Multiple sequence alignment - TraesCS2A01G003500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G003500 chr2A 100.000 2336 0 0 1 2336 2316750 2314415 0.000000e+00 4314
1 TraesCS2A01G003500 chr2A 96.429 616 14 4 1727 2336 578443155 578442542 0.000000e+00 1009
2 TraesCS2A01G003500 chr5A 96.850 1365 42 1 2 1365 549334186 549335550 0.000000e+00 2281
3 TraesCS2A01G003500 chr5A 97.541 610 14 1 1727 2336 513683025 513683633 0.000000e+00 1042
4 TraesCS2A01G003500 chr5A 97.068 614 16 2 1723 2336 513676190 513676801 0.000000e+00 1033
5 TraesCS2A01G003500 chr7A 96.703 1365 43 2 2 1364 642026770 642028134 0.000000e+00 2270
6 TraesCS2A01G003500 chr7A 96.519 632 19 3 736 1365 174890042 174889412 0.000000e+00 1042
7 TraesCS2A01G003500 chr7A 96.732 612 14 6 1727 2336 658192117 658191510 0.000000e+00 1014
8 TraesCS2A01G003500 chr7A 96.569 612 15 6 1727 2336 658199098 658198491 0.000000e+00 1009
9 TraesCS2A01G003500 chr1A 96.408 1364 46 2 2 1364 543423797 543422436 0.000000e+00 2244
10 TraesCS2A01G003500 chr1A 95.807 1121 46 1 247 1366 589890412 589891532 0.000000e+00 1808
11 TraesCS2A01G003500 chr1A 95.565 248 11 0 2 249 589881406 589881653 4.680000e-107 398
12 TraesCS2A01G003500 chr6A 95.656 1128 46 3 182 1308 100678612 100679737 0.000000e+00 1808
13 TraesCS2A01G003500 chr6A 96.764 618 16 4 1722 2336 94653606 94654222 0.000000e+00 1027
14 TraesCS2A01G003500 chr6A 96.563 611 19 2 1727 2336 94660600 94661209 0.000000e+00 1011
15 TraesCS2A01G003500 chr6A 96.405 612 20 2 1726 2336 95074096 95073486 0.000000e+00 1007
16 TraesCS2A01G003500 chr1D 95.499 1022 46 0 341 1362 481918578 481919599 0.000000e+00 1633
17 TraesCS2A01G003500 chr1D 95.772 615 25 1 756 1370 446279290 446279903 0.000000e+00 990
18 TraesCS2A01G003500 chr1D 94.783 345 18 0 2 346 481901948 481902292 2.640000e-149 538
19 TraesCS2A01G003500 chr1D 90.909 143 8 2 1363 1500 468307037 468306895 1.100000e-43 187
20 TraesCS2A01G003500 chr7B 94.019 719 30 6 331 1049 674073809 674073104 0.000000e+00 1077
21 TraesCS2A01G003500 chr7B 90.210 143 9 4 1363 1500 740816 740674 5.130000e-42 182
22 TraesCS2A01G003500 chrUn 96.417 614 16 5 1727 2336 81455175 81455786 0.000000e+00 1007
23 TraesCS2A01G003500 chr2B 95.550 382 17 0 983 1364 152714855 152714474 1.530000e-171 612
24 TraesCS2A01G003500 chr3D 96.429 224 6 1 1505 1726 614572322 614572099 3.670000e-98 368
25 TraesCS2A01G003500 chr3D 95.982 224 7 1 1505 1726 614547640 614547417 1.710000e-96 363
26 TraesCS2A01G003500 chr3D 90.288 278 19 6 1505 1776 138831811 138831536 7.940000e-95 357
27 TraesCS2A01G003500 chr3D 89.510 143 10 2 1363 1500 565875482 565875340 2.390000e-40 176
28 TraesCS2A01G003500 chr3D 87.413 143 13 3 1363 1500 118438759 118438617 2.400000e-35 159
29 TraesCS2A01G003500 chr5D 95.595 227 8 1 1502 1726 340526446 340526672 1.710000e-96 363
30 TraesCS2A01G003500 chr3B 95.595 227 8 1 1502 1726 346665418 346665644 1.710000e-96 363
31 TraesCS2A01G003500 chr3B 95.595 227 8 1 1502 1726 376211774 376212000 1.710000e-96 363
32 TraesCS2A01G003500 chr3B 88.112 143 12 4 1363 1500 164470803 164470945 5.160000e-37 165
33 TraesCS2A01G003500 chr3B 88.112 143 12 2 1363 1500 164489951 164490093 5.160000e-37 165
34 TraesCS2A01G003500 chr2D 95.595 227 8 1 1502 1726 198282320 198282546 1.710000e-96 363
35 TraesCS2A01G003500 chr2D 94.118 238 9 4 1491 1726 182895775 182896009 7.940000e-95 357
36 TraesCS2A01G003500 chr2D 90.210 143 9 2 1363 1500 525499851 525499709 5.130000e-42 182
37 TraesCS2A01G003500 chr4D 95.536 224 8 1 1505 1726 76739346 76739123 7.940000e-95 357
38 TraesCS2A01G003500 chr7D 90.909 143 8 2 1363 1500 333709751 333709609 1.100000e-43 187
39 TraesCS2A01G003500 chr6D 89.510 143 10 3 1363 1500 6984217 6984359 2.390000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G003500 chr2A 2314415 2316750 2335 True 4314 4314 100.000 1 2336 1 chr2A.!!$R1 2335
1 TraesCS2A01G003500 chr2A 578442542 578443155 613 True 1009 1009 96.429 1727 2336 1 chr2A.!!$R2 609
2 TraesCS2A01G003500 chr5A 549334186 549335550 1364 False 2281 2281 96.850 2 1365 1 chr5A.!!$F3 1363
3 TraesCS2A01G003500 chr5A 513683025 513683633 608 False 1042 1042 97.541 1727 2336 1 chr5A.!!$F2 609
4 TraesCS2A01G003500 chr5A 513676190 513676801 611 False 1033 1033 97.068 1723 2336 1 chr5A.!!$F1 613
5 TraesCS2A01G003500 chr7A 642026770 642028134 1364 False 2270 2270 96.703 2 1364 1 chr7A.!!$F1 1362
6 TraesCS2A01G003500 chr7A 174889412 174890042 630 True 1042 1042 96.519 736 1365 1 chr7A.!!$R1 629
7 TraesCS2A01G003500 chr7A 658191510 658192117 607 True 1014 1014 96.732 1727 2336 1 chr7A.!!$R2 609
8 TraesCS2A01G003500 chr7A 658198491 658199098 607 True 1009 1009 96.569 1727 2336 1 chr7A.!!$R3 609
9 TraesCS2A01G003500 chr1A 543422436 543423797 1361 True 2244 2244 96.408 2 1364 1 chr1A.!!$R1 1362
10 TraesCS2A01G003500 chr1A 589890412 589891532 1120 False 1808 1808 95.807 247 1366 1 chr1A.!!$F2 1119
11 TraesCS2A01G003500 chr6A 100678612 100679737 1125 False 1808 1808 95.656 182 1308 1 chr6A.!!$F3 1126
12 TraesCS2A01G003500 chr6A 94653606 94654222 616 False 1027 1027 96.764 1722 2336 1 chr6A.!!$F1 614
13 TraesCS2A01G003500 chr6A 94660600 94661209 609 False 1011 1011 96.563 1727 2336 1 chr6A.!!$F2 609
14 TraesCS2A01G003500 chr6A 95073486 95074096 610 True 1007 1007 96.405 1726 2336 1 chr6A.!!$R1 610
15 TraesCS2A01G003500 chr1D 481918578 481919599 1021 False 1633 1633 95.499 341 1362 1 chr1D.!!$F3 1021
16 TraesCS2A01G003500 chr1D 446279290 446279903 613 False 990 990 95.772 756 1370 1 chr1D.!!$F1 614
17 TraesCS2A01G003500 chr7B 674073104 674073809 705 True 1077 1077 94.019 331 1049 1 chr7B.!!$R2 718
18 TraesCS2A01G003500 chrUn 81455175 81455786 611 False 1007 1007 96.417 1727 2336 1 chrUn.!!$F1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
586 587 0.987294 CCAGGAGGTGATTGAGTGGT 59.013 55.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 1724 0.034477 ACGTTCCCCAACATCCATCC 60.034 55.0 0.0 0.0 32.14 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 1.570501 TCCTTCAAGGCTGCCCATTAT 59.429 47.619 16.57 0.00 34.61 1.28
