Multiple sequence alignment - TraesCS2A01G002100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G002100 chr2A 100.000 2856 0 0 598 3453 1165620 1162765 0.000000e+00 5275.0
1 TraesCS2A01G002100 chr2A 100.000 164 0 0 1 164 1166217 1166054 1.560000e-78 303.0
2 TraesCS2A01G002100 chr2A 91.860 86 6 1 598 682 383360230 383360145 6.050000e-23 119.0
3 TraesCS2A01G002100 chr2A 79.825 114 23 0 1040 1153 32863628 32863741 2.210000e-12 84.2
4 TraesCS2A01G002100 chr2B 94.791 1075 33 10 1554 2607 10077712 10076640 0.000000e+00 1653.0
5 TraesCS2A01G002100 chr2B 87.967 723 51 13 806 1520 10078401 10077707 0.000000e+00 821.0
6 TraesCS2A01G002100 chr2B 86.182 275 20 8 2347 2607 9768777 9769047 7.300000e-72 281.0
7 TraesCS2A01G002100 chr2B 97.887 142 3 0 2603 2744 10076378 10076237 2.660000e-61 246.0
8 TraesCS2A01G002100 chr2B 91.765 85 7 0 598 682 263631466 263631382 6.050000e-23 119.0
9 TraesCS2A01G002100 chr2B 91.765 85 7 0 598 682 367705599 367705515 6.050000e-23 119.0
10 TraesCS2A01G002100 chr2B 76.316 114 27 0 1040 1153 50411248 50411361 1.030000e-05 62.1
11 TraesCS2A01G002100 chr2D 94.195 913 34 3 870 1782 1703546 1702653 0.000000e+00 1375.0
12 TraesCS2A01G002100 chr2D 92.613 731 34 9 1881 2607 1702554 1701840 0.000000e+00 1033.0
13 TraesCS2A01G002100 chr2D 88.973 789 69 6 2603 3374 1701579 1700792 0.000000e+00 959.0
14 TraesCS2A01G002100 chr2D 89.668 271 16 6 600 870 1716263 1716005 5.520000e-88 335.0
15 TraesCS2A01G002100 chr2D 89.888 89 9 0 1786 1874 393072484 393072396 7.830000e-22 115.0
16 TraesCS2A01G002100 chr2D 87.640 89 11 0 1786 1874 36032612 36032700 1.700000e-18 104.0
17 TraesCS2A01G002100 chr2D 87.640 89 11 0 1786 1874 392704877 392704789 1.700000e-18 104.0
18 TraesCS2A01G002100 chr1A 98.171 164 3 0 1 164 516062027 516061864 1.570000e-73 287.0
19 TraesCS2A01G002100 chr1A 98.089 157 3 0 1 157 422736858 422737014 1.220000e-69 274.0
20 TraesCS2A01G002100 chr1A 96.341 164 6 0 1 164 587058239 587058402 1.580000e-68 270.0
21 TraesCS2A01G002100 chr1A 90.588 85 8 0 598 682 507367525 507367609 2.820000e-21 113.0
22 TraesCS2A01G002100 chr7A 96.933 163 5 0 2 164 640175919 640176081 1.220000e-69 274.0
23 TraesCS2A01G002100 chr6A 96.341 164 6 0 1 164 88330034 88329871 1.580000e-68 270.0
24 TraesCS2A01G002100 chr6A 96.341 164 6 0 1 164 507400897 507400734 1.580000e-68 270.0
25 TraesCS2A01G002100 chr4A 96.341 164 6 0 1 164 374271379 374271216 1.580000e-68 270.0
26 TraesCS2A01G002100 chr4A 96.341 164 6 0 1 164 596626875 596626712 1.580000e-68 270.0
27 TraesCS2A01G002100 chr4A 96.341 164 6 0 1 164 627506117 627505954 1.580000e-68 270.0
28 TraesCS2A01G002100 chr3B 91.954 87 7 0 598 684 415897001 415896915 4.680000e-24 122.0
29 TraesCS2A01G002100 chr7D 91.765 85 7 0 598 682 262284040 262283956 6.050000e-23 119.0
30 TraesCS2A01G002100 chr7D 87.640 89 11 0 1786 1874 448510687 448510599 1.700000e-18 104.0
31 TraesCS2A01G002100 chr7D 87.097 93 11 1 1787 1879 466832825 466832734 1.700000e-18 104.0
32 TraesCS2A01G002100 chr5D 91.765 85 7 0 598 682 83885564 83885480 6.050000e-23 119.0
33 TraesCS2A01G002100 chr5D 87.640 89 11 0 1786 1874 316247515 316247427 1.700000e-18 104.0
34 TraesCS2A01G002100 chr1D 91.765 85 5 2 599 682 415182399 415182316 2.180000e-22 117.0
35 TraesCS2A01G002100 chr5B 85.437 103 14 1 1772 1874 287185573 287185674 4.710000e-19 106.0
36 TraesCS2A01G002100 chr3D 84.466 103 15 1 1772 1874 279555634 279555533 2.190000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G002100 chr2A 1162765 1166217 3452 True 2789.000000 5275 100.000000 1 3453 2 chr2A.!!$R2 3452
1 TraesCS2A01G002100 chr2B 10076237 10078401 2164 True 906.666667 1653 93.548333 806 2744 3 chr2B.!!$R3 1938
2 TraesCS2A01G002100 chr2D 1700792 1703546 2754 True 1122.333333 1375 91.927000 870 3374 3 chr2D.!!$R4 2504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
741 742 0.111704 CTTGACTTCGTTCGCGTGTG 60.112 55.0 5.77 0.00 42.11 3.82 F
751 752 0.385098 TTCGCGTGTGTCGAGTAGTG 60.385 55.0 5.77 0.00 42.86 2.74 F
762 763 0.388134 CGAGTAGTGTCCGTGTTGGG 60.388 60.0 0.00 0.00 38.76 4.12 F
1499 1510 0.390860 AGAGTCTTGCGCAGAACTGT 59.609 50.0 25.63 20.45 31.28 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1565 0.031585 TTGTCGAGGAGAACACGGTG 59.968 55.0 6.58 6.58 0.00 4.94 R
1804 1815 0.810031 ATAGAACGACGCACATGCCC 60.810 55.0 0.00 0.00 37.91 5.36 R
2169 2192 0.810031 CTCCGCCATTGGTTCGTAGG 60.810 60.0 4.26 0.00 0.00 3.18 R
