Multiple sequence alignment - TraesCS2A01G003000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G003000 chr2A 100.000 3501 0 0 758 4258 1860723 1857223 0.000000e+00 6466.0
1 TraesCS2A01G003000 chr2A 100.000 507 0 0 1 507 1861480 1860974 0.000000e+00 937.0
2 TraesCS2A01G003000 chr2A 75.751 466 93 6 1819 2280 12313906 12314355 2.580000e-52 217.0
3 TraesCS2A01G003000 chr2D 93.269 3209 141 29 842 4009 1961474 1958300 0.000000e+00 4660.0
4 TraesCS2A01G003000 chr2D 100.000 29 0 0 3991 4019 1958963 1958935 2.000000e-03 54.7
5 TraesCS2A01G003000 chr2B 92.809 2962 172 18 842 3781 19741 22683 0.000000e+00 4252.0
6 TraesCS2A01G003000 chr2B 93.153 1738 81 16 2555 4258 448926 447193 0.000000e+00 2516.0
7 TraesCS2A01G003000 chr2B 92.259 1731 112 14 842 2555 451278 449553 0.000000e+00 2435.0
8 TraesCS2A01G003000 chr2B 89.399 1547 149 11 1656 3191 119882 118340 0.000000e+00 1934.0
9 TraesCS2A01G003000 chr2B 90.996 833 60 6 842 1664 121367 120540 0.000000e+00 1109.0
10 TraesCS2A01G003000 chr2B 95.000 320 16 0 3703 4022 112657 112338 1.770000e-138 503.0
11 TraesCS2A01G003000 chr2B 90.419 334 13 2 3944 4258 40286 40619 5.090000e-114 422.0
12 TraesCS2A01G003000 chr2B 97.642 212 5 0 3810 4021 22683 22894 8.700000e-97 364.0
13 TraesCS2A01G003000 chr2B 93.365 211 12 2 3491 3700 113749 113540 1.150000e-80 311.0
14 TraesCS2A01G003000 chr2B 76.267 434 96 5 1027 1455 448891 448460 1.540000e-54 224.0
15 TraesCS2A01G003000 chr2B 95.798 119 5 0 3340 3458 113864 113746 4.340000e-45 193.0
16 TraesCS2A01G003000 chr2B 94.595 37 2 0 3848 3884 447671 447635 1.650000e-04 58.4
17 TraesCS2A01G003000 chr7D 72.370 1274 297 48 1029 2280 481647 480407 6.770000e-93 351.0
18 TraesCS2A01G003000 chr7D 74.409 465 106 10 2585 3042 982265 981807 2.020000e-43 187.0
19 TraesCS2A01G003000 chr7D 72.623 610 129 26 1029 1622 982259 981672 2.630000e-37 167.0
20 TraesCS2A01G003000 chr7D 73.756 442 91 20 1046 1473 608809855 608809425 2.650000e-32 150.0
21 TraesCS2A01G003000 chr7D 74.531 373 69 14 2672 3042 915660 915312 5.740000e-29 139.0
22 TraesCS2A01G003000 chr7D 73.378 447 88 22 1045 1474 480838 480406 2.060000e-28 137.0
23 TraesCS2A01G003000 chr7D 100.000 31 0 0 951 981 983426 983396 1.650000e-04 58.4
24 TraesCS2A01G003000 chr7B 71.251 1287 291 61 1029 2280 697080072 697081314 1.970000e-63 254.0
25 TraesCS2A01G003000 chr7B 73.407 455 110 10 1029 1474 693923453 693923905 4.410000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G003000 chr2A 1857223 1861480 4257 True 3701.500000 6466 100.0000 1 4258 2 chr2A.!!$R1 4257
1 TraesCS2A01G003000 chr2D 1958300 1961474 3174 True 2357.350000 4660 96.6345 842 4019 2 chr2D.!!$R1 3177
2 TraesCS2A01G003000 chr2B 19741 22894 3153 False 2308.000000 4252 95.2255 842 4021 2 chr2B.!!$F2 3179
3 TraesCS2A01G003000 chr2B 118340 121367 3027 True 1521.500000 1934 90.1975 842 3191 2 chr2B.!!$R2 2349
4 TraesCS2A01G003000 chr2B 447193 451278 4085 True 1308.350000 2516 89.0685 842 4258 4 chr2B.!!$R3 3416
5 TraesCS2A01G003000 chr2B 112338 113864 1526 True 335.666667 503 94.7210 3340 4022 3 chr2B.!!$R1 682
6 TraesCS2A01G003000 chr7D 480406 481647 1241 True 244.000000 351 72.8740 1029 2280 2 chr7D.!!$R3 1251
7 TraesCS2A01G003000 chr7B 697080072 697081314 1242 False 254.000000 254 71.2510 1029 2280 1 chr7B.!!$F2 1251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.179108 GCGCGTTCACTCTTAGGGAT 60.179 55.0 8.43 0.0 0.00 3.85 F
1083 1092 0.105778 TTGACTGCACCACATCGACA 59.894 50.0 0.00 0.0 0.00 4.35 F
1143 1155 0.326264 AAGAGAAGCTCACCCGCATT 59.674 50.0 0.00 0.0 32.06 3.56 F
2949 4274 0.032813 ATGGGCTCATCAACAAGGGG 60.033 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1395 0.038159 CTCCGTCAAAGAAGTCGCCT 60.038 55.000 0.00 0.00 0.00 5.52 R
1887 2580 2.122056 ACCTTGTCCCTAGCCGGT 59.878 61.111 1.90 0.00 0.00 5.28 R
3103 4428 2.358267 ACCTATAGCATATAGGCGTCGC 59.642 50.000 18.63 9.22 43.80 5.19 R
4156 6486 2.683211 AAAGTTGAGGGGCAAGATGT 57.317 45.000 0.00 0.00 37.12 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.916983 AAGCATTTGTGTGTAGCAAGAA 57.083 36.364 0.00 0.00 0.00 2.52
22 23 4.916983 AGCATTTGTGTGTAGCAAGAAA 57.083 36.364 0.00 0.00 0.00 2.52
23 24 5.458041 AGCATTTGTGTGTAGCAAGAAAT 57.542 34.783 0.00 0.00 0.00 2.17
24 25 5.224888 AGCATTTGTGTGTAGCAAGAAATG 58.775 37.500 0.00 0.00 39.63 2.32
25 26 4.386652 GCATTTGTGTGTAGCAAGAAATGG 59.613 41.667 0.00 0.00 38.43 3.16
26 27 5.771469 CATTTGTGTGTAGCAAGAAATGGA 58.229 37.500 0.00 0.00 36.51 3.41
27 28 6.392354 CATTTGTGTGTAGCAAGAAATGGAT 58.608 36.000 0.00 0.00 36.51 3.41
28 29 6.403866 TTTGTGTGTAGCAAGAAATGGATT 57.596 33.333 0.00 0.00 0.00 3.01
29 30 6.403866 TTGTGTGTAGCAAGAAATGGATTT 57.596 33.333 0.00 0.00 0.00 2.17
30 31 6.403866 TGTGTGTAGCAAGAAATGGATTTT 57.596 33.333 0.00 0.00 0.00 1.82
31 32 6.446318 TGTGTGTAGCAAGAAATGGATTTTC 58.554 36.000 0.00 0.00 43.45 2.29
32 33 5.863935 GTGTGTAGCAAGAAATGGATTTTCC 59.136 40.000 0.00 0.00 44.06 3.13
33 34 5.774690 TGTGTAGCAAGAAATGGATTTTCCT 59.225 36.000 0.00 0.00 44.06 3.36
34 35 6.095377 GTGTAGCAAGAAATGGATTTTCCTG 58.905 40.000 0.00 0.00 44.06 3.86
35 36 6.009589 TGTAGCAAGAAATGGATTTTCCTGA 58.990 36.000 1.84 0.00 44.06 3.86
36 37 6.664816 TGTAGCAAGAAATGGATTTTCCTGAT 59.335 34.615 1.84 0.00 44.06 2.90
37 38 6.616237 AGCAAGAAATGGATTTTCCTGATT 57.384 33.333 1.84 0.00 44.06 2.57
38 39 6.403878 AGCAAGAAATGGATTTTCCTGATTG 58.596 36.000 1.84 0.00 44.06 2.67
39 40 5.064325 GCAAGAAATGGATTTTCCTGATTGC 59.936 40.000 6.87 6.87 44.06 3.56
40 41 6.403878 CAAGAAATGGATTTTCCTGATTGCT 58.596 36.000 0.00 0.00 44.06 3.91
41 42 7.549839 CAAGAAATGGATTTTCCTGATTGCTA 58.450 34.615 0.00 0.00 44.06 3.49
42 43 7.105241 AGAAATGGATTTTCCTGATTGCTAC 57.895 36.000 0.00 0.00 44.06 3.58
43 44 6.664816 AGAAATGGATTTTCCTGATTGCTACA 59.335 34.615 0.00 0.00 44.06 2.74
44 45 7.343833 AGAAATGGATTTTCCTGATTGCTACAT 59.656 33.333 0.00 0.00 44.06 2.29
45 46 5.840243 TGGATTTTCCTGATTGCTACATG 57.160 39.130 0.00 0.00 37.46 3.21
46 47 5.508567 TGGATTTTCCTGATTGCTACATGA 58.491 37.500 0.00 0.00 37.46 3.07
47 48 5.951148 TGGATTTTCCTGATTGCTACATGAA 59.049 36.000 0.00 0.00 37.46 2.57
48 49 6.436847 TGGATTTTCCTGATTGCTACATGAAA 59.563 34.615 0.00 0.00 37.46 2.69
49 50 7.039152 TGGATTTTCCTGATTGCTACATGAAAA 60.039 33.333 0.00 16.19 41.76 2.29
50 51 7.983484 GGATTTTCCTGATTGCTACATGAAAAT 59.017 33.333 20.73 20.73 45.46 1.82
56 57 8.773645 TCCTGATTGCTACATGAAAATAATACG 58.226 33.333 0.00 0.00 0.00 3.06