249 250 1.152398 GGCATGGCATCCCTCCAAT 60.152 57.895 15.47 0.00 37.13 3.16
329 330 9.362151 TGAAAGTAAAGTGGAAATAGGAAACAT 57.638 29.630 0.00 0.00 0.00 2.71
583 584 2.183679 GTCTCCAGGAGGTGATTGAGT 58.816 52.381 17.10 0.00 39.43 3.41
586 587 0.987294 CCAGGAGGTGATTGAGTGGT 59.013 55.000 0.00 0.00 0.00 4.16
600 601 1.811266 GTGGTGATGCGCTGTCGAT 60.811 57.895 9.73 0.00 38.10 3.59
785 786 6.884832 ACCAAATTGTTCTATCTATCCGTGA 58.115 36.000 0.00 0.00 0.00 4.35
836 837 7.072647 GCTACTAGTTCTGCAAAAGAAAAGAC 58.927 38.462 0.00 0.00 46.51 3.01
843 844 3.516615 TGCAAAAGAAAAGACAAACCCG 58.483 40.909 0.00 0.00 0.00 5.28
1038 1040 4.456566 GCACTCCGGTTTGGTTTAAATCTA 59.543 41.667 0.00 0.00 39.52 1.98
1090 1093 5.518848 TGTTAACTCCGACAGTTTAGACA 57.481 39.130 7.22 6.07 43.38 3.41
1230 1235 2.019249 GCTAATGCTGTGGCTGATGAA 58.981 47.619 0.00 0.00 39.59 2.57
1302 1307 1.628340 CCGGATGCCATCATACCCTTA 59.372 52.381 7.06 0.00 31.96 2.69
1388 1393 8.783833 AGTATATATACATTTGCAAGAGCTGG 57.216 34.615 22.00 0.00 37.41 4.85
1389 1394 7.826252 AGTATATATACATTTGCAAGAGCTGGG 59.174 37.037 22.00 0.00 37.41 4.45
1390 1395 2.877097 TACATTTGCAAGAGCTGGGA 57.123 45.000 0.00 0.00 42.74 4.37
1391 1396 1.999648 ACATTTGCAAGAGCTGGGAA 58.000 45.000 0.00 0.00 42.74 3.97
1392 1397 1.891150 ACATTTGCAAGAGCTGGGAAG 59.109 47.619 0.00 0.00 42.74 3.46
1393 1398 2.165167 CATTTGCAAGAGCTGGGAAGA 58.835 47.619 0.00 0.00 42.74 2.87
1394 1399 1.901591 TTTGCAAGAGCTGGGAAGAG 58.098 50.000 0.00 0.00 42.74 2.85
1395 1400 0.037303 TTGCAAGAGCTGGGAAGAGG 59.963 55.000 0.00 0.00 42.74 3.69
1396 1401 1.130054 TGCAAGAGCTGGGAAGAGGT 61.130 55.000 0.00 0.00 42.74 3.85
1397 1402 0.676151 GCAAGAGCTGGGAAGAGGTG 60.676 60.000 0.00 0.00 37.91 4.00
1398 1403 0.689623 CAAGAGCTGGGAAGAGGTGT 59.310 55.000 0.00 0.00 0.00 4.16
1399 1404 0.980423 AAGAGCTGGGAAGAGGTGTC 59.020 55.000 0.00 0.00 0.00 3.67
1400 1405 0.116143 AGAGCTGGGAAGAGGTGTCT 59.884 55.000 0.00 0.00 32.81 3.41
1401 1406 0.248843 GAGCTGGGAAGAGGTGTCTG 59.751 60.000 0.00 0.00 31.37 3.51
1402 1407 0.472734 AGCTGGGAAGAGGTGTCTGT 60.473 55.000 0.00 0.00 31.37 3.41
1403 1408 0.398318 GCTGGGAAGAGGTGTCTGTT 59.602 55.000 0.00 0.00 31.37 3.16
1404 1409 1.609320 GCTGGGAAGAGGTGTCTGTTC 60.609 57.143 0.00 0.00 41.10 3.18
1405 1410 1.694150 CTGGGAAGAGGTGTCTGTTCA 59.306 52.381 5.80 0.00 42.90 3.18
1406 1411 1.694150 TGGGAAGAGGTGTCTGTTCAG 59.306 52.381 5.80 0.00 42.90 3.02
1407 1412 1.971357 GGGAAGAGGTGTCTGTTCAGA 59.029 52.381 0.00 0.00 42.90 3.27
1408 1413 2.028567 GGGAAGAGGTGTCTGTTCAGAG 60.029 54.545 2.53 0.00 42.90 3.35
1409 1414 2.028567 GGAAGAGGTGTCTGTTCAGAGG 60.029 54.545 2.53 0.00 42.90 3.69
1410 1415 0.972883 AGAGGTGTCTGTTCAGAGGC 59.027 55.000 2.53 0.00 0.00 4.70
1411 1416 0.681733 GAGGTGTCTGTTCAGAGGCA 59.318 55.000 2.53 0.00 0.00 4.75
1412 1417 1.277557 GAGGTGTCTGTTCAGAGGCAT 59.722 52.381 2.53 0.00 28.28 4.40
1413 1418 1.277557 AGGTGTCTGTTCAGAGGCATC 59.722 52.381 2.53 0.00 28.28 3.91
1414 1419 1.677217 GGTGTCTGTTCAGAGGCATCC 60.677 57.143 2.53 1.22 28.28 3.51
1415 1420 0.615331 TGTCTGTTCAGAGGCATCCC 59.385 55.000 2.53 0.00 0.00 3.85
1416 1421 0.908198 GTCTGTTCAGAGGCATCCCT 59.092 55.000 2.53 0.00 46.74 4.20
1426 1431 1.799933 AGGCATCCCTCTAGAACAGG 58.200 55.000 0.00 0.00 36.46 4.00
1427 1432 1.008938 AGGCATCCCTCTAGAACAGGT 59.991 52.381 0.00 0.00 36.46 4.00
1428 1433 1.139853 GGCATCCCTCTAGAACAGGTG 59.860 57.143 0.00 0.00 0.00 4.00
1429 1434 1.474143 GCATCCCTCTAGAACAGGTGC 60.474 57.143 5.97 5.97 0.00 5.01
1430 1435 1.139853 CATCCCTCTAGAACAGGTGCC 59.860 57.143 0.00 0.00 0.00 5.01
1431 1436 0.413832 TCCCTCTAGAACAGGTGCCT 59.586 55.000 0.00 0.00 0.00 4.75
1450 1455 4.478206 CCTGTTGGCAATAGAGAGAGAA 57.522 45.455 23.54 0.00 0.00 2.87
1451 1456 4.836825 CCTGTTGGCAATAGAGAGAGAAA 58.163 43.478 23.54 0.00 0.00 2.52
1452 1457 4.874966 CCTGTTGGCAATAGAGAGAGAAAG 59.125 45.833 23.54 1.67 0.00 2.62
1453 1458 4.836825 TGTTGGCAATAGAGAGAGAAAGG 58.163 43.478 1.92 0.00 0.00 3.11
1454 1459 4.532126 TGTTGGCAATAGAGAGAGAAAGGA 59.468 41.667 1.92 0.00 0.00 3.36
1455 1460 4.744795 TGGCAATAGAGAGAGAAAGGAC 57.255 45.455 0.00 0.00 0.00 3.85
1456 1461 4.096681 TGGCAATAGAGAGAGAAAGGACA 58.903 43.478 0.00 0.00 0.00 4.02
1457 1462 4.081420 TGGCAATAGAGAGAGAAAGGACAC 60.081 45.833 0.00 0.00 0.00 3.67
1458 1463 4.081420 GGCAATAGAGAGAGAAAGGACACA 60.081 45.833 0.00 0.00 0.00 3.72
1459 1464 5.482908 GCAATAGAGAGAGAAAGGACACAA 58.517 41.667 0.00 0.00 0.00 3.33
1460 1465 5.350091 GCAATAGAGAGAGAAAGGACACAAC 59.650 44.000 0.00 0.00 0.00 3.32
1461 1466 6.696411 CAATAGAGAGAGAAAGGACACAACT 58.304 40.000 0.00 0.00 0.00 3.16
1462 1467 4.599047 AGAGAGAGAAAGGACACAACTG 57.401 45.455 0.00 0.00 0.00 3.16
1463 1468 3.964031 AGAGAGAGAAAGGACACAACTGT 59.036 43.478 0.00 0.00 0.00 3.55
1464 1469 4.407296 AGAGAGAGAAAGGACACAACTGTT 59.593 41.667 0.00 0.00 0.00 3.16
1465 1470 4.698575 AGAGAGAAAGGACACAACTGTTC 58.301 43.478 0.00 0.00 0.00 3.18
1466 1471 3.458189 AGAGAAAGGACACAACTGTTCG 58.542 45.455 0.00 0.00 29.98 3.95
1467 1472 2.544267 GAGAAAGGACACAACTGTTCGG 59.456 50.000 0.00 0.00 29.98 4.30
1468 1473 1.602377 GAAAGGACACAACTGTTCGGG 59.398 52.381 0.00 0.00 29.98 5.14
1469 1474 0.179029 AAGGACACAACTGTTCGGGG 60.179 55.000 0.00 0.00 29.98 5.73
1470 1475 1.147600 GGACACAACTGTTCGGGGT 59.852 57.895 0.00 0.00 0.00 4.95
1471 1476 0.464916 GGACACAACTGTTCGGGGTT 60.465 55.000 0.00 0.00 0.00 4.11
1472 1477 0.661020 GACACAACTGTTCGGGGTTG 59.339 55.000 0.00 0.00 45.55 3.77
1473 1478 0.750182 ACACAACTGTTCGGGGTTGG 60.750 55.000 9.96 2.98 44.71 3.77
1474 1479 0.464735 CACAACTGTTCGGGGTTGGA 60.465 55.000 9.96 0.00 44.71 3.53
1475 1480 0.464916 ACAACTGTTCGGGGTTGGAC 60.465 55.000 9.96 0.00 44.71 4.02
1476 1481 0.464735 CAACTGTTCGGGGTTGGACA 60.465 55.000 0.00 0.00 39.08 4.02
1477 1482 0.464916 AACTGTTCGGGGTTGGACAC 60.465 55.000 0.00 0.00 0.00 3.67
