Multiple sequence alignment - TraesCS2A01G002400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G002400 chr2A 100.000 3029 0 0 1 3029 1366450 1363422 0.000000e+00 5594.0
1 TraesCS2A01G002400 chr2B 84.931 1586 99 66 652 2115 9725893 9724326 0.000000e+00 1476.0
2 TraesCS2A01G002400 chr2B 91.529 425 30 4 203 624 9726391 9725970 5.630000e-162 580.0
3 TraesCS2A01G002400 chr2B 95.855 193 7 1 5 196 9726645 9726453 8.150000e-81 311.0
4 TraesCS2A01G002400 chr2B 85.985 264 17 11 2404 2667 9723975 9723732 6.440000e-67 265.0
5 TraesCS2A01G002400 chr2B 87.778 90 5 4 2108 2191 9724296 9724207 1.920000e-17 100.0
6 TraesCS2A01G002400 chr2B 97.619 42 1 0 627 668 9725931 9725890 4.190000e-09 73.1
7 TraesCS2A01G002400 chr5D 91.327 196 8 5 2666 2854 400522310 400522117 3.000000e-65 259.0
8 TraesCS2A01G002400 chr5D 91.237 194 8 5 2668 2854 95508494 95508303 3.880000e-64 255.0
9 TraesCS2A01G002400 chr5D 82.154 325 24 15 2355 2667 249025074 249024772 6.480000e-62 248.0
10 TraesCS2A01G002400 chr5D 82.121 330 20 17 2355 2667 164103490 164103183 2.330000e-61 246.0
11 TraesCS2A01G002400 chr5D 92.941 170 6 3 2689 2854 147073463 147073296 3.020000e-60 243.0
12 TraesCS2A01G002400 chr5D 81.846 325 25 15 2355 2667 147073843 147073541 3.020000e-60 243.0
13 TraesCS2A01G002400 chr5D 92.941 170 6 3 2689 2854 164103105 164102938 3.020000e-60 243.0
14 TraesCS2A01G002400 chr5D 81.846 325 25 15 2355 2667 400522656 400522354 3.020000e-60 243.0
15 TraesCS2A01G002400 chr5D 95.349 43 2 0 1985 2027 400991016 400991058 5.420000e-08 69.4
16 TraesCS2A01G002400 chr5D 83.784 74 10 2 1717 1789 525322194 525322266 5.420000e-08 69.4
17 TraesCS2A01G002400 chr5D 85.938 64 9 0 1426 1489 525388642 525388705 5.420000e-08 69.4
18 TraesCS2A01G002400 chr1D 83.013 312 21 12 2367 2667 209002123 209002413 1.390000e-63 254.0
19 TraesCS2A01G002400 chr1D 82.263 327 22 14 2355 2667 179670484 179670788 1.800000e-62 250.0
20 TraesCS2A01G002400 chr1D 94.904 157 4 1 2689 2841 179670866 179671022 3.020000e-60 243.0
21 TraesCS2A01G002400 chr1D 97.561 41 1 0 1987 2027 492780425 492780465 1.510000e-08 71.3
22 TraesCS2A01G002400 chrUn 82.371 329 20 16 2355 2667 433388296 433388602 5.010000e-63 252.0
23 TraesCS2A01G002400 chrUn 83.750 240 11 11 2355 2588 418814962 418815179 5.120000e-48 202.0
24 TraesCS2A01G002400 chr4D 82.371 329 20 16 2355 2667 257334090 257333784 5.010000e-63 252.0
25 TraesCS2A01G002400 chr2D 82.371 329 20 16 2355 2667 71272609 71272303 5.010000e-63 252.0
26 TraesCS2A01G002400 chr2D 95.349 43 2 0 1985 2027 569552894 569552852 5.420000e-08 69.4
27 TraesCS2A01G002400 chr6D 82.263 327 22 15 2355 2667 188191274 188191578 1.800000e-62 250.0
28 TraesCS2A01G002400 chr6D 81.957 327 23 14 2355 2667 243690731 243690427 8.390000e-61 244.0
29 TraesCS2A01G002400 chr6D 94.904 157 4 1 2689 2841 188191656 188191812 3.020000e-60 243.0
30 TraesCS2A01G002400 chr7D 92.941 170 6 3 2689 2854 46342301 46342134 3.020000e-60 243.0
31 TraesCS2A01G002400 chr7D 92.941 170 6 3 2689 2854 617284222 617284055 3.020000e-60 243.0
32 TraesCS2A01G002400 chr3D 94.904 157 4 1 2689 2841 67947573 67947729 3.020000e-60 243.0
33 TraesCS2A01G002400 chr7B 82.206 281 22 9 2416 2695 13784695 13784442 1.830000e-52 217.0
34 TraesCS2A01G002400 chr4A 83.333 252 16 8 2416 2667 652790953 652791178 3.060000e-50 209.0
35 TraesCS2A01G002400 chr4A 86.047 86 12 0 1418 1503 113505801 113505716 3.220000e-15 93.5
36 TraesCS2A01G002400 chr4A 96.154 52 2 0 1448 1499 113579754 113579703 5.380000e-13 86.1
37 TraesCS2A01G002400 chr6A 90.244 82 8 0 1713 1794 611198045 611198126 1.150000e-19 108.0
38 TraesCS2A01G002400 chr4B 88.372 86 10 0 1418 1503 434714064 434714149 1.490000e-18 104.0
39 TraesCS2A01G002400 chr5B 85.135 74 9 2 1717 1789 659739869 659739941 1.160000e-09 75.0
40 TraesCS2A01G002400 chr5B 85.135 74 9 2 1717 1789 659743946 659744018 1.160000e-09 75.0
41 TraesCS2A01G002400 chr5A 89.655 58 4 2 1433 1489 651528213 651528157 4.190000e-09 73.1
42 TraesCS2A01G002400 chr5A 84.286 70 11 0 1420 1489 651791277 651791346 5.420000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G002400 chr2A 1363422 1366450 3028 True 5594.000000 5594 100.000000 1 3029 1 chr2A.!!$R1 3028
1 TraesCS2A01G002400 chr2B 9723732 9726645 2913 True 467.516667 1476 90.616167 5 2667 6 chr2B.!!$R1 2662
2 TraesCS2A01G002400 chr5D 400522117 400522656 539 True 251.000000 259 86.586500 2355 2854 2 chr5D.!!$R5 499
3 TraesCS2A01G002400 chr5D 164102938 164103490 552 True 244.500000 246 87.531000 2355 2854 2 chr5D.!!$R4 499
4 TraesCS2A01G002400 chr5D 147073296 147073843 547 True 243.000000 243 87.393500 2355 2854 2 chr5D.!!$R3 499
5 TraesCS2A01G002400 chr1D 179670484 179671022 538 False 246.500000 250 88.583500 2355 2841 2 chr1D.!!$F3 486
6 TraesCS2A01G002400 chr6D 188191274 188191812 538 False 246.500000 250 88.583500 2355 2841 2 chr6D.!!$F1 486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 198 0.096454 AGAAAAGGCGCGCGATTTAC 59.904 50.0 37.18 21.0 0.0 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2036 2269 0.459899 ACTGTCTGTCTGTGCGTTGA 59.54 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 122 8.588472 CACTCCCATGTAGACATATTGAAGATA 58.412 37.037 0.00 0.00 34.26 1.98
123 125 9.325248 TCCCATGTAGACATATTGAAGATATGA 57.675 33.333 11.75 0.00 36.23 2.15
185 187 7.880713 TGGGGTGAATAAATTTTTAGAAAAGGC 59.119 33.333 0.00 0.00 0.00 4.35
189 191 5.696260 ATAAATTTTTAGAAAAGGCGCGC 57.304 34.783 25.94 25.94 0.00 6.86
196 198 0.096454 AGAAAAGGCGCGCGATTTAC 59.904 50.000 37.18 21.00 0.00 2.01
197 199 1.185733 GAAAAGGCGCGCGATTTACG 61.186 55.000 37.18 4.04 45.66 3.18
198 200 2.571870 AAAAGGCGCGCGATTTACGG 62.572 55.000 37.18 1.14 42.83 4.02
199 201 3.993376 AAGGCGCGCGATTTACGGA 62.993 57.895 37.18 0.00 42.83 4.69
200 202 3.556549 GGCGCGCGATTTACGGAA 61.557 61.111 37.18 0.00 42.83 4.30
201 203 2.624264 GCGCGCGATTTACGGAAT 59.376 55.556 37.18 0.00 42.83 3.01
278 335 2.489329 CAAAACATCCACGCCATCTCTT 59.511 45.455 0.00 0.00 0.00 2.85
288 345 2.167693 ACGCCATCTCTTTCACCGATTA 59.832 45.455 0.00 0.00 0.00 1.75
291 348 4.494199 CGCCATCTCTTTCACCGATTAAAC 60.494 45.833 0.00 0.00 0.00 2.01
327 384 4.020662 GGTTTTTCAATGGGATAACAGGCA 60.021 41.667 0.00 0.00 0.00 4.75
361 418 3.544684 TGATGACATTGCCTCGCTAAAT 58.455 40.909 0.00 0.00 0.00 1.40
365 422 2.026641 ACATTGCCTCGCTAAATGCAT 58.973 42.857 0.00 0.00 43.06 3.96