57 58 7.535258 CCTGATTGCTACATGAAAATAATACGC 59.465 37.037 0.00 0.00 0.00 4.42
58 59 8.153479 TGATTGCTACATGAAAATAATACGCT 57.847 30.769 0.00 0.00 0.00 5.07
59 60 9.267084 TGATTGCTACATGAAAATAATACGCTA 57.733 29.630 0.00 0.00 0.00 4.26
60 61 9.530129 GATTGCTACATGAAAATAATACGCTAC 57.470 33.333 0.00 0.00 0.00 3.58
61 62 8.657074 TTGCTACATGAAAATAATACGCTACT 57.343 30.769 0.00 0.00 0.00 2.57
62 63 8.657074 TGCTACATGAAAATAATACGCTACTT 57.343 30.769 0.00 0.00 0.00 2.24
63 64 8.547894 TGCTACATGAAAATAATACGCTACTTG 58.452 33.333 0.00 0.00 0.00 3.16
64 65 8.548721 GCTACATGAAAATAATACGCTACTTGT 58.451 33.333 0.00 0.00 0.00 3.16
73 74 8.991243 AATAATACGCTACTTGTTTAGTGTGA 57.009 30.769 6.61 0.00 41.77 3.58
74 75 8.991243 ATAATACGCTACTTGTTTAGTGTGAA 57.009 30.769 6.61 0.00 41.77 3.18
75 76 7.900782 AATACGCTACTTGTTTAGTGTGAAT 57.099 32.000 6.61 0.00 41.77 2.57
76 77 5.591643 ACGCTACTTGTTTAGTGTGAATG 57.408 39.130 0.00 0.00 40.53 2.67
77 78 5.294356 ACGCTACTTGTTTAGTGTGAATGA 58.706 37.500 0.00 0.00 40.53 2.57
78 79 5.176958 ACGCTACTTGTTTAGTGTGAATGAC 59.823 40.000 0.00 0.00 40.53 3.06
79 80 5.176774 CGCTACTTGTTTAGTGTGAATGACA 59.823 40.000 0.00 0.00 37.73 3.58
80 81 6.292649 CGCTACTTGTTTAGTGTGAATGACAA 60.293 38.462 0.00 0.00 37.73 3.18
81 82 7.571244 CGCTACTTGTTTAGTGTGAATGACAAT 60.571 37.037 0.00 0.00 37.73 2.71
82 83 7.746475 GCTACTTGTTTAGTGTGAATGACAATC 59.254 37.037 0.00 0.00 37.73 2.67
83 84 7.566760 ACTTGTTTAGTGTGAATGACAATCA 57.433 32.000 0.00 0.00 35.91 2.57
84 85 7.995289 ACTTGTTTAGTGTGAATGACAATCAA 58.005 30.769 0.00 0.00 35.91 2.57
85 86 8.632679 ACTTGTTTAGTGTGAATGACAATCAAT 58.367 29.630 0.00 0.00 35.91 2.57
98 99 9.829507 GAATGACAATCAATATATCCTAGAGGG 57.170 37.037 0.00 0.00 35.41 4.30
99 100 7.187824 TGACAATCAATATATCCTAGAGGGC 57.812 40.000 0.00 0.00 35.41 5.19
100 101 6.962311 TGACAATCAATATATCCTAGAGGGCT 59.038 38.462 0.00 0.00 35.41 5.19
101 102 7.124901 TGACAATCAATATATCCTAGAGGGCTC 59.875 40.741 0.00 0.00 35.41 4.70
102 103 6.962311 ACAATCAATATATCCTAGAGGGCTCA 59.038 38.462 0.00 0.00 35.41 4.26
103 104 7.125507 ACAATCAATATATCCTAGAGGGCTCAG 59.874 40.741 0.00 0.00 35.41 3.35
104 105 4.959210 TCAATATATCCTAGAGGGCTCAGC 59.041 45.833 0.00 0.00 35.41 4.26
105 106 4.898014 ATATATCCTAGAGGGCTCAGCT 57.102 45.455 0.00 0.00 35.41 4.24
106 107 2.595750 TATCCTAGAGGGCTCAGCTC 57.404 55.000 0.00 0.00 35.41 4.09
107 108 0.560193 ATCCTAGAGGGCTCAGCTCA 59.440 55.000 0.00 0.00 35.41 4.26
108 109 0.560193 TCCTAGAGGGCTCAGCTCAT 59.440 55.000 0.00 0.00 35.41 2.90
109 110 1.062581 TCCTAGAGGGCTCAGCTCATT 60.063 52.381 0.00 0.00 35.41 2.57
110 111 2.177888 TCCTAGAGGGCTCAGCTCATTA 59.822 50.000 0.00 0.00 35.41 1.90
111 112 3.172339 CCTAGAGGGCTCAGCTCATTAT 58.828 50.000 0.00 0.00 0.00 1.28
112 113 3.055963 CCTAGAGGGCTCAGCTCATTATG 60.056 52.174 0.00 0.00 0.00 1.90
113 114 2.406559 AGAGGGCTCAGCTCATTATGT 58.593 47.619 0.00 0.00 0.00 2.29
114 115 3.581101 AGAGGGCTCAGCTCATTATGTA 58.419 45.455 0.00 0.00 0.00 2.29
115 116 4.166539 AGAGGGCTCAGCTCATTATGTAT 58.833 43.478 0.00 0.00 0.00 2.29
116 117 4.222588 AGAGGGCTCAGCTCATTATGTATC 59.777 45.833 0.00 0.00 0.00 2.24
117 118 4.166539 AGGGCTCAGCTCATTATGTATCT 58.833 43.478 0.00 0.00 0.00 1.98
118 119 4.596643 AGGGCTCAGCTCATTATGTATCTT 59.403 41.667 0.00 0.00 0.00 2.40
119 120 5.072872 AGGGCTCAGCTCATTATGTATCTTT 59.927 40.000 0.00 0.00 0.00 2.52
120 121 5.180868 GGGCTCAGCTCATTATGTATCTTTG 59.819 44.000 0.00 0.00 0.00 2.77
121 122 5.180868 GGCTCAGCTCATTATGTATCTTTGG 59.819 44.000 0.00 0.00 0.00 3.28
122 123 5.762218 GCTCAGCTCATTATGTATCTTTGGT 59.238 40.000 0.00 0.00 0.00 3.67
123 124 6.073331 GCTCAGCTCATTATGTATCTTTGGTC 60.073 42.308 0.00 0.00 0.00 4.02
124 125 7.129457 TCAGCTCATTATGTATCTTTGGTCT 57.871 36.000 0.00 0.00 0.00 3.85
125 126 7.568349 TCAGCTCATTATGTATCTTTGGTCTT 58.432 34.615 0.00 0.00 0.00 3.01
126 127 8.704668 TCAGCTCATTATGTATCTTTGGTCTTA 58.295 33.333 0.00 0.00 0.00 2.10
127 128 9.499479 CAGCTCATTATGTATCTTTGGTCTTAT 57.501 33.333 0.00 0.00 0.00 1.73
137 138 9.434275 TGTATCTTTGGTCTTATAAGGATCTCA 57.566 33.333 12.54 6.71 0.00 3.27
138 139 9.921637 GTATCTTTGGTCTTATAAGGATCTCAG 57.078 37.037 12.54 3.13 0.00 3.35
139 140 8.789767 ATCTTTGGTCTTATAAGGATCTCAGA 57.210 34.615 12.54 7.83 0.00 3.27
140 141 8.789767 TCTTTGGTCTTATAAGGATCTCAGAT 57.210 34.615 12.54 0.00 0.00 2.90
141 142 8.646004 TCTTTGGTCTTATAAGGATCTCAGATG 58.354 37.037 12.54 0.00 0.00 2.90
142 143 6.924913 TGGTCTTATAAGGATCTCAGATGG 57.075 41.667 12.54 0.00 0.00 3.51
143 144 6.385443 TGGTCTTATAAGGATCTCAGATGGT 58.615 40.000 12.54 0.00 0.00 3.55
144 145 6.268617 TGGTCTTATAAGGATCTCAGATGGTG 59.731 42.308 12.54 0.00 0.00 4.17
145 146 6.295575 GGTCTTATAAGGATCTCAGATGGTGG 60.296 46.154 12.54 0.00 0.00 4.61
146 147 5.247110 TCTTATAAGGATCTCAGATGGTGGC 59.753 44.000 12.54 0.00 0.00 5.01
147 148 0.467384 AAGGATCTCAGATGGTGGCG 59.533 55.000 0.00 0.00 0.00 5.69
148 149 1.070445 GGATCTCAGATGGTGGCGG 59.930 63.158 0.00 0.00 0.00 6.13
149 150 1.596477 GATCTCAGATGGTGGCGGC 60.596 63.158 0.00 0.00 0.00 6.53
150 151 3.451556 ATCTCAGATGGTGGCGGCG 62.452 63.158 0.51 0.51 0.00 6.46
162 163 2.807895 GCGGCGCGTTCACTCTTA 60.808 61.111 19.09 0.00 0.00 2.10
163 164 2.789203 GCGGCGCGTTCACTCTTAG 61.789 63.158 19.09 0.00 0.00 2.18
164 165 2.158959 CGGCGCGTTCACTCTTAGG 61.159 63.158 8.43 0.00 0.00 2.69
165 166 1.810030 GGCGCGTTCACTCTTAGGG 60.810 63.158 8.43 0.00 0.00 3.53
166 167 1.214589 GCGCGTTCACTCTTAGGGA 59.785 57.895 8.43 0.00 0.00 4.20
167 168 0.179108 GCGCGTTCACTCTTAGGGAT 60.179 55.000 8.43 0.00 0.00 3.85
168 169 1.739371 GCGCGTTCACTCTTAGGGATT 60.739 52.381 8.43 0.00 0.00 3.01
169 170 2.480759 GCGCGTTCACTCTTAGGGATTA 60.481 50.000 8.43 0.00 0.00 1.75
170 171 3.114065 CGCGTTCACTCTTAGGGATTAC 58.886 50.000 0.00 0.00 0.00 1.89
171 172 3.455327 GCGTTCACTCTTAGGGATTACC 58.545 50.000 0.00 0.00 40.67 2.85
187 188 7.933215 GGGATTACCTCTTAAGTTGCTAAAA 57.067 36.000 1.63 0.00 35.85 1.52
188 189 8.521170 GGGATTACCTCTTAAGTTGCTAAAAT 57.479 34.615 1.63 0.00 35.85 1.82
189 190 8.967918 GGGATTACCTCTTAAGTTGCTAAAATT 58.032 33.333 1.63 0.00 35.85 1.82
261 262 9.796120 TTTTTATTCGCATAAAATTAGGGACTG 57.204 29.630 12.65 0.00 42.11 3.51
262 263 4.893424 TTCGCATAAAATTAGGGACTGC 57.107 40.909 0.00 0.00 41.52 4.40
263 264 3.879998 TCGCATAAAATTAGGGACTGCA 58.120 40.909 0.00 0.00 41.52 4.41
264 265 4.265893 TCGCATAAAATTAGGGACTGCAA 58.734 39.130 0.00 0.00 41.52 4.08