1478 1483 1.147376 CTGTTCGGGGTTGGACACA 59.853 57.895 0.00 0.00 0.00 3.72
1479 1484 1.153127 TGTTCGGGGTTGGACACAC 60.153 57.895 0.00 0.00 0.00 3.82
1484 1489 2.931921 GGGTTGGACACACCCCTT 59.068 61.111 9.98 0.00 45.44 3.95
1485 1490 1.231928 GGGTTGGACACACCCCTTT 59.768 57.895 9.98 0.00 45.44 3.11
1486 1491 1.112916 GGGTTGGACACACCCCTTTG 61.113 60.000 9.98 0.00 45.44 2.77
1487 1492 1.739667 GTTGGACACACCCCTTTGC 59.260 57.895 0.00 0.00 38.00 3.68
1488 1493 0.755327 GTTGGACACACCCCTTTGCT 60.755 55.000 0.00 0.00 38.00 3.91
1489 1494 0.847373 TTGGACACACCCCTTTGCTA 59.153 50.000 0.00 0.00 38.00 3.49
1490 1495 0.847373 TGGACACACCCCTTTGCTAA 59.153 50.000 0.00 0.00 38.00 3.09
1491 1496 1.427368 TGGACACACCCCTTTGCTAAT 59.573 47.619 0.00 0.00 38.00 1.73
1492 1497 1.818674 GGACACACCCCTTTGCTAATG 59.181 52.381 0.00 0.00 0.00 1.90
1493 1498 2.554344 GGACACACCCCTTTGCTAATGA 60.554 50.000 0.00 0.00 0.00 2.57
1494 1499 2.488153 GACACACCCCTTTGCTAATGAC 59.512 50.000 0.00 0.00 0.00 3.06
1495 1500 2.108250 ACACACCCCTTTGCTAATGACT 59.892 45.455 0.00 0.00 0.00 3.41
1496 1501 3.329520 ACACACCCCTTTGCTAATGACTA 59.670 43.478 0.00 0.00 0.00 2.59
1497 1502 4.018415 ACACACCCCTTTGCTAATGACTAT 60.018 41.667 0.00 0.00 0.00 2.12
1498 1503 4.949856 CACACCCCTTTGCTAATGACTATT 59.050 41.667 0.00 0.00 0.00 1.73
1499 1504 5.066505 CACACCCCTTTGCTAATGACTATTC 59.933 44.000 0.00 0.00 0.00 1.75
1500 1505 4.273480 CACCCCTTTGCTAATGACTATTCG 59.727 45.833 0.00 0.00 0.00 3.34
1501 1506 3.815401 CCCCTTTGCTAATGACTATTCGG 59.185 47.826 0.00 0.00 0.00 4.30
1502 1507 4.444306 CCCCTTTGCTAATGACTATTCGGA 60.444 45.833 0.00 0.00 0.00 4.55
1503 1508 5.123227 CCCTTTGCTAATGACTATTCGGAA 58.877 41.667 0.00 0.00 0.00 4.30
1504 1509 5.765182 CCCTTTGCTAATGACTATTCGGAAT 59.235 40.000 8.49 8.49 0.00 3.01
1505 1510 6.293626 CCCTTTGCTAATGACTATTCGGAATG 60.294 42.308 13.37 6.14 0.00 2.67
1506 1511 5.673337 TTGCTAATGACTATTCGGAATGC 57.327 39.130 13.37 6.05 0.00 3.56
1507 1512 4.065088 TGCTAATGACTATTCGGAATGCC 58.935 43.478 13.37 3.25 0.00 4.40
1508 1513 3.437049 GCTAATGACTATTCGGAATGCCC 59.563 47.826 13.37 2.93 0.00 5.36
1509 1514 3.576078 AATGACTATTCGGAATGCCCA 57.424 42.857 13.37 8.05 34.14 5.36
1510 1515 3.795688 ATGACTATTCGGAATGCCCAT 57.204 42.857 13.37 9.76 34.14 4.00
1511 1516 4.908601 ATGACTATTCGGAATGCCCATA 57.091 40.909 13.37 0.00 34.14 2.74
1512 1517 4.698201 TGACTATTCGGAATGCCCATAA 57.302 40.909 13.37 0.00 34.14 1.90
1513 1518 4.385825 TGACTATTCGGAATGCCCATAAC 58.614 43.478 13.37 0.00 34.14 1.89
1514 1519 4.102524 TGACTATTCGGAATGCCCATAACT 59.897 41.667 13.37 0.00 34.14 2.24
1515 1520 4.389374 ACTATTCGGAATGCCCATAACTG 58.611 43.478 13.37 0.00 34.14 3.16
1516 1521 2.799126 TTCGGAATGCCCATAACTGT 57.201 45.000 0.00 0.00 34.14 3.55
1517 1522 2.799126 TCGGAATGCCCATAACTGTT 57.201 45.000 0.00 0.00 34.14 3.16
1518 1523 2.639065 TCGGAATGCCCATAACTGTTC 58.361 47.619 0.00 0.00 34.14 3.18
1519 1524 1.676006 CGGAATGCCCATAACTGTTCC 59.324 52.381 0.00 0.00 33.49 3.62
1520 1525 2.031870 GGAATGCCCATAACTGTTCCC 58.968 52.381 0.00 0.00 34.14 3.97
1521 1526 1.676006 GAATGCCCATAACTGTTCCCG 59.324 52.381 0.00 0.00 0.00 5.14
1522 1527 0.751643 ATGCCCATAACTGTTCCCGC 60.752 55.000 0.00 0.00 0.00 6.13
1523 1528 2.469516 GCCCATAACTGTTCCCGCG 61.470 63.158 0.00 0.00 0.00 6.46
1524 1529 1.078708 CCCATAACTGTTCCCGCGT 60.079 57.895 4.92 0.00 0.00 6.01
1525 1530 0.176219 CCCATAACTGTTCCCGCGTA 59.824 55.000 4.92 0.00 0.00 4.42
1526 1531 1.567504 CCATAACTGTTCCCGCGTAG 58.432 55.000 4.92 0.00 0.00 3.51
1527 1532 1.134907 CCATAACTGTTCCCGCGTAGT 60.135 52.381 4.92 0.00 0.00 2.73
1528 1533 2.613691 CATAACTGTTCCCGCGTAGTT 58.386 47.619 4.92 9.86 37.21 2.24
1529 1534 2.068837 TAACTGTTCCCGCGTAGTTG 57.931 50.000 4.92 0.00 35.26 3.16
1530 1535 0.601841 AACTGTTCCCGCGTAGTTGG 60.602 55.000 4.92 0.00 32.56 3.77
1531 1536 1.005394 CTGTTCCCGCGTAGTTGGT 60.005 57.895 4.92 0.00 0.00 3.67
1532 1537 0.601841 CTGTTCCCGCGTAGTTGGTT 60.602 55.000 4.92 0.00 0.00 3.67
1533 1538 0.678395 TGTTCCCGCGTAGTTGGTTA 59.322 50.000 4.92 0.00 0.00 2.85
1534 1539 1.337074 TGTTCCCGCGTAGTTGGTTAG 60.337 52.381 4.92 0.00 0.00 2.34
1535 1540 0.390209 TTCCCGCGTAGTTGGTTAGC 60.390 55.000 4.92 0.00 0.00 3.09
1537 1542 4.157817 CGCGTAGTTGGTTAGCGT 57.842 55.556 0.00 0.00 44.96 5.07
1538 1543 3.311080 CGCGTAGTTGGTTAGCGTA 57.689 52.632 0.00 0.00 44.96 4.42
1539 1544 1.831343 CGCGTAGTTGGTTAGCGTAT 58.169 50.000 0.00 0.00 44.96 3.06
1540 1545 2.985751 CGCGTAGTTGGTTAGCGTATA 58.014 47.619 0.00 0.00 44.96 1.47
1541 1546 2.969306 CGCGTAGTTGGTTAGCGTATAG 59.031 50.000 0.00 0.00 44.96 1.31
1542 1547 4.679265 CGCGTAGTTGGTTAGCGTATAGC 61.679 52.174 0.00 0.00 44.96 2.97
1559 1564 4.651867 CCCATTGGCCAGACTCAG 57.348 61.111 5.11 0.00 0.00 3.35
1560 1565 1.993653 CCCATTGGCCAGACTCAGA 59.006 57.895 5.11 0.00 0.00 3.27
1561 1566 0.549950 CCCATTGGCCAGACTCAGAT 59.450 55.000 5.11 0.00 0.00 2.90
1562 1567 1.476471 CCCATTGGCCAGACTCAGATC 60.476 57.143 5.11 0.00 0.00 2.75
1563 1568 1.211212 CCATTGGCCAGACTCAGATCA 59.789 52.381 5.11 0.00 0.00 2.92
1564 1569 2.356432 CCATTGGCCAGACTCAGATCAA 60.356 50.000 5.11 0.00 0.00 2.57
1565 1570 3.349927 CATTGGCCAGACTCAGATCAAA 58.650 45.455 5.11 0.00 0.00 2.69
1566 1571 3.726557 TTGGCCAGACTCAGATCAAAT 57.273 42.857 5.11 0.00 0.00 2.32
1567 1572 4.842531 TTGGCCAGACTCAGATCAAATA 57.157 40.909 5.11 0.00 0.00 1.40
1568 1573 4.142609 TGGCCAGACTCAGATCAAATAC 57.857 45.455 0.00 0.00 0.00 1.89
1569 1574 3.118261 TGGCCAGACTCAGATCAAATACC 60.118 47.826 0.00 0.00 0.00 2.73
1570 1575 3.118261 GGCCAGACTCAGATCAAATACCA 60.118 47.826 0.00 0.00 0.00 3.25
1571 1576 4.517285 GCCAGACTCAGATCAAATACCAA 58.483 43.478 0.00 0.00 0.00 3.67
1572 1577 4.574013 GCCAGACTCAGATCAAATACCAAG 59.426 45.833 0.00 0.00 0.00 3.61
1573 1578 5.627735 GCCAGACTCAGATCAAATACCAAGA 60.628 44.000 0.00 0.00 0.00 3.02
1574 1579 6.590068 CCAGACTCAGATCAAATACCAAGAT 58.410 40.000 0.00 0.00 0.00 2.40
1575 1580 6.705381 CCAGACTCAGATCAAATACCAAGATC 59.295 42.308 0.00 0.00 38.70 2.75