459 516 2.334838 ACTCCAACGCGTAAGATCAAC 58.665 47.619 14.46 0.00 43.02 3.18
500 557 1.071605 GCGACTCATCCACACAAGTC 58.928 55.000 0.00 0.00 35.81 3.01
505 562 0.320683 TCATCCACACAAGTCCGCTG 60.321 55.000 0.00 0.00 0.00 5.18
524 581 5.280011 CCGCTGGACTATATATCCCTGTTTT 60.280 44.000 0.00 0.00 35.12 2.43
539 596 4.262164 CCCTGTTTTCCATCCTCTGTTTTG 60.262 45.833 0.00 0.00 0.00 2.44
544 601 0.890683 CCATCCTCTGTTTTGCACCC 59.109 55.000 0.00 0.00 0.00 4.61
555 612 2.359850 TGCACCCGCATTCCTGTC 60.360 61.111 0.00 0.00 45.36 3.51
556 613 3.499737 GCACCCGCATTCCTGTCG 61.500 66.667 0.00 0.00 38.36 4.35
557 614 3.499737 CACCCGCATTCCTGTCGC 61.500 66.667 0.00 0.00 0.00 5.19
558 615 4.015406 ACCCGCATTCCTGTCGCA 62.015 61.111 0.00 0.00 0.00 5.10
559 616 2.514592 CCCGCATTCCTGTCGCAT 60.515 61.111 0.00 0.00 0.00 4.73
562 619 1.013596 CCGCATTCCTGTCGCATTTA 58.986 50.000 0.00 0.00 0.00 1.40
563 620 1.268032 CCGCATTCCTGTCGCATTTAC 60.268 52.381 0.00 0.00 0.00 2.01
568 628 4.923281 GCATTCCTGTCGCATTTACTTTTT 59.077 37.500 0.00 0.00 0.00 1.94
576 636 5.998981 TGTCGCATTTACTTTTTCCCTCTTA 59.001 36.000 0.00 0.00 0.00 2.10
579 639 7.696872 GTCGCATTTACTTTTTCCCTCTTAATC 59.303 37.037 0.00 0.00 0.00 1.75
585 645 6.332735 ACTTTTTCCCTCTTAATCTGTTGC 57.667 37.500 0.00 0.00 0.00 4.17
588 648 5.964958 TTTCCCTCTTAATCTGTTGCAAG 57.035 39.130 0.00 0.00 0.00 4.01
596 656 5.301551 TCTTAATCTGTTGCAAGCCAAAGAA 59.698 36.000 0.00 0.00 34.68 2.52
597 657 3.655276 ATCTGTTGCAAGCCAAAGAAG 57.345 42.857 0.00 0.00 34.68 2.85
598 658 1.682854 TCTGTTGCAAGCCAAAGAAGG 59.317 47.619 0.00 0.00 34.68 3.46
613 673 4.648007 AGGAGAGCCCTTGACACA 57.352 55.556 0.00 0.00 44.85 3.72
615 675 1.003233 GGAGAGCCCTTGACACACC 60.003 63.158 0.00 0.00 0.00 4.16
624 684 2.104111 CCCTTGACACACCACACTCTTA 59.896 50.000 0.00 0.00 0.00 2.10
625 685 3.393800 CCTTGACACACCACACTCTTAG 58.606 50.000 0.00 0.00 0.00 2.18
630 726 4.634004 TGACACACCACACTCTTAGTTTTG 59.366 41.667 0.00 0.00 0.00 2.44
670 780 1.826921 CCTAGCCAGCCAGCCATTG 60.827 63.158 0.00 0.00 0.00 2.82
672 782 0.818445 CTAGCCAGCCAGCCATTGAG 60.818 60.000 0.00 0.00 0.00 3.02
677 787 0.179111 CAGCCAGCCATTGAGCAATG 60.179 55.000 14.63 14.63 45.77 2.82
711 821 6.677920 GCACTAGTAGTTTATTGCCACATTGG 60.678 42.308 0.00 0.00 41.55 3.16
735 845 2.928116 GGCATGAATGAGCAAGCTTTTC 59.072 45.455 0.00 0.00 33.36 2.29
736 846 3.368116 GGCATGAATGAGCAAGCTTTTCT 60.368 43.478 0.00 0.00 33.36 2.52
737 847 4.243270 GCATGAATGAGCAAGCTTTTCTT 58.757 39.130 0.00 9.28 34.78 2.52
738 848 4.689345 GCATGAATGAGCAAGCTTTTCTTT 59.311 37.500 0.00 2.46 31.27 2.52
739 849 5.163982 GCATGAATGAGCAAGCTTTTCTTTC 60.164 40.000 19.45 19.45 31.27 2.62
791 906 0.895100 GCCTGGCCTTGTTGACATCA 60.895 55.000 7.66 0.00 0.00 3.07
792 907 1.619654 CCTGGCCTTGTTGACATCAA 58.380 50.000 3.32 0.00 0.00 2.57
793 908 1.962807 CCTGGCCTTGTTGACATCAAA 59.037 47.619 3.32 0.00 37.63 2.69
794 909 2.029649 CCTGGCCTTGTTGACATCAAAG 60.030 50.000 3.32 0.00 37.63 2.77
800 923 3.803778 CCTTGTTGACATCAAAGCCAAAC 59.196 43.478 0.00 0.00 37.63 2.93
803 926 2.365293 GTTGACATCAAAGCCAAACCCT 59.635 45.455 0.00 0.00 37.63 4.34
804 927 2.238521 TGACATCAAAGCCAAACCCTC 58.761 47.619 0.00 0.00 0.00 4.30
835 958 1.223211 CCACCACTCCACACACACA 59.777 57.895 0.00 0.00 0.00 3.72
836 959 1.095228 CCACCACTCCACACACACAC 61.095 60.000 0.00 0.00 0.00 3.82
837 960 0.392327 CACCACTCCACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
838 961 0.392461 ACCACTCCACACACACACAC 60.392 55.000 0.00 0.00 0.00 3.82
839 962 0.392327 CCACTCCACACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
857 980 0.606401 CACACCACCACCACTCCATC 60.606 60.000 0.00 0.00 0.00 3.51
874 997 2.092699 CCATCCCTTCCTTCCTCTCAAC 60.093 54.545 0.00 0.00 0.00 3.18
875 998 1.657804 TCCCTTCCTTCCTCTCAACC 58.342 55.000 0.00 0.00 0.00 3.77
877 1000 1.362224 CCTTCCTTCCTCTCAACCCA 58.638 55.000 0.00 0.00 0.00 4.51
956 1099 2.360854 CCTTGTATTCTCCTCCCTCCCT 60.361 54.545 0.00 0.00 0.00 4.20
959 1102 0.868186 TATTCTCCTCCCTCCCTCCC 59.132 60.000 0.00 0.00 0.00 4.30
961 1104 3.039526 CTCCTCCCTCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
981 1124 0.784778 CTCCTTGTTTCTCACGTCGC 59.215 55.000 0.00 0.00 0.00 5.19
985 1128 0.599204 TTGTTTCTCACGTCGCTCCC 60.599 55.000 0.00 0.00 0.00 4.30
999 1142 3.521529 CTCCCACGCCCATCGATCC 62.522 68.421 0.00 0.00 41.67 3.36
1161 1325 4.131088 GGAGAGGTGGCGTCGTCC 62.131 72.222 0.00 0.00 0.00 4.79
1164 1328 4.131088 GAGGTGGCGTCGTCCTCC 62.131 72.222 16.85 15.79 41.09 4.30
1266 1430 3.270839 GCGCTCTGCCTCATGCTC 61.271 66.667 0.00 0.00 42.00 4.26
1341 1505 2.920912 TCGGTGGTGGTGAGGGAC 60.921 66.667 0.00 0.00 0.00 4.46
1437 1625 4.409218 TACGAGTGCCGGACGTGC 62.409 66.667 20.29 0.00 43.93 5.34
1556 1744 1.716826 GCGTCGTCCGAGGAGAAGAT 61.717 60.000 12.98 0.00 39.56 2.40
1558 1746 1.380524 GTCGTCCGAGGAGAAGATGA 58.619 55.000 0.00 0.00 0.00 2.92
1559 1747 1.743958 GTCGTCCGAGGAGAAGATGAA 59.256 52.381 0.00 0.00 0.00 2.57
1562 1750 1.754226 GTCCGAGGAGAAGATGAAGCT 59.246 52.381 0.00 0.00 0.00 3.74
1563 1751 1.753649 TCCGAGGAGAAGATGAAGCTG 59.246 52.381 0.00 0.00 0.00 4.24
1564 1752 1.569708 CGAGGAGAAGATGAAGCTGC 58.430 55.000 0.00 0.00 0.00 5.25
1565 1753 1.805871 CGAGGAGAAGATGAAGCTGCC 60.806 57.143 0.00 0.00 0.00 4.85
1566 1754 0.177604 AGGAGAAGATGAAGCTGCCG 59.822 55.000 0.00 0.00 0.00 5.69
1567 1755 1.435408 GGAGAAGATGAAGCTGCCGC 61.435 60.000 0.00 0.00 0.00 6.53
1568 1756 1.435408 GAGAAGATGAAGCTGCCGCC 61.435 60.000 0.00 0.00 36.60 6.13
1569 1757 2.817423 GAAGATGAAGCTGCCGCCG 61.817 63.158 0.00 0.00 36.60 6.46
1670 1870 4.426112 GCCGCCCAAGCAAGAAGC 62.426 66.667 0.00 0.00 46.19 3.86
1868 2089 2.292785 TGATCAGGAAGGAGAAGAGCCT 60.293 50.000 0.00 0.00 37.35 4.58
1869 2090 1.859302 TCAGGAAGGAGAAGAGCCTC 58.141 55.000 0.00 0.00 33.76 4.70
1939 2172 4.161295 CATCGCCGGGCTCCTTCA 62.161 66.667 18.34 0.00 0.00 3.02
1940 2173 4.162690 ATCGCCGGGCTCCTTCAC 62.163 66.667 18.34 0.00 0.00 3.18
1943 2176 4.699522 GCCGGGCTCCTTCACGTT 62.700 66.667 12.87 0.00 0.00 3.99
1944 2177 2.434359 CCGGGCTCCTTCACGTTC 60.434 66.667 0.00 0.00 0.00 3.95
1945 2178 2.809601 CGGGCTCCTTCACGTTCG 60.810 66.667 0.00 0.00 0.00 3.95
1967 2200 4.070552 GAAGGAGCGGCCGTCTGT 62.071 66.667 28.70 13.86 41.37 3.41
1968 2201 4.379243 AAGGAGCGGCCGTCTGTG 62.379 66.667 28.70 0.00 43.43 3.66
2036 2269 1.598130 GCCATTTCTAGGCGGCGAT 60.598 57.895 12.98 0.00 43.15 4.58