265 266 4.887071 TCGCATAAAATTAGGGACTGCAAT 59.113 37.500 0.00 0.00 41.52 3.56
266 267 4.977963 CGCATAAAATTAGGGACTGCAATG 59.022 41.667 0.00 0.00 41.52 2.82
267 268 5.221028 CGCATAAAATTAGGGACTGCAATGA 60.221 40.000 0.00 0.00 41.52 2.57
268 269 5.979517 GCATAAAATTAGGGACTGCAATGAC 59.020 40.000 0.00 0.00 41.52 3.06
269 270 6.405731 GCATAAAATTAGGGACTGCAATGACA 60.406 38.462 0.00 0.00 41.52 3.58
270 271 5.391312 AAAATTAGGGACTGCAATGACAC 57.609 39.130 0.00 0.00 41.52 3.67
271 272 3.719268 ATTAGGGACTGCAATGACACA 57.281 42.857 0.00 0.00 41.52 3.72
272 273 2.472695 TAGGGACTGCAATGACACAC 57.527 50.000 0.00 0.00 41.52 3.82
273 274 0.473755 AGGGACTGCAATGACACACA 59.526 50.000 0.00 0.00 37.18 3.72
274 275 0.593128 GGGACTGCAATGACACACAC 59.407 55.000 0.00 0.00 0.00 3.82
275 276 1.308047 GGACTGCAATGACACACACA 58.692 50.000 0.00 0.00 0.00 3.72
276 277 1.675483 GGACTGCAATGACACACACAA 59.325 47.619 0.00 0.00 0.00 3.33
277 278 2.098934 GGACTGCAATGACACACACAAA 59.901 45.455 0.00 0.00 0.00 2.83
278 279 3.428725 GGACTGCAATGACACACACAAAA 60.429 43.478 0.00 0.00 0.00 2.44
279 280 4.362279 GACTGCAATGACACACACAAAAT 58.638 39.130 0.00 0.00 0.00 1.82
280 281 4.757594 ACTGCAATGACACACACAAAATT 58.242 34.783 0.00 0.00 0.00 1.82
281 282 4.805192 ACTGCAATGACACACACAAAATTC 59.195 37.500 0.00 0.00 0.00 2.17
282 283 4.752146 TGCAATGACACACACAAAATTCA 58.248 34.783 0.00 0.00 0.00 2.57
283 284 5.358090 TGCAATGACACACACAAAATTCAT 58.642 33.333 0.00 0.00 0.00 2.57
284 285 5.234543 TGCAATGACACACACAAAATTCATG 59.765 36.000 0.00 0.00 0.00 3.07
285 286 5.672051 CAATGACACACACAAAATTCATGC 58.328 37.500 0.00 0.00 0.00 4.06
286 287 4.382345 TGACACACACAAAATTCATGCA 57.618 36.364 0.00 0.00 0.00 3.96
287 288 4.752146 TGACACACACAAAATTCATGCAA 58.248 34.783 0.00 0.00 0.00 4.08
288 289 4.804665 TGACACACACAAAATTCATGCAAG 59.195 37.500 0.00 0.00 0.00 4.01
289 290 5.008619 ACACACACAAAATTCATGCAAGA 57.991 34.783 0.00 0.00 0.00 3.02
290 291 5.045215 ACACACACAAAATTCATGCAAGAG 58.955 37.500 0.00 0.00 0.00 2.85
291 292 4.053295 ACACACAAAATTCATGCAAGAGC 58.947 39.130 0.00 0.00 42.57 4.09
310 311 9.573133 GCAAGAGCATACATTTAAAACATAGTT 57.427 29.630 0.00 0.00 41.58 2.24
314 315 9.937175 GAGCATACATTTAAAACATAGTTCTCC 57.063 33.333 0.00 0.00 0.00 3.71
315 316 8.903820 AGCATACATTTAAAACATAGTTCTCCC 58.096 33.333 0.00 0.00 0.00 4.30
316 317 8.903820 GCATACATTTAAAACATAGTTCTCCCT 58.096 33.333 0.00 0.00 0.00 4.20
319 320 8.934023 ACATTTAAAACATAGTTCTCCCTCAA 57.066 30.769 0.00 0.00 0.00 3.02
320 321 9.533831 ACATTTAAAACATAGTTCTCCCTCAAT 57.466 29.630 0.00 0.00 0.00 2.57
323 324 9.457436 TTTAAAACATAGTTCTCCCTCAATACC 57.543 33.333 0.00 0.00 0.00 2.73
324 325 6.893020 AAACATAGTTCTCCCTCAATACCT 57.107 37.500 0.00 0.00 0.00 3.08
325 326 6.893020 AACATAGTTCTCCCTCAATACCTT 57.107 37.500 0.00 0.00 0.00 3.50
326 327 6.893020 ACATAGTTCTCCCTCAATACCTTT 57.107 37.500 0.00 0.00 0.00 3.11
327 328 7.272144 ACATAGTTCTCCCTCAATACCTTTT 57.728 36.000 0.00 0.00 0.00 2.27
328 329 7.699878 ACATAGTTCTCCCTCAATACCTTTTT 58.300 34.615 0.00 0.00 0.00 1.94
376 377 9.559732 TCAAAAGTCAAACATCTCTATCTTTGA 57.440 29.630 0.00 0.00 30.41 2.69
377 378 9.604626 CAAAAGTCAAACATCTCTATCTTTGAC 57.395 33.333 12.19 12.19 44.70 3.18
378 379 7.913674 AAGTCAAACATCTCTATCTTTGACC 57.086 36.000 15.18 2.61 45.11 4.02
379 380 7.009179 AGTCAAACATCTCTATCTTTGACCA 57.991 36.000 15.18 0.00 45.11 4.02
380 381 7.453393 AGTCAAACATCTCTATCTTTGACCAA 58.547 34.615 15.18 0.00 45.11 3.67
381 382 7.605691 AGTCAAACATCTCTATCTTTGACCAAG 59.394 37.037 15.18 0.00 45.11 3.61
382 383 7.389053 GTCAAACATCTCTATCTTTGACCAAGT 59.611 37.037 9.86 0.00 41.46 3.16
383 384 7.939039 TCAAACATCTCTATCTTTGACCAAGTT 59.061 33.333 0.00 0.00 28.61 2.66
384 385 8.571336 CAAACATCTCTATCTTTGACCAAGTTT 58.429 33.333 0.00 0.00 33.66 2.66
385 386 7.678947 ACATCTCTATCTTTGACCAAGTTTG 57.321 36.000 0.00 0.00 33.66 2.93
386 387 7.227156 ACATCTCTATCTTTGACCAAGTTTGT 58.773 34.615 0.00 0.00 33.66 2.83
387 388 7.721399 ACATCTCTATCTTTGACCAAGTTTGTT 59.279 33.333 0.00 0.00 33.66 2.83
388 389 7.496529 TCTCTATCTTTGACCAAGTTTGTTG 57.503 36.000 0.00 0.00 33.66 3.33
389 390 6.486657 TCTCTATCTTTGACCAAGTTTGTTGG 59.513 38.462 2.13 2.13 44.91 3.77
390 391 6.361433 TCTATCTTTGACCAAGTTTGTTGGA 58.639 36.000 10.75 0.00 42.06 3.53
391 392 5.930837 ATCTTTGACCAAGTTTGTTGGAA 57.069 34.783 10.75 0.00 42.06 3.53
392 393 5.730296 TCTTTGACCAAGTTTGTTGGAAA 57.270 34.783 10.75 2.35 42.06 3.13
393 394 5.719173 TCTTTGACCAAGTTTGTTGGAAAG 58.281 37.500 10.75 10.24 42.06 2.62
394 395 5.245075 TCTTTGACCAAGTTTGTTGGAAAGT 59.755 36.000 10.75 0.00 42.06 2.66
395 396 6.434652 TCTTTGACCAAGTTTGTTGGAAAGTA 59.565 34.615 10.75 0.48 42.06 2.24
396 397 6.783708 TTGACCAAGTTTGTTGGAAAGTAT 57.216 33.333 10.75 0.00 42.06 2.12
397 398 6.385649 TGACCAAGTTTGTTGGAAAGTATC 57.614 37.500 10.75 0.00 42.06 2.24
398 399 5.888724 TGACCAAGTTTGTTGGAAAGTATCA 59.111 36.000 10.75 0.28 42.06 2.15
399 400 6.378564 TGACCAAGTTTGTTGGAAAGTATCAA 59.621 34.615 10.75 0.00 42.06 2.57
400 401 6.569780 ACCAAGTTTGTTGGAAAGTATCAAC 58.430 36.000 10.75 0.00 42.06 3.18
408 409 7.667043 TGTTGGAAAGTATCAACATCTACAC 57.333 36.000 4.98 0.00 45.40 2.90
409 410 7.450074 TGTTGGAAAGTATCAACATCTACACT 58.550 34.615 4.98 0.00 45.40 3.55
410 411 8.590204 TGTTGGAAAGTATCAACATCTACACTA 58.410 33.333 4.98 0.00 45.40 2.74
411 412 9.601217 GTTGGAAAGTATCAACATCTACACTAT 57.399 33.333 0.00 0.00 41.85 2.12
412 413 9.817809 TTGGAAAGTATCAACATCTACACTATC 57.182 33.333 0.00 0.00 0.00 2.08
413 414 8.977412 TGGAAAGTATCAACATCTACACTATCA 58.023 33.333 0.00 0.00 0.00 2.15
414 415 9.817809 GGAAAGTATCAACATCTACACTATCAA 57.182 33.333 0.00 0.00 0.00 2.57
488 489 9.515226 AGTTTGCTATAAAGTTGGTCAAATAGA 57.485 29.630 5.01 0.00 0.00 1.98
781 782 7.615582 TTTACTCAGCAGTTCATTCATAAGG 57.384 36.000 0.00 0.00 33.62 2.69
782 783 5.426689 ACTCAGCAGTTCATTCATAAGGA 57.573 39.130 0.00 0.00 0.00 3.36
783 784 5.809001 ACTCAGCAGTTCATTCATAAGGAA 58.191 37.500 0.00 0.00 40.46 3.36
784 785 6.240894 ACTCAGCAGTTCATTCATAAGGAAA 58.759 36.000 0.00 0.00 39.39 3.13
785 786 6.150140 ACTCAGCAGTTCATTCATAAGGAAAC 59.850 38.462 0.00 0.00 39.39 2.78
787 788 7.394016 TCAGCAGTTCATTCATAAGGAAACTA 58.606 34.615 0.00 0.00 42.68 2.24
788 789 7.882791 TCAGCAGTTCATTCATAAGGAAACTAA 59.117 33.333 0.00 0.00 42.68 2.24
789 790 8.180267 CAGCAGTTCATTCATAAGGAAACTAAG 58.820 37.037 0.00 0.00 42.68 2.18
790 791 7.337942 AGCAGTTCATTCATAAGGAAACTAAGG 59.662 37.037 0.00 0.00 42.68 2.69