1576 1581 7.418827 CCAGACTCAGATCAAATACCAAGATCT 60.419 40.741 0.00 0.00 46.90 2.75
1577 1582 7.986320 CAGACTCAGATCAAATACCAAGATCTT 59.014 37.037 0.88 0.88 44.40 2.40
1578 1583 7.986320 AGACTCAGATCAAATACCAAGATCTTG 59.014 37.037 25.75 25.75 44.40 3.02
1579 1584 7.628234 ACTCAGATCAAATACCAAGATCTTGT 58.372 34.615 29.03 20.39 44.40 3.16
1580 1585 8.105829 ACTCAGATCAAATACCAAGATCTTGTT 58.894 33.333 29.03 20.69 44.40 2.83
1581 1586 9.605275 CTCAGATCAAATACCAAGATCTTGTTA 57.395 33.333 29.03 22.08 44.40 2.41
1582 1587 9.958180 TCAGATCAAATACCAAGATCTTGTTAA 57.042 29.630 29.03 16.69 44.40 2.01
1584 1589 8.897752 AGATCAAATACCAAGATCTTGTTAAGC 58.102 33.333 29.03 11.11 44.40 3.09
1585 1590 7.072177 TCAAATACCAAGATCTTGTTAAGCG 57.928 36.000 29.03 17.29 38.85 4.68
1586 1591 6.653320 TCAAATACCAAGATCTTGTTAAGCGT 59.347 34.615 29.03 21.26 38.85 5.07
1587 1592 6.422776 AATACCAAGATCTTGTTAAGCGTG 57.577 37.500 29.03 16.05 38.85 5.34
1588 1593 3.740115 ACCAAGATCTTGTTAAGCGTGT 58.260 40.909 29.03 16.61 38.85 4.49
1589 1594 4.134563 ACCAAGATCTTGTTAAGCGTGTT 58.865 39.130 29.03 4.66 38.85 3.32
1590 1595 5.302360 ACCAAGATCTTGTTAAGCGTGTTA 58.698 37.500 29.03 0.00 38.85 2.41
1591 1596 5.938125 ACCAAGATCTTGTTAAGCGTGTTAT 59.062 36.000 29.03 0.00 38.85 1.89
1592 1597 6.430000 ACCAAGATCTTGTTAAGCGTGTTATT 59.570 34.615 29.03 0.00 38.85 1.40
1593 1598 7.040686 ACCAAGATCTTGTTAAGCGTGTTATTT 60.041 33.333 29.03 0.00 38.85 1.40
1594 1599 7.807907 CCAAGATCTTGTTAAGCGTGTTATTTT 59.192 33.333 29.03 0.00 38.85 1.82
1595 1600 8.629986 CAAGATCTTGTTAAGCGTGTTATTTTG 58.370 33.333 24.65 0.00 35.92 2.44
1596 1601 8.094798 AGATCTTGTTAAGCGTGTTATTTTGA 57.905 30.769 0.00 0.00 0.00 2.69
1597 1602 8.564574 AGATCTTGTTAAGCGTGTTATTTTGAA 58.435 29.630 0.00 0.00 0.00 2.69
1598 1603 8.728088 ATCTTGTTAAGCGTGTTATTTTGAAG 57.272 30.769 0.00 0.00 0.00 3.02
1599 1604 7.699566 TCTTGTTAAGCGTGTTATTTTGAAGT 58.300 30.769 0.00 0.00 0.00 3.01
1600 1605 8.828644 TCTTGTTAAGCGTGTTATTTTGAAGTA 58.171 29.630 0.00 0.00 0.00 2.24
1601 1606 9.440784 CTTGTTAAGCGTGTTATTTTGAAGTAA 57.559 29.630 0.00 0.00 0.00 2.24
1602 1607 8.770850 TGTTAAGCGTGTTATTTTGAAGTAAC 57.229 30.769 3.12 3.12 0.00 2.50
1603 1608 7.856894 TGTTAAGCGTGTTATTTTGAAGTAACC 59.143 33.333 6.66 0.00 31.42 2.85
1604 1609 5.025986 AGCGTGTTATTTTGAAGTAACCG 57.974 39.130 6.66 9.53 31.42 4.44
1605 1610 3.600786 GCGTGTTATTTTGAAGTAACCGC 59.399 43.478 18.64 18.64 40.06 5.68
1606 1611 3.836348 CGTGTTATTTTGAAGTAACCGCG 59.164 43.478 0.00 0.00 31.42 6.46
1607 1612 4.153256 GTGTTATTTTGAAGTAACCGCGG 58.847 43.478 26.86 26.86 31.42 6.46
1608 1613 4.063689 TGTTATTTTGAAGTAACCGCGGA 58.936 39.130 35.90 7.50 31.42 5.54
1609 1614 4.083908 TGTTATTTTGAAGTAACCGCGGAC 60.084 41.667 35.90 21.46 31.42 4.79
1610 1615 0.860533 TTTTGAAGTAACCGCGGACG 59.139 50.000 35.90 5.52 39.67 4.79
1611 1616 1.559149 TTTGAAGTAACCGCGGACGC 61.559 55.000 35.90 20.12 38.22 5.19
1612 1617 3.184003 GAAGTAACCGCGGACGCC 61.184 66.667 35.90 16.23 38.22 5.68
1637 1642 3.791586 GCCAGGCCCACCTCTCTC 61.792 72.222 0.00 0.00 46.34 3.20
1638 1643 3.086600 CCAGGCCCACCTCTCTCC 61.087 72.222 0.00 0.00 46.34 3.71
1639 1644 2.040278 CAGGCCCACCTCTCTCCT 59.960 66.667 0.00 0.00 46.34 3.69
1640 1645 1.311403 CAGGCCCACCTCTCTCCTA 59.689 63.158 0.00 0.00 46.34 2.94
1641 1646 0.758685 CAGGCCCACCTCTCTCCTAG 60.759 65.000 0.00 0.00 46.34 3.02
1642 1647 1.458588 GGCCCACCTCTCTCCTAGG 60.459 68.421 0.82 0.82 40.20 3.02
1648 1653 1.688750 ACCTCTCTCCTAGGTGGTCT 58.311 55.000 9.08 0.00 45.78 3.85
1649 1654 1.567175 ACCTCTCTCCTAGGTGGTCTC 59.433 57.143 9.08 0.00 45.78 3.36
1650 1655 1.566703 CCTCTCTCCTAGGTGGTCTCA 59.433 57.143 9.08 0.00 37.07 3.27
1651 1656 2.024846 CCTCTCTCCTAGGTGGTCTCAA 60.025 54.545 9.08 0.00 37.07 3.02
1652 1657 3.020984 CTCTCTCCTAGGTGGTCTCAAC 58.979 54.545 9.08 0.00 37.07 3.18
1653 1658 2.104170 CTCTCCTAGGTGGTCTCAACC 58.896 57.143 9.08 0.00 46.66 3.77
1654 1659 1.717077 TCTCCTAGGTGGTCTCAACCT 59.283 52.381 9.08 1.31 46.60 3.50
1655 1660 1.827969 CTCCTAGGTGGTCTCAACCTG 59.172 57.143 9.08 0.00 46.60 4.00
1656 1661 0.250513 CCTAGGTGGTCTCAACCTGC 59.749 60.000 0.00 0.00 46.60 4.85
1657 1662 0.250513 CTAGGTGGTCTCAACCTGCC 59.749 60.000 6.12 0.77 46.60 4.85
1658 1663 1.198759 TAGGTGGTCTCAACCTGCCC 61.199 60.000 6.12 0.00 46.60 5.36
1659 1664 2.529744 GGTGGTCTCAACCTGCCCT 61.530 63.158 0.00 0.00 46.60 5.19
1660 1665 1.302832 GTGGTCTCAACCTGCCCTG 60.303 63.158 0.00 0.00 46.60 4.45
1661 1666 1.770110 TGGTCTCAACCTGCCCTGT 60.770 57.895 0.00 0.00 46.60 4.00
1662 1667 1.003233 GGTCTCAACCTGCCCTGTC 60.003 63.158 0.00 0.00 42.80 3.51
1663 1668 1.374758 GTCTCAACCTGCCCTGTCG 60.375 63.158 0.00 0.00 0.00 4.35
1664 1669 2.743928 CTCAACCTGCCCTGTCGC 60.744 66.667 0.00 0.00 0.00 5.19
1665 1670 3.241530 TCAACCTGCCCTGTCGCT 61.242 61.111 0.00 0.00 0.00 4.93
1666 1671 2.743928 CAACCTGCCCTGTCGCTC 60.744 66.667 0.00 0.00 0.00 5.03
1667 1672 4.021925 AACCTGCCCTGTCGCTCC 62.022 66.667 0.00 0.00 0.00 4.70
1669 1674 4.767255 CCTGCCCTGTCGCTCCAC 62.767 72.222 0.00 0.00 0.00 4.02
1670 1675 4.767255 CTGCCCTGTCGCTCCACC 62.767 72.222 0.00 0.00 0.00 4.61
1673 1678 3.625897 CCCTGTCGCTCCACCACA 61.626 66.667 0.00 0.00 0.00 4.17
1674 1679 2.425592 CCTGTCGCTCCACCACAA 59.574 61.111 0.00 0.00 0.00 3.33
1675 1680 1.227823 CCTGTCGCTCCACCACAAA 60.228 57.895 0.00 0.00 0.00 2.83
1676 1681 1.230635 CCTGTCGCTCCACCACAAAG 61.231 60.000 0.00 0.00 0.00 2.77
1677 1682 0.532862 CTGTCGCTCCACCACAAAGT 60.533 55.000 0.00 0.00 0.00 2.66
1678 1683 0.753867 TGTCGCTCCACCACAAAGTA 59.246 50.000 0.00 0.00 0.00 2.24
1679 1684 1.139256 TGTCGCTCCACCACAAAGTAA 59.861 47.619 0.00 0.00 0.00 2.24
1680 1685 1.529865 GTCGCTCCACCACAAAGTAAC 59.470 52.381 0.00 0.00 0.00 2.50
1681 1686 1.139256 TCGCTCCACCACAAAGTAACA 59.861 47.619 0.00 0.00 0.00 2.41
1682 1687 1.531149 CGCTCCACCACAAAGTAACAG 59.469 52.381 0.00 0.00 0.00 3.16
1683 1688 2.572290 GCTCCACCACAAAGTAACAGT 58.428 47.619 0.00 0.00 0.00 3.55