2038 2271 0.249868 CCATTTCTAGGCGGCGATCA 60.250 55.000 12.98 0.00 0.00 2.92
2040 2273 1.261619 CATTTCTAGGCGGCGATCAAC 59.738 52.381 12.98 0.00 0.00 3.18
2041 2274 0.804544 TTTCTAGGCGGCGATCAACG 60.805 55.000 12.98 1.98 45.66 4.10
2052 2291 0.710567 CGATCAACGCACAGACAGAC 59.289 55.000 0.00 0.00 34.51 3.51
2074 2313 6.439058 AGACAGTAATTAGCTCCTCTGTTTCT 59.561 38.462 0.00 0.00 36.49 2.52
2079 2318 8.325046 AGTAATTAGCTCCTCTGTTTCTCATTT 58.675 33.333 0.00 0.00 0.00 2.32
2080 2319 6.998968 ATTAGCTCCTCTGTTTCTCATTTG 57.001 37.500 0.00 0.00 0.00 2.32
2084 2323 4.083057 GCTCCTCTGTTTCTCATTTGTTCC 60.083 45.833 0.00 0.00 0.00 3.62
2090 2329 5.417266 TCTGTTTCTCATTTGTTCCACACAA 59.583 36.000 0.00 0.00 44.11 3.33
2091 2330 5.649557 TGTTTCTCATTTGTTCCACACAAG 58.350 37.500 0.00 0.00 46.37 3.16
2095 2341 5.132502 TCTCATTTGTTCCACACAAGACAT 58.867 37.500 0.00 0.00 46.37 3.06
2192 2477 9.829507 TGATGATTGGAAACTGTAAAATTTGTT 57.170 25.926 0.00 0.00 0.00 2.83
2194 2479 8.430801 TGATTGGAAACTGTAAAATTTGTTGG 57.569 30.769 0.00 0.00 0.00 3.77
2195 2480 7.497249 TGATTGGAAACTGTAAAATTTGTTGGG 59.503 33.333 0.00 0.00 0.00 4.12
2196 2481 6.301169 TGGAAACTGTAAAATTTGTTGGGT 57.699 33.333 0.00 0.00 0.00 4.51
2197 2482 6.712276 TGGAAACTGTAAAATTTGTTGGGTT 58.288 32.000 0.00 0.00 0.00 4.11
2198 2483 6.595716 TGGAAACTGTAAAATTTGTTGGGTTG 59.404 34.615 0.00 0.00 0.00 3.77
2199 2484 6.037720 GGAAACTGTAAAATTTGTTGGGTTGG 59.962 38.462 0.00 0.00 0.00 3.77
2200 2485 5.029807 ACTGTAAAATTTGTTGGGTTGGG 57.970 39.130 0.00 0.00 0.00 4.12
2201 2486 4.141597 ACTGTAAAATTTGTTGGGTTGGGG 60.142 41.667 0.00 0.00 0.00 4.96
2202 2487 3.136626 TGTAAAATTTGTTGGGTTGGGGG 59.863 43.478 0.00 0.00 0.00 5.40
2234 2519 7.536895 CAAATTGTTTGTCTGGAATTTGACA 57.463 32.000 0.00 5.99 43.68 3.58
2235 2520 8.145316 CAAATTGTTTGTCTGGAATTTGACAT 57.855 30.769 0.00 0.00 43.68 3.06
2236 2521 8.614346 CAAATTGTTTGTCTGGAATTTGACATT 58.386 29.630 0.00 1.31 43.68 2.71
2237 2522 7.718272 ATTGTTTGTCTGGAATTTGACATTG 57.282 32.000 9.56 0.00 41.93 2.82
2241 2526 7.920151 TGTTTGTCTGGAATTTGACATTGTTAG 59.080 33.333 9.56 0.00 41.93 2.34
2242 2527 7.581213 TTGTCTGGAATTTGACATTGTTAGT 57.419 32.000 9.56 0.00 41.93 2.24
2291 2576 7.092137 TGATTGATTGATTGATTCACTCACC 57.908 36.000 6.23 3.30 41.97 4.02
2299 2614 3.961480 TGATTCACTCACCGAGATTGT 57.039 42.857 0.00 0.00 33.32 2.71
2304 2619 4.801330 TCACTCACCGAGATTGTTATGT 57.199 40.909 0.00 0.00 33.32 2.29
2307 2622 4.690748 CACTCACCGAGATTGTTATGTTGT 59.309 41.667 0.00 0.00 33.32 3.32
2308 2623 4.690748 ACTCACCGAGATTGTTATGTTGTG 59.309 41.667 0.00 0.00 33.32 3.33
2310 2625 4.929211 TCACCGAGATTGTTATGTTGTGAG 59.071 41.667 0.00 0.00 0.00 3.51
2313 2628 4.154015 CCGAGATTGTTATGTTGTGAGCAA 59.846 41.667 0.00 0.00 0.00 3.91
2314 2629 5.319139 CGAGATTGTTATGTTGTGAGCAAG 58.681 41.667 0.00 0.00 34.94 4.01
2326 2648 6.205784 TGTTGTGAGCAAGTAATTAGTTTGC 58.794 36.000 19.64 19.64 45.64 3.68
2358 2680 8.616377 TGATTTTGAAATTGCAATTTTGTGTG 57.384 26.923 32.09 0.00 38.64 3.82
2359 2681 8.456471 TGATTTTGAAATTGCAATTTTGTGTGA 58.544 25.926 32.09 18.86 38.64 3.58
2363 2716 5.234757 TGAAATTGCAATTTTGTGTGAGAGC 59.765 36.000 32.09 18.36 38.64 4.09
2365 2718 1.001487 TGCAATTTTGTGTGAGAGCGG 60.001 47.619 0.00 0.00 0.00 5.52
2368 2721 1.523758 ATTTTGTGTGAGAGCGGGAC 58.476 50.000 0.00 0.00 0.00 4.46
2385 2738 2.232452 GGGACGATGATGATGAGGTAGG 59.768 54.545 0.00 0.00 0.00 3.18
2475 2834 0.810823 GTGGCAAGCAAGCAAGCAAA 60.811 50.000 10.15 0.00 36.85 3.68
2476 2835 0.810823 TGGCAAGCAAGCAAGCAAAC 60.811 50.000 10.15 0.00 36.85 2.93
2477 2836 0.810823 GGCAAGCAAGCAAGCAAACA 60.811 50.000 10.15 0.00 36.85 2.83
2478 2837 1.008329 GCAAGCAAGCAAGCAAACAA 58.992 45.000 3.19 0.00 36.85 2.83
2479 2838 1.397692 GCAAGCAAGCAAGCAAACAAA 59.602 42.857 3.19 0.00 36.85 2.83
2495 2854 2.932261 ACAAACAAACAGGGGAGAGAC 58.068 47.619 0.00 0.00 0.00 3.36
2521 2881 1.854280 TGGAAAAGGTGTGGGGTACTT 59.146 47.619 0.00 0.00 0.00 2.24
2524 2884 3.436035 GGAAAAGGTGTGGGGTACTTCTT 60.436 47.826 0.00 0.00 0.00 2.52
2526 2886 2.417719 AGGTGTGGGGTACTTCTTCT 57.582 50.000 0.00 0.00 0.00 2.85
2566 2926 1.468520 CATTGTGCTCACGTAAAGGGG 59.531 52.381 0.00 0.00 0.00 4.79
2603 2969 8.912988 TCTTCTTCCTCTTCATATTCTTCTCTC 58.087 37.037 0.00 0.00 0.00 3.20
2605 2971 9.928618 TTCTTCCTCTTCATATTCTTCTCTCTA 57.071 33.333 0.00 0.00 0.00 2.43
2609 2975 9.295825 TCCTCTTCATATTCTTCTCTCTATGTC 57.704 37.037 0.00 0.00 0.00 3.06
2616 2982 6.959639 ATTCTTCTCTCTATGTCTCTGTCC 57.040 41.667 0.00 0.00 0.00 4.02
2618 2984 3.586470 TCTCTCTATGTCTCTGTCCCC 57.414 52.381 0.00 0.00 0.00 4.81
2630 3000 0.549950 CTGTCCCCCTCTGCATCATT 59.450 55.000 0.00 0.00 0.00 2.57
2643 3013 2.482721 TGCATCATTAGCATCAGCATCG 59.517 45.455 0.00 0.00 45.49 3.84
2650 3020 0.885150 AGCATCAGCATCGGCATCAG 60.885 55.000 0.00 0.00 45.49 2.90
2653 3023 0.885150 ATCAGCATCGGCATCAGCAG 60.885 55.000 0.00 0.00 44.61 4.24
2656 3026 2.713770 CATCGGCATCAGCAGCAC 59.286 61.111 0.00 0.00 44.61 4.40
2707 3133 3.799432 TGTGTGGTTAGCTTGGGTATT 57.201 42.857 0.00 0.00 0.00 1.89
2761 3187 0.494095 AAGGAAGGACTCACTCCCCT 59.506 55.000 0.00 0.00 40.53 4.79
2823 3249 0.463204 ATGCTCCCACATCTCACTCG 59.537 55.000 0.00 0.00 0.00 4.18
2824 3250 1.142748 GCTCCCACATCTCACTCGG 59.857 63.158 0.00 0.00 0.00 4.63
2842 3272 1.583054 GGAACAATCCTCCGATTCCG 58.417 55.000 0.00 0.00 42.93 4.30
2843 3273 1.138266 GGAACAATCCTCCGATTCCGA 59.862 52.381 0.00 0.00 42.93 4.55
2844 3274 2.224305 GGAACAATCCTCCGATTCCGAT 60.224 50.000 0.00 0.00 42.93 4.18
2845 3275 2.821991 ACAATCCTCCGATTCCGATC 57.178 50.000 0.00 0.00 36.54 3.69
2846 3276 1.344763 ACAATCCTCCGATTCCGATCC 59.655 52.381 0.00 0.00 36.54 3.36
2847 3277 0.977395 AATCCTCCGATTCCGATCCC 59.023 55.000 0.00 0.00 33.15 3.85
2848 3278 1.251527 ATCCTCCGATTCCGATCCCG 61.252 60.000 0.00 0.00 38.22 5.14
2849 3279 2.049063 CTCCGATTCCGATCCCGC 60.049 66.667 0.00 0.00 38.22 6.13
2850 3280 2.835895 TCCGATTCCGATCCCGCA 60.836 61.111 0.00 0.00 38.22 5.69
2851 3281 2.108157 CCGATTCCGATCCCGCAA 59.892 61.111 0.00 0.00 38.22 4.85
2852 3282 1.522806 CCGATTCCGATCCCGCAAA 60.523 57.895 0.00 0.00 38.22 3.68
2853 3283 0.884704 CCGATTCCGATCCCGCAAAT 60.885 55.000 0.00 0.00 38.22 2.32
2854 3284 0.944386 CGATTCCGATCCCGCAAATT 59.056 50.000 0.00 0.00 38.22 1.82
2855 3285 2.139917 CGATTCCGATCCCGCAAATTA 58.860 47.619 0.00 0.00 38.22 1.40
2863 3293 0.889306 TCCCGCAAATTAAAACCCCG 59.111 50.000 0.00 0.00 0.00 5.73