791 792 7.121315 GCAGTTCATTCATAAGGAAACTAAGGT 59.879 37.037 0.00 0.00 42.68 3.50
792 793 8.669243 CAGTTCATTCATAAGGAAACTAAGGTC 58.331 37.037 0.00 0.00 42.68 3.85
793 794 8.383175 AGTTCATTCATAAGGAAACTAAGGTCA 58.617 33.333 0.00 0.00 42.68 4.02
794 795 9.010029 GTTCATTCATAAGGAAACTAAGGTCAA 57.990 33.333 0.00 0.00 42.68 3.18
795 796 9.753674 TTCATTCATAAGGAAACTAAGGTCAAT 57.246 29.630 0.00 0.00 42.68 2.57
806 807 9.549078 GGAAACTAAGGTCAATATAGAAAGAGG 57.451 37.037 0.00 0.00 0.00 3.69
808 809 9.892130 AAACTAAGGTCAATATAGAAAGAGGTG 57.108 33.333 0.00 0.00 0.00 4.00
809 810 8.024145 ACTAAGGTCAATATAGAAAGAGGTGG 57.976 38.462 0.00 0.00 0.00 4.61
810 811 6.893020 AAGGTCAATATAGAAAGAGGTGGT 57.107 37.500 0.00 0.00 0.00 4.16
811 812 6.893020 AGGTCAATATAGAAAGAGGTGGTT 57.107 37.500 0.00 0.00 0.00 3.67
812 813 6.653989 AGGTCAATATAGAAAGAGGTGGTTG 58.346 40.000 0.00 0.00 0.00 3.77
813 814 6.215636 AGGTCAATATAGAAAGAGGTGGTTGT 59.784 38.462 0.00 0.00 0.00 3.32
814 815 6.316390 GGTCAATATAGAAAGAGGTGGTTGTG 59.684 42.308 0.00 0.00 0.00 3.33
815 816 7.103641 GTCAATATAGAAAGAGGTGGTTGTGA 58.896 38.462 0.00 0.00 0.00 3.58
816 817 7.606456 GTCAATATAGAAAGAGGTGGTTGTGAA 59.394 37.037 0.00 0.00 0.00 3.18
817 818 8.328758 TCAATATAGAAAGAGGTGGTTGTGAAT 58.671 33.333 0.00 0.00 0.00 2.57
818 819 9.613428 CAATATAGAAAGAGGTGGTTGTGAATA 57.387 33.333 0.00 0.00 0.00 1.75
822 823 9.838339 ATAGAAAGAGGTGGTTGTGAATATAAG 57.162 33.333 0.00 0.00 0.00 1.73
823 824 7.918076 AGAAAGAGGTGGTTGTGAATATAAGA 58.082 34.615 0.00 0.00 0.00 2.10
824 825 8.383175 AGAAAGAGGTGGTTGTGAATATAAGAA 58.617 33.333 0.00 0.00 0.00 2.52
825 826 7.923414 AAGAGGTGGTTGTGAATATAAGAAC 57.077 36.000 0.00 0.00 0.00 3.01
826 827 7.259088 AGAGGTGGTTGTGAATATAAGAACT 57.741 36.000 0.00 0.00 0.00 3.01
827 828 7.690256 AGAGGTGGTTGTGAATATAAGAACTT 58.310 34.615 0.00 0.00 0.00 2.66
828 829 7.607991 AGAGGTGGTTGTGAATATAAGAACTTG 59.392 37.037 0.00 0.00 0.00 3.16
829 830 7.231467 AGGTGGTTGTGAATATAAGAACTTGT 58.769 34.615 0.00 0.00 0.00 3.16
830 831 8.380099 AGGTGGTTGTGAATATAAGAACTTGTA 58.620 33.333 0.00 0.00 0.00 2.41
831 832 8.448615 GGTGGTTGTGAATATAAGAACTTGTAC 58.551 37.037 0.00 0.00 0.00 2.90
832 833 8.448615 GTGGTTGTGAATATAAGAACTTGTACC 58.551 37.037 0.00 0.00 0.00 3.34
833 834 8.380099 TGGTTGTGAATATAAGAACTTGTACCT 58.620 33.333 0.00 0.00 0.00 3.08
834 835 9.227777 GGTTGTGAATATAAGAACTTGTACCTT 57.772 33.333 0.00 0.00 0.00 3.50
837 838 9.653287 TGTGAATATAAGAACTTGTACCTTCTG 57.347 33.333 0.00 0.00 0.00 3.02
838 839 9.654663 GTGAATATAAGAACTTGTACCTTCTGT 57.345 33.333 0.00 0.00 0.00 3.41
839 840 9.653287 TGAATATAAGAACTTGTACCTTCTGTG 57.347 33.333 0.00 0.00 0.00 3.66
840 841 8.494016 AATATAAGAACTTGTACCTTCTGTGC 57.506 34.615 0.00 0.00 0.00 4.57
865 866 6.465781 CACTTACATTTTTATGTGCAGCTACG 59.534 38.462 0.00 0.00 36.08 3.51
872 873 1.710013 ATGTGCAGCTACGTACACAC 58.290 50.000 16.23 10.82 45.04 3.82
921 922 2.225255 GTCTGTGGCTCTCTTTTTGCTC 59.775 50.000 0.00 0.00 0.00 4.26
935 936 5.710099 TCTTTTTGCTCGATTTCCCTTACAT 59.290 36.000 0.00 0.00 0.00 2.29
942 943 5.635700 GCTCGATTTCCCTTACATATGAGTC 59.364 44.000 10.38 0.00 0.00 3.36
984 993 4.943093 ACATCTACACATGCATGCAGTTAA 59.057 37.500 26.69 15.51 0.00 2.01
991 1000 3.707611 ACATGCATGCAGTTAATTCCCAT 59.292 39.130 26.69 0.84 0.00 4.00
1033 1042 1.192428 GGATGGACGTACAGGGAAGT 58.808 55.000 6.62 0.00 0.00 3.01
1083 1092 0.105778 TTGACTGCACCACATCGACA 59.894 50.000 0.00 0.00 0.00 4.35
1143 1155 0.326264 AAGAGAAGCTCACCCGCATT 59.674 50.000 0.00 0.00 32.06 3.56
1380 1395 3.304911 TCTGATGGGTTGGTCAACAAA 57.695 42.857 14.69 3.71 41.58 2.83
1428 1444 2.047844 CTCTCCAGTGTGCCCGTG 60.048 66.667 0.00 0.00 0.00 4.94
1479 1495 9.658799 GCATATAACCATGTATGTATCTGACTT 57.341 33.333 0.00 0.00 34.22 3.01
1504 1523 8.838649 TGAGCTAAGCCAGTCCATATAATATA 57.161 34.615 0.00 0.00 0.00 0.86
1697 2382 1.202639 ACCACGATGCACAGTGAGAAA 60.203 47.619 20.92 0.00 40.56 2.52
1725 2410 7.182760 TCCTAGTCCCACTTCAGGTATATATG 58.817 42.308 0.00 0.00 0.00 1.78
1731 2418 6.770785 TCCCACTTCAGGTATATATGCAAAAC 59.229 38.462 3.10 0.00 0.00 2.43
1747 2434 3.131046 GCAAAACCATCCGATCCAATCTT 59.869 43.478 0.00 0.00 0.00 2.40
1801 2493 8.506168 TCCTAGGAAACAAACATATGATTGAC 57.494 34.615 26.83 17.70 32.92 3.18
1887 2580 4.321156 GCATTTGATTGCACTACCTTGACA 60.321 41.667 0.00 0.00 42.31 3.58
1917 2610 2.550208 GGACAAGGTGAATCGTGAGGTT 60.550 50.000 0.00 0.00 36.94 3.50
1954 2647 6.279882 CAAAAGAAGCTAACCCAATTTGTGA 58.720 36.000 0.00 0.00 0.00 3.58
2314 3010 9.605951 ATTTACTCTAATCCAAATTATGCCCAT 57.394 29.630 0.00 0.00 0.00 4.00
2416 3112 1.599797 CACGTTTCACACCCTCCCC 60.600 63.158 0.00 0.00 0.00 4.81
2534 3230 8.090831 CCCGATCTGAATTCAAGAGTAATCATA 58.909 37.037 9.88 0.00 0.00 2.15
2608 3933 0.178903 AGGGAAGTGGCCACTAGACA 60.179 55.000 37.89 0.00 41.58 3.41
2640 3965 4.454161 GTGTATGCATTTGACAGTACCACA 59.546 41.667 3.54 0.00 0.00 4.17
2707 4032 2.136298 AGAGAAGCTCATCCGTCTCA 57.864 50.000 12.23 0.00 41.07 3.27
2937 4262 1.068921 GCTCTTCTCCGATGGGCTC 59.931 63.158 0.00 0.00 31.63 4.70
2949 4274 0.032813 ATGGGCTCATCAACAAGGGG 60.033 55.000 0.00 0.00 0.00 4.79
3102 4427 7.545362 AGTAATTACATCAACTCACTCATGC 57.455 36.000 17.65 0.00 0.00 4.06
3103 4428 5.475273 AATTACATCAACTCACTCATGCG 57.525 39.130 0.00 0.00 0.00 4.73
3104 4429 1.081892 ACATCAACTCACTCATGCGC 58.918 50.000 0.00 0.00 0.00 6.09
3263 4589 2.099921 CACGAGATCCACCTAGTCCAAG 59.900 54.545 0.00 0.00 0.00 3.61
3270 4596 2.045885 TCCACCTAGTCCAAGATTCCCT 59.954 50.000 0.00 0.00 0.00 4.20
3284 4610 8.826765 TCCAAGATTCCCTATTCAGGTAATATC 58.173 37.037 0.00 0.00 40.79 1.63
3323 4658 7.778470 ATTCTCCGCAAAGAAAATAGAGTAG 57.222 36.000 2.22 0.00 38.69 2.57
3486 4827 2.133641 GCCACCTTTGCCACCAAGT 61.134 57.895 0.00 0.00 31.52 3.16
3531 4872 1.544246 TCGAATCGTCACCACTCACAT 59.456 47.619 1.52 0.00 0.00 3.21
3544 4885 2.093288 CACTCACATGGCTCACCTACAT 60.093 50.000 0.00 0.00 36.63 2.29
3587 4934 2.138596 TTTCGGCCCGTATCGAATAC 57.861 50.000 1.63 0.00 43.49 1.89
3598 4945 4.494350 GTATCGAATACGGCAGTCCTAA 57.506 45.455 0.00 0.00 40.21 2.69
3599 4946 5.056894 GTATCGAATACGGCAGTCCTAAT 57.943 43.478 0.00 0.00 40.21 1.73
3600 4947 4.602340 ATCGAATACGGCAGTCCTAATT 57.398 40.909 0.00 0.00 40.21 1.40
3601 4948 4.395959 TCGAATACGGCAGTCCTAATTT 57.604 40.909 0.00 0.00 40.21 1.82
3602 4949 4.761975 TCGAATACGGCAGTCCTAATTTT 58.238 39.130 0.00 0.00 40.21 1.82
3708 5953 9.768215 TCTATCAAGTTTCCCCTTAATTTGAAT 57.232 29.630 0.00 0.00 35.68 2.57
