 59.389 47.619 0.00 0.00 38.76 2.29
6846 10783 1.243902 GCAACGAACCTCATGGGAAA 58.756 50.000 0.00 0.00 38.76 3.13
6847 10784 0.109532 TGCAACGAACCTCATGGGAA 59.890 50.000 0.00 0.00 38.76 3.97
6848 10785 0.605319 GTGCAACGAACCTCATGGGA 60.605 55.000 0.00 0.00 38.76 4.37
6849 10786 0.606401 AGTGCAACGAACCTCATGGG 60.606 55.000 0.00 0.00 45.86 4.00
6850 10787 0.518636 CAGTGCAACGAACCTCATGG 59.481 55.000 0.00 0.00 45.86 3.66
6851 10788 0.110056 GCAGTGCAACGAACCTCATG 60.110 55.000 11.09 0.00 45.86 3.07
6852 10789 1.568612 CGCAGTGCAACGAACCTCAT 61.569 55.000 16.83 0.00 45.86 2.90
6853 10790 2.243957 CGCAGTGCAACGAACCTCA 61.244 57.895 16.83 0.00 45.86 3.86
6854 10791 1.954146 TCGCAGTGCAACGAACCTC 60.954 57.895 16.83 0.00 45.86 3.85
6855 10792 2.108157 TCGCAGTGCAACGAACCT 59.892 55.556 16.83 0.00 45.86 3.50
6856 10793 2.248431 GTCGCAGTGCAACGAACC 59.752 61.111 16.83 0.00 45.86 3.62
6857 10794 0.942410 TAGGTCGCAGTGCAACGAAC 60.942 55.000 16.83 13.51 46.19 3.95
6858 10795 0.666274 CTAGGTCGCAGTGCAACGAA 60.666 55.000 16.83 0.00 45.86 3.85
6859 10796 1.080772 CTAGGTCGCAGTGCAACGA 60.081 57.895 16.83 0.97 45.86 3.85
6860 10797 0.458543 ATCTAGGTCGCAGTGCAACG 60.459 55.000 16.83 0.00 45.86 4.10
6861 10798 1.726853 AATCTAGGTCGCAGTGCAAC 58.273 50.000 16.83 6.82 0.00 4.17
6862 10799 2.472695 AAATCTAGGTCGCAGTGCAA 57.527 45.000 16.83 0.00 0.00 4.08
6863 10800 2.472695 AAAATCTAGGTCGCAGTGCA 57.527 45.000 16.83 0.00 0.00 4.57
6864 10801 2.742053 TGAAAAATCTAGGTCGCAGTGC 59.258 45.455 4.58 4.58 0.00 4.40
6865 10802 5.356882 TTTGAAAAATCTAGGTCGCAGTG 57.643 39.130 0.00 0.00 0.00 3.66
6866 10803 6.385649 TTTTTGAAAAATCTAGGTCGCAGT 57.614 33.333 0.00 0.00 0.00 4.40
6867 10804 5.858581 CCTTTTTGAAAAATCTAGGTCGCAG 59.141 40.000 3.28 0.00 0.00 5.18
6868 10805 5.278758 CCCTTTTTGAAAAATCTAGGTCGCA 60.279 40.000 3.28 0.00 0.00 5.10
6869 10806 5.161358 CCCTTTTTGAAAAATCTAGGTCGC 58.839 41.667 3.28 0.00 0.00 5.19
6870 10807 5.709966 CCCCTTTTTGAAAAATCTAGGTCG 58.290 41.667 3.28 0.00 0.00 4.79
6871 10808 5.479306 GCCCCTTTTTGAAAAATCTAGGTC 58.521 41.667 3.28 0.00 0.00 3.85
6872 10809 4.021456 CGCCCCTTTTTGAAAAATCTAGGT 60.021 41.667 3.28 0.00 0.00 3.08
6873 10810 4.494484 CGCCCCTTTTTGAAAAATCTAGG 58.506 43.478 3.28 1.57 0.00 3.02
6874 10811 3.926527 GCGCCCCTTTTTGAAAAATCTAG 59.073 43.478 3.28 0.00 0.00 2.43
6875 10812 3.576550 AGCGCCCCTTTTTGAAAAATCTA 59.423 39.130 2.29 0.00 0.00 1.98
6876 10813 2.368548 AGCGCCCCTTTTTGAAAAATCT 59.631 40.909 2.29 0.00 0.00 2.40
6877 10814 2.766313 AGCGCCCCTTTTTGAAAAATC 58.234 42.857 2.29 0.00 0.00 2.17
7147 11084 5.450137 CGTTTATGGTCCTCTCTACAACGAT 60.450 44.000 0.00 0.00 37.30 3.73
7276 11214 7.398332 AGTTTAGAACTCTTATTAGGGTCGGAA 59.602 37.037 0.00 0.00 37.02 4.30
7280 11218 9.152595 CACAAGTTTAGAACTCTTATTAGGGTC 57.847 37.037 0.00 0.00 41.91 4.46
7370 11308 5.434182 TGTGGTCAGTCATCCAAATATCA 57.566 39.130 0.00 0.00 35.38 2.15
7372 11310 7.379059 TCTATGTGGTCAGTCATCCAAATAT 57.621 36.000 0.00 0.00 34.57 1.28
7391 11329 6.201517 CCAATGTAAATTGGCTCGTTCTATG 58.798 40.000 11.84 0.00 43.81 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.