2867 3297 3.130693 CCCGCAAATTAAAACCCCGAATA 59.869 43.478 0.00 0.00 0.00 1.75
2868 3298 4.202172 CCCGCAAATTAAAACCCCGAATAT 60.202 41.667 0.00 0.00 0.00 1.28
2869 3299 5.009811 CCCGCAAATTAAAACCCCGAATATA 59.990 40.000 0.00 0.00 0.00 0.86
2870 3300 6.146898 CCGCAAATTAAAACCCCGAATATAG 58.853 40.000 0.00 0.00 0.00 1.31
2871 3301 5.627780 CGCAAATTAAAACCCCGAATATAGC 59.372 40.000 0.00 0.00 0.00 2.97
2872 3302 6.508777 GCAAATTAAAACCCCGAATATAGCA 58.491 36.000 0.00 0.00 0.00 3.49
2873 3303 6.419710 GCAAATTAAAACCCCGAATATAGCAC 59.580 38.462 0.00 0.00 0.00 4.40
2874 3304 6.644248 AATTAAAACCCCGAATATAGCACC 57.356 37.500 0.00 0.00 0.00 5.01
2875 3305 3.655615 AAAACCCCGAATATAGCACCA 57.344 42.857 0.00 0.00 0.00 4.17
2876 3306 3.876309 AAACCCCGAATATAGCACCAT 57.124 42.857 0.00 0.00 0.00 3.55
2877 3307 3.876309 AACCCCGAATATAGCACCATT 57.124 42.857 0.00 0.00 0.00 3.16
2878 3308 3.418684 ACCCCGAATATAGCACCATTC 57.581 47.619 0.00 0.00 0.00 2.67
2898 3328 3.384668 TCGAAAGAATCTCGATGATGCC 58.615 45.455 0.00 0.00 40.25 4.40
2899 3329 2.154580 CGAAAGAATCTCGATGATGCCG 59.845 50.000 0.00 0.00 38.61 5.69
2900 3330 2.160822 AAGAATCTCGATGATGCCGG 57.839 50.000 0.00 0.00 35.21 6.13
2901 3331 1.332195 AGAATCTCGATGATGCCGGA 58.668 50.000 5.05 0.00 35.21 5.14
2902 3332 1.000283 AGAATCTCGATGATGCCGGAC 60.000 52.381 5.05 0.00 35.21 4.79
2903 3333 0.034059 AATCTCGATGATGCCGGACC 59.966 55.000 5.05 0.00 35.21 4.46
2904 3334 2.147315 ATCTCGATGATGCCGGACCG 62.147 60.000 5.05 6.99 33.43 4.79
2905 3335 4.585526 TCGATGATGCCGGACCGC 62.586 66.667 5.05 4.77 0.00 5.68
2906 3336 4.889856 CGATGATGCCGGACCGCA 62.890 66.667 5.05 10.96 44.35 5.69
2907 3337 2.513666 GATGATGCCGGACCGCAA 60.514 61.111 5.05 0.00 43.24 4.85
2908 3338 2.823829 GATGATGCCGGACCGCAAC 61.824 63.158 5.05 9.74 43.24 4.17
2909 3339 3.329542 ATGATGCCGGACCGCAACT 62.330 57.895 5.05 0.00 43.24 3.16
2910 3340 3.195698 GATGCCGGACCGCAACTC 61.196 66.667 5.05 2.54 43.24 3.01
2911 3341 3.665675 GATGCCGGACCGCAACTCT 62.666 63.158 5.05 0.00 43.24 3.24
2912 3342 2.292794 GATGCCGGACCGCAACTCTA 62.293 60.000 5.05 0.00 43.24 2.43
2913 3343 1.686325 ATGCCGGACCGCAACTCTAT 61.686 55.000 5.05 0.00 43.24 1.98
2914 3344 1.153429 GCCGGACCGCAACTCTATT 60.153 57.895 5.05 0.00 0.00 1.73
2915 3345 0.743345 GCCGGACCGCAACTCTATTT 60.743 55.000 5.05 0.00 0.00 1.40
2916 3346 1.006832 CCGGACCGCAACTCTATTTG 58.993 55.000 8.86 0.00 0.00 2.32
2917 3347 1.006832 CGGACCGCAACTCTATTTGG 58.993 55.000 0.00 0.00 0.00 3.28
2918 3348 1.674817 CGGACCGCAACTCTATTTGGT 60.675 52.381 0.00 0.00 0.00 3.67
2919 3349 2.007608 GGACCGCAACTCTATTTGGTC 58.992 52.381 0.63 0.63 43.98 4.02
2920 3350 2.354805 GGACCGCAACTCTATTTGGTCT 60.355 50.000 8.88 0.00 44.12 3.85
2921 3351 2.673368 GACCGCAACTCTATTTGGTCTG 59.327 50.000 2.09 0.00 42.00 3.51
2922 3352 1.398390 CCGCAACTCTATTTGGTCTGC 59.602 52.381 0.00 0.00 0.00 4.26
2923 3353 1.398390 CGCAACTCTATTTGGTCTGCC 59.602 52.381 0.00 0.00 0.00 4.85
2924 3354 1.398390 GCAACTCTATTTGGTCTGCCG 59.602 52.381 0.00 0.00 37.67 5.69
2925 3355 1.398390 CAACTCTATTTGGTCTGCCGC 59.602 52.381 0.00 0.00 37.67 6.53
2926 3356 0.107654 ACTCTATTTGGTCTGCCGCC 60.108 55.000 0.00 0.00 37.67 6.13
2927 3357 0.179000 CTCTATTTGGTCTGCCGCCT 59.821 55.000 0.00 0.00 37.67 5.52
2928 3358 0.618458 TCTATTTGGTCTGCCGCCTT 59.382 50.000 0.00 0.00 37.67 4.35
2929 3359 1.004277 TCTATTTGGTCTGCCGCCTTT 59.996 47.619 0.00 0.00 37.67 3.11
2930 3360 1.133025 CTATTTGGTCTGCCGCCTTTG 59.867 52.381 0.00 0.00 37.67 2.77
2931 3361 2.158561 ATTTGGTCTGCCGCCTTTGC 62.159 55.000 0.00 0.00 37.67 3.68
2932 3362 4.577677 TGGTCTGCCGCCTTTGCA 62.578 61.111 0.00 0.00 37.32 4.08
2933 3363 3.064324 GGTCTGCCGCCTTTGCAT 61.064 61.111 0.00 0.00 38.22 3.96
2934 3364 2.486966 GTCTGCCGCCTTTGCATC 59.513 61.111 0.00 0.00 38.22 3.91
2935 3365 3.126879 TCTGCCGCCTTTGCATCG 61.127 61.111 0.00 0.00 38.22 3.84
2936 3366 3.126879 CTGCCGCCTTTGCATCGA 61.127 61.111 0.00 0.00 38.22 3.59
2937 3367 2.438254 TGCCGCCTTTGCATCGAT 60.438 55.556 0.00 0.00 37.32 3.59
2938 3368 2.329339 GCCGCCTTTGCATCGATC 59.671 61.111 0.00 0.00 37.32 3.69
2939 3369 2.628106 CCGCCTTTGCATCGATCG 59.372 61.111 9.36 9.36 37.32 3.69
2940 3370 1.882625 CCGCCTTTGCATCGATCGA 60.883 57.895 21.86 21.86 37.32 3.59
2941 3371 1.224069 CCGCCTTTGCATCGATCGAT 61.224 55.000 24.60 24.60 37.32 3.59
2950 3380 2.640375 CATCGATCGATGCACACAAG 57.360 50.000 37.03 17.22 44.27 3.16
2951 3381 2.195922 CATCGATCGATGCACACAAGA 58.804 47.619 37.03 6.18 44.27 3.02
2952 3382 2.584492 TCGATCGATGCACACAAGAT 57.416 45.000 15.15 0.00 32.19 2.40
2953 3383 2.463876 TCGATCGATGCACACAAGATC 58.536 47.619 15.15 0.00 39.07 2.75
2954 3384 2.159254 TCGATCGATGCACACAAGATCA 60.159 45.455 15.15 0.00 40.84 2.92
2955 3385 2.604462 CGATCGATGCACACAAGATCAA 59.396 45.455 10.26 0.00 40.84 2.57
2956 3386 3.542875 CGATCGATGCACACAAGATCAAC 60.543 47.826 10.26 0.00 40.84 3.18
2957 3387 2.076100 TCGATGCACACAAGATCAACC 58.924 47.619 0.00 0.00 0.00 3.77
2958 3388 2.079158 CGATGCACACAAGATCAACCT 58.921 47.619 0.00 0.00 0.00 3.50
2959 3389 2.094894 CGATGCACACAAGATCAACCTC 59.905 50.000 0.00 0.00 0.00 3.85
2960 3390 1.896220 TGCACACAAGATCAACCTCC 58.104 50.000 0.00 0.00 0.00 4.30
2961 3391 0.798776 GCACACAAGATCAACCTCCG 59.201 55.000 0.00 0.00 0.00 4.63
2962 3392 1.608025 GCACACAAGATCAACCTCCGA 60.608 52.381 0.00 0.00 0.00 4.55
2963 3393 2.936993 GCACACAAGATCAACCTCCGAT 60.937 50.000 0.00 0.00 0.00 4.18
2964 3394 3.338249 CACACAAGATCAACCTCCGATT 58.662 45.455 0.00 0.00 0.00 3.34
2965 3395 3.125829 CACACAAGATCAACCTCCGATTG 59.874 47.826 0.00 0.00 0.00 2.67
2966 3396 2.679837 CACAAGATCAACCTCCGATTGG 59.320 50.000 0.00 0.00 0.00 3.16
2967 3397 2.305927 ACAAGATCAACCTCCGATTGGT 59.694 45.455 0.00 0.00 39.91 3.67
2972 3402 3.226884 AACCTCCGATTGGTTGTCG 57.773 52.632 0.00 0.00 45.10 4.35
2973 3403 0.953960 AACCTCCGATTGGTTGTCGC 60.954 55.000 0.00 0.00 45.10 5.19
2974 3404 2.452813 CCTCCGATTGGTTGTCGCG 61.453 63.158 0.00 0.00 37.75 5.87
2975 3405 2.433491 TCCGATTGGTTGTCGCGG 60.433 61.111 6.13 0.00 43.11 6.46
2976 3406 4.160635 CCGATTGGTTGTCGCGGC 62.161 66.667 2.29 2.29 37.75 6.53
2977 3407 3.118454 CGATTGGTTGTCGCGGCT 61.118 61.111 13.81 0.00 31.85 5.52
2978 3408 1.807981 CGATTGGTTGTCGCGGCTA 60.808 57.895 13.81 0.00 31.85 3.93
2979 3409 1.355796 CGATTGGTTGTCGCGGCTAA 61.356 55.000 13.81 1.26 31.85 3.09
2980 3410 1.014352 GATTGGTTGTCGCGGCTAAT 58.986 50.000 13.81 7.51 0.00 1.73