3753 5998 7.356089 ACATACAGTTCTAATATTGGTCCGA 57.644 36.000 0.00 0.00 0.00 4.55
3756 6001 9.574458 CATACAGTTCTAATATTGGTCCGATAG 57.426 37.037 5.06 0.00 0.00 2.08
3780 6025 5.380043 GGTCAAGAATGATGGTCCATACAT 58.620 41.667 3.72 7.56 38.01 2.29
3782 6027 6.428159 GGTCAAGAATGATGGTCCATACATAC 59.572 42.308 3.72 5.32 38.01 2.39
3784 6029 7.172190 GTCAAGAATGATGGTCCATACATACAG 59.828 40.741 3.72 3.10 38.01 2.74
3785 6030 6.753913 AGAATGATGGTCCATACATACAGT 57.246 37.500 3.72 0.00 0.00 3.55
3786 6031 7.141758 AGAATGATGGTCCATACATACAGTT 57.858 36.000 3.72 0.00 0.00 3.16
3787 6032 7.220030 AGAATGATGGTCCATACATACAGTTC 58.780 38.462 3.72 5.67 0.00 3.01
3789 6034 7.855784 ATGATGGTCCATACATACAGTTCTA 57.144 36.000 3.72 0.00 0.00 2.10
3790 6035 7.669089 TGATGGTCCATACATACAGTTCTAA 57.331 36.000 3.72 0.00 0.00 2.10
3791 6036 7.497595 TGATGGTCCATACATACAGTTCTAAC 58.502 38.462 3.72 0.00 0.00 2.34
3792 6037 6.229936 TGGTCCATACATACAGTTCTAACC 57.770 41.667 0.00 0.00 0.00 2.85
3837 6126 2.142319 GCCGCAACCATGACAATTTTT 58.858 42.857 0.00 0.00 0.00 1.94
3846 6135 7.115378 GCAACCATGACAATTTTTACTTCTCAG 59.885 37.037 0.00 0.00 0.00 3.35
4056 6386 1.135546 ACACGCAGACGAGAGATCTTG 60.136 52.381 0.00 0.00 43.93 3.02
4091 6421 7.881232 CGGGATACTAGAAGAGAGAATTCTACT 59.119 40.741 8.25 8.29 38.05 2.57
4156 6486 7.571025 AGTTCCTTAAGTTTACAAGAAGTCCA 58.429 34.615 0.97 0.00 0.00 4.02
4162 6492 8.974060 TTAAGTTTACAAGAAGTCCACATCTT 57.026 30.769 0.00 0.00 34.62 2.40
4206 6536 9.354673 GGATGAATTTTAGTCCCTCATATTTCA 57.645 33.333 0.00 0.00 0.00 2.69
4240 6570 7.495606 AGGCATTTTGTGTAAAAAGAAAGAAGG 59.504 33.333 0.00 0.00 39.09 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.916983 TTCTTGCTACACACAAATGCTT 57.083 36.364 0.00 0.00 0.00 3.91
1 2 4.916983 TTTCTTGCTACACACAAATGCT 57.083 36.364 0.00 0.00 0.00 3.79
2 3 4.386652 CCATTTCTTGCTACACACAAATGC 59.613 41.667 0.00 0.00 37.41 3.56
3 4 5.771469 TCCATTTCTTGCTACACACAAATG 58.229 37.500 0.00 0.00 37.96 2.32
4 5 6.594788 ATCCATTTCTTGCTACACACAAAT 57.405 33.333 0.00 0.00 0.00 2.32
5 6 6.403866 AATCCATTTCTTGCTACACACAAA 57.596 33.333 0.00 0.00 0.00 2.83
6 7 6.403866 AAATCCATTTCTTGCTACACACAA 57.596 33.333 0.00 0.00 0.00 3.33
7 8 6.403866 AAAATCCATTTCTTGCTACACACA 57.596 33.333 0.00 0.00 0.00 3.72
8 9 5.863935 GGAAAATCCATTTCTTGCTACACAC 59.136 40.000 1.47 0.00 45.57 3.82
9 10 5.774690 AGGAAAATCCATTTCTTGCTACACA 59.225 36.000 0.00 0.00 45.57 3.72
10 11 6.095377 CAGGAAAATCCATTTCTTGCTACAC 58.905 40.000 0.00 0.00 44.77 2.90
11 12 6.271488 CAGGAAAATCCATTTCTTGCTACA 57.729 37.500 0.00 0.00 44.77 2.74
17 18 6.616237 AGCAATCAGGAAAATCCATTTCTT 57.384 33.333 0.00 0.00 45.57 2.52
18 19 6.664816 TGTAGCAATCAGGAAAATCCATTTCT 59.335 34.615 0.00 0.00 45.57 2.52
19 20 6.866480 TGTAGCAATCAGGAAAATCCATTTC 58.134 36.000 0.00 0.00 45.55 2.17
20 21 6.855763 TGTAGCAATCAGGAAAATCCATTT 57.144 33.333 0.00 0.00 39.61 2.32
21 22 6.608405 TCATGTAGCAATCAGGAAAATCCATT 59.392 34.615 0.00 0.00 39.61 3.16
22 23 6.131264 TCATGTAGCAATCAGGAAAATCCAT 58.869 36.000 0.00 0.00 39.61 3.41
23 24 5.508567 TCATGTAGCAATCAGGAAAATCCA 58.491 37.500 0.00 0.00 39.61 3.41
24 25 6.455360 TTCATGTAGCAATCAGGAAAATCC 57.545 37.500 0.00 0.00 33.72 3.01
30 31 8.773645 CGTATTATTTTCATGTAGCAATCAGGA 58.226 33.333 0.00 0.00 0.00 3.86
31 32 7.535258 GCGTATTATTTTCATGTAGCAATCAGG 59.465 37.037 0.00 0.00 0.00 3.86
32 33 8.285394 AGCGTATTATTTTCATGTAGCAATCAG 58.715 33.333 0.00 0.00 0.00 2.90
33 34 8.153479 AGCGTATTATTTTCATGTAGCAATCA 57.847 30.769 0.00 0.00 0.00 2.57
34 35 9.530129 GTAGCGTATTATTTTCATGTAGCAATC 57.470 33.333 0.00 0.00 0.00 2.67
35 36 9.273016 AGTAGCGTATTATTTTCATGTAGCAAT 57.727 29.630 0.00 0.00 0.00 3.56
36 37 8.657074 AGTAGCGTATTATTTTCATGTAGCAA 57.343 30.769 0.00 0.00 0.00 3.91
37 38 8.547894 CAAGTAGCGTATTATTTTCATGTAGCA 58.452 33.333 0.00 0.00 0.00 3.49
38 39 8.548721 ACAAGTAGCGTATTATTTTCATGTAGC 58.451 33.333 0.00 0.00 0.00 3.58
47 48 9.426837 TCACACTAAACAAGTAGCGTATTATTT 57.573 29.630 0.00 0.00 35.76 1.40
48 49 8.991243 TCACACTAAACAAGTAGCGTATTATT 57.009 30.769 0.00 0.00 35.76 1.40
49 50 8.991243 TTCACACTAAACAAGTAGCGTATTAT 57.009 30.769 0.00 0.00 35.76 1.28
50 51 8.865978 CATTCACACTAAACAAGTAGCGTATTA 58.134 33.333 0.00 0.00 35.76 0.98
51 52 7.601130 TCATTCACACTAAACAAGTAGCGTATT 59.399 33.333 0.00 0.00 35.76 1.89
52 53 7.063074 GTCATTCACACTAAACAAGTAGCGTAT 59.937 37.037 0.00 0.00 35.76 3.06
53 54 6.364165 GTCATTCACACTAAACAAGTAGCGTA 59.636 38.462 0.00 0.00 35.76 4.42
54 55 5.176958 GTCATTCACACTAAACAAGTAGCGT 59.823 40.000 0.00 0.00 35.76 5.07
55 56 5.176774 TGTCATTCACACTAAACAAGTAGCG 59.823 40.000 0.00 0.00 35.76 4.26
56 57 6.539649 TGTCATTCACACTAAACAAGTAGC 57.460 37.500 0.00 0.00 35.76 3.58
57 58 8.773645 TGATTGTCATTCACACTAAACAAGTAG 58.226 33.333 0.00 0.00 35.76 2.57
58 59 8.669946 TGATTGTCATTCACACTAAACAAGTA 57.330 30.769 0.00 0.00 35.76 2.24
59 60 7.566760 TGATTGTCATTCACACTAAACAAGT 57.433 32.000 0.00 0.00 39.81 3.16
72 73 9.829507 CCCTCTAGGATATATTGATTGTCATTC 57.170 37.037 0.00 0.00 38.24 2.67
73 74 8.270744 GCCCTCTAGGATATATTGATTGTCATT 58.729 37.037 0.00 0.00 38.24 2.57
74 75 7.626890 AGCCCTCTAGGATATATTGATTGTCAT 59.373 37.037 0.00 0.00 38.24 3.06
75 76 6.962311 AGCCCTCTAGGATATATTGATTGTCA 59.038 38.462 0.00 0.00 38.24 3.58
76 77 7.124901 TGAGCCCTCTAGGATATATTGATTGTC 59.875 40.741 0.00 0.00 38.24 3.18
77 78 6.962311 TGAGCCCTCTAGGATATATTGATTGT 59.038 38.462 0.00 0.00 38.24 2.71
78 79 7.429374 TGAGCCCTCTAGGATATATTGATTG 57.571 40.000 0.00 0.00 38.24 2.67
79 80 6.099557 GCTGAGCCCTCTAGGATATATTGATT 59.900 42.308 0.00 0.00 38.24 2.57
80 81 5.602145 GCTGAGCCCTCTAGGATATATTGAT 59.398 44.000 0.00 0.00 38.24 2.57
81 82 4.959210 GCTGAGCCCTCTAGGATATATTGA 59.041 45.833 0.00 0.00 38.24 2.57
82 83 4.961730 AGCTGAGCCCTCTAGGATATATTG 59.038 45.833 0.00 0.00 38.24 1.90
83 84 5.208121 GAGCTGAGCCCTCTAGGATATATT 58.792 45.833 0.00 0.00 38.24 1.28
84 85 4.231658 TGAGCTGAGCCCTCTAGGATATAT 59.768 45.833 0.00 0.00 38.24 0.86
85 86 3.593780 TGAGCTGAGCCCTCTAGGATATA 59.406 47.826 0.00 0.00 38.24 0.86
86 87 2.381618 TGAGCTGAGCCCTCTAGGATAT 59.618 50.000 0.00 0.00 38.24 1.63
87 88 1.783365 TGAGCTGAGCCCTCTAGGATA 59.217 52.381 0.00 0.00 38.24 2.59
88 89 0.560193 TGAGCTGAGCCCTCTAGGAT 59.440 55.000 0.00 0.00 38.24 3.24
89 90 0.560193 ATGAGCTGAGCCCTCTAGGA 59.440 55.000 0.00 0.00 38.24 2.94
90 91 1.422531 AATGAGCTGAGCCCTCTAGG 58.577 55.000 0.00 0.00 39.47 3.02
