Multiple sequence alignment - TraesCS2A01G003000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G003000 | chr2A | 100.000 | 3501 | 0 | 0 | 758 | 4258 | 1860723 | 1857223 | 0.000000e+00 | 6466.0 |
1 | TraesCS2A01G003000 | chr2A | 100.000 | 507 | 0 | 0 | 1 | 507 | 1861480 | 1860974 | 0.000000e+00 | 937.0 |
2 | TraesCS2A01G003000 | chr2A | 75.751 | 466 | 93 | 6 | 1819 | 2280 | 12313906 | 12314355 | 2.580000e-52 | 217.0 |
3 | TraesCS2A01G003000 | chr2D | 93.269 | 3209 | 141 | 29 | 842 | 4009 | 1961474 | 1958300 | 0.000000e+00 | 4660.0 |
4 | TraesCS2A01G003000 | chr2D | 100.000 | 29 | 0 | 0 | 3991 | 4019 | 1958963 | 1958935 | 2.000000e-03 | 54.7 |
5 | TraesCS2A01G003000 | chr2B | 92.809 | 2962 | 172 | 18 | 842 | 3781 | 19741 | 22683 | 0.000000e+00 | 4252.0 |
6 | TraesCS2A01G003000 | chr2B | 93.153 | 1738 | 81 | 16 | 2555 | 4258 | 448926 | 447193 | 0.000000e+00 | 2516.0 |
7 | TraesCS2A01G003000 | chr2B | 92.259 | 1731 | 112 | 14 | 842 | 2555 | 451278 | 449553 | 0.000000e+00 | 2435.0 |
8 | TraesCS2A01G003000 | chr2B | 89.399 | 1547 | 149 | 11 | 1656 | 3191 | 119882 | 118340 | 0.000000e+00 | 1934.0 |
9 | TraesCS2A01G003000 | chr2B | 90.996 | 833 | 60 | 6 | 842 | 1664 | 121367 | 120540 | 0.000000e+00 | 1109.0 |
10 | TraesCS2A01G003000 | chr2B | 95.000 | 320 | 16 | 0 | 3703 | 4022 | 112657 | 112338 | 1.770000e-138 | 503.0 |
11 | TraesCS2A01G003000 | chr2B | 90.419 | 334 | 13 | 2 | 3944 | 4258 | 40286 | 40619 | 5.090000e-114 | 422.0 |
12 | TraesCS2A01G003000 | chr2B | 97.642 | 212 | 5 | 0 | 3810 | 4021 | 22683 | 22894 | 8.700000e-97 | 364.0 |
13 | TraesCS2A01G003000 | chr2B | 93.365 | 211 | 12 | 2 | 3491 | 3700 | 113749 | 113540 | 1.150000e-80 | 311.0 |
14 | TraesCS2A01G003000 | chr2B | 76.267 | 434 | 96 | 5 | 1027 | 1455 | 448891 | 448460 | 1.540000e-54 | 224.0 |
15 | TraesCS2A01G003000 | chr2B | 95.798 | 119 | 5 | 0 | 3340 | 3458 | 113864 | 113746 | 4.340000e-45 | 193.0 |
16 | TraesCS2A01G003000 | chr2B | 94.595 | 37 | 2 | 0 | 3848 | 3884 | 447671 | 447635 | 1.650000e-04 | 58.4 |
17 | TraesCS2A01G003000 | chr7D | 72.370 | 1274 | 297 | 48 | 1029 | 2280 | 481647 | 480407 | 6.770000e-93 | 351.0 |
18 | TraesCS2A01G003000 | chr7D | 74.409 | 465 | 106 | 10 | 2585 | 3042 | 982265 | 981807 | 2.020000e-43 | 187.0 |
19 | TraesCS2A01G003000 | chr7D | 72.623 | 610 | 129 | 26 | 1029 | 1622 | 982259 | 981672 | 2.630000e-37 | 167.0 |
20 | TraesCS2A01G003000 | chr7D | 73.756 | 442 | 91 | 20 | 1046 | 1473 | 608809855 | 608809425 | 2.650000e-32 | 150.0 |
21 | TraesCS2A01G003000 | chr7D | 74.531 | 373 | 69 | 14 | 2672 | 3042 | 915660 | 915312 | 5.740000e-29 | 139.0 |
22 | TraesCS2A01G003000 | chr7D | 73.378 | 447 | 88 | 22 | 1045 | 1474 | 480838 | 480406 | 2.060000e-28 | 137.0 |
23 | TraesCS2A01G003000 | chr7D | 100.000 | 31 | 0 | 0 | 951 | 981 | 983426 | 983396 | 1.650000e-04 | 58.4 |
24 | TraesCS2A01G003000 | chr7B | 71.251 | 1287 | 291 | 61 | 1029 | 2280 | 697080072 | 697081314 | 1.970000e-63 | 254.0 |
25 | TraesCS2A01G003000 | chr7B | 73.407 | 455 | 110 | 10 | 1029 | 1474 | 693923453 | 693923905 | 4.410000e-35 | 159.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2A01G003000 | chr2A | 1857223 | 1861480 | 4257 | True | 3701.500000 | 6466 | 100.0000 | 1 | 4258 | 2 | chr2A.!!$R1 | 4257 |
1 | TraesCS2A01G003000 | chr2D | 1958300 | 1961474 | 3174 | True | 2357.350000 | 4660 | 96.6345 | 842 | 4019 | 2 | chr2D.!!$R1 | 3177 |
2 | TraesCS2A01G003000 | chr2B | 19741 | 22894 | 3153 | False | 2308.000000 | 4252 | 95.2255 | 842 | 4021 | 2 | chr2B.!!$F2 | 3179 |
3 | TraesCS2A01G003000 | chr2B | 118340 | 121367 | 3027 | True | 1521.500000 | 1934 | 90.1975 | 842 | 3191 | 2 | chr2B.!!$R2 | 2349 |
4 | TraesCS2A01G003000 | chr2B | 447193 | 451278 | 4085 | True | 1308.350000 | 2516 | 89.0685 | 842 | 4258 | 4 | chr2B.!!$R3 | 3416 |
5 | TraesCS2A01G003000 | chr2B | 112338 | 113864 | 1526 | True | 335.666667 | 503 | 94.7210 | 3340 | 4022 | 3 | chr2B.!!$R1 | 682 |
6 | TraesCS2A01G003000 | chr7D | 480406 | 481647 | 1241 | True | 244.000000 | 351 | 72.8740 | 1029 | 2280 | 2 | chr7D.!!$R3 | 1251 |
7 | TraesCS2A01G003000 | chr7B | 697080072 | 697081314 | 1242 | False | 254.000000 | 254 | 71.2510 | 1029 | 2280 | 1 | chr7B.!!$F2 | 1251 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
167 | 168 | 0.179108 | GCGCGTTCACTCTTAGGGAT | 60.179 | 55.0 | 8.43 | 0.0 | 0.00 | 3.85 | F |
1083 | 1092 | 0.105778 | TTGACTGCACCACATCGACA | 59.894 | 50.0 | 0.00 | 0.0 | 0.00 | 4.35 | F |
1143 | 1155 | 0.326264 | AAGAGAAGCTCACCCGCATT | 59.674 | 50.0 | 0.00 | 0.0 | 32.06 | 3.56 | F |
2949 | 4274 | 0.032813 | ATGGGCTCATCAACAAGGGG | 60.033 | 55.0 | 0.00 | 0.0 | 0.00 | 4.79 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1380 | 1395 | 0.038159 | CTCCGTCAAAGAAGTCGCCT | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 | R |
1887 | 2580 | 2.122056 | ACCTTGTCCCTAGCCGGT | 59.878 | 61.111 | 1.90 | 0.00 | 0.00 | 5.28 | R |
3103 | 4428 | 2.358267 | ACCTATAGCATATAGGCGTCGC | 59.642 | 50.000 | 18.63 | 9.22 | 43.80 | 5.19 | R |
4156 | 6486 | 2.683211 | AAAGTTGAGGGGCAAGATGT | 57.317 | 45.000 | 0.00 | 0.00 | 37.12 | 3.06 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 4.916983 | AAGCATTTGTGTGTAGCAAGAA | 57.083 | 36.364 | 0.00 | 0.00 | 0.00 | 2.52 |
22 | 23 | 4.916983 | AGCATTTGTGTGTAGCAAGAAA | 57.083 | 36.364 | 0.00 | 0.00 | 0.00 | 2.52 |
23 | 24 | 5.458041 | AGCATTTGTGTGTAGCAAGAAAT | 57.542 | 34.783 | 0.00 | 0.00 | 0.00 | 2.17 |
24 | 25 | 5.224888 | AGCATTTGTGTGTAGCAAGAAATG | 58.775 | 37.500 | 0.00 | 0.00 | 39.63 | 2.32 |
25 | 26 | 4.386652 | GCATTTGTGTGTAGCAAGAAATGG | 59.613 | 41.667 | 0.00 | 0.00 | 38.43 | 3.16 |
26 | 27 | 5.771469 | CATTTGTGTGTAGCAAGAAATGGA | 58.229 | 37.500 | 0.00 | 0.00 | 36.51 | 3.41 |
27 | 28 | 6.392354 | CATTTGTGTGTAGCAAGAAATGGAT | 58.608 | 36.000 | 0.00 | 0.00 | 36.51 | 3.41 |
28 | 29 | 6.403866 | TTTGTGTGTAGCAAGAAATGGATT | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
29 | 30 | 6.403866 | TTGTGTGTAGCAAGAAATGGATTT | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
30 | 31 | 6.403866 | TGTGTGTAGCAAGAAATGGATTTT | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
31 | 32 | 6.446318 | TGTGTGTAGCAAGAAATGGATTTTC | 58.554 | 36.000 | 0.00 | 0.00 | 43.45 | 2.29 |
32 | 33 | 5.863935 | GTGTGTAGCAAGAAATGGATTTTCC | 59.136 | 40.000 | 0.00 | 0.00 | 44.06 | 3.13 |
33 | 34 | 5.774690 | TGTGTAGCAAGAAATGGATTTTCCT | 59.225 | 36.000 | 0.00 | 0.00 | 44.06 | 3.36 |
34 | 35 | 6.095377 | GTGTAGCAAGAAATGGATTTTCCTG | 58.905 | 40.000 | 0.00 | 0.00 | 44.06 | 3.86 |
35 | 36 | 6.009589 | TGTAGCAAGAAATGGATTTTCCTGA | 58.990 | 36.000 | 1.84 | 0.00 | 44.06 | 3.86 |
36 | 37 | 6.664816 | TGTAGCAAGAAATGGATTTTCCTGAT | 59.335 | 34.615 | 1.84 | 0.00 | 44.06 | 2.90 |
37 | 38 | 6.616237 | AGCAAGAAATGGATTTTCCTGATT | 57.384 | 33.333 | 1.84 | 0.00 | 44.06 | 2.57 |
38 | 39 | 6.403878 | AGCAAGAAATGGATTTTCCTGATTG | 58.596 | 36.000 | 1.84 | 0.00 | 44.06 | 2.67 |
39 | 40 | 5.064325 | GCAAGAAATGGATTTTCCTGATTGC | 59.936 | 40.000 | 6.87 | 6.87 | 44.06 | 3.56 |
40 | 41 | 6.403878 | CAAGAAATGGATTTTCCTGATTGCT | 58.596 | 36.000 | 0.00 | 0.00 | 44.06 | 3.91 |
41 | 42 | 7.549839 | CAAGAAATGGATTTTCCTGATTGCTA | 58.450 | 34.615 | 0.00 | 0.00 | 44.06 | 3.49 |
42 | 43 | 7.105241 | AGAAATGGATTTTCCTGATTGCTAC | 57.895 | 36.000 | 0.00 | 0.00 | 44.06 | 3.58 |
43 | 44 | 6.664816 | AGAAATGGATTTTCCTGATTGCTACA | 59.335 | 34.615 | 0.00 | 0.00 | 44.06 | 2.74 |
44 | 45 | 7.343833 | AGAAATGGATTTTCCTGATTGCTACAT | 59.656 | 33.333 | 0.00 | 0.00 | 44.06 | 2.29 |
45 | 46 | 5.840243 | TGGATTTTCCTGATTGCTACATG | 57.160 | 39.130 | 0.00 | 0.00 | 37.46 | 3.21 |
46 | 47 | 5.508567 | TGGATTTTCCTGATTGCTACATGA | 58.491 | 37.500 | 0.00 | 0.00 | 37.46 | 3.07 |
47 | 48 | 5.951148 | TGGATTTTCCTGATTGCTACATGAA | 59.049 | 36.000 | 0.00 | 0.00 | 37.46 | 2.57 |
48 | 49 | 6.436847 | TGGATTTTCCTGATTGCTACATGAAA | 59.563 | 34.615 | 0.00 | 0.00 | 37.46 | 2.69 |
49 | 50 | 7.039152 | TGGATTTTCCTGATTGCTACATGAAAA | 60.039 | 33.333 | 0.00 | 16.19 | 41.76 | 2.29 |
50 | 51 | 7.983484 | GGATTTTCCTGATTGCTACATGAAAAT | 59.017 | 33.333 | 20.73 | 20.73 | 45.46 | 1.82 |
56 | 57 | 8.773645 | TCCTGATTGCTACATGAAAATAATACG | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
57 | 58 | 7.535258 | CCTGATTGCTACATGAAAATAATACGC | 59.465 | 37.037 | 0.00 | 0.00 | 0.00 | 4.42 |
58 | 59 | 8.153479 | TGATTGCTACATGAAAATAATACGCT | 57.847 | 30.769 | 0.00 | 0.00 | 0.00 | 5.07 |