2981 3411 2.206750 GATTGGTTGTCGCGGCTAATA 58.793 47.619 13.81 0.00 0.00 0.98
2982 3412 1.361793 TTGGTTGTCGCGGCTAATAC 58.638 50.000 13.81 4.75 0.00 1.89
2983 3413 0.802994 TGGTTGTCGCGGCTAATACG 60.803 55.000 13.81 0.00 0.00 3.06
2984 3414 1.485032 GGTTGTCGCGGCTAATACGG 61.485 60.000 13.81 0.00 0.00 4.02
2985 3415 0.526096 GTTGTCGCGGCTAATACGGA 60.526 55.000 13.81 0.00 0.00 4.69
2986 3416 0.248743 TTGTCGCGGCTAATACGGAG 60.249 55.000 13.81 0.00 0.00 4.63
2988 3418 0.659711 GTCGCGGCTAATACGGAGTC 60.660 60.000 1.90 0.00 43.93 3.36
2989 3419 1.724929 CGCGGCTAATACGGAGTCG 60.725 63.158 0.00 0.00 43.93 4.18
2990 3420 4.223514 CGGCTAATACGGAGTCGC 57.776 61.111 0.00 0.00 43.93 5.19
2991 3421 1.724929 CGGCTAATACGGAGTCGCG 60.725 63.158 0.00 0.00 43.93 5.87
2992 3422 1.371389 GGCTAATACGGAGTCGCGG 60.371 63.158 6.13 0.00 43.93 6.46
2993 3423 2.015090 GCTAATACGGAGTCGCGGC 61.015 63.158 0.21 0.21 43.93 6.53
2994 3424 1.724929 CTAATACGGAGTCGCGGCG 60.725 63.158 17.70 17.70 43.93 6.46
2995 3425 2.384391 CTAATACGGAGTCGCGGCGT 62.384 60.000 22.90 3.24 43.93 5.68
2996 3426 2.651367 TAATACGGAGTCGCGGCGTG 62.651 60.000 22.90 15.42 43.93 5.34
3006 3436 3.782244 GCGGCGTGTTGCTCTCTG 61.782 66.667 9.37 0.00 45.43 3.35
3007 3437 3.114616 CGGCGTGTTGCTCTCTGG 61.115 66.667 0.00 0.00 45.43 3.86
3008 3438 2.743928 GGCGTGTTGCTCTCTGGG 60.744 66.667 0.00 0.00 45.43 4.45
3009 3439 2.743928 GCGTGTTGCTCTCTGGGG 60.744 66.667 0.00 0.00 41.73 4.96
3010 3440 2.743718 CGTGTTGCTCTCTGGGGT 59.256 61.111 0.00 0.00 0.00 4.95
3011 3441 1.374758 CGTGTTGCTCTCTGGGGTC 60.375 63.158 0.00 0.00 0.00 4.46
3012 3442 1.754745 GTGTTGCTCTCTGGGGTCA 59.245 57.895 0.00 0.00 0.00 4.02
3013 3443 0.326264 GTGTTGCTCTCTGGGGTCAT 59.674 55.000 0.00 0.00 0.00 3.06
3014 3444 0.325933 TGTTGCTCTCTGGGGTCATG 59.674 55.000 0.00 0.00 0.00 3.07
3015 3445 0.393537 GTTGCTCTCTGGGGTCATGG 60.394 60.000 0.00 0.00 0.00 3.66
3016 3446 1.565390 TTGCTCTCTGGGGTCATGGG 61.565 60.000 0.00 0.00 0.00 4.00
3017 3447 2.914289 CTCTCTGGGGTCATGGGC 59.086 66.667 0.00 0.00 0.00 5.36
3018 3448 1.692042 CTCTCTGGGGTCATGGGCT 60.692 63.158 0.00 0.00 0.00 5.19
3019 3449 1.229951 TCTCTGGGGTCATGGGCTT 60.230 57.895 0.00 0.00 0.00 4.35
3020 3450 1.077212 CTCTGGGGTCATGGGCTTG 60.077 63.158 0.00 0.00 0.00 4.01
3021 3451 1.541118 TCTGGGGTCATGGGCTTGA 60.541 57.895 0.00 0.00 0.00 3.02
3022 3452 0.920763 TCTGGGGTCATGGGCTTGAT 60.921 55.000 0.00 0.00 0.00 2.57
3023 3453 0.754217 CTGGGGTCATGGGCTTGATG 60.754 60.000 0.00 0.00 0.00 3.07
3024 3454 2.129785 GGGGTCATGGGCTTGATGC 61.130 63.158 0.00 0.00 41.94 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.183360 TGTTTGTGATCAACAGGTGTAACTTC 60.183 38.462 0.00 0.00 40.74 3.01
1 2 5.650266 TGTTTGTGATCAACAGGTGTAACTT 59.350 36.000 0.00 0.00 40.74 2.66
2 3 5.189928 TGTTTGTGATCAACAGGTGTAACT 58.810 37.500 0.00 0.00 40.74 2.24
3 4 5.493133 TGTTTGTGATCAACAGGTGTAAC 57.507 39.130 0.00 0.74 40.74 2.50
120 122 8.336235 TCATTAGAACCTGGAATTTTACCTCAT 58.664 33.333 0.00 0.00 0.00 2.90
134 136 6.322201 ACAAAGGGCATAATCATTAGAACCTG 59.678 38.462 0.00 0.00 0.00 4.00
185 187 0.650476 CACATTCCGTAAATCGCGCG 60.650 55.000 26.76 26.76 38.35 6.86
189 191 7.057149 ACTTTCTTACACATTCCGTAAATCG 57.943 36.000 0.00 0.00 39.52 3.34
196 198 4.324267 AGGGAACTTTCTTACACATTCCG 58.676 43.478 0.00 0.00 37.44 4.30
278 335 1.793258 TTCCGCGTTTAATCGGTGAA 58.207 45.000 4.92 0.00 45.44 3.18
288 345 1.381165 AACCACTGCTTTCCGCGTTT 61.381 50.000 4.92 0.00 43.27 3.60
291 348 0.248866 AAAAACCACTGCTTTCCGCG 60.249 50.000 0.00 0.00 43.27 6.46
306 363 4.222588 CCTGCCTGTTATCCCATTGAAAAA 59.777 41.667 0.00 0.00 0.00 1.94
327 384 1.623311 TGTCATCATCCGTGTGTTCCT 59.377 47.619 0.00 0.00 0.00 3.36
404 461 3.436704 GCATAAAGCTAATATGCCAGCGA 59.563 43.478 24.01 0.00 46.31 4.93
417 474 5.711976 AGTAAACCATGTCTTGCATAAAGCT 59.288 36.000 0.00 0.00 45.94 3.74
434 491 2.676076 TCTTACGCGTTGGAGTAAACC 58.324 47.619 20.78 0.00 37.85 3.27
500 557 3.366396 ACAGGGATATATAGTCCAGCGG 58.634 50.000 8.69 0.00 37.49 5.52
505 562 7.182930 AGGATGGAAAACAGGGATATATAGTCC 59.817 40.741 0.00 0.00 34.92 3.85
508 565 8.263640 CAGAGGATGGAAAACAGGGATATATAG 58.736 40.741 0.00 0.00 0.00 1.31
512 569 4.728860 ACAGAGGATGGAAAACAGGGATAT 59.271 41.667 0.00 0.00 0.00 1.63
514 571 2.922283 ACAGAGGATGGAAAACAGGGAT 59.078 45.455 0.00 0.00 0.00 3.85
519 576 3.703556 TGCAAAACAGAGGATGGAAAACA 59.296 39.130 0.00 0.00 0.00 2.83
524 581 1.547675 GGGTGCAAAACAGAGGATGGA 60.548 52.381 0.00 0.00 0.00 3.41
539 596 3.499737 CGACAGGAATGCGGGTGC 61.500 66.667 0.00 0.00 43.20 5.01
544 601 1.665679 AGTAAATGCGACAGGAATGCG 59.334 47.619 0.00 0.00 0.00 4.73
551 608 4.455877 AGAGGGAAAAAGTAAATGCGACAG 59.544 41.667 0.00 0.00 0.00 3.51
555 612 7.698130 CAGATTAAGAGGGAAAAAGTAAATGCG 59.302 37.037 0.00 0.00 0.00 4.73
556 613 8.523658 ACAGATTAAGAGGGAAAAAGTAAATGC 58.476 33.333 0.00 0.00 0.00 3.56
559 616 8.357402 GCAACAGATTAAGAGGGAAAAAGTAAA 58.643 33.333 0.00 0.00 0.00 2.01
562 619 5.833131 TGCAACAGATTAAGAGGGAAAAAGT 59.167 36.000 0.00 0.00 0.00 2.66
563 620 6.331369 TGCAACAGATTAAGAGGGAAAAAG 57.669 37.500 0.00 0.00 0.00 2.27
568 628 3.347216 GCTTGCAACAGATTAAGAGGGA 58.653 45.455 0.00 0.00 0.00 4.20
576 636 3.243975 CCTTCTTTGGCTTGCAACAGATT 60.244 43.478 0.00 0.00 0.00 2.40
579 639 1.682854 TCCTTCTTTGGCTTGCAACAG 59.317 47.619 0.00 0.00 0.00 3.16
585 645 1.172175 GGCTCTCCTTCTTTGGCTTG 58.828 55.000 0.00 0.00 0.00 4.01
588 648 1.688211 AGGGCTCTCCTTCTTTGGC 59.312 57.895 0.00 0.00 45.47 4.52
597 657 1.003233 GGTGTGTCAAGGGCTCTCC 60.003 63.158 0.00 0.00 0.00 3.71
598 658 0.603975 GTGGTGTGTCAAGGGCTCTC 60.604 60.000 0.00 0.00 0.00 3.20
613 673 3.616219 TGTGCAAAACTAAGAGTGTGGT 58.384 40.909 0.00 0.00 0.00 4.16
615 675 5.235305 ACTTGTGCAAAACTAAGAGTGTG 57.765 39.130 0.00 0.00 0.00 3.82
624 684 3.971245 TTTTGGGACTTGTGCAAAACT 57.029 38.095 0.00 0.00 0.00 2.66
625 685 5.582665 TGTTATTTTGGGACTTGTGCAAAAC 59.417 36.000 0.00 0.00 0.00 2.43
630 726 3.860754 GCCTGTTATTTTGGGACTTGTGC 60.861 47.826 0.00 0.00 0.00 4.57
670 780 1.743958 AGTGCTCATTGCTCATTGCTC 59.256 47.619 0.00 0.00 43.37 4.26
672 782 2.681848 ACTAGTGCTCATTGCTCATTGC 59.318 45.455 0.00 0.00 43.37 3.56
677 787 7.625553 CAATAAACTACTAGTGCTCATTGCTC 58.374 38.462 5.39 0.00 43.37 4.26
679 789 6.195165 GCAATAAACTACTAGTGCTCATTGC 58.805 40.000 19.21 19.21 39.26 3.56
711 821 0.527817 GCTTGCTCATTCATGCCTGC 60.528 55.000 0.00 0.00 32.82 4.85