91 92 3.577848 ACATAATGAGCTGAGCCCTCTAG 59.422 47.826 0.00 0.00 0.00 2.43
92 93 3.581101 ACATAATGAGCTGAGCCCTCTA 58.419 45.455 0.00 0.00 0.00 2.43
93 94 2.406559 ACATAATGAGCTGAGCCCTCT 58.593 47.619 0.00 0.00 0.00 3.69
94 95 2.926778 ACATAATGAGCTGAGCCCTC 57.073 50.000 0.00 0.00 0.00 4.30
95 96 4.166539 AGATACATAATGAGCTGAGCCCT 58.833 43.478 0.00 0.00 0.00 5.19
96 97 4.550076 AGATACATAATGAGCTGAGCCC 57.450 45.455 0.00 0.00 0.00 5.19
97 98 5.180868 CCAAAGATACATAATGAGCTGAGCC 59.819 44.000 0.00 0.00 0.00 4.70
98 99 5.762218 ACCAAAGATACATAATGAGCTGAGC 59.238 40.000 0.00 0.00 0.00 4.26
99 100 7.215789 AGACCAAAGATACATAATGAGCTGAG 58.784 38.462 0.00 0.00 0.00 3.35
100 101 7.129457 AGACCAAAGATACATAATGAGCTGA 57.871 36.000 0.00 0.00 0.00 4.26
101 102 7.798596 AAGACCAAAGATACATAATGAGCTG 57.201 36.000 0.00 0.00 0.00 4.24
111 112 9.434275 TGAGATCCTTATAAGACCAAAGATACA 57.566 33.333 14.28 7.79 0.00 2.29
112 113 9.921637 CTGAGATCCTTATAAGACCAAAGATAC 57.078 37.037 14.28 5.77 0.00 2.24
113 114 9.883293 TCTGAGATCCTTATAAGACCAAAGATA 57.117 33.333 14.28 0.00 0.00 1.98
114 115 8.789767 TCTGAGATCCTTATAAGACCAAAGAT 57.210 34.615 14.28 6.70 0.00 2.40
115 116 8.646004 CATCTGAGATCCTTATAAGACCAAAGA 58.354 37.037 14.28 9.42 0.00 2.52
116 117 7.877097 CCATCTGAGATCCTTATAAGACCAAAG 59.123 40.741 14.28 4.75 0.00 2.77
117 118 7.348274 ACCATCTGAGATCCTTATAAGACCAAA 59.652 37.037 14.28 0.00 0.00 3.28
118 119 6.846505 ACCATCTGAGATCCTTATAAGACCAA 59.153 38.462 14.28 0.00 0.00 3.67
119 120 6.268617 CACCATCTGAGATCCTTATAAGACCA 59.731 42.308 14.28 3.70 0.00 4.02
120 121 6.295575 CCACCATCTGAGATCCTTATAAGACC 60.296 46.154 14.28 2.80 0.00 3.85
121 122 6.696411 CCACCATCTGAGATCCTTATAAGAC 58.304 44.000 14.28 5.32 0.00 3.01
122 123 5.247110 GCCACCATCTGAGATCCTTATAAGA 59.753 44.000 14.28 0.88 0.00 2.10
123 124 5.486526 GCCACCATCTGAGATCCTTATAAG 58.513 45.833 5.43 5.43 0.00 1.73
124 125 4.021104 CGCCACCATCTGAGATCCTTATAA 60.021 45.833 0.00 0.00 0.00 0.98
125 126 3.511540 CGCCACCATCTGAGATCCTTATA 59.488 47.826 0.00 0.00 0.00 0.98
126 127 2.301296 CGCCACCATCTGAGATCCTTAT 59.699 50.000 0.00 0.00 0.00 1.73
127 128 1.688735 CGCCACCATCTGAGATCCTTA 59.311 52.381 0.00 0.00 0.00 2.69
128 129 0.467384 CGCCACCATCTGAGATCCTT 59.533 55.000 0.00 0.00 0.00 3.36
129 130 1.406065 CCGCCACCATCTGAGATCCT 61.406 60.000 0.00 0.00 0.00 3.24
130 131 1.070445 CCGCCACCATCTGAGATCC 59.930 63.158 0.00 0.00 0.00 3.36
131 132 1.596477 GCCGCCACCATCTGAGATC 60.596 63.158 0.00 0.00 0.00 2.75
132 133 2.507944 GCCGCCACCATCTGAGAT 59.492 61.111 0.00 0.00 0.00 2.75
133 134 4.147449 CGCCGCCACCATCTGAGA 62.147 66.667 0.00 0.00 0.00 3.27
145 146 2.789203 CTAAGAGTGAACGCGCCGC 61.789 63.158 5.73 0.00 0.00 6.53
146 147 2.158959 CCTAAGAGTGAACGCGCCG 61.159 63.158 5.73 0.00 0.00 6.46
147 148 1.810030 CCCTAAGAGTGAACGCGCC 60.810 63.158 5.73 0.00 0.00 6.53
148 149 0.179108 ATCCCTAAGAGTGAACGCGC 60.179 55.000 5.73 0.00 0.00 6.86
149 150 2.295253 AATCCCTAAGAGTGAACGCG 57.705 50.000 3.53 3.53 0.00 6.01
150 151 3.132467 AGGTAATCCCTAAGAGTGAACGC 59.868 47.826 0.00 0.00 43.87 4.84
151 152 4.645588 AGAGGTAATCCCTAAGAGTGAACG 59.354 45.833 0.00 0.00 46.51 3.95
152 153 6.547930 AAGAGGTAATCCCTAAGAGTGAAC 57.452 41.667 0.00 0.00 46.51 3.18
153 154 7.899709 ACTTAAGAGGTAATCCCTAAGAGTGAA 59.100 37.037 10.09 0.00 46.51 3.18
154 155 7.420029 ACTTAAGAGGTAATCCCTAAGAGTGA 58.580 38.462 10.09 0.00 46.51 3.41
155 156 7.663043 ACTTAAGAGGTAATCCCTAAGAGTG 57.337 40.000 10.09 0.00 46.51 3.51
156 157 7.364851 GCAACTTAAGAGGTAATCCCTAAGAGT 60.365 40.741 10.09 0.00 46.51 3.24
157 158 6.987404 GCAACTTAAGAGGTAATCCCTAAGAG 59.013 42.308 10.09 0.00 46.51 2.85
158 159 6.672657 AGCAACTTAAGAGGTAATCCCTAAGA 59.327 38.462 10.09 0.00 46.51 2.10
159 160 6.890293 AGCAACTTAAGAGGTAATCCCTAAG 58.110 40.000 10.09 0.00 46.51 2.18
160 161 6.886178 AGCAACTTAAGAGGTAATCCCTAA 57.114 37.500 10.09 0.00 46.51 2.69
161 162 7.983166 TTAGCAACTTAAGAGGTAATCCCTA 57.017 36.000 10.09 0.00 46.51 3.53
163 164 7.933215 TTTTAGCAACTTAAGAGGTAATCCC 57.067 36.000 10.09 0.00 0.00 3.85
235 236 9.796120 CAGTCCCTAATTTTATGCGAATAAAAA 57.204 29.630 22.17 8.68 38.84 1.94
236 237 7.918562 GCAGTCCCTAATTTTATGCGAATAAAA 59.081 33.333 20.93 20.93 39.44 1.52
237 238 7.067615 TGCAGTCCCTAATTTTATGCGAATAAA 59.932 33.333 4.35 4.35 35.00 1.40
238 239 6.544197 TGCAGTCCCTAATTTTATGCGAATAA 59.456 34.615 0.00 0.00 35.00 1.40
239 240 6.058833 TGCAGTCCCTAATTTTATGCGAATA 58.941 36.000 0.00 0.00 35.00 1.75
240 241 4.887071 TGCAGTCCCTAATTTTATGCGAAT 59.113 37.500 0.00 0.00 35.00 3.34
241 242 4.265893 TGCAGTCCCTAATTTTATGCGAA 58.734 39.130 0.00 0.00 35.00 4.70
242 243 3.879998 TGCAGTCCCTAATTTTATGCGA 58.120 40.909 0.00 0.00 35.00 5.10
243 244 4.630894 TTGCAGTCCCTAATTTTATGCG 57.369 40.909 0.00 0.00 35.00 4.73
244 245 5.979517 GTCATTGCAGTCCCTAATTTTATGC 59.020 40.000 0.00 0.00 0.00 3.14
245 246 6.974622 GTGTCATTGCAGTCCCTAATTTTATG 59.025 38.462 0.00 0.00 0.00 1.90
246 247 6.663093 TGTGTCATTGCAGTCCCTAATTTTAT 59.337 34.615 0.00 0.00 0.00 1.40
247 248 6.007076 TGTGTCATTGCAGTCCCTAATTTTA 58.993 36.000 0.00 0.00 0.00 1.52
248 249 4.832266 TGTGTCATTGCAGTCCCTAATTTT 59.168 37.500 0.00 0.00 0.00 1.82
249 250 4.218417 GTGTGTCATTGCAGTCCCTAATTT 59.782 41.667 0.00 0.00 0.00 1.82
250 251 3.758554 GTGTGTCATTGCAGTCCCTAATT 59.241 43.478 0.00 0.00 0.00 1.40
251 252 3.244875 TGTGTGTCATTGCAGTCCCTAAT 60.245 43.478 0.00 0.00 0.00 1.73
252 253 2.105649 TGTGTGTCATTGCAGTCCCTAA 59.894 45.455 0.00 0.00 0.00 2.69
253 254 1.696884 TGTGTGTCATTGCAGTCCCTA 59.303 47.619 0.00 0.00 0.00 3.53
254 255 0.473755 TGTGTGTCATTGCAGTCCCT 59.526 50.000 0.00 0.00 0.00 4.20
255 256 0.593128 GTGTGTGTCATTGCAGTCCC 59.407 55.000 0.00 0.00 0.00 4.46
256 257 1.308047 TGTGTGTGTCATTGCAGTCC 58.692 50.000 0.00 0.00 0.00 3.85
257 258 3.419264 TTTGTGTGTGTCATTGCAGTC 57.581 42.857 0.00 0.00 0.00 3.51
258 259 3.865011 TTTTGTGTGTGTCATTGCAGT 57.135 38.095 0.00 0.00 0.00 4.40
259 260 4.804665 TGAATTTTGTGTGTGTCATTGCAG 59.195 37.500 0.00 0.00 0.00 4.41
260 261 4.752146 TGAATTTTGTGTGTGTCATTGCA 58.248 34.783 0.00 0.00 0.00 4.08
261 262 5.672051 CATGAATTTTGTGTGTGTCATTGC 58.328 37.500 0.00 0.00 0.00 3.56
262 263 5.234543 TGCATGAATTTTGTGTGTGTCATTG 59.765 36.000 0.00 0.00 0.00 2.82
263 264 5.358090 TGCATGAATTTTGTGTGTGTCATT 58.642 33.333 0.00 0.00 0.00 2.57
264 265 4.946445 TGCATGAATTTTGTGTGTGTCAT 58.054 34.783 0.00 0.00 0.00 3.06
265 266 4.382345 TGCATGAATTTTGTGTGTGTCA 57.618 36.364 0.00 0.00 0.00 3.58