1684 1689 2.548480 GCTCCACCACAAAGTAACAGTC 59.452 50.000 0.00 0.00 0.00 3.51
1685 1690 2.800544 CTCCACCACAAAGTAACAGTCG 59.199 50.000 0.00 0.00 0.00 4.18
1686 1691 1.871039 CCACCACAAAGTAACAGTCGG 59.129 52.381 0.00 0.00 0.00 4.79
1687 1692 1.871039 CACCACAAAGTAACAGTCGGG 59.129 52.381 0.00 0.00 0.00 5.14
1688 1693 1.202722 ACCACAAAGTAACAGTCGGGG 60.203 52.381 0.00 0.00 0.00 5.73
1689 1694 1.519408 CACAAAGTAACAGTCGGGGG 58.481 55.000 0.00 0.00 0.00 5.40
1690 1695 0.250597 ACAAAGTAACAGTCGGGGGC 60.251 55.000 0.00 0.00 0.00 5.80
1691 1696 0.958876 CAAAGTAACAGTCGGGGGCC 60.959 60.000 0.00 0.00 0.00 5.80
1692 1697 1.131928 AAAGTAACAGTCGGGGGCCT 61.132 55.000 0.84 0.00 0.00 5.19
1693 1698 1.131928 AAGTAACAGTCGGGGGCCTT 61.132 55.000 0.84 0.00 0.00 4.35
1694 1699 1.078637 GTAACAGTCGGGGGCCTTC 60.079 63.158 0.84 0.00 0.00 3.46
1695 1700 2.652095 TAACAGTCGGGGGCCTTCG 61.652 63.158 0.84 8.57 0.00 3.79
1713 1718 2.376165 GGGAACCTAGGCCCACCTC 61.376 68.421 17.42 2.16 46.58 3.85
1714 1719 1.307084 GGAACCTAGGCCCACCTCT 60.307 63.158 9.30 0.00 46.34 3.69
1715 1720 0.031414 GGAACCTAGGCCCACCTCTA 60.031 60.000 9.30 0.00 46.34 2.43
1716 1721 1.121378 GAACCTAGGCCCACCTCTAC 58.879 60.000 9.30 0.00 46.34 2.59
1717 1722 0.326332 AACCTAGGCCCACCTCTACC 60.326 60.000 9.30 0.00 46.34 3.18
1718 1723 1.833049 CCTAGGCCCACCTCTACCG 60.833 68.421 0.00 0.00 46.34 4.02
1719 1724 1.833049 CTAGGCCCACCTCTACCGG 60.833 68.421 0.00 0.00 46.34 5.28
1720 1725 3.384555 TAGGCCCACCTCTACCGGG 62.385 68.421 6.32 0.00 46.34 5.73
1721 1726 4.791069 GGCCCACCTCTACCGGGA 62.791 72.222 6.32 0.00 43.21 5.14
1722 1727 2.446036 GCCCACCTCTACCGGGAT 60.446 66.667 6.32 0.00 43.21 3.85
1723 1728 2.808206 GCCCACCTCTACCGGGATG 61.808 68.421 6.32 0.00 43.21 3.51
1724 1729 2.140792 CCCACCTCTACCGGGATGG 61.141 68.421 6.32 5.20 43.21 3.51
1784 1789 2.417586 CACACGCAAGATCATGTGATGT 59.582 45.455 17.70 13.97 41.52 3.06
1945 1950 1.633561 CACACGTTCAGCTCGATGAT 58.366 50.000 0.00 0.00 0.00 2.45
2027 2032 4.948004 TGGTGACGATCTTGATGTACTACT 59.052 41.667 0.00 0.00 0.00 2.57
2065 2070 6.221659 GCCTAAACTCCGCTACAGTATTATT 58.778 40.000 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.533606 ACCTTCTGTCCATCTTCGATG 57.466 47.619 0.00 0.00 0.00 3.84
9 10 5.487488 AGTCCACATATTTACCTTCTGTCCA 59.513 40.000 0.00 0.00 0.00 4.02
74 75 8.418597 AGTTAGTAACTGATTACCTCTCACAA 57.581 34.615 14.82 0.00 41.54 3.33
107 108 5.424757 CCGTTGTTGGGTCAATTAGATCTA 58.575 41.667 0.00 0.00 0.00 1.98
249 250 5.601662 GATTTCACCGAGAAGATACCATGA 58.398 41.667 0.00 0.00 37.57 3.07
329 330 1.761449 TGAAGCTGCAACACTTGGAA 58.239 45.000 1.02 0.00 0.00 3.53
338 339 2.192664 TATCGGGTTTGAAGCTGCAA 57.807 45.000 1.85 1.85 32.96 4.08
408 409 2.159043 CGTGCCATGTAGAGTTCTCCAT 60.159 50.000 0.00 0.00 0.00 3.41
583 584 1.519234 GATCGACAGCGCATCACCA 60.519 57.895 11.47 0.00 37.46 4.17
586 587 1.298638 CTCGATCGACAGCGCATCA 60.299 57.895 15.15 0.00 37.46 3.07
600 601 2.660572 AGAATAGCTTCTCCTGCTCGA 58.339 47.619 0.00 0.00 37.09 4.04
785 786 1.001406 CCGAGAAGTTCTCAGCAAGGT 59.999 52.381 28.00 0.00 43.55 3.50
836 837 1.966451 GGTCTCTGCCACGGGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
1090 1093 4.529377 CCCATCCTGCATAGCCAAAATTAT 59.471 41.667 0.00 0.00 0.00 1.28
1262 1267 2.450476 GTGCCTCATCAAACCAGGAAT 58.550 47.619 0.00 0.00 0.00 3.01
1366 1371 6.782986 TCCCAGCTCTTGCAAATGTATATAT 58.217 36.000 0.00 0.00 42.74 0.86
1367 1372 6.186420 TCCCAGCTCTTGCAAATGTATATA 57.814 37.500 0.00 0.00 42.74 0.86
1368 1373 5.052693 TCCCAGCTCTTGCAAATGTATAT 57.947 39.130 0.00 0.00 42.74 0.86
1369 1374 4.502105 TCCCAGCTCTTGCAAATGTATA 57.498 40.909 0.00 0.00 42.74 1.47
1370 1375 3.370840 TCCCAGCTCTTGCAAATGTAT 57.629 42.857 0.00 0.00 42.74 2.29
1371 1376 2.877097 TCCCAGCTCTTGCAAATGTA 57.123 45.000 0.00 0.00 42.74 2.29
1372 1377 1.891150 CTTCCCAGCTCTTGCAAATGT 59.109 47.619 0.00 0.00 42.74 2.71
1373 1378 2.163815 CTCTTCCCAGCTCTTGCAAATG 59.836 50.000 0.00 0.00 42.74 2.32
1374 1379 2.444421 CTCTTCCCAGCTCTTGCAAAT 58.556 47.619 0.00 0.00 42.74 2.32
1375 1380 1.546323 CCTCTTCCCAGCTCTTGCAAA 60.546 52.381 0.00 0.00 42.74 3.68
1376 1381 0.037303 CCTCTTCCCAGCTCTTGCAA 59.963 55.000 0.00 0.00 42.74 4.08
1377 1382 1.130054 ACCTCTTCCCAGCTCTTGCA 61.130 55.000 0.00 0.00 42.74 4.08
1378 1383 0.676151 CACCTCTTCCCAGCTCTTGC 60.676 60.000 0.00 0.00 40.05 4.01
1379 1384 0.689623 ACACCTCTTCCCAGCTCTTG 59.310 55.000 0.00 0.00 0.00 3.02
1380 1385 0.980423 GACACCTCTTCCCAGCTCTT 59.020 55.000 0.00 0.00 0.00 2.85
1381 1386 0.116143 AGACACCTCTTCCCAGCTCT 59.884 55.000 0.00 0.00 0.00 4.09
1382 1387 0.248843 CAGACACCTCTTCCCAGCTC 59.751 60.000 0.00 0.00 0.00 4.09
1383 1388 0.472734 ACAGACACCTCTTCCCAGCT 60.473 55.000 0.00 0.00 0.00 4.24
1384 1389 0.398318 AACAGACACCTCTTCCCAGC 59.602 55.000 0.00 0.00 0.00 4.85
1385 1390 1.694150 TGAACAGACACCTCTTCCCAG 59.306 52.381 0.00 0.00 0.00 4.45
1386 1391 1.694150 CTGAACAGACACCTCTTCCCA 59.306 52.381 0.00 0.00 0.00 4.37
1387 1392 1.971357 TCTGAACAGACACCTCTTCCC 59.029 52.381 0.00 0.00 31.41 3.97
1388 1393 2.028567 CCTCTGAACAGACACCTCTTCC 60.029 54.545 0.00 0.00 33.22 3.46
1389 1394 2.611722 GCCTCTGAACAGACACCTCTTC 60.612 54.545 0.00 0.00 33.22 2.87
1390 1395 1.346068 GCCTCTGAACAGACACCTCTT 59.654 52.381 0.00 0.00 33.22 2.85
1391 1396 0.972883 GCCTCTGAACAGACACCTCT 59.027 55.000 0.00 0.00 33.22 3.69
1392 1397 0.681733 TGCCTCTGAACAGACACCTC 59.318 55.000 0.00 0.00 33.22 3.85
1393 1398 1.277557 GATGCCTCTGAACAGACACCT 59.722 52.381 0.00 0.00 33.22 4.00
1394 1399 1.677217 GGATGCCTCTGAACAGACACC 60.677 57.143 0.00 1.11 33.22 4.16
1395 1400 1.677217 GGGATGCCTCTGAACAGACAC 60.677 57.143 0.00 0.00 33.22 3.67
1396 1401 0.615331 GGGATGCCTCTGAACAGACA 59.385 55.000 0.00 0.00 33.22 3.41
1397 1402 0.908198 AGGGATGCCTCTGAACAGAC 59.092 55.000 0.00 0.00 33.22 3.51
1398 1403 1.198713 GAGGGATGCCTCTGAACAGA 58.801 55.000 25.02 4.45 34.30 3.41
1399 1404 1.202330 AGAGGGATGCCTCTGAACAG 58.798 55.000 32.82 0.00 44.45 3.16