719 829 6.922407 AGAAAGAAAGAAAAGCTTGCTCATTC 59.078 34.615 14.45 14.45 41.91 2.67
735 845 7.700022 AAGAAGGATTGATGGAGAAAGAAAG 57.300 36.000 0.00 0.00 0.00 2.62
736 846 7.337942 GCTAAGAAGGATTGATGGAGAAAGAAA 59.662 37.037 0.00 0.00 0.00 2.52
737 847 6.825721 GCTAAGAAGGATTGATGGAGAAAGAA 59.174 38.462 0.00 0.00 0.00 2.52
738 848 6.157645 AGCTAAGAAGGATTGATGGAGAAAGA 59.842 38.462 0.00 0.00 0.00 2.52
739 849 6.260493 CAGCTAAGAAGGATTGATGGAGAAAG 59.740 42.308 0.00 0.00 0.00 2.62
791 906 7.553504 AATAATAAAGTGAGGGTTTGGCTTT 57.446 32.000 0.00 0.00 34.35 3.51
792 907 7.123697 GGTAATAATAAAGTGAGGGTTTGGCTT 59.876 37.037 0.00 0.00 0.00 4.35
793 908 6.605995 GGTAATAATAAAGTGAGGGTTTGGCT 59.394 38.462 0.00 0.00 0.00 4.75
794 909 6.378848 TGGTAATAATAAAGTGAGGGTTTGGC 59.621 38.462 0.00 0.00 0.00 4.52
800 923 6.659824 AGTGGTGGTAATAATAAAGTGAGGG 58.340 40.000 0.00 0.00 0.00 4.30
803 926 7.107542 GTGGAGTGGTGGTAATAATAAAGTGA 58.892 38.462 0.00 0.00 0.00 3.41
804 927 6.882140 TGTGGAGTGGTGGTAATAATAAAGTG 59.118 38.462 0.00 0.00 0.00 3.16
835 958 1.223487 GAGTGGTGGTGGTGTGTGT 59.777 57.895 0.00 0.00 0.00 3.72
836 959 1.525995 GGAGTGGTGGTGGTGTGTG 60.526 63.158 0.00 0.00 0.00 3.82
837 960 1.352622 ATGGAGTGGTGGTGGTGTGT 61.353 55.000 0.00 0.00 0.00 3.72
838 961 0.606401 GATGGAGTGGTGGTGGTGTG 60.606 60.000 0.00 0.00 0.00 3.82
839 962 1.761174 GATGGAGTGGTGGTGGTGT 59.239 57.895 0.00 0.00 0.00 4.16
857 980 0.621082 GGGTTGAGAGGAAGGAAGGG 59.379 60.000 0.00 0.00 0.00 3.95
874 997 1.134007 TGCTTGCATATGGAGAGTGGG 60.134 52.381 4.56 0.00 0.00 4.61
875 998 2.336945 TGCTTGCATATGGAGAGTGG 57.663 50.000 4.56 0.00 0.00 4.00
877 1000 3.960571 AGTTTGCTTGCATATGGAGAGT 58.039 40.909 4.56 0.00 0.00 3.24
956 1099 1.978580 GTGAGAAACAAGGAGAGGGGA 59.021 52.381 0.00 0.00 0.00 4.81
959 1102 2.678324 GACGTGAGAAACAAGGAGAGG 58.322 52.381 0.00 0.00 32.54 3.69
961 1104 1.602165 GCGACGTGAGAAACAAGGAGA 60.602 52.381 0.00 0.00 32.54 3.71
981 1124 2.029666 GATCGATGGGCGTGGGAG 59.970 66.667 0.54 0.00 41.80 4.30
985 1128 1.962822 CCATGGATCGATGGGCGTG 60.963 63.158 24.98 4.50 39.53 5.34
991 1134 0.837691 TCCTCCCCCATGGATCGATG 60.838 60.000 15.22 10.54 44.07 3.84
1047 1196 4.365505 TTGACGACGATGGCCGCA 62.366 61.111 0.00 0.00 43.32 5.69
1048 1197 3.554692 CTTGACGACGATGGCCGC 61.555 66.667 0.00 0.00 43.32 6.53
1306 1470 3.203412 CGAGGAGGAGGACGACGG 61.203 72.222 0.00 0.00 0.00 4.79
1317 1481 2.989824 ACCACCACCGACGAGGAG 60.990 66.667 12.38 5.28 45.00 3.69
1320 1484 2.258591 CTCACCACCACCGACGAG 59.741 66.667 0.00 0.00 0.00 4.18
1363 1551 3.330720 CCGGAACTTGCCCTCCCT 61.331 66.667 0.00 0.00 0.00 4.20
1537 1725 1.716826 ATCTTCTCCTCGGACGACGC 61.717 60.000 0.00 0.00 43.86 5.19
1570 1758 4.521062 CTTCTCCTCGGCGGCCTG 62.521 72.222 18.34 10.86 0.00 4.85
1571 1759 4.761058 TCTTCTCCTCGGCGGCCT 62.761 66.667 18.34 0.00 0.00 5.19
1572 1760 4.516195 GTCTTCTCCTCGGCGGCC 62.516 72.222 9.54 9.54 0.00 6.13
1573 1761 4.856607 CGTCTTCTCCTCGGCGGC 62.857 72.222 7.21 0.00 0.00 6.53
1617 1817 4.451150 GCCAGCACCGTCCGATCA 62.451 66.667 0.00 0.00 0.00 2.92
1682 1888 4.077188 GCTGCTTGGACGACACGC 62.077 66.667 0.00 0.00 44.02 5.34
1868 2089 1.198713 GTTGAGATCCAGCTCCAGGA 58.801 55.000 0.00 0.00 39.97 3.86
1869 2090 0.907486 TGTTGAGATCCAGCTCCAGG 59.093 55.000 0.00 0.00 33.95 4.45
1921 2154 4.162690 GAAGGAGCCCGGCGATGT 62.163 66.667 9.30 0.00 0.00 3.06
1929 2162 3.119096 GCGAACGTGAAGGAGCCC 61.119 66.667 0.00 0.00 0.00 5.19
1930 2163 3.119096 GGCGAACGTGAAGGAGCC 61.119 66.667 0.00 0.00 37.61 4.70
1931 2164 3.479269 CGGCGAACGTGAAGGAGC 61.479 66.667 0.00 0.00 37.93 4.70
2024 2257 2.411701 CGTTGATCGCCGCCTAGA 59.588 61.111 0.00 0.00 0.00 2.43
2034 2267 1.723542 CTGTCTGTCTGTGCGTTGATC 59.276 52.381 0.00 0.00 0.00 2.92
2036 2269 0.459899 ACTGTCTGTCTGTGCGTTGA 59.540 50.000 0.00 0.00 0.00 3.18
2038 2271 2.882927 TTACTGTCTGTCTGTGCGTT 57.117 45.000 0.00 0.00 0.00 4.84
2040 2273 3.304559 GCTAATTACTGTCTGTCTGTGCG 59.695 47.826 0.00 0.00 0.00 5.34
2041 2274 4.499183 AGCTAATTACTGTCTGTCTGTGC 58.501 43.478 0.00 0.00 0.00 4.57
2042 2275 5.105554 AGGAGCTAATTACTGTCTGTCTGTG 60.106 44.000 0.00 0.00 0.00 3.66
2043 2276 5.020132 AGGAGCTAATTACTGTCTGTCTGT 58.980 41.667 0.00 0.00 0.00 3.41
2044 2277 5.359576 AGAGGAGCTAATTACTGTCTGTCTG 59.640 44.000 0.00 0.00 0.00 3.51
2045 2278 5.359576 CAGAGGAGCTAATTACTGTCTGTCT 59.640 44.000 0.00 0.00 0.00 3.41
2046 2279 5.126384 ACAGAGGAGCTAATTACTGTCTGTC 59.874 44.000 15.28 3.60 39.27 3.51
2052 2291 6.634805 TGAGAAACAGAGGAGCTAATTACTG 58.365 40.000 0.00 0.00 0.00 2.74
2080 2319 6.985188 ATGTGTATATGTCTTGTGTGGAAC 57.015 37.500 0.00 0.00 37.35 3.62
2142 2427 9.361315 TCATCAATGATCAATCAATTTGAACAC 57.639 29.630 10.35 0.00 46.11 3.32
2160 2445 9.642327 TTTTACAGTTTCCAATCATCATCAATG 57.358 29.630 0.00 0.00 36.65 2.82
2210 2495 7.536895 TGTCAAATTCCAGACAAACAATTTG 57.463 32.000 8.90 8.90 43.22 2.32
2211 2496 8.614346 CAATGTCAAATTCCAGACAAACAATTT 58.386 29.630 10.97 0.00 46.62 1.82
2212 2497 7.769970 ACAATGTCAAATTCCAGACAAACAATT 59.230 29.630 10.97 1.12 46.62 2.32
2213 2498 7.274447 ACAATGTCAAATTCCAGACAAACAAT 58.726 30.769 10.97 0.00 46.62 2.71
2214 2499 6.638610 ACAATGTCAAATTCCAGACAAACAA 58.361 32.000 10.97 0.00 46.62 2.83
2215 2500 6.219417 ACAATGTCAAATTCCAGACAAACA 57.781 33.333 10.97 0.00 46.62 2.83
2216 2501 7.920682 ACTAACAATGTCAAATTCCAGACAAAC 59.079 33.333 10.97 0.00 46.62 2.93
2217 2502 8.006298 ACTAACAATGTCAAATTCCAGACAAA 57.994 30.769 10.97 0.00 46.62 2.83
2218 2503 7.581213 ACTAACAATGTCAAATTCCAGACAA 57.419 32.000 10.97 0.00 46.62 3.18
2220 2505 8.730680 ACATACTAACAATGTCAAATTCCAGAC 58.269 33.333 0.00 0.00 32.02 3.51
2221 2506 8.729756 CACATACTAACAATGTCAAATTCCAGA 58.270 33.333 0.00 0.00 35.39 3.86
2222 2507 8.729756 TCACATACTAACAATGTCAAATTCCAG 58.270 33.333 0.00 0.00 35.39 3.86
2223 2508 8.628630 TCACATACTAACAATGTCAAATTCCA 57.371 30.769 0.00 0.00 35.39 3.53
2276 2561 4.872691 ACAATCTCGGTGAGTGAATCAATC 59.127 41.667 13.57 3.48 42.75 2.67
2291 2576 4.926860 TGCTCACAACATAACAATCTCG 57.073 40.909 0.00 0.00 0.00 4.04
2299 2614 9.891828 CAAACTAATTACTTGCTCACAACATAA 57.108 29.630 0.00 0.00 0.00 1.90
2304 2619 6.384258 TGCAAACTAATTACTTGCTCACAA 57.616 33.333 20.36 5.37 44.57 3.33
2343 2665 3.311106 CGCTCTCACACAAAATTGCAAT 58.689 40.909 5.99 5.99 0.00 3.56
2345 2667 1.001487 CCGCTCTCACACAAAATTGCA 60.001 47.619 0.00 0.00 0.00 4.08
2346 2668 1.666888 CCCGCTCTCACACAAAATTGC 60.667 52.381 0.00 0.00 0.00 3.56