3163 3516 0.032678 AGATGGCGGCGTAGAAGATG 59.967 55.0 9.37 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.762933 ATACACATAAACTGCAAATTTTCTTGT 57.237 25.926 1.24 5.23 0.00 3.16
31 32 8.130307 ACACATAAACTGCAAATTTTCTTGTC 57.870 30.769 1.24 0.00 0.00 3.18
32 33 7.981225 ACACATAAACTGCAAATTTTCTTGTCT 59.019 29.630 1.24 0.00 0.00 3.41
33 34 8.819974 CACATAAACTGCAAATTTTCTTGTCTT 58.180 29.630 1.24 0.00 0.00 3.01
38 39 9.768662 AAACTGCAAATTTTCTTGTCTTATGAT 57.231 25.926 0.00 0.00 0.00 2.45
39 40 8.976986 ACTGCAAATTTTCTTGTCTTATGATC 57.023 30.769 0.00 0.00 0.00 2.92
40 41 8.800332 ACTGCAAATTTTCTTGTCTTATGATCT 58.200 29.630 0.00 0.00 0.00 2.75
153 154 5.434352 TCGTAAGATTACCTCGGATGAAG 57.566 43.478 0.00 0.00 45.01 3.02
154 155 5.128205 TCGTAAGATTACCTCGGATGAAGA 58.872 41.667 0.00 0.00 45.01 2.87
155 156 5.591472 TCGTAAGATTACCTCGGATGAAGAA 59.409 40.000 0.00 0.00 45.01 2.52
156 157 6.264744 TCGTAAGATTACCTCGGATGAAGAAT 59.735 38.462 0.00 0.00 45.01 2.40
157 158 6.924060 CGTAAGATTACCTCGGATGAAGAATT 59.076 38.462 0.00 0.00 43.02 2.17
158 159 8.080417 CGTAAGATTACCTCGGATGAAGAATTA 58.920 37.037 0.00 0.00 43.02 1.40
159 160 9.194271 GTAAGATTACCTCGGATGAAGAATTAC 57.806 37.037 0.00 0.00 0.00 1.89
160 161 6.448006 AGATTACCTCGGATGAAGAATTACG 58.552 40.000 0.00 0.00 0.00 3.18
161 162 5.587388 TTACCTCGGATGAAGAATTACGT 57.413 39.130 0.00 0.00 0.00 3.57
162 163 6.698008 TTACCTCGGATGAAGAATTACGTA 57.302 37.500 0.00 0.00 0.00 3.57
163 164 5.786264 ACCTCGGATGAAGAATTACGTAT 57.214 39.130 0.00 0.00 0.00 3.06
636 637 8.862325 ACATGAACTATTTGGAATACAAGACA 57.138 30.769 0.00 0.00 40.82 3.41
637 638 9.295825 ACATGAACTATTTGGAATACAAGACAA 57.704 29.630 0.00 0.00 40.82 3.18
638 639 9.778993 CATGAACTATTTGGAATACAAGACAAG 57.221 33.333 0.00 0.00 40.82 3.16
639 640 7.816640 TGAACTATTTGGAATACAAGACAAGC 58.183 34.615 0.00 0.00 40.82 4.01
640 641 6.759497 ACTATTTGGAATACAAGACAAGCC 57.241 37.500 0.00 0.00 40.82 4.35
641 642 6.245408 ACTATTTGGAATACAAGACAAGCCA 58.755 36.000 0.00 0.00 40.82 4.75
642 643 5.649782 ATTTGGAATACAAGACAAGCCAG 57.350 39.130 0.00 0.00 40.82 4.85
643 644 4.365514 TTGGAATACAAGACAAGCCAGA 57.634 40.909 0.00 0.00 33.18 3.86
644 645 4.365514 TGGAATACAAGACAAGCCAGAA 57.634 40.909 0.00 0.00 0.00 3.02
645 646 4.922206 TGGAATACAAGACAAGCCAGAAT 58.078 39.130 0.00 0.00 0.00 2.40
646 647 6.061022 TGGAATACAAGACAAGCCAGAATA 57.939 37.500 0.00 0.00 0.00 1.75
647 648 6.662755 TGGAATACAAGACAAGCCAGAATAT 58.337 36.000 0.00 0.00 0.00 1.28
648 649 7.118723 TGGAATACAAGACAAGCCAGAATATT 58.881 34.615 0.00 0.00 0.00 1.28
649 650 7.615365 TGGAATACAAGACAAGCCAGAATATTT 59.385 33.333 0.00 0.00 0.00 1.40
650 651 8.470002 GGAATACAAGACAAGCCAGAATATTTT 58.530 33.333 0.00 0.00 0.00 1.82
651 652 9.508567 GAATACAAGACAAGCCAGAATATTTTC 57.491 33.333 0.00 0.00 0.00 2.29
652 653 8.814038 ATACAAGACAAGCCAGAATATTTTCT 57.186 30.769 0.00 0.00 43.09 2.52
653 654 9.905713 ATACAAGACAAGCCAGAATATTTTCTA 57.094 29.630 0.00 0.00 40.28 2.10
654 655 8.273780 ACAAGACAAGCCAGAATATTTTCTAG 57.726 34.615 0.00 0.00 40.28 2.43
655 656 7.885399 ACAAGACAAGCCAGAATATTTTCTAGT 59.115 33.333 0.00 0.00 40.28 2.57
656 657 8.394121 CAAGACAAGCCAGAATATTTTCTAGTC 58.606 37.037 0.00 3.37 40.28 2.59
657 658 7.856415 AGACAAGCCAGAATATTTTCTAGTCT 58.144 34.615 0.00 5.20 40.28 3.24
658 659 8.982723 AGACAAGCCAGAATATTTTCTAGTCTA 58.017 33.333 0.00 0.00 40.28 2.59
659 660 9.771534 GACAAGCCAGAATATTTTCTAGTCTAT 57.228 33.333 0.00 0.00 40.28 1.98
660 661 9.771534 ACAAGCCAGAATATTTTCTAGTCTATC 57.228 33.333 0.00 0.00 40.28 2.08
661 662 9.213799 CAAGCCAGAATATTTTCTAGTCTATCC 57.786 37.037 0.00 0.00 40.28 2.59
662 663 8.734593 AGCCAGAATATTTTCTAGTCTATCCT 57.265 34.615 0.00 0.00 40.28 3.24
663 664 9.830186 AGCCAGAATATTTTCTAGTCTATCCTA 57.170 33.333 0.00 0.00 40.28 2.94
676 677 9.877222 TCTAGTCTATCCTATGTTTCCAATACA 57.123 33.333 0.00 0.00 0.00 2.29
680 681 9.778741 GTCTATCCTATGTTTCCAATACAATCA 57.221 33.333 0.00 0.00 0.00 2.57
681 682 9.778741 TCTATCCTATGTTTCCAATACAATCAC 57.221 33.333 0.00 0.00 0.00 3.06
682 683 7.823745 ATCCTATGTTTCCAATACAATCACC 57.176 36.000 0.00 0.00 0.00 4.02
683 684 6.969043 TCCTATGTTTCCAATACAATCACCT 58.031 36.000 0.00 0.00 0.00 4.00
684 685 8.096621 TCCTATGTTTCCAATACAATCACCTA 57.903 34.615 0.00 0.00 0.00 3.08
685 686 8.553153 TCCTATGTTTCCAATACAATCACCTAA 58.447 33.333 0.00 0.00 0.00 2.69
686 687 9.184523 CCTATGTTTCCAATACAATCACCTAAA 57.815 33.333 0.00 0.00 0.00 1.85