59 | 60 | 9.267084 | TGATTGCTACATGAAAATAATACGCTA | 57.733 | 29.630 | 0.00 | 0.00 | 0.00 | 4.26 |
60 | 61 | 9.530129 | GATTGCTACATGAAAATAATACGCTAC | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
61 | 62 | 8.657074 | TTGCTACATGAAAATAATACGCTACT | 57.343 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
62 | 63 | 8.657074 | TGCTACATGAAAATAATACGCTACTT | 57.343 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
63 | 64 | 8.547894 | TGCTACATGAAAATAATACGCTACTTG | 58.452 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
64 | 65 | 8.548721 | GCTACATGAAAATAATACGCTACTTGT | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
73 | 74 | 8.991243 | AATAATACGCTACTTGTTTAGTGTGA | 57.009 | 30.769 | 6.61 | 0.00 | 41.77 | 3.58 |
74 | 75 | 8.991243 | ATAATACGCTACTTGTTTAGTGTGAA | 57.009 | 30.769 | 6.61 | 0.00 | 41.77 | 3.18 |
75 | 76 | 7.900782 | AATACGCTACTTGTTTAGTGTGAAT | 57.099 | 32.000 | 6.61 | 0.00 | 41.77 | 2.57 |
76 | 77 | 5.591643 | ACGCTACTTGTTTAGTGTGAATG | 57.408 | 39.130 | 0.00 | 0.00 | 40.53 | 2.67 |
77 | 78 | 5.294356 | ACGCTACTTGTTTAGTGTGAATGA | 58.706 | 37.500 | 0.00 | 0.00 | 40.53 | 2.57 |
78 | 79 | 5.176958 | ACGCTACTTGTTTAGTGTGAATGAC | 59.823 | 40.000 | 0.00 | 0.00 | 40.53 | 3.06 |
79 | 80 | 5.176774 | CGCTACTTGTTTAGTGTGAATGACA | 59.823 | 40.000 | 0.00 | 0.00 | 37.73 | 3.58 |
80 | 81 | 6.292649 | CGCTACTTGTTTAGTGTGAATGACAA | 60.293 | 38.462 | 0.00 | 0.00 | 37.73 | 3.18 |
81 | 82 | 7.571244 | CGCTACTTGTTTAGTGTGAATGACAAT | 60.571 | 37.037 | 0.00 | 0.00 | 37.73 | 2.71 |
82 | 83 | 7.746475 | GCTACTTGTTTAGTGTGAATGACAATC | 59.254 | 37.037 | 0.00 | 0.00 | 37.73 | 2.67 |
83 | 84 | 7.566760 | ACTTGTTTAGTGTGAATGACAATCA | 57.433 | 32.000 | 0.00 | 0.00 | 35.91 | 2.57 |
84 | 85 | 7.995289 | ACTTGTTTAGTGTGAATGACAATCAA | 58.005 | 30.769 | 0.00 | 0.00 | 35.91 | 2.57 |
85 | 86 | 8.632679 | ACTTGTTTAGTGTGAATGACAATCAAT | 58.367 | 29.630 | 0.00 | 0.00 | 35.91 | 2.57 |
98 | 99 | 9.829507 | GAATGACAATCAATATATCCTAGAGGG | 57.170 | 37.037 | 0.00 | 0.00 | 35.41 | 4.30 |
99 | 100 | 7.187824 | TGACAATCAATATATCCTAGAGGGC | 57.812 | 40.000 | 0.00 | 0.00 | 35.41 | 5.19 |
100 | 101 | 6.962311 | TGACAATCAATATATCCTAGAGGGCT | 59.038 | 38.462 | 0.00 | 0.00 | 35.41 | 5.19 |
101 | 102 | 7.124901 | TGACAATCAATATATCCTAGAGGGCTC | 59.875 | 40.741 | 0.00 | 0.00 | 35.41 | 4.70 |
102 | 103 | 6.962311 | ACAATCAATATATCCTAGAGGGCTCA | 59.038 | 38.462 | 0.00 | 0.00 | 35.41 | 4.26 |
103 | 104 | 7.125507 | ACAATCAATATATCCTAGAGGGCTCAG | 59.874 | 40.741 | 0.00 | 0.00 | 35.41 | 3.35 |
104 | 105 | 4.959210 | TCAATATATCCTAGAGGGCTCAGC | 59.041 | 45.833 | 0.00 | 0.00 | 35.41 | 4.26 |
105 | 106 | 4.898014 | ATATATCCTAGAGGGCTCAGCT | 57.102 | 45.455 | 0.00 | 0.00 | 35.41 | 4.24 |
106 | 107 | 2.595750 | TATCCTAGAGGGCTCAGCTC | 57.404 | 55.000 | 0.00 | 0.00 | 35.41 | 4.09 |
107 | 108 | 0.560193 | ATCCTAGAGGGCTCAGCTCA | 59.440 | 55.000 | 0.00 | 0.00 | 35.41 | 4.26 |
108 | 109 | 0.560193 | TCCTAGAGGGCTCAGCTCAT | 59.440 | 55.000 | 0.00 | 0.00 | 35.41 | 2.90 |
109 | 110 | 1.062581 | TCCTAGAGGGCTCAGCTCATT | 60.063 | 52.381 | 0.00 | 0.00 | 35.41 | 2.57 |
110 | 111 | 2.177888 | TCCTAGAGGGCTCAGCTCATTA | 59.822 | 50.000 | 0.00 | 0.00 | 35.41 | 1.90 |
111 | 112 | 3.172339 | CCTAGAGGGCTCAGCTCATTAT | 58.828 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
112 | 113 | 3.055963 | CCTAGAGGGCTCAGCTCATTATG | 60.056 | 52.174 | 0.00 | 0.00 | 0.00 | 1.90 |
113 | 114 | 2.406559 | AGAGGGCTCAGCTCATTATGT | 58.593 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
114 | 115 | 3.581101 | AGAGGGCTCAGCTCATTATGTA | 58.419 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
115 | 116 | 4.166539 | AGAGGGCTCAGCTCATTATGTAT | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
116 | 117 | 4.222588 | AGAGGGCTCAGCTCATTATGTATC | 59.777 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
117 | 118 | 4.166539 | AGGGCTCAGCTCATTATGTATCT | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
118 | 119 | 4.596643 | AGGGCTCAGCTCATTATGTATCTT | 59.403 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
119 | 120 | 5.072872 | AGGGCTCAGCTCATTATGTATCTTT | 59.927 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
120 | 121 | 5.180868 | GGGCTCAGCTCATTATGTATCTTTG | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 2.77 |
121 | 122 | 5.180868 | GGCTCAGCTCATTATGTATCTTTGG | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 3.28 |
122 | 123 | 5.762218 | GCTCAGCTCATTATGTATCTTTGGT | 59.238 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
123 | 124 | 6.073331 | GCTCAGCTCATTATGTATCTTTGGTC | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
124 | 125 | 7.129457 | TCAGCTCATTATGTATCTTTGGTCT | 57.871 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
125 | 126 | 7.568349 | TCAGCTCATTATGTATCTTTGGTCTT | 58.432 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
126 | 127 | 8.704668 | TCAGCTCATTATGTATCTTTGGTCTTA | 58.295 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
127 | 128 | 9.499479 | CAGCTCATTATGTATCTTTGGTCTTAT | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
137 | 138 | 9.434275 | TGTATCTTTGGTCTTATAAGGATCTCA | 57.566 | 33.333 | 12.54 | 6.71 | 0.00 | 3.27 |
138 | 139 | 9.921637 | GTATCTTTGGTCTTATAAGGATCTCAG | 57.078 | 37.037 | 12.54 | 3.13 | 0.00 | 3.35 |
139 | 140 | 8.789767 | ATCTTTGGTCTTATAAGGATCTCAGA | 57.210 | 34.615 | 12.54 | 7.83 | 0.00 | 3.27 |
140 | 141 | 8.789767 | TCTTTGGTCTTATAAGGATCTCAGAT | 57.210 | 34.615 | 12.54 | 0.00 | 0.00 | 2.90 |
141 | 142 | 8.646004 | TCTTTGGTCTTATAAGGATCTCAGATG | 58.354 | 37.037 | 12.54 | 0.00 | 0.00 | 2.90 |
142 | 143 | 6.924913 | TGGTCTTATAAGGATCTCAGATGG | 57.075 | 41.667 | 12.54 | 0.00 | 0.00 | 3.51 |
143 | 144 | 6.385443 | TGGTCTTATAAGGATCTCAGATGGT | 58.615 | 40.000 | 12.54 | 0.00 | 0.00 | 3.55 |
144 | 145 | 6.268617 | TGGTCTTATAAGGATCTCAGATGGTG | 59.731 | 42.308 | 12.54 | 0.00 | 0.00 | 4.17 |
145 | 146 | 6.295575 | GGTCTTATAAGGATCTCAGATGGTGG | 60.296 | 46.154 | 12.54 | 0.00 | 0.00 | 4.61 |
146 | 147 | 5.247110 | TCTTATAAGGATCTCAGATGGTGGC | 59.753 | 44.000 | 12.54 | 0.00 | 0.00 | 5.01 |
147 | 148 | 0.467384 | AAGGATCTCAGATGGTGGCG | 59.533 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
148 | 149 | 1.070445 | GGATCTCAGATGGTGGCGG | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
149 | 150 | 1.596477 | GATCTCAGATGGTGGCGGC | 60.596 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
150 | 151 | 3.451556 | ATCTCAGATGGTGGCGGCG | 62.452 | 63.158 | 0.51 | 0.51 | 0.00 | 6.46 |
162 | 163 | 2.807895 | GCGGCGCGTTCACTCTTA | 60.808 | 61.111 | 19.09 | 0.00 | 0.00 | 2.10 |
163 | 164 | 2.789203 | GCGGCGCGTTCACTCTTAG | 61.789 | 63.158 | 19.09 | 0.00 | 0.00 | 2.18 |
164 | 165 | 2.158959 | CGGCGCGTTCACTCTTAGG | 61.159 | 63.158 | 8.43 | 0.00 | 0.00 | 2.69 |
165 | 166 | 1.810030 | GGCGCGTTCACTCTTAGGG | 60.810 | 63.158 | 8.43 | 0.00 | 0.00 | 3.53 |
166 | 167 | 1.214589 | GCGCGTTCACTCTTAGGGA | 59.785 | 57.895 | 8.43 | 0.00 | 0.00 | 4.20 |
167 | 168 | 0.179108 | GCGCGTTCACTCTTAGGGAT | 60.179 | 55.000 | 8.43 | 0.00 | 0.00 | 3.85 |
168 | 169 | 1.739371 | GCGCGTTCACTCTTAGGGATT | 60.739 | 52.381 | 8.43 | 0.00 | 0.00 | 3.01 |
169 | 170 | 2.480759 | GCGCGTTCACTCTTAGGGATTA | 60.481 | 50.000 | 8.43 | 0.00 | 0.00 | 1.75 |
170 | 171 | 3.114065 | CGCGTTCACTCTTAGGGATTAC | 58.886 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
171 | 172 | 3.455327 | GCGTTCACTCTTAGGGATTACC | 58.545 | 50.000 | 0.00 | 0.00 | 40.67 | 2.85 |
187 | 188 | 7.933215 | GGGATTACCTCTTAAGTTGCTAAAA | 57.067 | 36.000 | 1.63 | 0.00 | 35.85 | 1.52 |
188 | 189 | 8.521170 | GGGATTACCTCTTAAGTTGCTAAAAT | 57.479 | 34.615 | 1.63 | 0.00 | 35.85 | 1.82 |
189 | 190 | 8.967918 | GGGATTACCTCTTAAGTTGCTAAAATT | 58.032 | 33.333 | 1.63 | 0.00 | 35.85 | 1.82 |
261 | 262 | 9.796120 | TTTTTATTCGCATAAAATTAGGGACTG | 57.204 | 29.630 | 12.65 | 0.00 | 42.11 | 3.51 |
262 | 263 | 4.893424 | TTCGCATAAAATTAGGGACTGC | 57.107 | 40.909 | 0.00 | 0.00 | 41.52 | 4.40 |
263 | 264 | 3.879998 | TCGCATAAAATTAGGGACTGCA | 58.120 | 40.909 | 0.00 | 0.00 | 41.52 | 4.41 |
264 | 265 | 4.265893 | TCGCATAAAATTAGGGACTGCAA | 58.734 | 39.130 | 0.00 | 0.00 | 41.52 | 4.08 |
265 | 266 | 4.887071 | TCGCATAAAATTAGGGACTGCAAT | 59.113 | 37.500 | 0.00 | 0.00 | 41.52 | 3.56 |
266 | 267 | 4.977963 | CGCATAAAATTAGGGACTGCAATG | 59.022 | 41.667 | 0.00 | 0.00 | 41.52 | 2.82 |