1400 1405 2.023984 TCTAGAGGGATGCCTCTGAACA 60.024 50.000 38.10 21.72 45.52 3.18
1401 1406 2.672098 TCTAGAGGGATGCCTCTGAAC 58.328 52.381 38.10 13.07 45.52 3.18
1402 1407 3.034635 GTTCTAGAGGGATGCCTCTGAA 58.965 50.000 38.10 32.24 45.52 3.02
1403 1408 2.023984 TGTTCTAGAGGGATGCCTCTGA 60.024 50.000 38.10 29.47 45.52 3.27
1404 1409 2.364970 CTGTTCTAGAGGGATGCCTCTG 59.635 54.545 38.10 28.04 45.52 3.35
1406 1411 1.691434 CCTGTTCTAGAGGGATGCCTC 59.309 57.143 24.94 24.94 37.11 4.70
1407 1412 1.008938 ACCTGTTCTAGAGGGATGCCT 59.991 52.381 4.97 4.97 34.56 4.75
1408 1413 1.139853 CACCTGTTCTAGAGGGATGCC 59.860 57.143 13.17 0.00 34.56 4.40
1409 1414 1.474143 GCACCTGTTCTAGAGGGATGC 60.474 57.143 13.17 13.57 34.56 3.91
1410 1415 1.139853 GGCACCTGTTCTAGAGGGATG 59.860 57.143 13.17 9.45 34.56 3.51
1411 1416 1.008938 AGGCACCTGTTCTAGAGGGAT 59.991 52.381 13.17 0.00 34.56 3.85
1412 1417 0.413832 AGGCACCTGTTCTAGAGGGA 59.586 55.000 13.17 0.00 34.56 4.20
1413 1418 0.539051 CAGGCACCTGTTCTAGAGGG 59.461 60.000 8.61 4.61 39.10 4.30
1429 1434 4.478206 TTCTCTCTCTATTGCCAACAGG 57.522 45.455 0.00 0.00 0.00 4.00
1430 1435 4.874966 CCTTTCTCTCTCTATTGCCAACAG 59.125 45.833 0.00 0.00 0.00 3.16
1431 1436 4.532126 TCCTTTCTCTCTCTATTGCCAACA 59.468 41.667 0.00 0.00 0.00 3.33
1432 1437 4.873259 GTCCTTTCTCTCTCTATTGCCAAC 59.127 45.833 0.00 0.00 0.00 3.77
1433 1438 4.532126 TGTCCTTTCTCTCTCTATTGCCAA 59.468 41.667 0.00 0.00 0.00 4.52
1434 1439 4.081420 GTGTCCTTTCTCTCTCTATTGCCA 60.081 45.833 0.00 0.00 0.00 4.92
1435 1440 4.081420 TGTGTCCTTTCTCTCTCTATTGCC 60.081 45.833 0.00 0.00 0.00 4.52
1436 1441 5.078411 TGTGTCCTTTCTCTCTCTATTGC 57.922 43.478 0.00 0.00 0.00 3.56
1437 1442 6.589523 CAGTTGTGTCCTTTCTCTCTCTATTG 59.410 42.308 0.00 0.00 0.00 1.90
1438 1443 6.268847 ACAGTTGTGTCCTTTCTCTCTCTATT 59.731 38.462 0.00 0.00 26.76 1.73
1439 1444 5.777732 ACAGTTGTGTCCTTTCTCTCTCTAT 59.222 40.000 0.00 0.00 26.76 1.98
1440 1445 5.141182 ACAGTTGTGTCCTTTCTCTCTCTA 58.859 41.667 0.00 0.00 26.76 2.43
1441 1446 3.964031 ACAGTTGTGTCCTTTCTCTCTCT 59.036 43.478 0.00 0.00 26.76 3.10
1442 1447 4.329462 ACAGTTGTGTCCTTTCTCTCTC 57.671 45.455 0.00 0.00 26.76 3.20
1443 1448 4.698575 GAACAGTTGTGTCCTTTCTCTCT 58.301 43.478 0.00 0.00 35.08 3.10
1444 1449 3.491267 CGAACAGTTGTGTCCTTTCTCTC 59.509 47.826 0.00 0.00 35.08 3.20
1445 1450 3.458189 CGAACAGTTGTGTCCTTTCTCT 58.542 45.455 0.00 0.00 35.08 3.10
1446 1451 2.544267 CCGAACAGTTGTGTCCTTTCTC 59.456 50.000 0.00 0.00 35.08 2.87
1447 1452 2.561569 CCGAACAGTTGTGTCCTTTCT 58.438 47.619 0.00 0.00 35.08 2.52
1448 1453 1.602377 CCCGAACAGTTGTGTCCTTTC 59.398 52.381 0.00 0.00 35.08 2.62
1449 1454 1.675552 CCCGAACAGTTGTGTCCTTT 58.324 50.000 0.00 0.00 35.08 3.11
1450 1455 0.179029 CCCCGAACAGTTGTGTCCTT 60.179 55.000 0.00 0.00 35.08 3.36
1451 1456 1.342672 ACCCCGAACAGTTGTGTCCT 61.343 55.000 0.00 0.00 35.08 3.85
1452 1457 0.464916 AACCCCGAACAGTTGTGTCC 60.465 55.000 0.00 0.00 35.08 4.02
1453 1458 0.661020 CAACCCCGAACAGTTGTGTC 59.339 55.000 0.00 0.00 38.81 3.67
1454 1459 0.750182 CCAACCCCGAACAGTTGTGT 60.750 55.000 0.00 0.00 41.42 3.72
1455 1460 0.464735 TCCAACCCCGAACAGTTGTG 60.465 55.000 0.00 0.00 41.42 3.33
1456 1461 0.464916 GTCCAACCCCGAACAGTTGT 60.465 55.000 0.00 0.00 41.42 3.32
1457 1462 0.464735 TGTCCAACCCCGAACAGTTG 60.465 55.000 0.00 0.00 42.41 3.16
1458 1463 0.464916 GTGTCCAACCCCGAACAGTT 60.465 55.000 0.00 0.00 0.00 3.16
1459 1464 1.147600 GTGTCCAACCCCGAACAGT 59.852 57.895 0.00 0.00 0.00 3.55
1460 1465 1.147376 TGTGTCCAACCCCGAACAG 59.853 57.895 0.00 0.00 0.00 3.16
1461 1466 1.153127 GTGTGTCCAACCCCGAACA 60.153 57.895 0.00 0.00 0.00 3.18
1462 1467 1.895231 GGTGTGTCCAACCCCGAAC 60.895 63.158 0.00 0.00 35.97 3.95
1463 1468 2.511900 GGTGTGTCCAACCCCGAA 59.488 61.111 0.00 0.00 35.97 4.30
1469 1474 0.755327 AGCAAAGGGGTGTGTCCAAC 60.755 55.000 0.00 0.00 38.11 3.77
1470 1475 0.847373 TAGCAAAGGGGTGTGTCCAA 59.153 50.000 0.00 0.00 38.11 3.53
1471 1476 0.847373 TTAGCAAAGGGGTGTGTCCA 59.153 50.000 0.00 0.00 38.11 4.02
1472 1477 1.818674 CATTAGCAAAGGGGTGTGTCC 59.181 52.381 0.00 0.00 0.00 4.02
1473 1478 2.488153 GTCATTAGCAAAGGGGTGTGTC 59.512 50.000 0.00 0.00 0.00 3.67
1474 1479 2.108250 AGTCATTAGCAAAGGGGTGTGT 59.892 45.455 0.00 0.00 0.00 3.72
1475 1480 2.795329 AGTCATTAGCAAAGGGGTGTG 58.205 47.619 0.00 0.00 0.00 3.82
1476 1481 4.862641 ATAGTCATTAGCAAAGGGGTGT 57.137 40.909 0.00 0.00 0.00 4.16
1477 1482 4.273480 CGAATAGTCATTAGCAAAGGGGTG 59.727 45.833 0.00 0.00 0.00 4.61
1478 1483 4.451900 CGAATAGTCATTAGCAAAGGGGT 58.548 43.478 0.00 0.00 0.00 4.95
1479 1484 3.815401 CCGAATAGTCATTAGCAAAGGGG 59.185 47.826 0.00 0.00 0.00 4.79
1480 1485 4.703897 TCCGAATAGTCATTAGCAAAGGG 58.296 43.478 0.00 0.00 0.00 3.95
1481 1486 6.662616 CATTCCGAATAGTCATTAGCAAAGG 58.337 40.000 0.00 0.00 0.00 3.11
1482 1487 6.138761 GCATTCCGAATAGTCATTAGCAAAG 58.861 40.000 0.00 0.00 0.00 2.77
1483 1488 5.008613 GGCATTCCGAATAGTCATTAGCAAA 59.991 40.000 0.00 0.00 0.00 3.68
1484 1489 4.515191 GGCATTCCGAATAGTCATTAGCAA 59.485 41.667 0.00 0.00 0.00 3.91
1485 1490 4.065088 GGCATTCCGAATAGTCATTAGCA 58.935 43.478 0.00 0.00 0.00 3.49
1486 1491 3.437049 GGGCATTCCGAATAGTCATTAGC 59.563 47.826 0.00 0.00 0.00 3.09
1487 1492 4.641396 TGGGCATTCCGAATAGTCATTAG 58.359 43.478 0.00 0.00 38.76 1.73
1488 1493 4.698201 TGGGCATTCCGAATAGTCATTA 57.302 40.909 0.00 0.00 38.76 1.90
1489 1494 3.576078 TGGGCATTCCGAATAGTCATT 57.424 42.857 0.00 0.00 38.76 2.57
1490 1495 3.795688 ATGGGCATTCCGAATAGTCAT 57.204 42.857 0.00 0.00 38.76 3.06
1491 1496 4.102524 AGTTATGGGCATTCCGAATAGTCA 59.897 41.667 0.00 0.00 38.76 3.41
1492 1497 4.452455 CAGTTATGGGCATTCCGAATAGTC 59.548 45.833 0.00 0.00 38.76 2.59
1493 1498 4.141482 ACAGTTATGGGCATTCCGAATAGT 60.141 41.667 0.00 0.00 38.76 2.12
1494 1499 4.389374 ACAGTTATGGGCATTCCGAATAG 58.611 43.478 0.00 0.00 38.76 1.73
1495 1500 4.431416 ACAGTTATGGGCATTCCGAATA 57.569 40.909 0.00 0.00 38.76 1.75
1496 1501 3.297134 ACAGTTATGGGCATTCCGAAT 57.703 42.857 0.00 0.00 38.76 3.34