688 689 6.904498 TGTTTCCAATACAATCACCTAAACG 58.096 36.000 0.00 0.00 0.00 3.60
689 690 6.711194 TGTTTCCAATACAATCACCTAAACGA 59.289 34.615 0.00 0.00 0.00 3.85
690 691 7.392113 TGTTTCCAATACAATCACCTAAACGAT 59.608 33.333 0.00 0.00 0.00 3.73
691 692 6.918892 TCCAATACAATCACCTAAACGATG 57.081 37.500 0.00 0.00 0.00 3.84
692 693 6.411376 TCCAATACAATCACCTAAACGATGT 58.589 36.000 0.00 0.00 0.00 3.06
693 694 7.557724 TCCAATACAATCACCTAAACGATGTA 58.442 34.615 0.00 0.00 0.00 2.29
694 695 8.208224 TCCAATACAATCACCTAAACGATGTAT 58.792 33.333 0.00 0.00 0.00 2.29
695 696 8.282592 CCAATACAATCACCTAAACGATGTATG 58.717 37.037 0.00 0.00 0.00 2.39
696 697 9.040939 CAATACAATCACCTAAACGATGTATGA 57.959 33.333 0.00 0.00 0.00 2.15
697 698 9.607988 AATACAATCACCTAAACGATGTATGAA 57.392 29.630 0.00 0.00 0.00 2.57
698 699 7.915293 ACAATCACCTAAACGATGTATGAAA 57.085 32.000 0.00 0.00 0.00 2.69
699 700 7.748847 ACAATCACCTAAACGATGTATGAAAC 58.251 34.615 0.00 0.00 0.00 2.78
700 701 7.389330 ACAATCACCTAAACGATGTATGAAACA 59.611 33.333 0.00 0.00 43.86 2.83
701 702 6.961359 TCACCTAAACGATGTATGAAACAG 57.039 37.500 0.00 0.00 42.70 3.16
702 703 6.460781 TCACCTAAACGATGTATGAAACAGT 58.539 36.000 0.00 0.00 42.70 3.55
703 704 7.604549 TCACCTAAACGATGTATGAAACAGTA 58.395 34.615 0.00 0.00 42.70 2.74
704 705 8.089597 TCACCTAAACGATGTATGAAACAGTAA 58.910 33.333 0.00 0.00 42.70 2.24
705 706 8.879759 CACCTAAACGATGTATGAAACAGTAAT 58.120 33.333 0.00 0.00 42.70 1.89
706 707 9.095065 ACCTAAACGATGTATGAAACAGTAATC 57.905 33.333 0.00 0.00 42.70 1.75
707 708 8.266682 CCTAAACGATGTATGAAACAGTAATCG 58.733 37.037 0.00 0.00 42.70 3.34
708 709 7.591006 AAACGATGTATGAAACAGTAATCGT 57.409 32.000 2.24 2.24 46.58 3.73
709 710 8.692110 AAACGATGTATGAAACAGTAATCGTA 57.308 30.769 8.06 0.00 44.88 3.43
710 711 8.867112 AACGATGTATGAAACAGTAATCGTAT 57.133 30.769 8.06 0.00 44.88 3.06
711 712 8.503486 ACGATGTATGAAACAGTAATCGTATC 57.497 34.615 6.05 0.00 44.21 2.24
712 713 7.594015 ACGATGTATGAAACAGTAATCGTATCC 59.406 37.037 6.05 0.00 44.21 2.59
713 714 7.808381 CGATGTATGAAACAGTAATCGTATCCT 59.192 37.037 0.00 0.00 42.70 3.24
730 731 9.930693 ATCGTATCCTATATTTTCCTTGACTTC 57.069 33.333 0.00 0.00 0.00 3.01
731 732 8.080417 TCGTATCCTATATTTTCCTTGACTTCG 58.920 37.037 0.00 0.00 0.00 3.79
732 733 7.866393 CGTATCCTATATTTTCCTTGACTTCGT 59.134 37.037 0.00 0.00 0.00 3.85
733 734 9.543783 GTATCCTATATTTTCCTTGACTTCGTT 57.456 33.333 0.00 0.00 0.00 3.85
734 735 8.664211 ATCCTATATTTTCCTTGACTTCGTTC 57.336 34.615 0.00 0.00 0.00 3.95
735 736 6.755141 TCCTATATTTTCCTTGACTTCGTTCG 59.245 38.462 0.00 0.00 0.00 3.95
736 737 3.537793 ATTTTCCTTGACTTCGTTCGC 57.462 42.857 0.00 0.00 0.00 4.70
737 738 0.856641 TTTCCTTGACTTCGTTCGCG 59.143 50.000 0.00 0.00 42.98 5.87
738 739 0.249155 TTCCTTGACTTCGTTCGCGT 60.249 50.000 5.77 0.00 42.11 6.01
739 740 0.937699 TCCTTGACTTCGTTCGCGTG 60.938 55.000 5.77 0.00 42.11 5.34
740 741 1.213094 CCTTGACTTCGTTCGCGTGT 61.213 55.000 5.77 0.00 42.11 4.49
741 742 0.111704 CTTGACTTCGTTCGCGTGTG 60.112 55.000 5.77 0.00 42.11 3.82
742 743 0.802994 TTGACTTCGTTCGCGTGTGT 60.803 50.000 5.77 0.00 42.11 3.72
743 744 1.204228 TGACTTCGTTCGCGTGTGTC 61.204 55.000 5.77 8.07 42.11 3.67
744 745 2.182505 GACTTCGTTCGCGTGTGTCG 62.183 60.000 5.77 5.46 42.11 4.35
745 746 2.007114 CTTCGTTCGCGTGTGTCGA 61.007 57.895 5.77 7.80 42.86 4.20
746 747 1.920285 CTTCGTTCGCGTGTGTCGAG 61.920 60.000 5.77 2.18 42.86 4.04
747 748 2.651367 TTCGTTCGCGTGTGTCGAGT 62.651 55.000 5.77 0.00 42.86 4.18
748 749 1.439201 CGTTCGCGTGTGTCGAGTA 60.439 57.895 5.77 0.00 42.86 2.59
749 750 1.386293 CGTTCGCGTGTGTCGAGTAG 61.386 60.000 5.77 0.00 42.86 2.57
750 751 0.385223 GTTCGCGTGTGTCGAGTAGT 60.385 55.000 5.77 0.00 42.86 2.73
751 752 0.385098 TTCGCGTGTGTCGAGTAGTG 60.385 55.000 5.77 0.00 42.86 2.74
752 753 1.082300 CGCGTGTGTCGAGTAGTGT 60.082 57.895 0.00 0.00 42.86 3.55
753 754 1.058590 CGCGTGTGTCGAGTAGTGTC 61.059 60.000 0.00 0.00 42.86 3.67
754 755 0.728466 GCGTGTGTCGAGTAGTGTCC 60.728 60.000 0.00 0.00 42.86 4.02
755 756 0.452287 CGTGTGTCGAGTAGTGTCCG 60.452 60.000 0.00 0.00 42.86 4.79
756 757 0.590195 GTGTGTCGAGTAGTGTCCGT 59.410 55.000 0.00 0.00 0.00 4.69
757 758 0.589708 TGTGTCGAGTAGTGTCCGTG 59.410 55.000 0.00 0.00 0.00 4.94
758 759 0.590195 GTGTCGAGTAGTGTCCGTGT 59.410 55.000 0.00 0.00 0.00 4.49
759 760 1.002033 GTGTCGAGTAGTGTCCGTGTT 60.002 52.381 0.00 0.00 0.00 3.32
760 761 1.002142 TGTCGAGTAGTGTCCGTGTTG 60.002 52.381 0.00 0.00 0.00 3.33