267 | 268 | 5.221028 | CGCATAAAATTAGGGACTGCAATGA | 60.221 | 40.000 | 0.00 | 0.00 | 41.52 | 2.57 |
268 | 269 | 5.979517 | GCATAAAATTAGGGACTGCAATGAC | 59.020 | 40.000 | 0.00 | 0.00 | 41.52 | 3.06 |
269 | 270 | 6.405731 | GCATAAAATTAGGGACTGCAATGACA | 60.406 | 38.462 | 0.00 | 0.00 | 41.52 | 3.58 |
270 | 271 | 5.391312 | AAAATTAGGGACTGCAATGACAC | 57.609 | 39.130 | 0.00 | 0.00 | 41.52 | 3.67 |
271 | 272 | 3.719268 | ATTAGGGACTGCAATGACACA | 57.281 | 42.857 | 0.00 | 0.00 | 41.52 | 3.72 |
272 | 273 | 2.472695 | TAGGGACTGCAATGACACAC | 57.527 | 50.000 | 0.00 | 0.00 | 41.52 | 3.82 |
273 | 274 | 0.473755 | AGGGACTGCAATGACACACA | 59.526 | 50.000 | 0.00 | 0.00 | 37.18 | 3.72 |
274 | 275 | 0.593128 | GGGACTGCAATGACACACAC | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
275 | 276 | 1.308047 | GGACTGCAATGACACACACA | 58.692 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
276 | 277 | 1.675483 | GGACTGCAATGACACACACAA | 59.325 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
277 | 278 | 2.098934 | GGACTGCAATGACACACACAAA | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
278 | 279 | 3.428725 | GGACTGCAATGACACACACAAAA | 60.429 | 43.478 | 0.00 | 0.00 | 0.00 | 2.44 |
279 | 280 | 4.362279 | GACTGCAATGACACACACAAAAT | 58.638 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
280 | 281 | 4.757594 | ACTGCAATGACACACACAAAATT | 58.242 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
281 | 282 | 4.805192 | ACTGCAATGACACACACAAAATTC | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
282 | 283 | 4.752146 | TGCAATGACACACACAAAATTCA | 58.248 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
283 | 284 | 5.358090 | TGCAATGACACACACAAAATTCAT | 58.642 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
284 | 285 | 5.234543 | TGCAATGACACACACAAAATTCATG | 59.765 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
285 | 286 | 5.672051 | CAATGACACACACAAAATTCATGC | 58.328 | 37.500 | 0.00 | 0.00 | 0.00 | 4.06 |
286 | 287 | 4.382345 | TGACACACACAAAATTCATGCA | 57.618 | 36.364 | 0.00 | 0.00 | 0.00 | 3.96 |
287 | 288 | 4.752146 | TGACACACACAAAATTCATGCAA | 58.248 | 34.783 | 0.00 | 0.00 | 0.00 | 4.08 |
288 | 289 | 4.804665 | TGACACACACAAAATTCATGCAAG | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 4.01 |
289 | 290 | 5.008619 | ACACACACAAAATTCATGCAAGA | 57.991 | 34.783 | 0.00 | 0.00 | 0.00 | 3.02 |
290 | 291 | 5.045215 | ACACACACAAAATTCATGCAAGAG | 58.955 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
291 | 292 | 4.053295 | ACACACAAAATTCATGCAAGAGC | 58.947 | 39.130 | 0.00 | 0.00 | 42.57 | 4.09 |
310 | 311 | 9.573133 | GCAAGAGCATACATTTAAAACATAGTT | 57.427 | 29.630 | 0.00 | 0.00 | 41.58 | 2.24 |
314 | 315 | 9.937175 | GAGCATACATTTAAAACATAGTTCTCC | 57.063 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
315 | 316 | 8.903820 | AGCATACATTTAAAACATAGTTCTCCC | 58.096 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
316 | 317 | 8.903820 | GCATACATTTAAAACATAGTTCTCCCT | 58.096 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
319 | 320 | 8.934023 | ACATTTAAAACATAGTTCTCCCTCAA | 57.066 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
320 | 321 | 9.533831 | ACATTTAAAACATAGTTCTCCCTCAAT | 57.466 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
323 | 324 | 9.457436 | TTTAAAACATAGTTCTCCCTCAATACC | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
324 | 325 | 6.893020 | AAACATAGTTCTCCCTCAATACCT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
325 | 326 | 6.893020 | AACATAGTTCTCCCTCAATACCTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
326 | 327 | 6.893020 | ACATAGTTCTCCCTCAATACCTTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
327 | 328 | 7.272144 | ACATAGTTCTCCCTCAATACCTTTT | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 2.27 |
328 | 329 | 7.699878 | ACATAGTTCTCCCTCAATACCTTTTT | 58.300 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
376 | 377 | 9.559732 | TCAAAAGTCAAACATCTCTATCTTTGA | 57.440 | 29.630 | 0.00 | 0.00 | 30.41 | 2.69 |
377 | 378 | 9.604626 | CAAAAGTCAAACATCTCTATCTTTGAC | 57.395 | 33.333 | 12.19 | 12.19 | 44.70 | 3.18 |
378 | 379 | 7.913674 | AAGTCAAACATCTCTATCTTTGACC | 57.086 | 36.000 | 15.18 | 2.61 | 45.11 | 4.02 |
379 | 380 | 7.009179 | AGTCAAACATCTCTATCTTTGACCA | 57.991 | 36.000 | 15.18 | 0.00 | 45.11 | 4.02 |
380 | 381 | 7.453393 | AGTCAAACATCTCTATCTTTGACCAA | 58.547 | 34.615 | 15.18 | 0.00 | 45.11 | 3.67 |
381 | 382 | 7.605691 | AGTCAAACATCTCTATCTTTGACCAAG | 59.394 | 37.037 | 15.18 | 0.00 | 45.11 | 3.61 |
382 | 383 | 7.389053 | GTCAAACATCTCTATCTTTGACCAAGT | 59.611 | 37.037 | 9.86 | 0.00 | 41.46 | 3.16 |
383 | 384 | 7.939039 | TCAAACATCTCTATCTTTGACCAAGTT | 59.061 | 33.333 | 0.00 | 0.00 | 28.61 | 2.66 |
384 | 385 | 8.571336 | CAAACATCTCTATCTTTGACCAAGTTT | 58.429 | 33.333 | 0.00 | 0.00 | 33.66 | 2.66 |
385 | 386 | 7.678947 | ACATCTCTATCTTTGACCAAGTTTG | 57.321 | 36.000 | 0.00 | 0.00 | 33.66 | 2.93 |
386 | 387 | 7.227156 | ACATCTCTATCTTTGACCAAGTTTGT | 58.773 | 34.615 | 0.00 | 0.00 | 33.66 | 2.83 |
387 | 388 | 7.721399 | ACATCTCTATCTTTGACCAAGTTTGTT | 59.279 | 33.333 | 0.00 | 0.00 | 33.66 | 2.83 |
388 | 389 | 7.496529 | TCTCTATCTTTGACCAAGTTTGTTG | 57.503 | 36.000 | 0.00 | 0.00 | 33.66 | 3.33 |
389 | 390 | 6.486657 | TCTCTATCTTTGACCAAGTTTGTTGG | 59.513 | 38.462 | 2.13 | 2.13 | 44.91 | 3.77 |
390 | 391 | 6.361433 | TCTATCTTTGACCAAGTTTGTTGGA | 58.639 | 36.000 | 10.75 | 0.00 | 42.06 | 3.53 |
391 | 392 | 5.930837 | ATCTTTGACCAAGTTTGTTGGAA | 57.069 | 34.783 | 10.75 | 0.00 | 42.06 | 3.53 |
392 | 393 | 5.730296 | TCTTTGACCAAGTTTGTTGGAAA | 57.270 | 34.783 | 10.75 | 2.35 | 42.06 | 3.13 |
393 | 394 | 5.719173 | TCTTTGACCAAGTTTGTTGGAAAG | 58.281 | 37.500 | 10.75 | 10.24 | 42.06 | 2.62 |
394 | 395 | 5.245075 | TCTTTGACCAAGTTTGTTGGAAAGT | 59.755 | 36.000 | 10.75 | 0.00 | 42.06 | 2.66 |
395 | 396 | 6.434652 | TCTTTGACCAAGTTTGTTGGAAAGTA | 59.565 | 34.615 | 10.75 | 0.48 | 42.06 | 2.24 |
396 | 397 | 6.783708 | TTGACCAAGTTTGTTGGAAAGTAT | 57.216 | 33.333 | 10.75 | 0.00 | 42.06 | 2.12 |
397 | 398 | 6.385649 | TGACCAAGTTTGTTGGAAAGTATC | 57.614 | 37.500 | 10.75 | 0.00 | 42.06 | 2.24 |
398 | 399 | 5.888724 | TGACCAAGTTTGTTGGAAAGTATCA | 59.111 | 36.000 | 10.75 | 0.28 | 42.06 | 2.15 |
399 | 400 | 6.378564 | TGACCAAGTTTGTTGGAAAGTATCAA | 59.621 | 34.615 | 10.75 | 0.00 | 42.06 | 2.57 |
400 | 401 | 6.569780 | ACCAAGTTTGTTGGAAAGTATCAAC | 58.430 | 36.000 | 10.75 | 0.00 | 42.06 | 3.18 |
408 | 409 | 7.667043 | TGTTGGAAAGTATCAACATCTACAC | 57.333 | 36.000 | 4.98 | 0.00 | 45.40 | 2.90 |
409 | 410 | 7.450074 | TGTTGGAAAGTATCAACATCTACACT | 58.550 | 34.615 | 4.98 | 0.00 | 45.40 | 3.55 |
410 | 411 | 8.590204 | TGTTGGAAAGTATCAACATCTACACTA | 58.410 | 33.333 | 4.98 | 0.00 | 45.40 | 2.74 |
411 | 412 | 9.601217 | GTTGGAAAGTATCAACATCTACACTAT | 57.399 | 33.333 | 0.00 | 0.00 | 41.85 | 2.12 |
412 | 413 | 9.817809 | TTGGAAAGTATCAACATCTACACTATC | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
413 | 414 | 8.977412 | TGGAAAGTATCAACATCTACACTATCA | 58.023 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
414 | 415 | 9.817809 | GGAAAGTATCAACATCTACACTATCAA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
488 | 489 | 9.515226 | AGTTTGCTATAAAGTTGGTCAAATAGA | 57.485 | 29.630 | 5.01 | 0.00 | 0.00 | 1.98 |
781 | 782 | 7.615582 | TTTACTCAGCAGTTCATTCATAAGG | 57.384 | 36.000 | 0.00 | 0.00 | 33.62 | 2.69 |
782 | 783 | 5.426689 | ACTCAGCAGTTCATTCATAAGGA | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
783 | 784 | 5.809001 | ACTCAGCAGTTCATTCATAAGGAA | 58.191 | 37.500 | 0.00 | 0.00 | 40.46 | 3.36 |
784 | 785 | 6.240894 | ACTCAGCAGTTCATTCATAAGGAAA | 58.759 | 36.000 | 0.00 | 0.00 | 39.39 | 3.13 |
785 | 786 | 6.150140 | ACTCAGCAGTTCATTCATAAGGAAAC | 59.850 | 38.462 | 0.00 | 0.00 | 39.39 | 2.78 |
787 | 788 | 7.394016 | TCAGCAGTTCATTCATAAGGAAACTA | 58.606 | 34.615 | 0.00 | 0.00 | 42.68 | 2.24 |
788 | 789 | 7.882791 | TCAGCAGTTCATTCATAAGGAAACTAA | 59.117 | 33.333 | 0.00 | 0.00 | 42.68 | 2.24 |
789 | 790 | 8.180267 | CAGCAGTTCATTCATAAGGAAACTAAG | 58.820 | 37.037 | 0.00 | 0.00 | 42.68 | 2.18 |
790 | 791 | 7.337942 | AGCAGTTCATTCATAAGGAAACTAAGG | 59.662 | 37.037 | 0.00 | 0.00 | 42.68 | 2.69 |
791 | 792 | 7.121315 | GCAGTTCATTCATAAGGAAACTAAGGT | 59.879 | 37.037 | 0.00 | 0.00 | 42.68 | 3.50 |
792 | 793 | 8.669243 | CAGTTCATTCATAAGGAAACTAAGGTC | 58.331 | 37.037 | 0.00 | 0.00 | 42.68 | 3.85 |