266 267 5.042593 TCTTGCATGAATTTTGTGTGTGTC 58.957 37.500 0.00 0.00 0.00 3.67
267 268 5.008619 TCTTGCATGAATTTTGTGTGTGT 57.991 34.783 0.00 0.00 0.00 3.72
268 269 4.084745 GCTCTTGCATGAATTTTGTGTGTG 60.085 41.667 0.00 0.00 39.41 3.82
269 270 4.053295 GCTCTTGCATGAATTTTGTGTGT 58.947 39.130 0.00 0.00 39.41 3.72
270 271 4.052608 TGCTCTTGCATGAATTTTGTGTG 58.947 39.130 0.00 0.00 45.31 3.82
271 272 4.325028 TGCTCTTGCATGAATTTTGTGT 57.675 36.364 0.00 0.00 45.31 3.72
284 285 9.573133 AACTATGTTTTAAATGTATGCTCTTGC 57.427 29.630 0.00 0.00 40.20 4.01
288 289 9.937175 GGAGAACTATGTTTTAAATGTATGCTC 57.063 33.333 0.00 0.00 0.00 4.26
289 290 8.903820 GGGAGAACTATGTTTTAAATGTATGCT 58.096 33.333 0.00 0.00 0.00 3.79
290 291 8.903820 AGGGAGAACTATGTTTTAAATGTATGC 58.096 33.333 0.00 0.00 0.00 3.14
294 295 8.934023 TTGAGGGAGAACTATGTTTTAAATGT 57.066 30.769 0.00 0.00 0.00 2.71
297 298 9.457436 GGTATTGAGGGAGAACTATGTTTTAAA 57.543 33.333 0.00 0.00 0.00 1.52
298 299 8.832735 AGGTATTGAGGGAGAACTATGTTTTAA 58.167 33.333 0.00 0.00 0.00 1.52
299 300 8.388656 AGGTATTGAGGGAGAACTATGTTTTA 57.611 34.615 0.00 0.00 0.00 1.52
300 301 7.272144 AGGTATTGAGGGAGAACTATGTTTT 57.728 36.000 0.00 0.00 0.00 2.43
301 302 6.893020 AGGTATTGAGGGAGAACTATGTTT 57.107 37.500 0.00 0.00 0.00 2.83
302 303 6.893020 AAGGTATTGAGGGAGAACTATGTT 57.107 37.500 0.00 0.00 0.00 2.71
303 304 6.893020 AAAGGTATTGAGGGAGAACTATGT 57.107 37.500 0.00 0.00 0.00 2.29
350 351 9.559732 TCAAAGATAGAGATGTTTGACTTTTGA 57.440 29.630 6.24 0.00 45.48 2.69
358 359 7.678947 ACTTGGTCAAAGATAGAGATGTTTG 57.321 36.000 0.00 2.10 44.07 2.93
359 360 8.571336 CAAACTTGGTCAAAGATAGAGATGTTT 58.429 33.333 0.00 0.00 39.38 2.83
360 361 7.721399 ACAAACTTGGTCAAAGATAGAGATGTT 59.279 33.333 0.00 0.00 39.38 2.71
361 362 7.227156 ACAAACTTGGTCAAAGATAGAGATGT 58.773 34.615 0.00 0.00 39.38 3.06
362 363 7.678947 ACAAACTTGGTCAAAGATAGAGATG 57.321 36.000 0.00 0.00 39.38 2.90
363 364 7.175641 CCAACAAACTTGGTCAAAGATAGAGAT 59.824 37.037 0.00 0.00 39.38 2.75
364 365 6.486657 CCAACAAACTTGGTCAAAGATAGAGA 59.513 38.462 0.00 0.00 39.38 3.10
365 366 6.486657 TCCAACAAACTTGGTCAAAGATAGAG 59.513 38.462 0.00 0.00 40.40 2.43
366 367 6.361433 TCCAACAAACTTGGTCAAAGATAGA 58.639 36.000 0.00 0.00 40.40 1.98
367 368 6.633500 TCCAACAAACTTGGTCAAAGATAG 57.367 37.500 0.00 0.00 40.40 2.08
368 369 7.123547 ACTTTCCAACAAACTTGGTCAAAGATA 59.876 33.333 15.20 0.00 36.38 1.98
369 370 5.930837 TTCCAACAAACTTGGTCAAAGAT 57.069 34.783 0.00 0.00 40.40 2.40
370 371 5.245075 ACTTTCCAACAAACTTGGTCAAAGA 59.755 36.000 15.20 0.00 36.38 2.52
371 372 5.478407 ACTTTCCAACAAACTTGGTCAAAG 58.522 37.500 9.90 9.90 38.40 2.77
372 373 5.476091 ACTTTCCAACAAACTTGGTCAAA 57.524 34.783 0.00 0.00 40.40 2.69
373 374 6.378564 TGATACTTTCCAACAAACTTGGTCAA 59.621 34.615 0.00 0.00 40.40 3.18
374 375 5.888724 TGATACTTTCCAACAAACTTGGTCA 59.111 36.000 0.00 0.00 40.40 4.02
375 376 6.385649 TGATACTTTCCAACAAACTTGGTC 57.614 37.500 0.00 0.00 40.40 4.02
376 377 6.153680 TGTTGATACTTTCCAACAAACTTGGT 59.846 34.615 0.00 0.00 46.44 3.67
377 378 6.568869 TGTTGATACTTTCCAACAAACTTGG 58.431 36.000 0.00 0.00 46.44 3.61
385 386 7.907214 AGTGTAGATGTTGATACTTTCCAAC 57.093 36.000 0.00 0.00 42.04 3.77
386 387 9.817809 GATAGTGTAGATGTTGATACTTTCCAA 57.182 33.333 0.00 0.00 0.00 3.53
387 388 8.977412 TGATAGTGTAGATGTTGATACTTTCCA 58.023 33.333 0.00 0.00 0.00 3.53
388 389 9.817809 TTGATAGTGTAGATGTTGATACTTTCC 57.182 33.333 0.00 0.00 0.00 3.13
462 463 9.515226 TCTATTTGACCAACTTTATAGCAAACT 57.485 29.630 0.00 0.00 0.00 2.66
757 758 7.394016 TCCTTATGAATGAACTGCTGAGTAAA 58.606 34.615 0.00 0.00 0.00 2.01
758 759 6.946340 TCCTTATGAATGAACTGCTGAGTAA 58.054 36.000 0.00 0.00 0.00 2.24
759 760 6.544928 TCCTTATGAATGAACTGCTGAGTA 57.455 37.500 0.00 0.00 0.00 2.59
760 761 5.426689 TCCTTATGAATGAACTGCTGAGT 57.573 39.130 0.00 0.00 0.00 3.41
761 762 6.373774 AGTTTCCTTATGAATGAACTGCTGAG 59.626 38.462 0.00 0.00 31.67 3.35
762 763 6.240894 AGTTTCCTTATGAATGAACTGCTGA 58.759 36.000 0.00 0.00 31.67 4.26
763 764 6.506500 AGTTTCCTTATGAATGAACTGCTG 57.493 37.500 0.00 0.00 31.67 4.41
764 765 7.337942 CCTTAGTTTCCTTATGAATGAACTGCT 59.662 37.037 0.00 0.00 31.67 4.24
765 766 7.121315 ACCTTAGTTTCCTTATGAATGAACTGC 59.879 37.037 0.00 0.00 31.67 4.40
766 767 8.567285 ACCTTAGTTTCCTTATGAATGAACTG 57.433 34.615 0.00 0.00 31.67 3.16
767 768 8.383175 TGACCTTAGTTTCCTTATGAATGAACT 58.617 33.333 0.00 0.00 31.67 3.01
768 769 8.561738 TGACCTTAGTTTCCTTATGAATGAAC 57.438 34.615 0.00 0.00 31.67 3.18
769 770 9.753674 ATTGACCTTAGTTTCCTTATGAATGAA 57.246 29.630 0.00 0.00 31.67 2.57
780 781 9.549078 CCTCTTTCTATATTGACCTTAGTTTCC 57.451 37.037 0.00 0.00 0.00 3.13
782 783 9.892130 CACCTCTTTCTATATTGACCTTAGTTT 57.108 33.333 0.00 0.00 0.00 2.66
783 784 8.487028 CCACCTCTTTCTATATTGACCTTAGTT 58.513 37.037 0.00 0.00 0.00 2.24
784 785 7.624077 ACCACCTCTTTCTATATTGACCTTAGT 59.376 37.037 0.00 0.00 0.00 2.24
785 786 8.024145 ACCACCTCTTTCTATATTGACCTTAG 57.976 38.462 0.00 0.00 0.00 2.18
786 787 7.989947 ACCACCTCTTTCTATATTGACCTTA 57.010 36.000 0.00 0.00 0.00 2.69
787 788 6.893020 ACCACCTCTTTCTATATTGACCTT 57.107 37.500 0.00 0.00 0.00 3.50
788 789 6.215636 ACAACCACCTCTTTCTATATTGACCT 59.784 38.462 0.00 0.00 0.00 3.85
789 790 6.316390 CACAACCACCTCTTTCTATATTGACC 59.684 42.308 0.00 0.00 0.00 4.02
790 791 7.103641 TCACAACCACCTCTTTCTATATTGAC 58.896 38.462 0.00 0.00 0.00 3.18
791 792 7.252612 TCACAACCACCTCTTTCTATATTGA 57.747 36.000 0.00 0.00 0.00 2.57
792 793 7.921786 TTCACAACCACCTCTTTCTATATTG 57.078 36.000 0.00 0.00 0.00 1.90
796 797 9.838339 CTTATATTCACAACCACCTCTTTCTAT 57.162 33.333 0.00 0.00 0.00 1.98
797 798 9.042450 TCTTATATTCACAACCACCTCTTTCTA 57.958 33.333 0.00 0.00 0.00 2.10
798 799 7.918076 TCTTATATTCACAACCACCTCTTTCT 58.082 34.615 0.00 0.00 0.00 2.52
799 800 8.451748 GTTCTTATATTCACAACCACCTCTTTC 58.548 37.037 0.00 0.00 0.00 2.62
800 801 8.164070 AGTTCTTATATTCACAACCACCTCTTT 58.836 33.333 0.00 0.00 0.00 2.52
801 802 7.690256 AGTTCTTATATTCACAACCACCTCTT 58.310 34.615 0.00 0.00 0.00 2.85
802 803 7.259088 AGTTCTTATATTCACAACCACCTCT 57.741 36.000 0.00 0.00 0.00 3.69
803 804 7.390718 ACAAGTTCTTATATTCACAACCACCTC 59.609 37.037 0.00 0.00 0.00 3.85
804 805 7.231467 ACAAGTTCTTATATTCACAACCACCT 58.769 34.615 0.00 0.00 0.00 4.00
805 806 7.448748 ACAAGTTCTTATATTCACAACCACC 57.551 36.000 0.00 0.00 0.00 4.61
806 807 8.448615 GGTACAAGTTCTTATATTCACAACCAC 58.551 37.037 0.00 0.00 0.00 4.16