1497 1502 2.799126 ACAGTTATGGGCATTCCGAA 57.201 45.000 0.00 0.00 38.76 4.30
1498 1503 2.639065 GAACAGTTATGGGCATTCCGA 58.361 47.619 0.00 0.00 38.76 4.55
1499 1504 1.676006 GGAACAGTTATGGGCATTCCG 59.324 52.381 0.00 0.00 38.76 4.30
1500 1505 2.031870 GGGAACAGTTATGGGCATTCC 58.968 52.381 0.00 0.00 35.81 3.01
1501 1506 1.676006 CGGGAACAGTTATGGGCATTC 59.324 52.381 0.00 0.00 0.00 2.67
1502 1507 1.762708 CGGGAACAGTTATGGGCATT 58.237 50.000 0.00 0.00 0.00 3.56
1503 1508 0.751643 GCGGGAACAGTTATGGGCAT 60.752 55.000 0.00 0.00 0.00 4.40
1504 1509 1.377987 GCGGGAACAGTTATGGGCA 60.378 57.895 0.00 0.00 0.00 5.36
1505 1510 2.469516 CGCGGGAACAGTTATGGGC 61.470 63.158 0.00 0.00 0.00 5.36
1506 1511 0.176219 TACGCGGGAACAGTTATGGG 59.824 55.000 12.47 0.00 0.00 4.00
1507 1512 1.134907 ACTACGCGGGAACAGTTATGG 60.135 52.381 12.47 0.00 0.00 2.74
1508 1513 2.288961 ACTACGCGGGAACAGTTATG 57.711 50.000 12.47 0.00 0.00 1.90
1509 1514 2.613691 CAACTACGCGGGAACAGTTAT 58.386 47.619 12.47 0.00 30.31 1.89
1510 1515 1.337074 CCAACTACGCGGGAACAGTTA 60.337 52.381 12.47 0.00 30.31 2.24
1511 1516 0.601841 CCAACTACGCGGGAACAGTT 60.602 55.000 12.47 8.68 0.00 3.16
1512 1517 1.005394 CCAACTACGCGGGAACAGT 60.005 57.895 12.47 2.20 0.00 3.55
1513 1518 0.601841 AACCAACTACGCGGGAACAG 60.602 55.000 12.47 1.50 0.00 3.16
1514 1519 0.678395 TAACCAACTACGCGGGAACA 59.322 50.000 12.47 0.00 0.00 3.18
1515 1520 1.353076 CTAACCAACTACGCGGGAAC 58.647 55.000 12.47 0.00 0.00 3.62
1516 1521 0.390209 GCTAACCAACTACGCGGGAA 60.390 55.000 12.47 0.00 0.00 3.97
1517 1522 1.216178 GCTAACCAACTACGCGGGA 59.784 57.895 12.47 0.00 0.00 5.14
1518 1523 2.162754 CGCTAACCAACTACGCGGG 61.163 63.158 12.47 3.45 40.11 6.13
1519 1524 3.380671 CGCTAACCAACTACGCGG 58.619 61.111 12.47 0.00 40.11 6.46
1521 1526 2.723143 GCTATACGCTAACCAACTACGC 59.277 50.000 0.00 0.00 35.14 4.42
1522 1527 3.303406 GGCTATACGCTAACCAACTACG 58.697 50.000 0.00 0.00 39.13 3.51
1523 1528 3.068590 TGGGCTATACGCTAACCAACTAC 59.931 47.826 0.00 0.00 39.13 2.73
1524 1529 3.298619 TGGGCTATACGCTAACCAACTA 58.701 45.455 0.00 0.00 39.13 2.24
1525 1530 2.112998 TGGGCTATACGCTAACCAACT 58.887 47.619 0.00 0.00 39.13 3.16
1526 1531 2.607631 TGGGCTATACGCTAACCAAC 57.392 50.000 0.00 0.00 39.13 3.77
1527 1532 3.472652 CAATGGGCTATACGCTAACCAA 58.527 45.455 0.00 0.00 39.13 3.67
1528 1533 2.224426 CCAATGGGCTATACGCTAACCA 60.224 50.000 0.00 0.00 39.13 3.67
1529 1534 2.423577 CCAATGGGCTATACGCTAACC 58.576 52.381 0.00 0.00 39.13 2.85
1542 1547 0.549950 ATCTGAGTCTGGCCAATGGG 59.450 55.000 7.01 0.00 37.18 4.00
1543 1548 1.211212 TGATCTGAGTCTGGCCAATGG 59.789 52.381 7.01 0.00 0.00 3.16
1544 1549 2.704464 TGATCTGAGTCTGGCCAATG 57.296 50.000 7.01 0.00 0.00 2.82
1545 1550 3.726557 TTTGATCTGAGTCTGGCCAAT 57.273 42.857 7.01 0.00 0.00 3.16
1546 1551 3.726557 ATTTGATCTGAGTCTGGCCAA 57.273 42.857 7.01 0.00 0.00 4.52
1547 1552 3.118261 GGTATTTGATCTGAGTCTGGCCA 60.118 47.826 4.71 4.71 0.00 5.36
1548 1553 3.118261 TGGTATTTGATCTGAGTCTGGCC 60.118 47.826 0.00 0.00 0.00 5.36
1549 1554 4.142609 TGGTATTTGATCTGAGTCTGGC 57.857 45.455 0.00 0.00 0.00 4.85
1550 1555 5.982356 TCTTGGTATTTGATCTGAGTCTGG 58.018 41.667 0.00 0.00 0.00 3.86
1551 1556 7.499292 AGATCTTGGTATTTGATCTGAGTCTG 58.501 38.462 0.00 0.00 43.42 3.51
1552 1557 7.673641 AGATCTTGGTATTTGATCTGAGTCT 57.326 36.000 0.00 0.00 43.42 3.24
1553 1558 7.768120 ACAAGATCTTGGTATTTGATCTGAGTC 59.232 37.037 33.11 0.00 44.03 3.36
1554 1559 7.628234 ACAAGATCTTGGTATTTGATCTGAGT 58.372 34.615 33.11 8.94 44.03 3.41
1555 1560 8.503458 AACAAGATCTTGGTATTTGATCTGAG 57.497 34.615 33.11 8.29 44.03 3.35
1556 1561 9.958180 TTAACAAGATCTTGGTATTTGATCTGA 57.042 29.630 33.11 14.34 44.03 3.27
1558 1563 8.897752 GCTTAACAAGATCTTGGTATTTGATCT 58.102 33.333 33.11 10.60 45.95 2.75
1559 1564 7.852945 CGCTTAACAAGATCTTGGTATTTGATC 59.147 37.037 33.11 14.69 41.78 2.92
1560 1565 7.336931 ACGCTTAACAAGATCTTGGTATTTGAT 59.663 33.333 33.11 16.41 41.78 2.57
1561 1566 6.653320 ACGCTTAACAAGATCTTGGTATTTGA 59.347 34.615 33.11 18.36 41.78 2.69
1562 1567 6.742718 CACGCTTAACAAGATCTTGGTATTTG 59.257 38.462 33.11 24.57 41.78 2.32
1563 1568 6.430000 ACACGCTTAACAAGATCTTGGTATTT 59.570 34.615 33.11 22.25 41.78 1.40
1564 1569 5.938125 ACACGCTTAACAAGATCTTGGTATT 59.062 36.000 33.11 22.55 41.78 1.89
1565 1570 5.488341 ACACGCTTAACAAGATCTTGGTAT 58.512 37.500 33.11 22.54 41.78 2.73
1566 1571 4.890088 ACACGCTTAACAAGATCTTGGTA 58.110 39.130 33.11 29.72 44.45 3.25
1567 1572 3.740115 ACACGCTTAACAAGATCTTGGT 58.260 40.909 33.11 30.75 44.45 3.67
1568 1573 4.749245 AACACGCTTAACAAGATCTTGG 57.251 40.909 33.11 19.40 44.45 3.61
1569 1574 8.629986 CAAAATAACACGCTTAACAAGATCTTG 58.370 33.333 29.74 29.74 45.58 3.02
1570 1575 8.564574 TCAAAATAACACGCTTAACAAGATCTT 58.435 29.630 0.88 0.88 0.00 2.40
1571 1576 8.094798 TCAAAATAACACGCTTAACAAGATCT 57.905 30.769 0.00 0.00 0.00 2.75
1572 1577 8.722342 TTCAAAATAACACGCTTAACAAGATC 57.278 30.769 0.00 0.00 0.00 2.75
1573 1578 8.349983 ACTTCAAAATAACACGCTTAACAAGAT 58.650 29.630 0.00 0.00 0.00 2.40
1574 1579 7.699566 ACTTCAAAATAACACGCTTAACAAGA 58.300 30.769 0.00 0.00 0.00 3.02
1575 1580 7.908193 ACTTCAAAATAACACGCTTAACAAG 57.092 32.000 0.00 0.00 0.00 3.16
1576 1581 9.224058 GTTACTTCAAAATAACACGCTTAACAA 57.776 29.630 0.00 0.00 32.56 2.83
1577 1582 7.856894 GGTTACTTCAAAATAACACGCTTAACA 59.143 33.333 0.00 0.00 33.71 2.41
1578 1583 7.058693 CGGTTACTTCAAAATAACACGCTTAAC 59.941 37.037 0.00 0.00 33.71 2.01
1579 1584 7.070798 CGGTTACTTCAAAATAACACGCTTAA 58.929 34.615 0.00 0.00 33.71 1.85
1580 1585 6.592166 CGGTTACTTCAAAATAACACGCTTA 58.408 36.000 0.00 0.00 33.71 3.09
1581 1586 5.445845 CGGTTACTTCAAAATAACACGCTT 58.554 37.500 0.00 0.00 33.71 4.68
1582 1587 4.612033 GCGGTTACTTCAAAATAACACGCT 60.612 41.667 15.76 0.00 41.92 5.07
1583 1588 3.600786 GCGGTTACTTCAAAATAACACGC 59.399 43.478 11.26 11.26 40.37 5.34
1584 1589 3.836348 CGCGGTTACTTCAAAATAACACG 59.164 43.478 0.00 0.55 33.71 4.49
1585 1590 4.083908 TCCGCGGTTACTTCAAAATAACAC 60.084 41.667 27.15 0.00 33.71 3.32