793 | 794 | 8.383175 | AGTTCATTCATAAGGAAACTAAGGTCA | 58.617 | 33.333 | 0.00 | 0.00 | 42.68 | 4.02 |
794 | 795 | 9.010029 | GTTCATTCATAAGGAAACTAAGGTCAA | 57.990 | 33.333 | 0.00 | 0.00 | 42.68 | 3.18 |
795 | 796 | 9.753674 | TTCATTCATAAGGAAACTAAGGTCAAT | 57.246 | 29.630 | 0.00 | 0.00 | 42.68 | 2.57 |
806 | 807 | 9.549078 | GGAAACTAAGGTCAATATAGAAAGAGG | 57.451 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
808 | 809 | 9.892130 | AAACTAAGGTCAATATAGAAAGAGGTG | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
809 | 810 | 8.024145 | ACTAAGGTCAATATAGAAAGAGGTGG | 57.976 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
810 | 811 | 6.893020 | AAGGTCAATATAGAAAGAGGTGGT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
811 | 812 | 6.893020 | AGGTCAATATAGAAAGAGGTGGTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
812 | 813 | 6.653989 | AGGTCAATATAGAAAGAGGTGGTTG | 58.346 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
813 | 814 | 6.215636 | AGGTCAATATAGAAAGAGGTGGTTGT | 59.784 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
814 | 815 | 6.316390 | GGTCAATATAGAAAGAGGTGGTTGTG | 59.684 | 42.308 | 0.00 | 0.00 | 0.00 | 3.33 |
815 | 816 | 7.103641 | GTCAATATAGAAAGAGGTGGTTGTGA | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.58 |
816 | 817 | 7.606456 | GTCAATATAGAAAGAGGTGGTTGTGAA | 59.394 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
817 | 818 | 8.328758 | TCAATATAGAAAGAGGTGGTTGTGAAT | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
818 | 819 | 9.613428 | CAATATAGAAAGAGGTGGTTGTGAATA | 57.387 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
822 | 823 | 9.838339 | ATAGAAAGAGGTGGTTGTGAATATAAG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
823 | 824 | 7.918076 | AGAAAGAGGTGGTTGTGAATATAAGA | 58.082 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
824 | 825 | 8.383175 | AGAAAGAGGTGGTTGTGAATATAAGAA | 58.617 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
825 | 826 | 7.923414 | AAGAGGTGGTTGTGAATATAAGAAC | 57.077 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
826 | 827 | 7.259088 | AGAGGTGGTTGTGAATATAAGAACT | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
827 | 828 | 7.690256 | AGAGGTGGTTGTGAATATAAGAACTT | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
828 | 829 | 7.607991 | AGAGGTGGTTGTGAATATAAGAACTTG | 59.392 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
829 | 830 | 7.231467 | AGGTGGTTGTGAATATAAGAACTTGT | 58.769 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
830 | 831 | 8.380099 | AGGTGGTTGTGAATATAAGAACTTGTA | 58.620 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
831 | 832 | 8.448615 | GGTGGTTGTGAATATAAGAACTTGTAC | 58.551 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
832 | 833 | 8.448615 | GTGGTTGTGAATATAAGAACTTGTACC | 58.551 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
833 | 834 | 8.380099 | TGGTTGTGAATATAAGAACTTGTACCT | 58.620 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
834 | 835 | 9.227777 | GGTTGTGAATATAAGAACTTGTACCTT | 57.772 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
837 | 838 | 9.653287 | TGTGAATATAAGAACTTGTACCTTCTG | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
838 | 839 | 9.654663 | GTGAATATAAGAACTTGTACCTTCTGT | 57.345 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
839 | 840 | 9.653287 | TGAATATAAGAACTTGTACCTTCTGTG | 57.347 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
840 | 841 | 8.494016 | AATATAAGAACTTGTACCTTCTGTGC | 57.506 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
865 | 866 | 6.465781 | CACTTACATTTTTATGTGCAGCTACG | 59.534 | 38.462 | 0.00 | 0.00 | 36.08 | 3.51 |
872 | 873 | 1.710013 | ATGTGCAGCTACGTACACAC | 58.290 | 50.000 | 16.23 | 10.82 | 45.04 | 3.82 |
921 | 922 | 2.225255 | GTCTGTGGCTCTCTTTTTGCTC | 59.775 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
935 | 936 | 5.710099 | TCTTTTTGCTCGATTTCCCTTACAT | 59.290 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
942 | 943 | 5.635700 | GCTCGATTTCCCTTACATATGAGTC | 59.364 | 44.000 | 10.38 | 0.00 | 0.00 | 3.36 |
984 | 993 | 4.943093 | ACATCTACACATGCATGCAGTTAA | 59.057 | 37.500 | 26.69 | 15.51 | 0.00 | 2.01 |
991 | 1000 | 3.707611 | ACATGCATGCAGTTAATTCCCAT | 59.292 | 39.130 | 26.69 | 0.84 | 0.00 | 4.00 |
1033 | 1042 | 1.192428 | GGATGGACGTACAGGGAAGT | 58.808 | 55.000 | 6.62 | 0.00 | 0.00 | 3.01 |
1083 | 1092 | 0.105778 | TTGACTGCACCACATCGACA | 59.894 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1143 | 1155 | 0.326264 | AAGAGAAGCTCACCCGCATT | 59.674 | 50.000 | 0.00 | 0.00 | 32.06 | 3.56 |
1380 | 1395 | 3.304911 | TCTGATGGGTTGGTCAACAAA | 57.695 | 42.857 | 14.69 | 3.71 | 41.58 | 2.83 |
1428 | 1444 | 2.047844 | CTCTCCAGTGTGCCCGTG | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
1479 | 1495 | 9.658799 | GCATATAACCATGTATGTATCTGACTT | 57.341 | 33.333 | 0.00 | 0.00 | 34.22 | 3.01 |
1504 | 1523 | 8.838649 | TGAGCTAAGCCAGTCCATATAATATA | 57.161 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
1697 | 2382 | 1.202639 | ACCACGATGCACAGTGAGAAA | 60.203 | 47.619 | 20.92 | 0.00 | 40.56 | 2.52 |
1725 | 2410 | 7.182760 | TCCTAGTCCCACTTCAGGTATATATG | 58.817 | 42.308 | 0.00 | 0.00 | 0.00 | 1.78 |
1731 | 2418 | 6.770785 | TCCCACTTCAGGTATATATGCAAAAC | 59.229 | 38.462 | 3.10 | 0.00 | 0.00 | 2.43 |
1747 | 2434 | 3.131046 | GCAAAACCATCCGATCCAATCTT | 59.869 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
1801 | 2493 | 8.506168 | TCCTAGGAAACAAACATATGATTGAC | 57.494 | 34.615 | 26.83 | 17.70 | 32.92 | 3.18 |
1887 | 2580 | 4.321156 | GCATTTGATTGCACTACCTTGACA | 60.321 | 41.667 | 0.00 | 0.00 | 42.31 | 3.58 |
1917 | 2610 | 2.550208 | GGACAAGGTGAATCGTGAGGTT | 60.550 | 50.000 | 0.00 | 0.00 | 36.94 | 3.50 |
1954 | 2647 | 6.279882 | CAAAAGAAGCTAACCCAATTTGTGA | 58.720 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2314 | 3010 | 9.605951 | ATTTACTCTAATCCAAATTATGCCCAT | 57.394 | 29.630 | 0.00 | 0.00 | 0.00 | 4.00 |
2416 | 3112 | 1.599797 | CACGTTTCACACCCTCCCC | 60.600 | 63.158 | 0.00 | 0.00 | 0.00 | 4.81 |
2534 | 3230 | 8.090831 | CCCGATCTGAATTCAAGAGTAATCATA | 58.909 | 37.037 | 9.88 | 0.00 | 0.00 | 2.15 |
2608 | 3933 | 0.178903 | AGGGAAGTGGCCACTAGACA | 60.179 | 55.000 | 37.89 | 0.00 | 41.58 | 3.41 |
2640 | 3965 | 4.454161 | GTGTATGCATTTGACAGTACCACA | 59.546 | 41.667 | 3.54 | 0.00 | 0.00 | 4.17 |
2707 | 4032 | 2.136298 | AGAGAAGCTCATCCGTCTCA | 57.864 | 50.000 | 12.23 | 0.00 | 41.07 | 3.27 |
2937 | 4262 | 1.068921 | GCTCTTCTCCGATGGGCTC | 59.931 | 63.158 | 0.00 | 0.00 | 31.63 | 4.70 |
2949 | 4274 | 0.032813 | ATGGGCTCATCAACAAGGGG | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3102 | 4427 | 7.545362 | AGTAATTACATCAACTCACTCATGC | 57.455 | 36.000 | 17.65 | 0.00 | 0.00 | 4.06 |
3103 | 4428 | 5.475273 | AATTACATCAACTCACTCATGCG | 57.525 | 39.130 | 0.00 | 0.00 | 0.00 | 4.73 |
3104 | 4429 | 1.081892 | ACATCAACTCACTCATGCGC | 58.918 | 50.000 | 0.00 | 0.00 | 0.00 | 6.09 |
3263 | 4589 | 2.099921 | CACGAGATCCACCTAGTCCAAG | 59.900 | 54.545 | 0.00 | 0.00 | 0.00 | 3.61 |
3270 | 4596 | 2.045885 | TCCACCTAGTCCAAGATTCCCT | 59.954 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
3284 | 4610 | 8.826765 | TCCAAGATTCCCTATTCAGGTAATATC | 58.173 | 37.037 | 0.00 | 0.00 | 40.79 | 1.63 |
3323 | 4658 | 7.778470 | ATTCTCCGCAAAGAAAATAGAGTAG | 57.222 | 36.000 | 2.22 | 0.00 | 38.69 | 2.57 |
3486 | 4827 | 2.133641 | GCCACCTTTGCCACCAAGT | 61.134 | 57.895 | 0.00 | 0.00 | 31.52 | 3.16 |
3531 | 4872 | 1.544246 | TCGAATCGTCACCACTCACAT | 59.456 | 47.619 | 1.52 | 0.00 | 0.00 | 3.21 |
3544 | 4885 | 2.093288 | CACTCACATGGCTCACCTACAT | 60.093 | 50.000 | 0.00 | 0.00 | 36.63 | 2.29 |
3587 | 4934 | 2.138596 | TTTCGGCCCGTATCGAATAC | 57.861 | 50.000 | 1.63 | 0.00 | 43.49 | 1.89 |
3598 | 4945 | 4.494350 | GTATCGAATACGGCAGTCCTAA | 57.506 | 45.455 | 0.00 | 0.00 | 40.21 | 2.69 |
3599 | 4946 | 5.056894 | GTATCGAATACGGCAGTCCTAAT | 57.943 | 43.478 | 0.00 | 0.00 | 40.21 | 1.73 |
3600 | 4947 | 4.602340 | ATCGAATACGGCAGTCCTAATT | 57.398 | 40.909 | 0.00 | 0.00 | 40.21 | 1.40 |
3601 | 4948 | 4.395959 | TCGAATACGGCAGTCCTAATTT | 57.604 | 40.909 | 0.00 | 0.00 | 40.21 | 1.82 |
3602 | 4949 | 4.761975 | TCGAATACGGCAGTCCTAATTTT | 58.238 | 39.130 | 0.00 | 0.00 | 40.21 | 1.82 |
3708 | 5953 | 9.768215 | TCTATCAAGTTTCCCCTTAATTTGAAT | 57.232 | 29.630 | 0.00 | 0.00 | 35.68 | 2.57 |
3753 | 5998 | 7.356089 | ACATACAGTTCTAATATTGGTCCGA | 57.644 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