2347 2669 1.879380 TCCCGCTCTCACACAAAATTG 59.121 47.619 0.00 0.00 0.00 2.32
2348 2670 1.880027 GTCCCGCTCTCACACAAAATT 59.120 47.619 0.00 0.00 0.00 1.82
2350 2672 0.878523 CGTCCCGCTCTCACACAAAA 60.879 55.000 0.00 0.00 0.00 2.44
2352 2674 1.532604 ATCGTCCCGCTCTCACACAA 61.533 55.000 0.00 0.00 0.00 3.33
2353 2675 1.977009 ATCGTCCCGCTCTCACACA 60.977 57.895 0.00 0.00 0.00 3.72
2354 2676 1.517257 CATCGTCCCGCTCTCACAC 60.517 63.158 0.00 0.00 0.00 3.82
2355 2677 1.037579 ATCATCGTCCCGCTCTCACA 61.038 55.000 0.00 0.00 0.00 3.58
2358 2680 0.600557 ATCATCATCGTCCCGCTCTC 59.399 55.000 0.00 0.00 0.00 3.20
2359 2681 0.316522 CATCATCATCGTCCCGCTCT 59.683 55.000 0.00 0.00 0.00 4.09
2363 2716 0.676184 ACCTCATCATCATCGTCCCG 59.324 55.000 0.00 0.00 0.00 5.14
2365 2718 2.894126 ACCTACCTCATCATCATCGTCC 59.106 50.000 0.00 0.00 0.00 4.79
2368 2721 5.183904 TCACATACCTACCTCATCATCATCG 59.816 44.000 0.00 0.00 0.00 3.84
2385 2738 3.498397 CACCAACACCACTCTTCACATAC 59.502 47.826 0.00 0.00 0.00 2.39
2475 2834 2.745152 CGTCTCTCCCCTGTTTGTTTGT 60.745 50.000 0.00 0.00 0.00 2.83
2476 2835 1.873591 CGTCTCTCCCCTGTTTGTTTG 59.126 52.381 0.00 0.00 0.00 2.93
2477 2836 1.202770 CCGTCTCTCCCCTGTTTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
2478 2837 0.396811 CCGTCTCTCCCCTGTTTGTT 59.603 55.000 0.00 0.00 0.00 2.83
2479 2838 0.471211 TCCGTCTCTCCCCTGTTTGT 60.471 55.000 0.00 0.00 0.00 2.83
2495 2854 1.237285 CCACACCTTTTCCAGCTCCG 61.237 60.000 0.00 0.00 0.00 4.63
2521 2881 2.652348 ACTGGAGAGGAGAGGAAGAAGA 59.348 50.000 0.00 0.00 0.00 2.87
2524 2884 2.512056 CCTACTGGAGAGGAGAGGAAGA 59.488 54.545 0.00 0.00 35.99 2.87
2526 2886 1.063567 GCCTACTGGAGAGGAGAGGAA 60.064 57.143 0.00 0.00 35.99 3.36
2566 2926 3.197549 AGAGGAAGAAGAAGATCACTGCC 59.802 47.826 0.00 0.00 0.00 4.85
2569 2929 6.872585 ATGAAGAGGAAGAAGAAGATCACT 57.127 37.500 0.00 0.00 0.00 3.41
2603 2969 2.315176 CAGAGGGGGACAGAGACATAG 58.685 57.143 0.00 0.00 0.00 2.23
2605 2971 0.980231 GCAGAGGGGGACAGAGACAT 60.980 60.000 0.00 0.00 0.00 3.06
2607 2973 0.980231 ATGCAGAGGGGGACAGAGAC 60.980 60.000 0.00 0.00 0.00 3.36
2609 2975 0.979709 TGATGCAGAGGGGGACAGAG 60.980 60.000 0.00 0.00 0.00 3.35
2616 2982 2.224695 TGATGCTAATGATGCAGAGGGG 60.225 50.000 0.00 0.00 44.04 4.79
2618 2984 2.484651 GCTGATGCTAATGATGCAGAGG 59.515 50.000 0.00 0.00 44.04 3.69
2630 3000 0.393820 TGATGCCGATGCTGATGCTA 59.606 50.000 0.00 0.00 40.48 3.49
2643 3013 1.660560 ATTTCCGTGCTGCTGATGCC 61.661 55.000 0.00 0.00 38.71 4.40
2650 3020 3.198068 TCTCTGATTATTTCCGTGCTGC 58.802 45.455 0.00 0.00 0.00 5.25
2686 3101 4.016444 CAATACCCAAGCTAACCACACAT 58.984 43.478 0.00 0.00 0.00 3.21
2707 3133 3.957586 CAGCCAGCCAGACCACCA 61.958 66.667 0.00 0.00 0.00 4.17
2761 3187 2.730196 AAAGGAAGCAGGGGAGGGGA 62.730 60.000 0.00 0.00 0.00 4.81
2823 3249 1.138266 TCGGAATCGGAGGATTGTTCC 59.862 52.381 0.00 0.00 42.86 3.62
2824 3250 2.596904 TCGGAATCGGAGGATTGTTC 57.403 50.000 0.00 0.00 42.86 3.18
2841 3271 2.480587 GGGGTTTTAATTTGCGGGATCG 60.481 50.000 0.00 0.00 39.81 3.69
2842 3272 2.480587 CGGGGTTTTAATTTGCGGGATC 60.481 50.000 0.00 0.00 0.00 3.36
2843 3273 1.478916 CGGGGTTTTAATTTGCGGGAT 59.521 47.619 0.00 0.00 0.00 3.85
2844 3274 0.889306 CGGGGTTTTAATTTGCGGGA 59.111 50.000 0.00 0.00 0.00 5.14
2845 3275 0.889306 TCGGGGTTTTAATTTGCGGG 59.111 50.000 0.00 0.00 0.00 6.13
2846 3276 2.726832 TTCGGGGTTTTAATTTGCGG 57.273 45.000 0.00 0.00 0.00 5.69
2847 3277 5.627780 GCTATATTCGGGGTTTTAATTTGCG 59.372 40.000 0.00 0.00 0.00 4.85
2848 3278 6.419710 GTGCTATATTCGGGGTTTTAATTTGC 59.580 38.462 0.00 0.00 0.00 3.68
2849 3279 6.921307 GGTGCTATATTCGGGGTTTTAATTTG 59.079 38.462 0.00 0.00 0.00 2.32
2850 3280 6.608002 TGGTGCTATATTCGGGGTTTTAATTT 59.392 34.615 0.00 0.00 0.00 1.82
2851 3281 6.130569 TGGTGCTATATTCGGGGTTTTAATT 58.869 36.000 0.00 0.00 0.00 1.40
2852 3282 5.697067 TGGTGCTATATTCGGGGTTTTAAT 58.303 37.500 0.00 0.00 0.00 1.40
2853 3283 5.113446 TGGTGCTATATTCGGGGTTTTAA 57.887 39.130 0.00 0.00 0.00 1.52
2854 3284 4.774660 TGGTGCTATATTCGGGGTTTTA 57.225 40.909 0.00 0.00 0.00 1.52
2855 3285 3.655615 TGGTGCTATATTCGGGGTTTT 57.344 42.857 0.00 0.00 0.00 2.43
2863 3293 8.316640 AGATTCTTTCGAATGGTGCTATATTC 57.683 34.615 10.78 0.00 39.89 1.75
2867 3297 4.747108 CGAGATTCTTTCGAATGGTGCTAT 59.253 41.667 10.78 0.00 39.89 2.97
2868 3298 4.112634 CGAGATTCTTTCGAATGGTGCTA 58.887 43.478 10.78 0.00 39.89 3.49
2869 3299 2.932614 CGAGATTCTTTCGAATGGTGCT 59.067 45.455 10.78 5.87 39.89 4.40
2870 3300 2.930040 TCGAGATTCTTTCGAATGGTGC 59.070 45.455 10.78 1.65 43.39 5.01
2878 3308 2.154580 CGGCATCATCGAGATTCTTTCG 59.845 50.000 0.00 0.00 39.33 3.46
2879 3309 2.478134 CCGGCATCATCGAGATTCTTTC 59.522 50.000 0.00 0.00 33.72 2.62
2880 3310 2.103094 TCCGGCATCATCGAGATTCTTT 59.897 45.455 0.00 0.00 33.72 2.52
2881 3311 1.688735 TCCGGCATCATCGAGATTCTT 59.311 47.619 0.00 0.00 33.72 2.52
2882 3312 1.000283 GTCCGGCATCATCGAGATTCT 60.000 52.381 0.00 0.00 33.72 2.40
2883 3313 1.423395 GTCCGGCATCATCGAGATTC 58.577 55.000 0.00 0.00 33.72 2.52
2884 3314 0.034059 GGTCCGGCATCATCGAGATT 59.966 55.000 0.00 0.00 33.72 2.40
2885 3315 1.668294 GGTCCGGCATCATCGAGAT 59.332 57.895 0.00 0.00 37.48 2.75
2886 3316 2.845550 CGGTCCGGCATCATCGAGA 61.846 63.158 2.34 0.00 0.00 4.04
2887 3317 2.355126 CGGTCCGGCATCATCGAG 60.355 66.667 2.34 0.00 0.00 4.04
2888 3318 4.585526 GCGGTCCGGCATCATCGA 62.586 66.667 14.38 0.00 0.00 3.59
2889 3319 4.889856 TGCGGTCCGGCATCATCG 62.890 66.667 14.38 0.00 38.17 3.84
2890 3320 2.513666 TTGCGGTCCGGCATCATC 60.514 61.111 14.38 0.00 43.52 2.92
2891 3321 2.824041 GTTGCGGTCCGGCATCAT 60.824 61.111 14.38 0.00 43.52 2.45
2892 3322 3.950794 GAGTTGCGGTCCGGCATCA 62.951 63.158 14.38 0.00 43.52 3.07
2893 3323 2.292794 TAGAGTTGCGGTCCGGCATC 62.293 60.000 14.38 10.44 43.52 3.91
2894 3324 1.686325 ATAGAGTTGCGGTCCGGCAT 61.686 55.000 14.38 0.00 43.52 4.40
2895 3325 1.895020 AATAGAGTTGCGGTCCGGCA 61.895 55.000 14.38 8.85 42.12 5.69
2896 3326 0.743345 AAATAGAGTTGCGGTCCGGC 60.743 55.000 14.38 6.07 0.00 6.13
2897 3327 1.006832 CAAATAGAGTTGCGGTCCGG 58.993 55.000 14.38 0.00 0.00 5.14
2898 3328 1.006832 CCAAATAGAGTTGCGGTCCG 58.993 55.000 6.99 6.99 0.00 4.79
2899 3329 2.007608 GACCAAATAGAGTTGCGGTCC 58.992 52.381 0.00 0.00 0.00 4.46
2900 3330 2.673368 CAGACCAAATAGAGTTGCGGTC 59.327 50.000 0.00 0.00 0.00 4.79
2901 3331 2.699954 CAGACCAAATAGAGTTGCGGT 58.300 47.619 0.00 0.00 0.00 5.68