761 762 0.594602 TCGAGTAGTGTCCGTGTTGG 59.405 55.000 0.00 0.00 40.09 3.77
762 763 0.388134 CGAGTAGTGTCCGTGTTGGG 60.388 60.000 0.00 0.00 38.76 4.12
763 764 0.677842 GAGTAGTGTCCGTGTTGGGT 59.322 55.000 0.00 0.00 38.76 4.51
764 765 0.391597 AGTAGTGTCCGTGTTGGGTG 59.608 55.000 0.00 0.00 38.76 4.61
765 766 1.070105 TAGTGTCCGTGTTGGGTGC 59.930 57.895 0.00 0.00 38.76 5.01
766 767 2.702751 TAGTGTCCGTGTTGGGTGCG 62.703 60.000 0.00 0.00 38.76 5.34
767 768 4.920112 TGTCCGTGTTGGGTGCGG 62.920 66.667 0.00 0.00 46.12 5.69
768 769 4.922026 GTCCGTGTTGGGTGCGGT 62.922 66.667 0.00 0.00 45.11 5.68
769 770 4.920112 TCCGTGTTGGGTGCGGTG 62.920 66.667 0.00 0.00 45.11 4.94
771 772 3.645975 CGTGTTGGGTGCGGTGTC 61.646 66.667 0.00 0.00 0.00 3.67
772 773 3.284449 GTGTTGGGTGCGGTGTCC 61.284 66.667 0.00 0.00 0.00 4.02
773 774 3.484806 TGTTGGGTGCGGTGTCCT 61.485 61.111 0.00 0.00 0.00 3.85
774 775 2.141448 TGTTGGGTGCGGTGTCCTA 61.141 57.895 0.00 0.00 0.00 2.94
775 776 1.670083 GTTGGGTGCGGTGTCCTAC 60.670 63.158 0.00 0.00 0.00 3.18
776 777 2.141448 TTGGGTGCGGTGTCCTACA 61.141 57.895 0.00 0.00 0.00 2.74
784 785 3.688159 GTGTCCTACACCGGCCGT 61.688 66.667 26.12 8.42 43.05 5.68
802 803 4.324991 GTTGGACGGGACCGCCTT 62.325 66.667 19.59 0.00 44.19 4.35
803 804 2.604079 TTGGACGGGACCGCCTTA 60.604 61.111 19.59 9.32 44.19 2.69
804 805 1.991167 TTGGACGGGACCGCCTTAT 60.991 57.895 19.59 0.00 44.19 1.73
831 832 1.066430 TCAGCAGCCGGGTTTAAGTAG 60.066 52.381 1.64 0.00 0.00 2.57
839 840 2.676342 CCGGGTTTAAGTAGACATGTGC 59.324 50.000 1.15 0.00 0.00 4.57
847 848 3.232213 AGTAGACATGTGCGTACCTTG 57.768 47.619 1.15 1.60 0.00 3.61
898 906 1.813513 ATCACCAGACGAGCCTTTTG 58.186 50.000 0.00 0.00 0.00 2.44
927 935 3.876589 TTCCCAGCTTCCGACGCAC 62.877 63.158 0.00 0.00 0.00 5.34
995 1003 2.368221 CCAATTTGGCAAGGAAACTGGA 59.632 45.455 1.71 0.00 42.68 3.86
1005 1013 2.876581 AGGAAACTGGAAACCATGGAC 58.123 47.619 21.47 9.21 41.13 4.02
1006 1014 1.539827 GGAAACTGGAAACCATGGACG 59.460 52.381 21.47 2.06 30.82 4.79
1009 1017 0.889186 ACTGGAAACCATGGACGTGC 60.889 55.000 21.47 8.66 30.82 5.34
1010 1018 0.606401 CTGGAAACCATGGACGTGCT 60.606 55.000 21.47 0.00 30.82 4.40
1011 1019 0.605319 TGGAAACCATGGACGTGCTC 60.605 55.000 21.47 4.96 0.00 4.26
1167 1178 4.547671 TCTCGGTCTATGGGATCTTCTTT 58.452 43.478 0.00 0.00 0.00 2.52
1299 1310 4.023980 CAGACTACCACCATCTGGAAGTA 58.976 47.826 2.55 3.50 43.95 2.24
1300 1311 4.651503 CAGACTACCACCATCTGGAAGTAT 59.348 45.833 2.55 0.00 43.95 2.12
1487 1498 4.527038 TGTGTTTTCGATCCCTAGAGTCTT 59.473 41.667 0.00 0.00 0.00 3.01
1499 1510 0.390860 AGAGTCTTGCGCAGAACTGT 59.609 50.000 25.63 20.45 31.28 3.55
1554 1565 2.954868 CCATCGCCGTACACGCTC 60.955 66.667 0.00 0.00 38.18 5.03
1641 1652 1.112113 CCACACGGACTACCATAGCT 58.888 55.000 0.00 0.00 35.59 3.32
1644 1655 2.362397 CACACGGACTACCATAGCTGAT 59.638 50.000 0.00 0.00 35.59 2.90
1668 1679 1.633774 ACTTCTCTCCTCGGAAGCAA 58.366 50.000 0.00 0.00 41.64 3.91
1804 1815 3.006967 CCCTCCTCCATCACGGTTTATAG 59.993 52.174 0.00 0.00 35.57 1.31
1820 1831 0.810031 ATAGGGCATGTGCGTCGTTC 60.810 55.000 0.00 0.00 43.26 3.95
1823 1834 0.810031 GGGCATGTGCGTCGTTCTAT 60.810 55.000 0.00 0.00 43.26 1.98
1897 1911 5.121611 TCATTTGTGCAGTATAACCTTGTCG 59.878 40.000 0.00 0.00 0.00 4.35
1979 1993 3.716872 TCTCTACTTGGGGAAATCCATCC 59.283 47.826 1.22 0.00 36.58 3.51
2168 2191 4.893608 ACTTTGGACTTTGCAAAACACTT 58.106 34.783 13.84 0.00 37.24 3.16
2169 2192 4.929211 ACTTTGGACTTTGCAAAACACTTC 59.071 37.500 13.84 4.85 37.24 3.01
2170 2193 3.518634 TGGACTTTGCAAAACACTTCC 57.481 42.857 13.84 13.28 0.00 3.46
2171 2194 3.096092 TGGACTTTGCAAAACACTTCCT 58.904 40.909 13.84 0.00 0.00 3.36
2172 2195 4.274147 TGGACTTTGCAAAACACTTCCTA 58.726 39.130 13.84 3.40 0.00 2.94
2173 2196 4.097286 TGGACTTTGCAAAACACTTCCTAC 59.903 41.667 13.84 0.00 0.00 3.18
2179 2202 2.614983 GCAAAACACTTCCTACGAACCA 59.385 45.455 0.00 0.00 0.00 3.67
2217 2240 0.465705 GAATGGGATCCTGACAGCGA 59.534 55.000 12.58 0.00 0.00 4.93
2547 2591 5.276726 GGAGTATCGGCGTTGACTAATTTTC 60.277 44.000 6.85 0.00 34.37 2.29
2570 2614 7.086685 TCTGTTCCCTACCTTTTCTTGTATT 57.913 36.000 0.00 0.00 0.00 1.89
2746 3082 4.213270 TGTGTGCACTGTAGTTTAATCAGC 59.787 41.667 19.41 0.00 33.12 4.26
2747 3083 4.213270 GTGTGCACTGTAGTTTAATCAGCA 59.787 41.667 19.41 0.00 33.12 4.41
2748 3084 4.819088 TGTGCACTGTAGTTTAATCAGCAA 59.181 37.500 19.41 0.00 33.12 3.91