3756 | 6001 | 9.574458 | CATACAGTTCTAATATTGGTCCGATAG | 57.426 | 37.037 | 5.06 | 0.00 | 0.00 | 2.08 |
3780 | 6025 | 5.380043 | GGTCAAGAATGATGGTCCATACAT | 58.620 | 41.667 | 3.72 | 7.56 | 38.01 | 2.29 |
3782 | 6027 | 6.428159 | GGTCAAGAATGATGGTCCATACATAC | 59.572 | 42.308 | 3.72 | 5.32 | 38.01 | 2.39 |
3784 | 6029 | 7.172190 | GTCAAGAATGATGGTCCATACATACAG | 59.828 | 40.741 | 3.72 | 3.10 | 38.01 | 2.74 |
3785 | 6030 | 6.753913 | AGAATGATGGTCCATACATACAGT | 57.246 | 37.500 | 3.72 | 0.00 | 0.00 | 3.55 |
3786 | 6031 | 7.141758 | AGAATGATGGTCCATACATACAGTT | 57.858 | 36.000 | 3.72 | 0.00 | 0.00 | 3.16 |
3787 | 6032 | 7.220030 | AGAATGATGGTCCATACATACAGTTC | 58.780 | 38.462 | 3.72 | 5.67 | 0.00 | 3.01 |
3789 | 6034 | 7.855784 | ATGATGGTCCATACATACAGTTCTA | 57.144 | 36.000 | 3.72 | 0.00 | 0.00 | 2.10 |
3790 | 6035 | 7.669089 | TGATGGTCCATACATACAGTTCTAA | 57.331 | 36.000 | 3.72 | 0.00 | 0.00 | 2.10 |
3791 | 6036 | 7.497595 | TGATGGTCCATACATACAGTTCTAAC | 58.502 | 38.462 | 3.72 | 0.00 | 0.00 | 2.34 |
3792 | 6037 | 6.229936 | TGGTCCATACATACAGTTCTAACC | 57.770 | 41.667 | 0.00 | 0.00 | 0.00 | 2.85 |
3837 | 6126 | 2.142319 | GCCGCAACCATGACAATTTTT | 58.858 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
3846 | 6135 | 7.115378 | GCAACCATGACAATTTTTACTTCTCAG | 59.885 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
4056 | 6386 | 1.135546 | ACACGCAGACGAGAGATCTTG | 60.136 | 52.381 | 0.00 | 0.00 | 43.93 | 3.02 |
4091 | 6421 | 7.881232 | CGGGATACTAGAAGAGAGAATTCTACT | 59.119 | 40.741 | 8.25 | 8.29 | 38.05 | 2.57 |
4156 | 6486 | 7.571025 | AGTTCCTTAAGTTTACAAGAAGTCCA | 58.429 | 34.615 | 0.97 | 0.00 | 0.00 | 4.02 |
4162 | 6492 | 8.974060 | TTAAGTTTACAAGAAGTCCACATCTT | 57.026 | 30.769 | 0.00 | 0.00 | 34.62 | 2.40 |
4206 | 6536 | 9.354673 | GGATGAATTTTAGTCCCTCATATTTCA | 57.645 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
4240 | 6570 | 7.495606 | AGGCATTTTGTGTAAAAAGAAAGAAGG | 59.504 | 33.333 | 0.00 | 0.00 | 39.09 | 3.46 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.916983 | TTCTTGCTACACACAAATGCTT | 57.083 | 36.364 | 0.00 | 0.00 | 0.00 | 3.91 |
1 | 2 | 4.916983 | TTTCTTGCTACACACAAATGCT | 57.083 | 36.364 | 0.00 | 0.00 | 0.00 | 3.79 |
2 | 3 | 4.386652 | CCATTTCTTGCTACACACAAATGC | 59.613 | 41.667 | 0.00 | 0.00 | 37.41 | 3.56 |
3 | 4 | 5.771469 | TCCATTTCTTGCTACACACAAATG | 58.229 | 37.500 | 0.00 | 0.00 | 37.96 | 2.32 |
4 | 5 | 6.594788 | ATCCATTTCTTGCTACACACAAAT | 57.405 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
5 | 6 | 6.403866 | AATCCATTTCTTGCTACACACAAA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
6 | 7 | 6.403866 | AAATCCATTTCTTGCTACACACAA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
7 | 8 | 6.403866 | AAAATCCATTTCTTGCTACACACA | 57.596 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
8 | 9 | 5.863935 | GGAAAATCCATTTCTTGCTACACAC | 59.136 | 40.000 | 1.47 | 0.00 | 45.57 | 3.82 |
9 | 10 | 5.774690 | AGGAAAATCCATTTCTTGCTACACA | 59.225 | 36.000 | 0.00 | 0.00 | 45.57 | 3.72 |
10 | 11 | 6.095377 | CAGGAAAATCCATTTCTTGCTACAC | 58.905 | 40.000 | 0.00 | 0.00 | 44.77 | 2.90 |
11 | 12 | 6.271488 | CAGGAAAATCCATTTCTTGCTACA | 57.729 | 37.500 | 0.00 | 0.00 | 44.77 | 2.74 |
17 | 18 | 6.616237 | AGCAATCAGGAAAATCCATTTCTT | 57.384 | 33.333 | 0.00 | 0.00 | 45.57 | 2.52 |
18 | 19 | 6.664816 | TGTAGCAATCAGGAAAATCCATTTCT | 59.335 | 34.615 | 0.00 | 0.00 | 45.57 | 2.52 |
19 | 20 | 6.866480 | TGTAGCAATCAGGAAAATCCATTTC | 58.134 | 36.000 | 0.00 | 0.00 | 45.55 | 2.17 |
20 | 21 | 6.855763 | TGTAGCAATCAGGAAAATCCATTT | 57.144 | 33.333 | 0.00 | 0.00 | 39.61 | 2.32 |
21 | 22 | 6.608405 | TCATGTAGCAATCAGGAAAATCCATT | 59.392 | 34.615 | 0.00 | 0.00 | 39.61 | 3.16 |
22 | 23 | 6.131264 | TCATGTAGCAATCAGGAAAATCCAT | 58.869 | 36.000 | 0.00 | 0.00 | 39.61 | 3.41 |
23 | 24 | 5.508567 | TCATGTAGCAATCAGGAAAATCCA | 58.491 | 37.500 | 0.00 | 0.00 | 39.61 | 3.41 |
24 | 25 | 6.455360 | TTCATGTAGCAATCAGGAAAATCC | 57.545 | 37.500 | 0.00 | 0.00 | 33.72 | 3.01 |
30 | 31 | 8.773645 | CGTATTATTTTCATGTAGCAATCAGGA | 58.226 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
31 | 32 | 7.535258 | GCGTATTATTTTCATGTAGCAATCAGG | 59.465 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
32 | 33 | 8.285394 | AGCGTATTATTTTCATGTAGCAATCAG | 58.715 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
33 | 34 | 8.153479 | AGCGTATTATTTTCATGTAGCAATCA | 57.847 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
34 | 35 | 9.530129 | GTAGCGTATTATTTTCATGTAGCAATC | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 2.67 |
35 | 36 | 9.273016 | AGTAGCGTATTATTTTCATGTAGCAAT | 57.727 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
36 | 37 | 8.657074 | AGTAGCGTATTATTTTCATGTAGCAA | 57.343 | 30.769 | 0.00 | 0.00 | 0.00 | 3.91 |
37 | 38 | 8.547894 | CAAGTAGCGTATTATTTTCATGTAGCA | 58.452 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
38 | 39 | 8.548721 | ACAAGTAGCGTATTATTTTCATGTAGC | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
47 | 48 | 9.426837 | TCACACTAAACAAGTAGCGTATTATTT | 57.573 | 29.630 | 0.00 | 0.00 | 35.76 | 1.40 |
48 | 49 | 8.991243 | TCACACTAAACAAGTAGCGTATTATT | 57.009 | 30.769 | 0.00 | 0.00 | 35.76 | 1.40 |
49 | 50 | 8.991243 | TTCACACTAAACAAGTAGCGTATTAT | 57.009 | 30.769 | 0.00 | 0.00 | 35.76 | 1.28 |
50 | 51 | 8.865978 | CATTCACACTAAACAAGTAGCGTATTA | 58.134 | 33.333 | 0.00 | 0.00 | 35.76 | 0.98 |
51 | 52 | 7.601130 | TCATTCACACTAAACAAGTAGCGTATT | 59.399 | 33.333 | 0.00 | 0.00 | 35.76 | 1.89 |
52 | 53 | 7.063074 | GTCATTCACACTAAACAAGTAGCGTAT | 59.937 | 37.037 | 0.00 | 0.00 | 35.76 | 3.06 |
53 | 54 | 6.364165 | GTCATTCACACTAAACAAGTAGCGTA | 59.636 | 38.462 | 0.00 | 0.00 | 35.76 | 4.42 |
54 | 55 | 5.176958 | GTCATTCACACTAAACAAGTAGCGT | 59.823 | 40.000 | 0.00 | 0.00 | 35.76 | 5.07 |
55 | 56 | 5.176774 | TGTCATTCACACTAAACAAGTAGCG | 59.823 | 40.000 | 0.00 | 0.00 | 35.76 | 4.26 |
56 | 57 | 6.539649 | TGTCATTCACACTAAACAAGTAGC | 57.460 | 37.500 | 0.00 | 0.00 | 35.76 | 3.58 |
57 | 58 | 8.773645 | TGATTGTCATTCACACTAAACAAGTAG | 58.226 | 33.333 | 0.00 | 0.00 | 35.76 | 2.57 |
58 | 59 | 8.669946 | TGATTGTCATTCACACTAAACAAGTA | 57.330 | 30.769 | 0.00 | 0.00 | 35.76 | 2.24 |
59 | 60 | 7.566760 | TGATTGTCATTCACACTAAACAAGT | 57.433 | 32.000 | 0.00 | 0.00 | 39.81 | 3.16 |
72 | 73 | 9.829507 | CCCTCTAGGATATATTGATTGTCATTC | 57.170 | 37.037 | 0.00 | 0.00 | 38.24 | 2.67 |
73 | 74 | 8.270744 | GCCCTCTAGGATATATTGATTGTCATT | 58.729 | 37.037 | 0.00 | 0.00 | 38.24 | 2.57 |
74 | 75 | 7.626890 | AGCCCTCTAGGATATATTGATTGTCAT | 59.373 | 37.037 | 0.00 | 0.00 | 38.24 | 3.06 |
75 | 76 | 6.962311 | AGCCCTCTAGGATATATTGATTGTCA | 59.038 | 38.462 | 0.00 | 0.00 | 38.24 | 3.58 |
76 | 77 | 7.124901 | TGAGCCCTCTAGGATATATTGATTGTC | 59.875 | 40.741 | 0.00 | 0.00 | 38.24 | 3.18 |
77 | 78 | 6.962311 | TGAGCCCTCTAGGATATATTGATTGT | 59.038 | 38.462 | 0.00 | 0.00 | 38.24 | 2.71 |
78 | 79 | 7.429374 | TGAGCCCTCTAGGATATATTGATTG | 57.571 | 40.000 | 0.00 | 0.00 | 38.24 | 2.67 |
79 | 80 | 6.099557 | GCTGAGCCCTCTAGGATATATTGATT | 59.900 | 42.308 | 0.00 | 0.00 | 38.24 | 2.57 |
80 | 81 | 5.602145 | GCTGAGCCCTCTAGGATATATTGAT | 59.398 | 44.000 | 0.00 | 0.00 | 38.24 | 2.57 |
81 | 82 | 4.959210 | GCTGAGCCCTCTAGGATATATTGA | 59.041 | 45.833 | 0.00 | 0.00 | 38.24 | 2.57 |
82 | 83 | 4.961730 | AGCTGAGCCCTCTAGGATATATTG | 59.038 | 45.833 | 0.00 | 0.00 | 38.24 | 1.90 |
83 | 84 | 5.208121 | GAGCTGAGCCCTCTAGGATATATT | 58.792 | 45.833 | 0.00 | 0.00 | 38.24 | 1.28 |
84 | 85 | 4.231658 | TGAGCTGAGCCCTCTAGGATATAT | 59.768 | 45.833 | 0.00 | 0.00 | 38.24 | 0.86 |
85 | 86 | 3.593780 | TGAGCTGAGCCCTCTAGGATATA | 59.406 | 47.826 | 0.00 | 0.00 | 38.24 | 0.86 |
86 | 87 | 2.381618 | TGAGCTGAGCCCTCTAGGATAT | 59.618 | 50.000 | 0.00 | 0.00 | 38.24 | 1.63 |
87 | 88 | 1.783365 | TGAGCTGAGCCCTCTAGGATA | 59.217 | 52.381 | 0.00 | 0.00 | 38.24 | 2.59 |
88 | 89 | 0.560193 | TGAGCTGAGCCCTCTAGGAT | 59.440 | 55.000 | 0.00 | 0.00 | 38.24 | 3.24 |
89 | 90 | 0.560193 | ATGAGCTGAGCCCTCTAGGA | 59.440 | 55.000 | 0.00 | 0.00 | 38.24 | 2.94 |
90 | 91 | 1.422531 | AATGAGCTGAGCCCTCTAGG | 58.577 | 55.000 | 0.00 | 0.00 | 39.47 | 3.02 |
91 | 92 | 3.577848 | ACATAATGAGCTGAGCCCTCTAG | 59.422 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
92 | 93 | 3.581101 | ACATAATGAGCTGAGCCCTCTA | 58.419 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