2902 3332 1.398390 GCAGACCAAATAGAGTTGCGG 59.602 52.381 0.00 0.00 0.00 5.69
2903 3333 1.398390 GGCAGACCAAATAGAGTTGCG 59.602 52.381 0.00 0.00 35.26 4.85
2904 3334 1.398390 CGGCAGACCAAATAGAGTTGC 59.602 52.381 0.00 0.00 34.57 4.17
2905 3335 1.398390 GCGGCAGACCAAATAGAGTTG 59.602 52.381 0.00 0.00 34.57 3.16
2906 3336 1.679032 GGCGGCAGACCAAATAGAGTT 60.679 52.381 3.07 0.00 34.57 3.01
2907 3337 0.107654 GGCGGCAGACCAAATAGAGT 60.108 55.000 3.07 0.00 34.57 3.24
2908 3338 0.179000 AGGCGGCAGACCAAATAGAG 59.821 55.000 13.08 0.00 34.57 2.43
2909 3339 0.618458 AAGGCGGCAGACCAAATAGA 59.382 50.000 13.08 0.00 34.57 1.98
2910 3340 1.133025 CAAAGGCGGCAGACCAAATAG 59.867 52.381 13.08 0.00 34.57 1.73
2911 3341 1.173043 CAAAGGCGGCAGACCAAATA 58.827 50.000 13.08 0.00 34.57 1.40
2912 3342 1.966762 CAAAGGCGGCAGACCAAAT 59.033 52.632 13.08 0.00 34.57 2.32
2913 3343 2.855514 GCAAAGGCGGCAGACCAAA 61.856 57.895 13.08 0.00 34.57 3.28
2914 3344 3.294493 GCAAAGGCGGCAGACCAA 61.294 61.111 13.08 0.00 34.57 3.67
2915 3345 3.866379 ATGCAAAGGCGGCAGACCA 62.866 57.895 13.08 3.10 45.68 4.02
2916 3346 3.056313 GATGCAAAGGCGGCAGACC 62.056 63.158 13.08 0.00 45.68 3.85
2917 3347 2.486966 GATGCAAAGGCGGCAGAC 59.513 61.111 13.08 0.00 45.68 3.51
2918 3348 2.874648 ATCGATGCAAAGGCGGCAGA 62.875 55.000 13.08 0.00 45.68 4.26
2919 3349 2.384391 GATCGATGCAAAGGCGGCAG 62.384 60.000 13.08 1.14 45.68 4.85
2920 3350 2.438254 ATCGATGCAAAGGCGGCA 60.438 55.556 13.08 0.00 46.66 5.69
2921 3351 2.329339 GATCGATGCAAAGGCGGC 59.671 61.111 0.54 0.00 45.35 6.53
2922 3352 1.224069 ATCGATCGATGCAAAGGCGG 61.224 55.000 28.90 0.00 45.35 6.13
2923 3353 0.110956 CATCGATCGATGCAAAGGCG 60.111 55.000 37.03 17.22 44.27 5.52
2924 3354 3.742290 CATCGATCGATGCAAAGGC 57.258 52.632 37.03 0.00 44.27 4.35
2932 3362 2.584492 TCTTGTGTGCATCGATCGAT 57.416 45.000 24.60 24.60 34.81 3.59
2933 3363 2.159254 TGATCTTGTGTGCATCGATCGA 60.159 45.455 21.86 21.86 36.00 3.59
2934 3364 2.195922 TGATCTTGTGTGCATCGATCG 58.804 47.619 9.36 9.36 36.00 3.69
2935 3365 3.242543 GGTTGATCTTGTGTGCATCGATC 60.243 47.826 0.00 0.00 34.89 3.69
2936 3366 2.679837 GGTTGATCTTGTGTGCATCGAT 59.320 45.455 0.00 0.00 0.00 3.59
2937 3367 2.076100 GGTTGATCTTGTGTGCATCGA 58.924 47.619 0.00 0.00 0.00 3.59
2938 3368 2.079158 AGGTTGATCTTGTGTGCATCG 58.921 47.619 0.00 0.00 0.00 3.84
2939 3369 2.421424 GGAGGTTGATCTTGTGTGCATC 59.579 50.000 0.00 0.00 0.00 3.91
2940 3370 2.440409 GGAGGTTGATCTTGTGTGCAT 58.560 47.619 0.00 0.00 0.00 3.96
2941 3371 1.877680 CGGAGGTTGATCTTGTGTGCA 60.878 52.381 0.00 0.00 0.00 4.57
2942 3372 0.798776 CGGAGGTTGATCTTGTGTGC 59.201 55.000 0.00 0.00 0.00 4.57
2943 3373 2.455674 TCGGAGGTTGATCTTGTGTG 57.544 50.000 0.00 0.00 0.00 3.82
2944 3374 3.338249 CAATCGGAGGTTGATCTTGTGT 58.662 45.455 0.00 0.00 0.00 3.72
2945 3375 2.679837 CCAATCGGAGGTTGATCTTGTG 59.320 50.000 0.00 0.00 0.00 3.33
2946 3376 2.305927 ACCAATCGGAGGTTGATCTTGT 59.694 45.455 0.00 0.00 35.33 3.16
2947 3377 2.991250 ACCAATCGGAGGTTGATCTTG 58.009 47.619 0.00 0.00 35.33 3.02
2955 3385 1.375523 GCGACAACCAATCGGAGGT 60.376 57.895 0.00 0.00 42.34 3.85
2956 3386 2.452813 CGCGACAACCAATCGGAGG 61.453 63.158 0.00 0.00 39.99 4.30
2957 3387 2.452813 CCGCGACAACCAATCGGAG 61.453 63.158 8.23 0.00 42.43 4.63
2958 3388 2.433491 CCGCGACAACCAATCGGA 60.433 61.111 8.23 0.00 42.43 4.55
2959 3389 4.160635 GCCGCGACAACCAATCGG 62.161 66.667 8.23 0.00 39.99 4.18
2960 3390 1.355796 TTAGCCGCGACAACCAATCG 61.356 55.000 8.23 0.00 42.55 3.34
2961 3391 1.014352 ATTAGCCGCGACAACCAATC 58.986 50.000 8.23 0.00 0.00 2.67
2962 3392 1.937899 GTATTAGCCGCGACAACCAAT 59.062 47.619 8.23 0.60 0.00 3.16
2963 3393 1.361793 GTATTAGCCGCGACAACCAA 58.638 50.000 8.23 0.00 0.00 3.67
2964 3394 0.802994 CGTATTAGCCGCGACAACCA 60.803 55.000 8.23 0.00 0.00 3.67
2965 3395 1.485032 CCGTATTAGCCGCGACAACC 61.485 60.000 8.23 0.00 0.00 3.77
2966 3396 0.526096 TCCGTATTAGCCGCGACAAC 60.526 55.000 8.23 0.00 0.00 3.32
2967 3397 0.248743 CTCCGTATTAGCCGCGACAA 60.249 55.000 8.23 0.00 0.00 3.18
2968 3398 1.357690 CTCCGTATTAGCCGCGACA 59.642 57.895 8.23 0.00 0.00 4.35
2969 3399 0.659711 GACTCCGTATTAGCCGCGAC 60.660 60.000 8.23 0.00 0.00 5.19
2970 3400 1.650912 GACTCCGTATTAGCCGCGA 59.349 57.895 8.23 0.00 0.00 5.87
2971 3401 1.724929 CGACTCCGTATTAGCCGCG 60.725 63.158 0.00 0.00 0.00 6.46
2972 3402 2.015090 GCGACTCCGTATTAGCCGC 61.015 63.158 0.00 0.00 38.24 6.53
2973 3403 1.724929 CGCGACTCCGTATTAGCCG 60.725 63.158 0.00 0.00 38.24 5.52
2974 3404 1.371389 CCGCGACTCCGTATTAGCC 60.371 63.158 8.23 0.00 38.24 3.93
2975 3405 2.015090 GCCGCGACTCCGTATTAGC 61.015 63.158 8.23 0.00 38.24 3.09
2976 3406 1.724929 CGCCGCGACTCCGTATTAG 60.725 63.158 8.23 0.00 38.24 1.73
2977 3407 2.328989 CGCCGCGACTCCGTATTA 59.671 61.111 8.23 0.00 38.24 0.98
2978 3408 3.818787 ACGCCGCGACTCCGTATT 61.819 61.111 21.79 0.00 38.24 1.89
2979 3409 4.547905 CACGCCGCGACTCCGTAT 62.548 66.667 21.79 0.00 38.24 3.06
2989 3419 3.782244 CAGAGAGCAACACGCCGC 61.782 66.667 0.00 0.00 44.04 6.53
2990 3420 3.114616 CCAGAGAGCAACACGCCG 61.115 66.667 0.00 0.00 44.04 6.46
2991 3421 2.743928 CCCAGAGAGCAACACGCC 60.744 66.667 0.00 0.00 44.04 5.68
2992 3422 2.743928 CCCCAGAGAGCAACACGC 60.744 66.667 0.00 0.00 42.91 5.34
2993 3423 1.374758 GACCCCAGAGAGCAACACG 60.375 63.158 0.00 0.00 0.00 4.49
2994 3424 0.326264 ATGACCCCAGAGAGCAACAC 59.674 55.000 0.00 0.00 0.00 3.32
2995 3425 0.325933 CATGACCCCAGAGAGCAACA 59.674 55.000 0.00 0.00 0.00 3.33
2996 3426 0.393537 CCATGACCCCAGAGAGCAAC 60.394 60.000 0.00 0.00 0.00 4.17
2997 3427 1.565390 CCCATGACCCCAGAGAGCAA 61.565 60.000 0.00 0.00 0.00 3.91
2998 3428 1.997311 CCCATGACCCCAGAGAGCA 60.997 63.158 0.00 0.00 0.00 4.26
2999 3429 2.914289 CCCATGACCCCAGAGAGC 59.086 66.667 0.00 0.00 0.00 4.09
3000 3430 1.277580 AAGCCCATGACCCCAGAGAG 61.278 60.000 0.00 0.00 0.00 3.20
3001 3431 1.229951 AAGCCCATGACCCCAGAGA 60.230 57.895 0.00 0.00 0.00 3.10
3002 3432 1.077212 CAAGCCCATGACCCCAGAG 60.077 63.158 0.00 0.00 0.00 3.35
3003 3433 0.920763 ATCAAGCCCATGACCCCAGA 60.921 55.000 0.00 0.00 30.82 3.86
3004 3434 0.754217 CATCAAGCCCATGACCCCAG 60.754 60.000 0.00 0.00 30.82 4.45
3005 3435 1.307309 CATCAAGCCCATGACCCCA 59.693 57.895 0.00 0.00 30.82 4.96
3006 3436 2.129785 GCATCAAGCCCATGACCCC 61.130 63.158 0.00 0.00 37.23 4.95
3007 3437 3.530067 GCATCAAGCCCATGACCC 58.470 61.111 0.00 0.00 37.23 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.