2750 3086 4.819088 TGCACTGTAGTTTAATCAGCAACA 59.181 37.500 0.00 0.00 33.12 3.33
2751 3087 5.049474 TGCACTGTAGTTTAATCAGCAACAG 60.049 40.000 0.00 0.00 38.97 3.16
2781 3117 2.027460 GGGCGTGTTTGGTTGCTG 59.973 61.111 0.00 0.00 0.00 4.41
2797 3133 1.970917 GCTGGCATGGTCGTTTCTCG 61.971 60.000 0.00 0.00 41.41 4.04
2802 3138 1.375523 ATGGTCGTTTCTCGCACCC 60.376 57.895 0.00 0.00 38.22 4.61
2803 3139 2.029964 GGTCGTTTCTCGCACCCA 59.970 61.111 0.00 0.00 39.67 4.51
2805 3141 1.568025 GTCGTTTCTCGCACCCAAC 59.432 57.895 0.00 0.00 39.67 3.77
2810 3147 3.758973 TTCTCGCACCCAACGGCAA 62.759 57.895 0.00 0.00 0.00 4.52
2820 3157 1.184970 CCAACGGCAAGGATTTGGGT 61.185 55.000 0.00 0.00 35.76 4.51
2832 3169 2.131972 GATTTGGGTCGTTTGGTTTGC 58.868 47.619 0.00 0.00 0.00 3.68
2837 3174 0.030235 GGTCGTTTGGTTTGCTGTCC 59.970 55.000 0.00 0.00 0.00 4.02
2842 3179 0.459489 TTTGGTTTGCTGTCCTGCAC 59.541 50.000 0.00 0.00 43.20 4.57
2848 3185 0.955428 TTGCTGTCCTGCACGGAATC 60.955 55.000 6.48 0.00 45.32 2.52
2865 3202 0.723414 ATCTTTGCATCGCACGAGTG 59.277 50.000 0.00 0.00 38.71 3.51
2874 3211 1.573026 TCGCACGAGTGTTAAAGCAA 58.427 45.000 5.07 0.00 0.00 3.91
2898 3235 1.704641 AAAGTTGGCCTTCTGGGAAC 58.295 50.000 3.32 0.00 37.23 3.62
2902 3239 2.034221 GGCCTTCTGGGAACGCTT 59.966 61.111 0.00 0.00 37.23 4.68
2921 3258 0.674581 TGATCCCAGCGTTCTTGCAG 60.675 55.000 0.00 0.00 37.31 4.41
2947 3284 1.527433 GCCCTGGTGAGCCAAAAGTC 61.527 60.000 0.00 0.00 45.51 3.01
2951 3288 0.534203 TGGTGAGCCAAAAGTCGGTC 60.534 55.000 0.00 0.00 42.83 4.79
3011 3364 1.597742 CATAAATCCCCTCACCGCTG 58.402 55.000 0.00 0.00 0.00 5.18
3028 3381 3.386237 GCTCTCCCACCGCTCACT 61.386 66.667 0.00 0.00 0.00 3.41
3030 3383 3.057547 CTCTCCCACCGCTCACTCG 62.058 68.421 0.00 0.00 0.00 4.18
3038 3391 3.764466 CGCTCACTCGCCCCTTCT 61.764 66.667 0.00 0.00 0.00 2.85
3044 3397 0.741915 CACTCGCCCCTTCTAGAGAC 59.258 60.000 0.00 0.00 34.98 3.36
3047 3400 2.816012 GCCCCTTCTAGAGACGCC 59.184 66.667 0.00 0.00 0.00 5.68
3055 3408 3.223435 CTTCTAGAGACGCCATTCCCTA 58.777 50.000 0.00 0.00 0.00 3.53
3072 3425 1.231221 CTATCTCCTCTCACCGACGG 58.769 60.000 13.61 13.61 0.00 4.79
3118 3471 3.564644 CGGATTACACCATCTCGTACTCT 59.435 47.826 0.00 0.00 0.00 3.24
3119 3472 4.554919 CGGATTACACCATCTCGTACTCTG 60.555 50.000 0.00 0.00 0.00 3.35
3123 3476 2.263077 CACCATCTCGTACTCTGTTGC 58.737 52.381 0.00 0.00 0.00 4.17
3139 3492 0.891373 TTGCCTCTCTCCTCTCAACG 59.109 55.000 0.00 0.00 0.00 4.10
3140 3493 0.967887 TGCCTCTCTCCTCTCAACGG 60.968 60.000 0.00 0.00 0.00 4.44
3161 3514 2.348660 CGTACGTTAGGAAATTGGCCA 58.651 47.619 0.00 0.00 0.00 5.36
3163 3516 3.001939 CGTACGTTAGGAAATTGGCCATC 59.998 47.826 6.09 0.00 0.00 3.51
3182 3535 0.032678 CATCTTCTACGCCGCCATCT 59.967 55.000 0.00 0.00 0.00 2.90
3188 3541 0.946221 CTACGCCGCCATCTCATTCC 60.946 60.000 0.00 0.00 0.00 3.01
3192 3545 3.341043 CGCCATCTCATTCCGCCG 61.341 66.667 0.00 0.00 0.00 6.46
3216 3569 1.153369 CCTCGACGGCATCAATGGT 60.153 57.895 0.00 0.00 0.00 3.55
3228 3581 3.346315 CATCAATGGTGGTAAGTGCTCA 58.654 45.455 0.00 0.00 0.00 4.26
3242 3595 4.508551 AGTGCTCAATCATCCCACAATA 57.491 40.909 0.00 0.00 0.00 1.90
3250 3603 4.595762 ATCATCCCACAATATTTGCTGC 57.404 40.909 0.00 0.00 0.00 5.25
3268 3621 4.080919 TGCTGCTATGGTAGATCTGTTTGT 60.081 41.667 5.18 0.00 0.00 2.83
3280 3633 5.670485 AGATCTGTTTGTATCGGCACATTA 58.330 37.500 0.00 0.00 0.00 1.90
3282 3635 4.570930 TCTGTTTGTATCGGCACATTACA 58.429 39.130 0.00 0.00 0.00 2.41
3296 3649 7.120579 TCGGCACATTACATGTCTAATTTCTTT 59.879 33.333 0.00 0.00 42.70 2.52
3337 3690 0.586802 GCTAGGGCGGATTTTAAGCG 59.413 55.000 0.00 0.00 0.00 4.68
3341 3694 1.018910 GGGCGGATTTTAAGCGCTAA 58.981 50.000 12.05 0.60 40.11 3.09
3352 3705 5.761165 TTTAAGCGCTAAGGTTCTTGTTT 57.239 34.783 12.05 0.00 41.37 2.83
3363 3716 3.070590 AGGTTCTTGTTTGTACGGCTAGT 59.929 43.478 0.00 0.00 0.00 2.57
3364 3717 3.185797 GGTTCTTGTTTGTACGGCTAGTG 59.814 47.826 0.00 0.00 0.00 2.74
3367 3720 4.053295 TCTTGTTTGTACGGCTAGTGTTC 58.947 43.478 0.00 0.00 0.00 3.18
3374 3727 1.779569 ACGGCTAGTGTTCTTGTTCG 58.220 50.000 0.00 0.00 0.00 3.95
3375 3728 1.068127 ACGGCTAGTGTTCTTGTTCGT 59.932 47.619 0.00 0.00 0.00 3.85
3376 3729 2.294233 ACGGCTAGTGTTCTTGTTCGTA 59.706 45.455 0.00 0.00 32.04 3.43
3377 3730 2.915463 CGGCTAGTGTTCTTGTTCGTAG 59.085 50.000 0.00 0.00 0.00 3.51
3378 3731 3.251571 GGCTAGTGTTCTTGTTCGTAGG 58.748 50.000 0.00 0.00 0.00 3.18
3379 3732 3.251571 GCTAGTGTTCTTGTTCGTAGGG 58.748 50.000 0.00 0.00 0.00 3.53