93 | 94 | 2.406559 | ACATAATGAGCTGAGCCCTCT | 58.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
94 | 95 | 2.926778 | ACATAATGAGCTGAGCCCTC | 57.073 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
95 | 96 | 4.166539 | AGATACATAATGAGCTGAGCCCT | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 5.19 |
96 | 97 | 4.550076 | AGATACATAATGAGCTGAGCCC | 57.450 | 45.455 | 0.00 | 0.00 | 0.00 | 5.19 |
97 | 98 | 5.180868 | CCAAAGATACATAATGAGCTGAGCC | 59.819 | 44.000 | 0.00 | 0.00 | 0.00 | 4.70 |
98 | 99 | 5.762218 | ACCAAAGATACATAATGAGCTGAGC | 59.238 | 40.000 | 0.00 | 0.00 | 0.00 | 4.26 |
99 | 100 | 7.215789 | AGACCAAAGATACATAATGAGCTGAG | 58.784 | 38.462 | 0.00 | 0.00 | 0.00 | 3.35 |
100 | 101 | 7.129457 | AGACCAAAGATACATAATGAGCTGA | 57.871 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
101 | 102 | 7.798596 | AAGACCAAAGATACATAATGAGCTG | 57.201 | 36.000 | 0.00 | 0.00 | 0.00 | 4.24 |
111 | 112 | 9.434275 | TGAGATCCTTATAAGACCAAAGATACA | 57.566 | 33.333 | 14.28 | 7.79 | 0.00 | 2.29 |
112 | 113 | 9.921637 | CTGAGATCCTTATAAGACCAAAGATAC | 57.078 | 37.037 | 14.28 | 5.77 | 0.00 | 2.24 |
113 | 114 | 9.883293 | TCTGAGATCCTTATAAGACCAAAGATA | 57.117 | 33.333 | 14.28 | 0.00 | 0.00 | 1.98 |
114 | 115 | 8.789767 | TCTGAGATCCTTATAAGACCAAAGAT | 57.210 | 34.615 | 14.28 | 6.70 | 0.00 | 2.40 |
115 | 116 | 8.646004 | CATCTGAGATCCTTATAAGACCAAAGA | 58.354 | 37.037 | 14.28 | 9.42 | 0.00 | 2.52 |
116 | 117 | 7.877097 | CCATCTGAGATCCTTATAAGACCAAAG | 59.123 | 40.741 | 14.28 | 4.75 | 0.00 | 2.77 |
117 | 118 | 7.348274 | ACCATCTGAGATCCTTATAAGACCAAA | 59.652 | 37.037 | 14.28 | 0.00 | 0.00 | 3.28 |
118 | 119 | 6.846505 | ACCATCTGAGATCCTTATAAGACCAA | 59.153 | 38.462 | 14.28 | 0.00 | 0.00 | 3.67 |
119 | 120 | 6.268617 | CACCATCTGAGATCCTTATAAGACCA | 59.731 | 42.308 | 14.28 | 3.70 | 0.00 | 4.02 |
120 | 121 | 6.295575 | CCACCATCTGAGATCCTTATAAGACC | 60.296 | 46.154 | 14.28 | 2.80 | 0.00 | 3.85 |
121 | 122 | 6.696411 | CCACCATCTGAGATCCTTATAAGAC | 58.304 | 44.000 | 14.28 | 5.32 | 0.00 | 3.01 |
122 | 123 | 5.247110 | GCCACCATCTGAGATCCTTATAAGA | 59.753 | 44.000 | 14.28 | 0.88 | 0.00 | 2.10 |
123 | 124 | 5.486526 | GCCACCATCTGAGATCCTTATAAG | 58.513 | 45.833 | 5.43 | 5.43 | 0.00 | 1.73 |
124 | 125 | 4.021104 | CGCCACCATCTGAGATCCTTATAA | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 0.98 |
125 | 126 | 3.511540 | CGCCACCATCTGAGATCCTTATA | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
126 | 127 | 2.301296 | CGCCACCATCTGAGATCCTTAT | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
127 | 128 | 1.688735 | CGCCACCATCTGAGATCCTTA | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
128 | 129 | 0.467384 | CGCCACCATCTGAGATCCTT | 59.533 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
129 | 130 | 1.406065 | CCGCCACCATCTGAGATCCT | 61.406 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
130 | 131 | 1.070445 | CCGCCACCATCTGAGATCC | 59.930 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
131 | 132 | 1.596477 | GCCGCCACCATCTGAGATC | 60.596 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
132 | 133 | 2.507944 | GCCGCCACCATCTGAGAT | 59.492 | 61.111 | 0.00 | 0.00 | 0.00 | 2.75 |
133 | 134 | 4.147449 | CGCCGCCACCATCTGAGA | 62.147 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
145 | 146 | 2.789203 | CTAAGAGTGAACGCGCCGC | 61.789 | 63.158 | 5.73 | 0.00 | 0.00 | 6.53 |
146 | 147 | 2.158959 | CCTAAGAGTGAACGCGCCG | 61.159 | 63.158 | 5.73 | 0.00 | 0.00 | 6.46 |
147 | 148 | 1.810030 | CCCTAAGAGTGAACGCGCC | 60.810 | 63.158 | 5.73 | 0.00 | 0.00 | 6.53 |
148 | 149 | 0.179108 | ATCCCTAAGAGTGAACGCGC | 60.179 | 55.000 | 5.73 | 0.00 | 0.00 | 6.86 |
149 | 150 | 2.295253 | AATCCCTAAGAGTGAACGCG | 57.705 | 50.000 | 3.53 | 3.53 | 0.00 | 6.01 |
150 | 151 | 3.132467 | AGGTAATCCCTAAGAGTGAACGC | 59.868 | 47.826 | 0.00 | 0.00 | 43.87 | 4.84 |
151 | 152 | 4.645588 | AGAGGTAATCCCTAAGAGTGAACG | 59.354 | 45.833 | 0.00 | 0.00 | 46.51 | 3.95 |
152 | 153 | 6.547930 | AAGAGGTAATCCCTAAGAGTGAAC | 57.452 | 41.667 | 0.00 | 0.00 | 46.51 | 3.18 |
153 | 154 | 7.899709 | ACTTAAGAGGTAATCCCTAAGAGTGAA | 59.100 | 37.037 | 10.09 | 0.00 | 46.51 | 3.18 |
154 | 155 | 7.420029 | ACTTAAGAGGTAATCCCTAAGAGTGA | 58.580 | 38.462 | 10.09 | 0.00 | 46.51 | 3.41 |
155 | 156 | 7.663043 | ACTTAAGAGGTAATCCCTAAGAGTG | 57.337 | 40.000 | 10.09 | 0.00 | 46.51 | 3.51 |
156 | 157 | 7.364851 | GCAACTTAAGAGGTAATCCCTAAGAGT | 60.365 | 40.741 | 10.09 | 0.00 | 46.51 | 3.24 |
157 | 158 | 6.987404 | GCAACTTAAGAGGTAATCCCTAAGAG | 59.013 | 42.308 | 10.09 | 0.00 | 46.51 | 2.85 |
158 | 159 | 6.672657 | AGCAACTTAAGAGGTAATCCCTAAGA | 59.327 | 38.462 | 10.09 | 0.00 | 46.51 | 2.10 |
159 | 160 | 6.890293 | AGCAACTTAAGAGGTAATCCCTAAG | 58.110 | 40.000 | 10.09 | 0.00 | 46.51 | 2.18 |
160 | 161 | 6.886178 | AGCAACTTAAGAGGTAATCCCTAA | 57.114 | 37.500 | 10.09 | 0.00 | 46.51 | 2.69 |
161 | 162 | 7.983166 | TTAGCAACTTAAGAGGTAATCCCTA | 57.017 | 36.000 | 10.09 | 0.00 | 46.51 | 3.53 |
163 | 164 | 7.933215 | TTTTAGCAACTTAAGAGGTAATCCC | 57.067 | 36.000 | 10.09 | 0.00 | 0.00 | 3.85 |
235 | 236 | 9.796120 | CAGTCCCTAATTTTATGCGAATAAAAA | 57.204 | 29.630 | 22.17 | 8.68 | 38.84 | 1.94 |
236 | 237 | 7.918562 | GCAGTCCCTAATTTTATGCGAATAAAA | 59.081 | 33.333 | 20.93 | 20.93 | 39.44 | 1.52 |
237 | 238 | 7.067615 | TGCAGTCCCTAATTTTATGCGAATAAA | 59.932 | 33.333 | 4.35 | 4.35 | 35.00 | 1.40 |
238 | 239 | 6.544197 | TGCAGTCCCTAATTTTATGCGAATAA | 59.456 | 34.615 | 0.00 | 0.00 | 35.00 | 1.40 |
239 | 240 | 6.058833 | TGCAGTCCCTAATTTTATGCGAATA | 58.941 | 36.000 | 0.00 | 0.00 | 35.00 | 1.75 |
240 | 241 | 4.887071 | TGCAGTCCCTAATTTTATGCGAAT | 59.113 | 37.500 | 0.00 | 0.00 | 35.00 | 3.34 |
241 | 242 | 4.265893 | TGCAGTCCCTAATTTTATGCGAA | 58.734 | 39.130 | 0.00 | 0.00 | 35.00 | 4.70 |
242 | 243 | 3.879998 | TGCAGTCCCTAATTTTATGCGA | 58.120 | 40.909 | 0.00 | 0.00 | 35.00 | 5.10 |
243 | 244 | 4.630894 | TTGCAGTCCCTAATTTTATGCG | 57.369 | 40.909 | 0.00 | 0.00 | 35.00 | 4.73 |
244 | 245 | 5.979517 | GTCATTGCAGTCCCTAATTTTATGC | 59.020 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
245 | 246 | 6.974622 | GTGTCATTGCAGTCCCTAATTTTATG | 59.025 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
246 | 247 | 6.663093 | TGTGTCATTGCAGTCCCTAATTTTAT | 59.337 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
247 | 248 | 6.007076 | TGTGTCATTGCAGTCCCTAATTTTA | 58.993 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
248 | 249 | 4.832266 | TGTGTCATTGCAGTCCCTAATTTT | 59.168 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
249 | 250 | 4.218417 | GTGTGTCATTGCAGTCCCTAATTT | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
250 | 251 | 3.758554 | GTGTGTCATTGCAGTCCCTAATT | 59.241 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
251 | 252 | 3.244875 | TGTGTGTCATTGCAGTCCCTAAT | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
252 | 253 | 2.105649 | TGTGTGTCATTGCAGTCCCTAA | 59.894 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
253 | 254 | 1.696884 | TGTGTGTCATTGCAGTCCCTA | 59.303 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
254 | 255 | 0.473755 | TGTGTGTCATTGCAGTCCCT | 59.526 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
255 | 256 | 0.593128 | GTGTGTGTCATTGCAGTCCC | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
256 | 257 | 1.308047 | TGTGTGTGTCATTGCAGTCC | 58.692 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
257 | 258 | 3.419264 | TTTGTGTGTGTCATTGCAGTC | 57.581 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
258 | 259 | 3.865011 | TTTTGTGTGTGTCATTGCAGT | 57.135 | 38.095 | 0.00 | 0.00 | 0.00 | 4.40 |
259 | 260 | 4.804665 | TGAATTTTGTGTGTGTCATTGCAG | 59.195 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
260 | 261 | 4.752146 | TGAATTTTGTGTGTGTCATTGCA | 58.248 | 34.783 | 0.00 | 0.00 | 0.00 | 4.08 |
261 | 262 | 5.672051 | CATGAATTTTGTGTGTGTCATTGC | 58.328 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
262 | 263 | 5.234543 | TGCATGAATTTTGTGTGTGTCATTG | 59.765 | 36.000 | 0.00 | 0.00 | 0.00 | 2.82 |
263 | 264 | 5.358090 | TGCATGAATTTTGTGTGTGTCATT | 58.642 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
264 | 265 | 4.946445 | TGCATGAATTTTGTGTGTGTCAT | 58.054 | 34.783 | 0.00 | 0.00 | 0.00 | 3.06 |
265 | 266 | 4.382345 | TGCATGAATTTTGTGTGTGTCA | 57.618 | 36.364 | 0.00 | 0.00 | 0.00 | 3.58 |
266 | 267 | 5.042593 | TCTTGCATGAATTTTGTGTGTGTC | 58.957 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