807 808 8.380099 AGGTACAAGTTCTTATATTCACAACCA 58.620 33.333 0.00 0.00 0.00 3.67
808 809 8.788325 AGGTACAAGTTCTTATATTCACAACC 57.212 34.615 0.00 0.00 0.00 3.77
811 812 9.653287 CAGAAGGTACAAGTTCTTATATTCACA 57.347 33.333 0.00 0.00 30.31 3.58
812 813 9.654663 ACAGAAGGTACAAGTTCTTATATTCAC 57.345 33.333 0.00 0.00 30.31 3.18
813 814 9.653287 CACAGAAGGTACAAGTTCTTATATTCA 57.347 33.333 0.00 0.00 30.31 2.57
814 815 8.604890 GCACAGAAGGTACAAGTTCTTATATTC 58.395 37.037 0.00 0.00 30.31 1.75
815 816 8.100791 TGCACAGAAGGTACAAGTTCTTATATT 58.899 33.333 0.00 0.00 30.31 1.28
816 817 7.549488 GTGCACAGAAGGTACAAGTTCTTATAT 59.451 37.037 13.17 0.00 30.31 0.86
817 818 6.872020 GTGCACAGAAGGTACAAGTTCTTATA 59.128 38.462 13.17 0.00 30.31 0.98
818 819 5.701290 GTGCACAGAAGGTACAAGTTCTTAT 59.299 40.000 13.17 0.00 30.31 1.73
819 820 5.054477 GTGCACAGAAGGTACAAGTTCTTA 58.946 41.667 13.17 0.00 30.31 2.10
820 821 3.877508 GTGCACAGAAGGTACAAGTTCTT 59.122 43.478 13.17 0.00 30.31 2.52
821 822 3.134804 AGTGCACAGAAGGTACAAGTTCT 59.865 43.478 21.04 0.00 33.09 3.01
822 823 3.467803 AGTGCACAGAAGGTACAAGTTC 58.532 45.455 21.04 0.00 0.00 3.01
823 824 3.560636 AGTGCACAGAAGGTACAAGTT 57.439 42.857 21.04 0.00 0.00 2.66
824 825 3.560636 AAGTGCACAGAAGGTACAAGT 57.439 42.857 21.04 0.00 0.00 3.16
825 826 4.377021 TGTAAGTGCACAGAAGGTACAAG 58.623 43.478 21.04 0.00 0.00 3.16
826 827 4.409718 TGTAAGTGCACAGAAGGTACAA 57.590 40.909 21.04 0.74 0.00 2.41
827 828 4.617253 ATGTAAGTGCACAGAAGGTACA 57.383 40.909 21.04 15.69 0.00 2.90
828 829 5.941948 AAATGTAAGTGCACAGAAGGTAC 57.058 39.130 21.04 10.93 0.00 3.34
829 830 6.952773 AAAAATGTAAGTGCACAGAAGGTA 57.047 33.333 21.04 0.00 0.00 3.08
830 831 5.852282 AAAAATGTAAGTGCACAGAAGGT 57.148 34.783 21.04 0.00 0.00 3.50
831 832 7.326789 CACATAAAAATGTAAGTGCACAGAAGG 59.673 37.037 21.04 0.00 32.74 3.46
832 833 7.148918 GCACATAAAAATGTAAGTGCACAGAAG 60.149 37.037 21.04 0.00 44.29 2.85
833 834 6.640499 GCACATAAAAATGTAAGTGCACAGAA 59.360 34.615 21.04 0.00 44.29 3.02
834 835 6.148948 GCACATAAAAATGTAAGTGCACAGA 58.851 36.000 21.04 2.62 44.29 3.41
835 836 6.380111 GCACATAAAAATGTAAGTGCACAG 57.620 37.500 21.04 0.00 44.29 3.66
839 840 5.163513 AGCTGCACATAAAAATGTAAGTGC 58.836 37.500 1.02 8.27 44.83 4.40
840 841 6.465781 CGTAGCTGCACATAAAAATGTAAGTG 59.534 38.462 1.02 0.00 32.74 3.16
904 905 1.512926 TCGAGCAAAAAGAGAGCCAC 58.487 50.000 0.00 0.00 0.00 5.01
921 922 7.786178 TTTGACTCATATGTAAGGGAAATCG 57.214 36.000 1.90 0.00 0.00 3.34
950 959 5.163953 GCATGTGTAGATGTAGTGTGTCAAC 60.164 44.000 0.00 0.00 0.00 3.18
984 993 3.397527 ACTCATAGTGGGTGATGGGAAT 58.602 45.455 0.00 0.00 23.94 3.01
1095 1104 7.016858 ACCAACCAAAAGACACTATCTACCTTA 59.983 37.037 0.00 0.00 36.27 2.69
1106 1115 2.165437 TCTTGCACCAACCAAAAGACAC 59.835 45.455 0.00 0.00 0.00 3.67
1143 1155 2.123425 CCGAGGCTGCTACCCCTA 60.123 66.667 0.00 0.00 0.00 3.53
1165 1177 2.936202 AGGGGTTGACATGACATATGC 58.064 47.619 1.58 0.00 0.00 3.14
1211 1223 4.325741 CGTTTATCTCAGCAGAGTCAACTG 59.674 45.833 5.98 6.17 42.66 3.16
1380 1395 0.038159 CTCCGTCAAAGAAGTCGCCT 60.038 55.000 0.00 0.00 0.00 5.52
1428 1444 1.072666 CGCCGAGGGTAAACGTGTAC 61.073 60.000 7.40 7.40 0.00 2.90
1479 1495 7.739995 ATATTATATGGACTGGCTTAGCTCA 57.260 36.000 3.59 0.00 0.00 4.26
1697 2382 3.532102 ACCTGAAGTGGGACTAGGATTT 58.468 45.455 0.00 0.00 32.86 2.17
1725 2410 2.689983 AGATTGGATCGGATGGTTTTGC 59.310 45.455 0.00 0.00 0.00 3.68
1731 2418 8.023021 TCCTATATTAAGATTGGATCGGATGG 57.977 38.462 8.88 0.00 0.00 3.51
1887 2580 2.122056 ACCTTGTCCCTAGCCGGT 59.878 61.111 1.90 0.00 0.00 5.28
1917 2610 4.100808 AGCTTCTTTTGCACCAACCAATAA 59.899 37.500 0.00 0.00 0.00 1.40
2608 3933 5.185442 TGTCAAATGCATACACAATCACCAT 59.815 36.000 0.00 0.00 0.00 3.55
2640 3965 6.607198 CCACAGTTTTATAATCTGGGGTTGAT 59.393 38.462 21.60 2.43 44.82 2.57
2707 4032 2.509548 TGTAACCAAGGCAGCTATCCAT 59.490 45.455 6.92 0.00 0.00 3.41
2937 4262 3.721087 AAGTAGTCCCCCTTGTTGATG 57.279 47.619 0.00 0.00 0.00 3.07
2949 4274 3.274288 CTTGGCTCCATCAAAGTAGTCC 58.726 50.000 0.00 0.00 0.00 3.85
3102 4427 2.602456 CCTATAGCATATAGGCGTCGCG 60.602 54.545 11.75 0.00 39.27 5.87
3103 4428 2.358267 ACCTATAGCATATAGGCGTCGC 59.642 50.000 18.63 9.22 43.80 5.19
3104 4429 4.335874 AGAACCTATAGCATATAGGCGTCG 59.664 45.833 18.63 0.00 43.80 5.12
3286 4612 9.725019 TCTTTGCGGAGAATATATAATGATGTT 57.275 29.630 0.00 0.00 0.00 2.71
3531 4872 5.366482 TTTATTGCTATGTAGGTGAGCCA 57.634 39.130 0.00 0.00 35.24 4.75
3565 4906 2.027003 TTCGATACGGGCCGAAAATT 57.973 45.000 35.78 12.77 41.13 1.82
3587 4934 3.181506 GCAGAAGAAAATTAGGACTGCCG 60.182 47.826 0.00 0.00 41.88 5.69
3588 4935 3.758554 TGCAGAAGAAAATTAGGACTGCC 59.241 43.478 0.00 0.00 45.39 4.85
3589 4936 5.573337 ATGCAGAAGAAAATTAGGACTGC 57.427 39.130 0.00 0.00 45.92 4.40
3590 4937 8.273780 AGTTATGCAGAAGAAAATTAGGACTG 57.726 34.615 0.00 0.00 0.00 3.51
3591 4938 8.870075 AAGTTATGCAGAAGAAAATTAGGACT 57.130 30.769 0.00 0.00 0.00 3.85
3592 4939 9.914131 AAAAGTTATGCAGAAGAAAATTAGGAC 57.086 29.630 0.00 0.00 0.00 3.85
3753 5998 4.047166 TGGACCATCATTCTTGACCCTAT 58.953 43.478 0.00 0.00 33.85 2.57
3756 6001 2.806945 TGGACCATCATTCTTGACCC 57.193 50.000 0.00 0.00 33.85 4.46
3780 6025 8.885722 CAAGTACAAAACAAGGTTAGAACTGTA 58.114 33.333 0.00 0.00 0.00 2.74
3782 6027 6.691388 GCAAGTACAAAACAAGGTTAGAACTG 59.309 38.462 0.00 0.00 0.00 3.16
3784 6029 6.792326 AGCAAGTACAAAACAAGGTTAGAAC 58.208 36.000 0.00 0.00 0.00 3.01
3785 6030 7.254852 CAAGCAAGTACAAAACAAGGTTAGAA 58.745 34.615 0.00 0.00 0.00 2.10
3786 6031 6.679392 GCAAGCAAGTACAAAACAAGGTTAGA 60.679 38.462 0.00 0.00 0.00 2.10
3787 6032 5.458779 GCAAGCAAGTACAAAACAAGGTTAG 59.541 40.000 0.00 0.00 0.00 2.34
3789 6034 4.081697 AGCAAGCAAGTACAAAACAAGGTT 60.082 37.500 0.00 0.00 0.00 3.50
3790 6035 3.447229 AGCAAGCAAGTACAAAACAAGGT 59.553 39.130 0.00 0.00 0.00 3.50
3791 6036 3.798337 CAGCAAGCAAGTACAAAACAAGG 59.202 43.478 0.00 0.00 0.00 3.61
3792 6037 3.243643 GCAGCAAGCAAGTACAAAACAAG 59.756 43.478 0.00 0.00 44.79 3.16
3846 6135 6.571520 CGCTGACTTCGAAATTAATAGCAATC 59.428 38.462 0.00 0.00 0.00 2.67
4066 6396 9.582648 AAGTAGAATTCTCTCTTCTAGTATCCC 57.417 37.037 12.24 0.00 37.71 3.85
4134 6464 6.891388 TGTGGACTTCTTGTAAACTTAAGGA 58.109 36.000 7.53 0.00 0.00 3.36
4156 6486 2.683211 AAAGTTGAGGGGCAAGATGT 57.317 45.000 0.00 0.00 37.12 3.06
4190 6520 8.802267 CCTTTTGTTTTGAAATATGAGGGACTA 58.198 33.333 0.00 0.00 41.55 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.