3380 3733 2.165319 AGTGTTCTTGTTCGTAGGGC 57.835 50.000 0.00 0.00 0.00 5.19
3381 3734 1.692519 AGTGTTCTTGTTCGTAGGGCT 59.307 47.619 0.00 0.00 0.00 5.19
3382 3735 2.895404 AGTGTTCTTGTTCGTAGGGCTA 59.105 45.455 0.00 0.00 0.00 3.93
3383 3736 3.056749 AGTGTTCTTGTTCGTAGGGCTAG 60.057 47.826 0.00 0.00 0.00 3.42
3384 3737 2.269172 GTTCTTGTTCGTAGGGCTAGC 58.731 52.381 6.04 6.04 0.00 3.42
3385 3738 0.454600 TCTTGTTCGTAGGGCTAGCG 59.545 55.000 9.00 0.00 0.00 4.26
3386 3739 0.172803 CTTGTTCGTAGGGCTAGCGT 59.827 55.000 9.00 0.51 0.00 5.07
3387 3740 0.604578 TTGTTCGTAGGGCTAGCGTT 59.395 50.000 9.00 1.43 0.00 4.84
3388 3741 0.604578 TGTTCGTAGGGCTAGCGTTT 59.395 50.000 9.00 0.00 0.00 3.60
3389 3742 1.001181 TGTTCGTAGGGCTAGCGTTTT 59.999 47.619 9.00 0.00 0.00 2.43
3390 3743 2.071540 GTTCGTAGGGCTAGCGTTTTT 58.928 47.619 9.00 0.00 0.00 1.94
3391 3744 1.717194 TCGTAGGGCTAGCGTTTTTG 58.283 50.000 9.00 0.00 0.00 2.44
3392 3745 1.001181 TCGTAGGGCTAGCGTTTTTGT 59.999 47.619 9.00 0.00 0.00 2.83
3393 3746 1.802365 CGTAGGGCTAGCGTTTTTGTT 59.198 47.619 9.00 0.00 0.00 2.83
3394 3747 2.159747 CGTAGGGCTAGCGTTTTTGTTC 60.160 50.000 9.00 0.00 0.00 3.18
3395 3748 2.271944 AGGGCTAGCGTTTTTGTTCT 57.728 45.000 9.00 0.00 0.00 3.01
3396 3749 2.583143 AGGGCTAGCGTTTTTGTTCTT 58.417 42.857 9.00 0.00 0.00 2.52
3397 3750 2.552743 AGGGCTAGCGTTTTTGTTCTTC 59.447 45.455 9.00 0.00 0.00 2.87
3398 3751 2.552743 GGGCTAGCGTTTTTGTTCTTCT 59.447 45.455 9.00 0.00 0.00 2.85
3399 3752 3.004419 GGGCTAGCGTTTTTGTTCTTCTT 59.996 43.478 9.00 0.00 0.00 2.52
3400 3753 3.975035 GGCTAGCGTTTTTGTTCTTCTTG 59.025 43.478 9.00 0.00 0.00 3.02
3401 3754 4.497507 GGCTAGCGTTTTTGTTCTTCTTGT 60.498 41.667 9.00 0.00 0.00 3.16
3402 3755 5.034797 GCTAGCGTTTTTGTTCTTCTTGTT 58.965 37.500 0.00 0.00 0.00 2.83
3403 3756 5.171516 GCTAGCGTTTTTGTTCTTCTTGTTC 59.828 40.000 0.00 0.00 0.00 3.18
3404 3757 4.095610 AGCGTTTTTGTTCTTCTTGTTCG 58.904 39.130 0.00 0.00 0.00 3.95
3405 3758 3.849708 GCGTTTTTGTTCTTCTTGTTCGT 59.150 39.130 0.00 0.00 0.00 3.85
3406 3759 4.028750 GCGTTTTTGTTCTTCTTGTTCGTC 60.029 41.667 0.00 0.00 0.00 4.20
3407 3760 5.083389 CGTTTTTGTTCTTCTTGTTCGTCA 58.917 37.500 0.00 0.00 0.00 4.35
3408 3761 5.737290 CGTTTTTGTTCTTCTTGTTCGTCAT 59.263 36.000 0.00 0.00 0.00 3.06
3409 3762 6.250527 CGTTTTTGTTCTTCTTGTTCGTCATT 59.749 34.615 0.00 0.00 0.00 2.57
3410 3763 7.511506 CGTTTTTGTTCTTCTTGTTCGTCATTC 60.512 37.037 0.00 0.00 0.00 2.67
3411 3764 6.677781 TTTGTTCTTCTTGTTCGTCATTCT 57.322 33.333 0.00 0.00 0.00 2.40
3412 3765 5.907197 TGTTCTTCTTGTTCGTCATTCTC 57.093 39.130 0.00 0.00 0.00 2.87
3413 3766 5.356426 TGTTCTTCTTGTTCGTCATTCTCA 58.644 37.500 0.00 0.00 0.00 3.27
3414 3767 5.991606 TGTTCTTCTTGTTCGTCATTCTCAT 59.008 36.000 0.00 0.00 0.00 2.90
3415 3768 7.151976 TGTTCTTCTTGTTCGTCATTCTCATA 58.848 34.615 0.00 0.00 0.00 2.15
3416 3769 7.819415 TGTTCTTCTTGTTCGTCATTCTCATAT 59.181 33.333 0.00 0.00 0.00 1.78
3417 3770 7.761651 TCTTCTTGTTCGTCATTCTCATATG 57.238 36.000 0.00 0.00 0.00 1.78
3418 3771 6.758416 TCTTCTTGTTCGTCATTCTCATATGG 59.242 38.462 2.13 0.00 0.00 2.74
3419 3772 5.359756 TCTTGTTCGTCATTCTCATATGGG 58.640 41.667 2.13 0.00 0.00 4.00
3420 3773 4.071961 TGTTCGTCATTCTCATATGGGG 57.928 45.455 1.90 0.00 0.00 4.96
3421 3774 3.454447 TGTTCGTCATTCTCATATGGGGT 59.546 43.478 1.90 0.00 0.00 4.95
3422 3775 4.080582 TGTTCGTCATTCTCATATGGGGTT 60.081 41.667 1.90 0.00 0.00 4.11
3423 3776 4.336889 TCGTCATTCTCATATGGGGTTC 57.663 45.455 1.90 0.00 0.00 3.62
3424 3777 3.709141 TCGTCATTCTCATATGGGGTTCA 59.291 43.478 1.90 0.00 0.00 3.18
3425 3778 4.347876 TCGTCATTCTCATATGGGGTTCAT 59.652 41.667 1.90 0.00 39.78 2.57
3426 3779 5.542251 TCGTCATTCTCATATGGGGTTCATA 59.458 40.000 1.90 0.00 42.00 2.15
3427 3780 5.871524 CGTCATTCTCATATGGGGTTCATAG 59.128 44.000 1.90 0.00 41.20 2.23
3428 3781 6.519043 CGTCATTCTCATATGGGGTTCATAGT 60.519 42.308 1.90 0.00 41.20 2.12
3429 3782 7.227156 GTCATTCTCATATGGGGTTCATAGTT 58.773 38.462 1.90 0.00 41.20 2.24
3430 3783 8.375506 GTCATTCTCATATGGGGTTCATAGTTA 58.624 37.037 1.90 0.00 41.20 2.24
3431 3784 8.597167 TCATTCTCATATGGGGTTCATAGTTAG 58.403 37.037 1.90 0.00 41.20 2.34
3432 3785 6.360370 TCTCATATGGGGTTCATAGTTAGC 57.640 41.667 1.90 0.00 41.20 3.09
3433 3786 5.843969 TCTCATATGGGGTTCATAGTTAGCA 59.156 40.000 1.90 0.00 41.20 3.49
3434 3787 6.014242 TCTCATATGGGGTTCATAGTTAGCAG 60.014 42.308 1.90 0.00 41.20 4.24
3435 3788 5.843969 TCATATGGGGTTCATAGTTAGCAGA 59.156 40.000 2.13 0.00 41.20 4.26