267 | 268 | 5.008619 | TCTTGCATGAATTTTGTGTGTGT | 57.991 | 34.783 | 0.00 | 0.00 | 0.00 | 3.72 |
268 | 269 | 4.084745 | GCTCTTGCATGAATTTTGTGTGTG | 60.085 | 41.667 | 0.00 | 0.00 | 39.41 | 3.82 |
269 | 270 | 4.053295 | GCTCTTGCATGAATTTTGTGTGT | 58.947 | 39.130 | 0.00 | 0.00 | 39.41 | 3.72 |
270 | 271 | 4.052608 | TGCTCTTGCATGAATTTTGTGTG | 58.947 | 39.130 | 0.00 | 0.00 | 45.31 | 3.82 |
271 | 272 | 4.325028 | TGCTCTTGCATGAATTTTGTGT | 57.675 | 36.364 | 0.00 | 0.00 | 45.31 | 3.72 |
284 | 285 | 9.573133 | AACTATGTTTTAAATGTATGCTCTTGC | 57.427 | 29.630 | 0.00 | 0.00 | 40.20 | 4.01 |
288 | 289 | 9.937175 | GGAGAACTATGTTTTAAATGTATGCTC | 57.063 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
289 | 290 | 8.903820 | GGGAGAACTATGTTTTAAATGTATGCT | 58.096 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
290 | 291 | 8.903820 | AGGGAGAACTATGTTTTAAATGTATGC | 58.096 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
294 | 295 | 8.934023 | TTGAGGGAGAACTATGTTTTAAATGT | 57.066 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
297 | 298 | 9.457436 | GGTATTGAGGGAGAACTATGTTTTAAA | 57.543 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
298 | 299 | 8.832735 | AGGTATTGAGGGAGAACTATGTTTTAA | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
299 | 300 | 8.388656 | AGGTATTGAGGGAGAACTATGTTTTA | 57.611 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
300 | 301 | 7.272144 | AGGTATTGAGGGAGAACTATGTTTT | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
301 | 302 | 6.893020 | AGGTATTGAGGGAGAACTATGTTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
302 | 303 | 6.893020 | AAGGTATTGAGGGAGAACTATGTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
303 | 304 | 6.893020 | AAAGGTATTGAGGGAGAACTATGT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
350 | 351 | 9.559732 | TCAAAGATAGAGATGTTTGACTTTTGA | 57.440 | 29.630 | 6.24 | 0.00 | 45.48 | 2.69 |
358 | 359 | 7.678947 | ACTTGGTCAAAGATAGAGATGTTTG | 57.321 | 36.000 | 0.00 | 2.10 | 44.07 | 2.93 |
359 | 360 | 8.571336 | CAAACTTGGTCAAAGATAGAGATGTTT | 58.429 | 33.333 | 0.00 | 0.00 | 39.38 | 2.83 |
360 | 361 | 7.721399 | ACAAACTTGGTCAAAGATAGAGATGTT | 59.279 | 33.333 | 0.00 | 0.00 | 39.38 | 2.71 |
361 | 362 | 7.227156 | ACAAACTTGGTCAAAGATAGAGATGT | 58.773 | 34.615 | 0.00 | 0.00 | 39.38 | 3.06 |
362 | 363 | 7.678947 | ACAAACTTGGTCAAAGATAGAGATG | 57.321 | 36.000 | 0.00 | 0.00 | 39.38 | 2.90 |
363 | 364 | 7.175641 | CCAACAAACTTGGTCAAAGATAGAGAT | 59.824 | 37.037 | 0.00 | 0.00 | 39.38 | 2.75 |
364 | 365 | 6.486657 | CCAACAAACTTGGTCAAAGATAGAGA | 59.513 | 38.462 | 0.00 | 0.00 | 39.38 | 3.10 |
365 | 366 | 6.486657 | TCCAACAAACTTGGTCAAAGATAGAG | 59.513 | 38.462 | 0.00 | 0.00 | 40.40 | 2.43 |
366 | 367 | 6.361433 | TCCAACAAACTTGGTCAAAGATAGA | 58.639 | 36.000 | 0.00 | 0.00 | 40.40 | 1.98 |
367 | 368 | 6.633500 | TCCAACAAACTTGGTCAAAGATAG | 57.367 | 37.500 | 0.00 | 0.00 | 40.40 | 2.08 |
368 | 369 | 7.123547 | ACTTTCCAACAAACTTGGTCAAAGATA | 59.876 | 33.333 | 15.20 | 0.00 | 36.38 | 1.98 |
369 | 370 | 5.930837 | TTCCAACAAACTTGGTCAAAGAT | 57.069 | 34.783 | 0.00 | 0.00 | 40.40 | 2.40 |
370 | 371 | 5.245075 | ACTTTCCAACAAACTTGGTCAAAGA | 59.755 | 36.000 | 15.20 | 0.00 | 36.38 | 2.52 |
371 | 372 | 5.478407 | ACTTTCCAACAAACTTGGTCAAAG | 58.522 | 37.500 | 9.90 | 9.90 | 38.40 | 2.77 |
372 | 373 | 5.476091 | ACTTTCCAACAAACTTGGTCAAA | 57.524 | 34.783 | 0.00 | 0.00 | 40.40 | 2.69 |
373 | 374 | 6.378564 | TGATACTTTCCAACAAACTTGGTCAA | 59.621 | 34.615 | 0.00 | 0.00 | 40.40 | 3.18 |
374 | 375 | 5.888724 | TGATACTTTCCAACAAACTTGGTCA | 59.111 | 36.000 | 0.00 | 0.00 | 40.40 | 4.02 |
375 | 376 | 6.385649 | TGATACTTTCCAACAAACTTGGTC | 57.614 | 37.500 | 0.00 | 0.00 | 40.40 | 4.02 |
376 | 377 | 6.153680 | TGTTGATACTTTCCAACAAACTTGGT | 59.846 | 34.615 | 0.00 | 0.00 | 46.44 | 3.67 |
377 | 378 | 6.568869 | TGTTGATACTTTCCAACAAACTTGG | 58.431 | 36.000 | 0.00 | 0.00 | 46.44 | 3.61 |
385 | 386 | 7.907214 | AGTGTAGATGTTGATACTTTCCAAC | 57.093 | 36.000 | 0.00 | 0.00 | 42.04 | 3.77 |
386 | 387 | 9.817809 | GATAGTGTAGATGTTGATACTTTCCAA | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
387 | 388 | 8.977412 | TGATAGTGTAGATGTTGATACTTTCCA | 58.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.53 |
388 | 389 | 9.817809 | TTGATAGTGTAGATGTTGATACTTTCC | 57.182 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
462 | 463 | 9.515226 | TCTATTTGACCAACTTTATAGCAAACT | 57.485 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
757 | 758 | 7.394016 | TCCTTATGAATGAACTGCTGAGTAAA | 58.606 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
758 | 759 | 6.946340 | TCCTTATGAATGAACTGCTGAGTAA | 58.054 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
759 | 760 | 6.544928 | TCCTTATGAATGAACTGCTGAGTA | 57.455 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
760 | 761 | 5.426689 | TCCTTATGAATGAACTGCTGAGT | 57.573 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
761 | 762 | 6.373774 | AGTTTCCTTATGAATGAACTGCTGAG | 59.626 | 38.462 | 0.00 | 0.00 | 31.67 | 3.35 |
762 | 763 | 6.240894 | AGTTTCCTTATGAATGAACTGCTGA | 58.759 | 36.000 | 0.00 | 0.00 | 31.67 | 4.26 |
763 | 764 | 6.506500 | AGTTTCCTTATGAATGAACTGCTG | 57.493 | 37.500 | 0.00 | 0.00 | 31.67 | 4.41 |
764 | 765 | 7.337942 | CCTTAGTTTCCTTATGAATGAACTGCT | 59.662 | 37.037 | 0.00 | 0.00 | 31.67 | 4.24 |
765 | 766 | 7.121315 | ACCTTAGTTTCCTTATGAATGAACTGC | 59.879 | 37.037 | 0.00 | 0.00 | 31.67 | 4.40 |
766 | 767 | 8.567285 | ACCTTAGTTTCCTTATGAATGAACTG | 57.433 | 34.615 | 0.00 | 0.00 | 31.67 | 3.16 |
767 | 768 | 8.383175 | TGACCTTAGTTTCCTTATGAATGAACT | 58.617 | 33.333 | 0.00 | 0.00 | 31.67 | 3.01 |
768 | 769 | 8.561738 | TGACCTTAGTTTCCTTATGAATGAAC | 57.438 | 34.615 | 0.00 | 0.00 | 31.67 | 3.18 |
769 | 770 | 9.753674 | ATTGACCTTAGTTTCCTTATGAATGAA | 57.246 | 29.630 | 0.00 | 0.00 | 31.67 | 2.57 |
780 | 781 | 9.549078 | CCTCTTTCTATATTGACCTTAGTTTCC | 57.451 | 37.037 | 0.00 | 0.00 | 0.00 | 3.13 |
782 | 783 | 9.892130 | CACCTCTTTCTATATTGACCTTAGTTT | 57.108 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
783 | 784 | 8.487028 | CCACCTCTTTCTATATTGACCTTAGTT | 58.513 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
784 | 785 | 7.624077 | ACCACCTCTTTCTATATTGACCTTAGT | 59.376 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
785 | 786 | 8.024145 | ACCACCTCTTTCTATATTGACCTTAG | 57.976 | 38.462 | 0.00 | 0.00 | 0.00 | 2.18 |
786 | 787 | 7.989947 | ACCACCTCTTTCTATATTGACCTTA | 57.010 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
787 | 788 | 6.893020 | ACCACCTCTTTCTATATTGACCTT | 57.107 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
788 | 789 | 6.215636 | ACAACCACCTCTTTCTATATTGACCT | 59.784 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
789 | 790 | 6.316390 | CACAACCACCTCTTTCTATATTGACC | 59.684 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
790 | 791 | 7.103641 | TCACAACCACCTCTTTCTATATTGAC | 58.896 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
791 | 792 | 7.252612 | TCACAACCACCTCTTTCTATATTGA | 57.747 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
792 | 793 | 7.921786 | TTCACAACCACCTCTTTCTATATTG | 57.078 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
796 | 797 | 9.838339 | CTTATATTCACAACCACCTCTTTCTAT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
797 | 798 | 9.042450 | TCTTATATTCACAACCACCTCTTTCTA | 57.958 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
798 | 799 | 7.918076 | TCTTATATTCACAACCACCTCTTTCT | 58.082 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
799 | 800 | 8.451748 | GTTCTTATATTCACAACCACCTCTTTC | 58.548 | 37.037 | 0.00 | 0.00 | 0.00 | 2.62 |
800 | 801 | 8.164070 | AGTTCTTATATTCACAACCACCTCTTT | 58.836 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
801 | 802 | 7.690256 | AGTTCTTATATTCACAACCACCTCTT | 58.310 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
802 | 803 | 7.259088 | AGTTCTTATATTCACAACCACCTCT | 57.741 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
803 | 804 | 7.390718 | ACAAGTTCTTATATTCACAACCACCTC | 59.609 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
804 | 805 | 7.231467 | ACAAGTTCTTATATTCACAACCACCT | 58.769 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
805 | 806 | 7.448748 | ACAAGTTCTTATATTCACAACCACC | 57.551 | 36.000 | 0.00 | 0.00 | 0.00 | 4.61 |
806 | 807 | 8.448615 | GGTACAAGTTCTTATATTCACAACCAC | 58.551 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