1586 1591 4.063689 TCCGCGGTTACTTCAAAATAACA 58.936 39.130 27.15 0.00 33.71 2.41
1587 1592 4.397382 GTCCGCGGTTACTTCAAAATAAC 58.603 43.478 27.15 6.56 0.00 1.89
1588 1593 3.123284 CGTCCGCGGTTACTTCAAAATAA 59.877 43.478 27.15 0.00 0.00 1.40
1589 1594 2.667481 CGTCCGCGGTTACTTCAAAATA 59.333 45.455 27.15 0.00 0.00 1.40
1590 1595 1.461897 CGTCCGCGGTTACTTCAAAAT 59.538 47.619 27.15 0.00 0.00 1.82
1591 1596 0.860533 CGTCCGCGGTTACTTCAAAA 59.139 50.000 27.15 0.00 0.00 2.44
1592 1597 1.559149 GCGTCCGCGGTTACTTCAAA 61.559 55.000 27.15 0.00 38.78 2.69
1593 1598 2.023223 GCGTCCGCGGTTACTTCAA 61.023 57.895 27.15 0.00 38.78 2.69
1594 1599 2.431260 GCGTCCGCGGTTACTTCA 60.431 61.111 27.15 0.00 38.78 3.02
1595 1600 3.184003 GGCGTCCGCGGTTACTTC 61.184 66.667 27.15 10.85 43.06 3.01
1624 1629 1.458588 CCTAGGAGAGAGGTGGGCC 60.459 68.421 1.05 0.00 0.00 5.80
1625 1630 1.311747 ACCTAGGAGAGAGGTGGGC 59.688 63.158 17.98 0.00 45.90 5.36
1630 1635 1.566703 TGAGACCACCTAGGAGAGAGG 59.433 57.143 17.98 11.16 41.22 3.69
1631 1636 3.020984 GTTGAGACCACCTAGGAGAGAG 58.979 54.545 17.98 1.19 41.22 3.20
1632 1637 2.291670 GGTTGAGACCACCTAGGAGAGA 60.292 54.545 17.98 0.00 45.77 3.10
1633 1638 2.104170 GGTTGAGACCACCTAGGAGAG 58.896 57.143 17.98 5.82 45.77 3.20
1634 1639 2.233305 GGTTGAGACCACCTAGGAGA 57.767 55.000 17.98 0.00 45.77 3.71
1644 1649 1.003233 GACAGGGCAGGTTGAGACC 60.003 63.158 0.00 0.00 46.92 3.85
1645 1650 1.374758 CGACAGGGCAGGTTGAGAC 60.375 63.158 0.00 0.00 0.00 3.36
1646 1651 3.059982 CGACAGGGCAGGTTGAGA 58.940 61.111 0.00 0.00 0.00 3.27
1647 1652 2.743928 GCGACAGGGCAGGTTGAG 60.744 66.667 0.00 0.00 0.00 3.02
1648 1653 3.240134 GAGCGACAGGGCAGGTTGA 62.240 63.158 0.00 0.00 34.64 3.18
1649 1654 2.743928 GAGCGACAGGGCAGGTTG 60.744 66.667 0.00 0.00 34.64 3.77
1650 1655 4.021925 GGAGCGACAGGGCAGGTT 62.022 66.667 0.00 0.00 34.64 3.50
1652 1657 4.767255 GTGGAGCGACAGGGCAGG 62.767 72.222 0.00 0.00 34.64 4.85
1653 1658 4.767255 GGTGGAGCGACAGGGCAG 62.767 72.222 0.00 0.00 34.64 4.85
1656 1661 2.674563 TTTGTGGTGGAGCGACAGGG 62.675 60.000 0.00 0.00 37.14 4.45
1657 1662 1.227823 TTTGTGGTGGAGCGACAGG 60.228 57.895 0.00 0.00 37.14 4.00
1658 1663 0.532862 ACTTTGTGGTGGAGCGACAG 60.533 55.000 0.00 0.00 37.14 3.51
1659 1664 0.753867 TACTTTGTGGTGGAGCGACA 59.246 50.000 0.00 0.00 33.97 4.35
1660 1665 1.529865 GTTACTTTGTGGTGGAGCGAC 59.470 52.381 0.00 0.00 0.00 5.19
1661 1666 1.139256 TGTTACTTTGTGGTGGAGCGA 59.861 47.619 0.00 0.00 0.00 4.93
1662 1667 1.531149 CTGTTACTTTGTGGTGGAGCG 59.469 52.381 0.00 0.00 0.00 5.03
1663 1668 2.548480 GACTGTTACTTTGTGGTGGAGC 59.452 50.000 0.00 0.00 0.00 4.70
1664 1669 2.800544 CGACTGTTACTTTGTGGTGGAG 59.199 50.000 0.00 0.00 0.00 3.86
1665 1670 2.484065 CCGACTGTTACTTTGTGGTGGA 60.484 50.000 0.00 0.00 0.00 4.02
1666 1671 1.871039 CCGACTGTTACTTTGTGGTGG 59.129 52.381 0.00 0.00 0.00 4.61
1667 1672 1.871039 CCCGACTGTTACTTTGTGGTG 59.129 52.381 0.00 0.00 0.00 4.17
1668 1673 1.202722 CCCCGACTGTTACTTTGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
1669 1674 1.519408 CCCCGACTGTTACTTTGTGG 58.481 55.000 0.00 0.00 0.00 4.17
1670 1675 1.519408 CCCCCGACTGTTACTTTGTG 58.481 55.000 0.00 0.00 0.00 3.33
1671 1676 0.250597 GCCCCCGACTGTTACTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
1672 1677 0.958876 GGCCCCCGACTGTTACTTTG 60.959 60.000 0.00 0.00 0.00 2.77
1673 1678 1.131928 AGGCCCCCGACTGTTACTTT 61.132 55.000 0.00 0.00 0.00 2.66
1674 1679 1.131928 AAGGCCCCCGACTGTTACTT 61.132 55.000 0.00 0.00 0.00 2.24
1675 1680 1.538135 AAGGCCCCCGACTGTTACT 60.538 57.895 0.00 0.00 0.00 2.24
1676 1681 1.078637 GAAGGCCCCCGACTGTTAC 60.079 63.158 0.00 0.00 0.00 2.50
1677 1682 2.652095 CGAAGGCCCCCGACTGTTA 61.652 63.158 8.54 0.00 0.00 2.41
1678 1683 4.016706 CGAAGGCCCCCGACTGTT 62.017 66.667 8.54 0.00 0.00 3.16
1691 1696 1.993391 TGGGCCTAGGTTCCCGAAG 60.993 63.158 17.17 0.00 45.60 3.79
1692 1697 2.123180 TGGGCCTAGGTTCCCGAA 59.877 61.111 17.17 1.02 45.60 4.30
1693 1698 2.686106 GTGGGCCTAGGTTCCCGA 60.686 66.667 17.17 2.66 45.60 5.14
1694 1699 3.793888 GGTGGGCCTAGGTTCCCG 61.794 72.222 17.17 0.00 45.60 5.14
1695 1700 2.286197 AGGTGGGCCTAGGTTCCC 60.286 66.667 15.87 15.87 44.90 3.97
1704 1709 4.791069 TCCCGGTAGAGGTGGGCC 62.791 72.222 0.00 0.00 42.98 5.80
1705 1710 2.446036 ATCCCGGTAGAGGTGGGC 60.446 66.667 0.00 0.00 42.98 5.36
1706 1711 2.140792 CCATCCCGGTAGAGGTGGG 61.141 68.421 0.00 0.00 44.75 4.61
1707 1712 0.471971 ATCCATCCCGGTAGAGGTGG 60.472 60.000 0.00 0.08 35.57 4.61
1708 1713 0.681733 CATCCATCCCGGTAGAGGTG 59.318 60.000 0.00 0.00 35.57 4.00
1709 1714 0.264955 ACATCCATCCCGGTAGAGGT 59.735 55.000 0.00 0.00 35.57 3.85
1710 1715 1.070758 CAACATCCATCCCGGTAGAGG 59.929 57.143 0.00 0.00 35.57 3.69
1711 1716 1.070758 CCAACATCCATCCCGGTAGAG 59.929 57.143 0.00 0.00 35.57 2.43
1712 1717 1.128200 CCAACATCCATCCCGGTAGA 58.872 55.000 0.00 0.00 35.57 2.59
1713 1718 0.108585 CCCAACATCCATCCCGGTAG 59.891 60.000 0.00 0.00 35.57 3.18
1714 1719 1.349542 CCCCAACATCCATCCCGGTA 61.350 60.000 0.00 0.00 35.57 4.02
1715 1720 2.689691 CCCCAACATCCATCCCGGT 61.690 63.158 0.00 0.00 35.57 5.28
1716 1721 1.932156 TTCCCCAACATCCATCCCGG 61.932 60.000 0.00 0.00 0.00 5.73
1717 1722 0.751643 GTTCCCCAACATCCATCCCG 60.752 60.000 0.00 0.00 32.14 5.14
1718 1723 0.751643 CGTTCCCCAACATCCATCCC 60.752 60.000 0.00 0.00 32.14 3.85
1719 1724 0.034477 ACGTTCCCCAACATCCATCC 60.034 55.000 0.00 0.00 32.14 3.51
1720 1725 2.093128 ACTACGTTCCCCAACATCCATC 60.093 50.000 0.00 0.00 32.14 3.51
1721 1726 1.913419 ACTACGTTCCCCAACATCCAT 59.087 47.619 0.00 0.00 32.14 3.41
1722 1727 1.354101 ACTACGTTCCCCAACATCCA 58.646 50.000 0.00 0.00 32.14 3.41
1723 1728 3.615224 TTACTACGTTCCCCAACATCC 57.385 47.619 0.00 0.00 32.14 3.51
1724 1729 5.644636 TGAAATTACTACGTTCCCCAACATC 59.355 40.000 0.00 0.00 32.14 3.06
1784 1789 1.217183 ACTCTCCCCCTCGTTGCTATA 59.783 52.381 0.00 0.00 0.00 1.31
2065 2070 1.434188 CCCTGCCACCATATACCTCA 58.566 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.