3436 3789 6.501805 TCATATGGGGTTCATAGTTAGCAGAT 59.498 38.462 2.13 0.00 41.20 2.90
3437 3790 4.689612 TGGGGTTCATAGTTAGCAGATC 57.310 45.455 0.00 0.00 0.00 2.75
3438 3791 4.298626 TGGGGTTCATAGTTAGCAGATCT 58.701 43.478 0.00 0.00 0.00 2.75
3439 3792 4.101585 TGGGGTTCATAGTTAGCAGATCTG 59.898 45.833 18.84 18.84 0.00 2.90
3440 3793 4.503991 GGGGTTCATAGTTAGCAGATCTGG 60.504 50.000 23.89 6.34 0.00 3.86
3441 3794 4.061596 GGTTCATAGTTAGCAGATCTGGC 58.938 47.826 23.89 15.58 0.00 4.85
3442 3795 4.443457 GGTTCATAGTTAGCAGATCTGGCA 60.443 45.833 23.89 5.32 0.00 4.92
3443 3796 4.327982 TCATAGTTAGCAGATCTGGCAC 57.672 45.455 23.89 7.74 0.00 5.01
3444 3797 3.963374 TCATAGTTAGCAGATCTGGCACT 59.037 43.478 23.89 14.59 0.00 4.40
3445 3798 5.140454 TCATAGTTAGCAGATCTGGCACTA 58.860 41.667 23.89 17.77 0.00 2.74
3446 3799 5.598417 TCATAGTTAGCAGATCTGGCACTAA 59.402 40.000 23.89 18.17 0.00 2.24
3447 3800 4.826274 AGTTAGCAGATCTGGCACTAAA 57.174 40.909 23.89 7.29 0.00 1.85
3448 3801 5.365021 AGTTAGCAGATCTGGCACTAAAT 57.635 39.130 23.89 17.39 0.00 1.40
3449 3802 5.749462 AGTTAGCAGATCTGGCACTAAATT 58.251 37.500 23.89 11.30 0.00 1.82
3450 3803 5.819901 AGTTAGCAGATCTGGCACTAAATTC 59.180 40.000 23.89 10.81 0.00 2.17
3451 3804 3.549794 AGCAGATCTGGCACTAAATTCC 58.450 45.455 23.89 2.86 0.00 3.01
3452 3805 3.201708 AGCAGATCTGGCACTAAATTCCT 59.798 43.478 23.89 5.16 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.762933 ACAAGAAAATTTGCAGTTTATGTGTAT 57.237 25.926 0.00 0.00 0.00 2.29
5 6 9.243637 GACAAGAAAATTTGCAGTTTATGTGTA 57.756 29.630 0.00 0.00 0.00 2.90
6 7 7.981225 AGACAAGAAAATTTGCAGTTTATGTGT 59.019 29.630 0.00 10.37 0.00 3.72
7 8 8.356533 AGACAAGAAAATTTGCAGTTTATGTG 57.643 30.769 0.00 8.36 0.00 3.21
8 9 8.947055 AAGACAAGAAAATTTGCAGTTTATGT 57.053 26.923 0.00 6.16 0.00 2.29
12 13 9.768662 ATCATAAGACAAGAAAATTTGCAGTTT 57.231 25.926 0.00 0.00 0.00 2.66
13 14 9.415544 GATCATAAGACAAGAAAATTTGCAGTT 57.584 29.630 0.00 0.00 0.00 3.16
14 15 8.800332 AGATCATAAGACAAGAAAATTTGCAGT 58.200 29.630 0.00 0.00 0.00 4.40
120 121 9.406828 CGAGGTAATCTTACGATCATTTCATAA 57.593 33.333 0.00 0.00 34.50 1.90
121 122 8.027189 CCGAGGTAATCTTACGATCATTTCATA 58.973 37.037 0.00 0.00 34.50 2.15
122 123 6.868864 CCGAGGTAATCTTACGATCATTTCAT 59.131 38.462 0.00 0.00 34.50 2.57
123 124 6.040054 TCCGAGGTAATCTTACGATCATTTCA 59.960 38.462 0.00 0.00 34.50 2.69
124 125 6.444633 TCCGAGGTAATCTTACGATCATTTC 58.555 40.000 0.00 0.00 34.50 2.17
125 126 6.401047 TCCGAGGTAATCTTACGATCATTT 57.599 37.500 0.00 0.00 34.50 2.32
126 127 6.208797 TCATCCGAGGTAATCTTACGATCATT 59.791 38.462 0.00 0.00 34.50 2.57
127 128 5.710567 TCATCCGAGGTAATCTTACGATCAT 59.289 40.000 0.00 0.00 34.50 2.45
128 129 5.067954 TCATCCGAGGTAATCTTACGATCA 58.932 41.667 0.00 0.00 34.50 2.92
129 130 5.624344 TCATCCGAGGTAATCTTACGATC 57.376 43.478 0.00 0.00 34.50 3.69
130 131 5.768662 TCTTCATCCGAGGTAATCTTACGAT 59.231 40.000 0.00 0.00 34.50 3.73
131 132 5.128205 TCTTCATCCGAGGTAATCTTACGA 58.872 41.667 0.00 0.00 34.50 3.43
132 133 5.434352 TCTTCATCCGAGGTAATCTTACG 57.566 43.478 0.00 0.00 34.50 3.18
133 134 9.194271 GTAATTCTTCATCCGAGGTAATCTTAC 57.806 37.037 0.00 0.00 0.00 2.34
134 135 8.080417 CGTAATTCTTCATCCGAGGTAATCTTA 58.920 37.037 0.00 0.00 0.00 2.10
135 136 6.924060 CGTAATTCTTCATCCGAGGTAATCTT 59.076 38.462 0.00 0.00 0.00 2.40
136 137 6.040616 ACGTAATTCTTCATCCGAGGTAATCT 59.959 38.462 0.00 0.00 0.00 2.40
137 138 6.214399 ACGTAATTCTTCATCCGAGGTAATC 58.786 40.000 0.00 0.00 0.00 1.75
138 139 6.158023 ACGTAATTCTTCATCCGAGGTAAT 57.842 37.500 0.00 0.00 0.00 1.89
139 140 5.587388 ACGTAATTCTTCATCCGAGGTAA 57.413 39.130 0.00 0.00 0.00 2.85
140 141 6.889301 ATACGTAATTCTTCATCCGAGGTA 57.111 37.500 0.00 0.00 0.00 3.08
141 142 5.786264 ATACGTAATTCTTCATCCGAGGT 57.214 39.130 0.00 0.00 0.00 3.85
610 611 9.952030 TGTCTTGTATTCCAAATAGTTCATGTA 57.048 29.630 0.00 0.00 31.20 2.29
611 612 8.862325 TGTCTTGTATTCCAAATAGTTCATGT 57.138 30.769 0.00 0.00 31.20 3.21
612 613 9.778993 CTTGTCTTGTATTCCAAATAGTTCATG 57.221 33.333 0.00 0.00 31.20 3.07
613 614 8.462016 GCTTGTCTTGTATTCCAAATAGTTCAT 58.538 33.333 0.00 0.00 31.20 2.57
614 615 7.094377 GGCTTGTCTTGTATTCCAAATAGTTCA 60.094 37.037 0.00 0.00 31.20 3.18
615 616 7.094377 TGGCTTGTCTTGTATTCCAAATAGTTC 60.094 37.037 0.00 0.00 31.20 3.01
616 617 6.719370 TGGCTTGTCTTGTATTCCAAATAGTT 59.281 34.615 0.00 0.00 31.20 2.24
617 618 6.245408 TGGCTTGTCTTGTATTCCAAATAGT 58.755 36.000 0.00 0.00 31.20 2.12