807 | 808 | 8.380099 | AGGTACAAGTTCTTATATTCACAACCA | 58.620 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
808 | 809 | 8.788325 | AGGTACAAGTTCTTATATTCACAACC | 57.212 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
811 | 812 | 9.653287 | CAGAAGGTACAAGTTCTTATATTCACA | 57.347 | 33.333 | 0.00 | 0.00 | 30.31 | 3.58 |
812 | 813 | 9.654663 | ACAGAAGGTACAAGTTCTTATATTCAC | 57.345 | 33.333 | 0.00 | 0.00 | 30.31 | 3.18 |
813 | 814 | 9.653287 | CACAGAAGGTACAAGTTCTTATATTCA | 57.347 | 33.333 | 0.00 | 0.00 | 30.31 | 2.57 |
814 | 815 | 8.604890 | GCACAGAAGGTACAAGTTCTTATATTC | 58.395 | 37.037 | 0.00 | 0.00 | 30.31 | 1.75 |
815 | 816 | 8.100791 | TGCACAGAAGGTACAAGTTCTTATATT | 58.899 | 33.333 | 0.00 | 0.00 | 30.31 | 1.28 |
816 | 817 | 7.549488 | GTGCACAGAAGGTACAAGTTCTTATAT | 59.451 | 37.037 | 13.17 | 0.00 | 30.31 | 0.86 |
817 | 818 | 6.872020 | GTGCACAGAAGGTACAAGTTCTTATA | 59.128 | 38.462 | 13.17 | 0.00 | 30.31 | 0.98 |
818 | 819 | 5.701290 | GTGCACAGAAGGTACAAGTTCTTAT | 59.299 | 40.000 | 13.17 | 0.00 | 30.31 | 1.73 |
819 | 820 | 5.054477 | GTGCACAGAAGGTACAAGTTCTTA | 58.946 | 41.667 | 13.17 | 0.00 | 30.31 | 2.10 |
820 | 821 | 3.877508 | GTGCACAGAAGGTACAAGTTCTT | 59.122 | 43.478 | 13.17 | 0.00 | 30.31 | 2.52 |
821 | 822 | 3.134804 | AGTGCACAGAAGGTACAAGTTCT | 59.865 | 43.478 | 21.04 | 0.00 | 33.09 | 3.01 |
822 | 823 | 3.467803 | AGTGCACAGAAGGTACAAGTTC | 58.532 | 45.455 | 21.04 | 0.00 | 0.00 | 3.01 |
823 | 824 | 3.560636 | AGTGCACAGAAGGTACAAGTT | 57.439 | 42.857 | 21.04 | 0.00 | 0.00 | 2.66 |
824 | 825 | 3.560636 | AAGTGCACAGAAGGTACAAGT | 57.439 | 42.857 | 21.04 | 0.00 | 0.00 | 3.16 |
825 | 826 | 4.377021 | TGTAAGTGCACAGAAGGTACAAG | 58.623 | 43.478 | 21.04 | 0.00 | 0.00 | 3.16 |
826 | 827 | 4.409718 | TGTAAGTGCACAGAAGGTACAA | 57.590 | 40.909 | 21.04 | 0.74 | 0.00 | 2.41 |
827 | 828 | 4.617253 | ATGTAAGTGCACAGAAGGTACA | 57.383 | 40.909 | 21.04 | 15.69 | 0.00 | 2.90 |
828 | 829 | 5.941948 | AAATGTAAGTGCACAGAAGGTAC | 57.058 | 39.130 | 21.04 | 10.93 | 0.00 | 3.34 |
829 | 830 | 6.952773 | AAAAATGTAAGTGCACAGAAGGTA | 57.047 | 33.333 | 21.04 | 0.00 | 0.00 | 3.08 |
830 | 831 | 5.852282 | AAAAATGTAAGTGCACAGAAGGT | 57.148 | 34.783 | 21.04 | 0.00 | 0.00 | 3.50 |
831 | 832 | 7.326789 | CACATAAAAATGTAAGTGCACAGAAGG | 59.673 | 37.037 | 21.04 | 0.00 | 32.74 | 3.46 |
832 | 833 | 7.148918 | GCACATAAAAATGTAAGTGCACAGAAG | 60.149 | 37.037 | 21.04 | 0.00 | 44.29 | 2.85 |
833 | 834 | 6.640499 | GCACATAAAAATGTAAGTGCACAGAA | 59.360 | 34.615 | 21.04 | 0.00 | 44.29 | 3.02 |
834 | 835 | 6.148948 | GCACATAAAAATGTAAGTGCACAGA | 58.851 | 36.000 | 21.04 | 2.62 | 44.29 | 3.41 |
835 | 836 | 6.380111 | GCACATAAAAATGTAAGTGCACAG | 57.620 | 37.500 | 21.04 | 0.00 | 44.29 | 3.66 |
839 | 840 | 5.163513 | AGCTGCACATAAAAATGTAAGTGC | 58.836 | 37.500 | 1.02 | 8.27 | 44.83 | 4.40 |
840 | 841 | 6.465781 | CGTAGCTGCACATAAAAATGTAAGTG | 59.534 | 38.462 | 1.02 | 0.00 | 32.74 | 3.16 |
904 | 905 | 1.512926 | TCGAGCAAAAAGAGAGCCAC | 58.487 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
921 | 922 | 7.786178 | TTTGACTCATATGTAAGGGAAATCG | 57.214 | 36.000 | 1.90 | 0.00 | 0.00 | 3.34 |
950 | 959 | 5.163953 | GCATGTGTAGATGTAGTGTGTCAAC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
984 | 993 | 3.397527 | ACTCATAGTGGGTGATGGGAAT | 58.602 | 45.455 | 0.00 | 0.00 | 23.94 | 3.01 |
1095 | 1104 | 7.016858 | ACCAACCAAAAGACACTATCTACCTTA | 59.983 | 37.037 | 0.00 | 0.00 | 36.27 | 2.69 |
1106 | 1115 | 2.165437 | TCTTGCACCAACCAAAAGACAC | 59.835 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1143 | 1155 | 2.123425 | CCGAGGCTGCTACCCCTA | 60.123 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1165 | 1177 | 2.936202 | AGGGGTTGACATGACATATGC | 58.064 | 47.619 | 1.58 | 0.00 | 0.00 | 3.14 |
1211 | 1223 | 4.325741 | CGTTTATCTCAGCAGAGTCAACTG | 59.674 | 45.833 | 5.98 | 6.17 | 42.66 | 3.16 |
1380 | 1395 | 0.038159 | CTCCGTCAAAGAAGTCGCCT | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1428 | 1444 | 1.072666 | CGCCGAGGGTAAACGTGTAC | 61.073 | 60.000 | 7.40 | 7.40 | 0.00 | 2.90 |
1479 | 1495 | 7.739995 | ATATTATATGGACTGGCTTAGCTCA | 57.260 | 36.000 | 3.59 | 0.00 | 0.00 | 4.26 |
1697 | 2382 | 3.532102 | ACCTGAAGTGGGACTAGGATTT | 58.468 | 45.455 | 0.00 | 0.00 | 32.86 | 2.17 |
1725 | 2410 | 2.689983 | AGATTGGATCGGATGGTTTTGC | 59.310 | 45.455 | 0.00 | 0.00 | 0.00 | 3.68 |
1731 | 2418 | 8.023021 | TCCTATATTAAGATTGGATCGGATGG | 57.977 | 38.462 | 8.88 | 0.00 | 0.00 | 3.51 |
1887 | 2580 | 2.122056 | ACCTTGTCCCTAGCCGGT | 59.878 | 61.111 | 1.90 | 0.00 | 0.00 | 5.28 |
1917 | 2610 | 4.100808 | AGCTTCTTTTGCACCAACCAATAA | 59.899 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2608 | 3933 | 5.185442 | TGTCAAATGCATACACAATCACCAT | 59.815 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2640 | 3965 | 6.607198 | CCACAGTTTTATAATCTGGGGTTGAT | 59.393 | 38.462 | 21.60 | 2.43 | 44.82 | 2.57 |
2707 | 4032 | 2.509548 | TGTAACCAAGGCAGCTATCCAT | 59.490 | 45.455 | 6.92 | 0.00 | 0.00 | 3.41 |
2937 | 4262 | 3.721087 | AAGTAGTCCCCCTTGTTGATG | 57.279 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
2949 | 4274 | 3.274288 | CTTGGCTCCATCAAAGTAGTCC | 58.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3102 | 4427 | 2.602456 | CCTATAGCATATAGGCGTCGCG | 60.602 | 54.545 | 11.75 | 0.00 | 39.27 | 5.87 |
3103 | 4428 | 2.358267 | ACCTATAGCATATAGGCGTCGC | 59.642 | 50.000 | 18.63 | 9.22 | 43.80 | 5.19 |
3104 | 4429 | 4.335874 | AGAACCTATAGCATATAGGCGTCG | 59.664 | 45.833 | 18.63 | 0.00 | 43.80 | 5.12 |
3286 | 4612 | 9.725019 | TCTTTGCGGAGAATATATAATGATGTT | 57.275 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
3531 | 4872 | 5.366482 | TTTATTGCTATGTAGGTGAGCCA | 57.634 | 39.130 | 0.00 | 0.00 | 35.24 | 4.75 |
3565 | 4906 | 2.027003 | TTCGATACGGGCCGAAAATT | 57.973 | 45.000 | 35.78 | 12.77 | 41.13 | 1.82 |
3587 | 4934 | 3.181506 | GCAGAAGAAAATTAGGACTGCCG | 60.182 | 47.826 | 0.00 | 0.00 | 41.88 | 5.69 |
3588 | 4935 | 3.758554 | TGCAGAAGAAAATTAGGACTGCC | 59.241 | 43.478 | 0.00 | 0.00 | 45.39 | 4.85 |
3589 | 4936 | 5.573337 | ATGCAGAAGAAAATTAGGACTGC | 57.427 | 39.130 | 0.00 | 0.00 | 45.92 | 4.40 |
3590 | 4937 | 8.273780 | AGTTATGCAGAAGAAAATTAGGACTG | 57.726 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
3591 | 4938 | 8.870075 | AAGTTATGCAGAAGAAAATTAGGACT | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
3592 | 4939 | 9.914131 | AAAAGTTATGCAGAAGAAAATTAGGAC | 57.086 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
3753 | 5998 | 4.047166 | TGGACCATCATTCTTGACCCTAT | 58.953 | 43.478 | 0.00 | 0.00 | 33.85 | 2.57 |
3756 | 6001 | 2.806945 | TGGACCATCATTCTTGACCC | 57.193 | 50.000 | 0.00 | 0.00 | 33.85 | 4.46 |
3780 | 6025 | 8.885722 | CAAGTACAAAACAAGGTTAGAACTGTA | 58.114 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
3782 | 6027 | 6.691388 | GCAAGTACAAAACAAGGTTAGAACTG | 59.309 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
3784 | 6029 | 6.792326 | AGCAAGTACAAAACAAGGTTAGAAC | 58.208 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3785 | 6030 | 7.254852 | CAAGCAAGTACAAAACAAGGTTAGAA | 58.745 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
3786 | 6031 | 6.679392 | GCAAGCAAGTACAAAACAAGGTTAGA | 60.679 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
3787 | 6032 | 5.458779 | GCAAGCAAGTACAAAACAAGGTTAG | 59.541 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3789 | 6034 | 4.081697 | AGCAAGCAAGTACAAAACAAGGTT | 60.082 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
3790 | 6035 | 3.447229 | AGCAAGCAAGTACAAAACAAGGT | 59.553 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
3791 | 6036 | 3.798337 | CAGCAAGCAAGTACAAAACAAGG | 59.202 | 43.478 | 0.00 | 0.00 | 0.00 | 3.61 |
3792 | 6037 | 3.243643 | GCAGCAAGCAAGTACAAAACAAG | 59.756 | 43.478 | 0.00 | 0.00 | 44.79 | 3.16 |
3846 | 6135 | 6.571520 | CGCTGACTTCGAAATTAATAGCAATC | 59.428 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
4066 | 6396 | 9.582648 | AAGTAGAATTCTCTCTTCTAGTATCCC | 57.417 | 37.037 | 12.24 | 0.00 | 37.71 | 3.85 |
4134 | 6464 | 6.891388 | TGTGGACTTCTTGTAAACTTAAGGA | 58.109 | 36.000 | 7.53 | 0.00 | 0.00 | 3.36 |
4156 | 6486 | 2.683211 | AAAGTTGAGGGGCAAGATGT | 57.317 | 45.000 | 0.00 | 0.00 | 37.12 | 3.06 |
4190 | 6520 | 8.802267 | CCTTTTGTTTTGAAATATGAGGGACTA | 58.198 | 33.333 | 0.00 | 0.00 | 41.55 | 2.59 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.