618 619 6.599244 TCTGGCTTGTCTTGTATTCCAAATAG 59.401 38.462 0.00 0.00 31.20 1.73
619 620 6.480763 TCTGGCTTGTCTTGTATTCCAAATA 58.519 36.000 0.00 0.00 31.20 1.40
620 621 5.324409 TCTGGCTTGTCTTGTATTCCAAAT 58.676 37.500 0.00 0.00 31.20 2.32
621 622 4.724399 TCTGGCTTGTCTTGTATTCCAAA 58.276 39.130 0.00 0.00 31.20 3.28
622 623 4.365514 TCTGGCTTGTCTTGTATTCCAA 57.634 40.909 0.00 0.00 0.00 3.53
623 624 4.365514 TTCTGGCTTGTCTTGTATTCCA 57.634 40.909 0.00 0.00 0.00 3.53
624 625 7.573968 AATATTCTGGCTTGTCTTGTATTCC 57.426 36.000 0.00 0.00 0.00 3.01
625 626 9.508567 GAAAATATTCTGGCTTGTCTTGTATTC 57.491 33.333 0.00 0.00 32.57 1.75
626 627 9.247861 AGAAAATATTCTGGCTTGTCTTGTATT 57.752 29.630 0.00 0.00 44.25 1.89
627 628 8.814038 AGAAAATATTCTGGCTTGTCTTGTAT 57.186 30.769 0.00 0.00 44.25 2.29
628 629 9.383519 CTAGAAAATATTCTGGCTTGTCTTGTA 57.616 33.333 1.47 0.00 45.47 2.41
629 630 7.885399 ACTAGAAAATATTCTGGCTTGTCTTGT 59.115 33.333 0.00 0.00 45.29 3.16
630 631 8.273780 ACTAGAAAATATTCTGGCTTGTCTTG 57.726 34.615 0.00 0.00 45.29 3.02
631 632 8.325046 AGACTAGAAAATATTCTGGCTTGTCTT 58.675 33.333 0.00 0.00 45.29 3.01
632 633 7.856415 AGACTAGAAAATATTCTGGCTTGTCT 58.144 34.615 0.00 13.03 45.29 3.41
633 634 9.771534 ATAGACTAGAAAATATTCTGGCTTGTC 57.228 33.333 0.00 0.00 45.29 3.18
634 635 9.771534 GATAGACTAGAAAATATTCTGGCTTGT 57.228 33.333 0.00 0.00 45.29 3.16
635 636 9.213799 GGATAGACTAGAAAATATTCTGGCTTG 57.786 37.037 0.00 0.00 45.29 4.01
636 637 9.165057 AGGATAGACTAGAAAATATTCTGGCTT 57.835 33.333 0.00 0.00 45.29 4.35
637 638 8.734593 AGGATAGACTAGAAAATATTCTGGCT 57.265 34.615 0.00 2.50 45.29 4.75
650 651 9.877222 TGTATTGGAAACATAGGATAGACTAGA 57.123 33.333 0.00 0.00 42.32 2.43
654 655 9.778741 TGATTGTATTGGAAACATAGGATAGAC 57.221 33.333 0.00 0.00 42.32 2.59
655 656 9.778741 GTGATTGTATTGGAAACATAGGATAGA 57.221 33.333 0.00 0.00 42.32 1.98
656 657 9.003658 GGTGATTGTATTGGAAACATAGGATAG 57.996 37.037 0.00 0.00 42.32 2.08
657 658 8.723365 AGGTGATTGTATTGGAAACATAGGATA 58.277 33.333 0.00 0.00 42.32 2.59
658 659 7.586349 AGGTGATTGTATTGGAAACATAGGAT 58.414 34.615 0.00 0.00 42.32 3.24
659 660 6.969043 AGGTGATTGTATTGGAAACATAGGA 58.031 36.000 0.00 0.00 42.32 2.94
660 661 8.746052 TTAGGTGATTGTATTGGAAACATAGG 57.254 34.615 0.00 0.00 42.32 2.57
662 663 8.670135 CGTTTAGGTGATTGTATTGGAAACATA 58.330 33.333 0.00 0.00 42.32 2.29
663 664 7.392113 TCGTTTAGGTGATTGTATTGGAAACAT 59.608 33.333 0.00 0.00 42.32 2.71
664 665 6.711194 TCGTTTAGGTGATTGTATTGGAAACA 59.289 34.615 0.00 0.00 39.83 2.83
665 666 7.136289 TCGTTTAGGTGATTGTATTGGAAAC 57.864 36.000 0.00 0.00 0.00 2.78
666 667 7.392113 ACATCGTTTAGGTGATTGTATTGGAAA 59.608 33.333 0.00 0.00 34.34 3.13
667 668 6.882140 ACATCGTTTAGGTGATTGTATTGGAA 59.118 34.615 0.00 0.00 34.34 3.53
668 669 6.411376 ACATCGTTTAGGTGATTGTATTGGA 58.589 36.000 0.00 0.00 34.34 3.53
669 670 6.677781 ACATCGTTTAGGTGATTGTATTGG 57.322 37.500 0.00 0.00 34.34 3.16
670 671 9.040939 TCATACATCGTTTAGGTGATTGTATTG 57.959 33.333 0.00 0.00 34.34 1.90
671 672 9.607988 TTCATACATCGTTTAGGTGATTGTATT 57.392 29.630 0.00 0.00 34.34 1.89
672 673 9.607988 TTTCATACATCGTTTAGGTGATTGTAT 57.392 29.630 0.00 0.00 34.34 2.29
673 674 8.875803 GTTTCATACATCGTTTAGGTGATTGTA 58.124 33.333 0.00 0.00 34.34 2.41
674 675 7.389330 TGTTTCATACATCGTTTAGGTGATTGT 59.611 33.333 0.00 0.00 34.34 2.71
675 676 7.747888 TGTTTCATACATCGTTTAGGTGATTG 58.252 34.615 0.00 0.00 34.34 2.67
676 677 7.606456 ACTGTTTCATACATCGTTTAGGTGATT 59.394 33.333 0.00 0.00 35.85 2.57
677 678 7.103641 ACTGTTTCATACATCGTTTAGGTGAT 58.896 34.615 0.00 0.00 35.85 3.06
678 679 6.460781 ACTGTTTCATACATCGTTTAGGTGA 58.539 36.000 0.00 0.00 35.85 4.02
679 680 6.721571 ACTGTTTCATACATCGTTTAGGTG 57.278 37.500 0.00 0.00 35.85 4.00
680 681 9.095065 GATTACTGTTTCATACATCGTTTAGGT 57.905 33.333 0.00 0.00 35.85 3.08
681 682 8.266682 CGATTACTGTTTCATACATCGTTTAGG 58.733 37.037 0.00 0.00 35.85 2.69
682 683 8.804743 ACGATTACTGTTTCATACATCGTTTAG 58.195 33.333 0.00 0.00 42.79 1.85
683 684 8.692110 ACGATTACTGTTTCATACATCGTTTA 57.308 30.769 0.00 0.00 42.79 2.01
684 685 7.591006 ACGATTACTGTTTCATACATCGTTT 57.409 32.000 0.00 0.00 42.79 3.60
685 686 8.867112 ATACGATTACTGTTTCATACATCGTT 57.133 30.769 9.33 0.00 42.79 3.85
686 687 7.594015 GGATACGATTACTGTTTCATACATCGT 59.406 37.037 9.06 9.06 45.50 3.73
687 688 7.808381 AGGATACGATTACTGTTTCATACATCG 59.192 37.037 0.00 0.00 39.94 3.84
704 705 9.930693 GAAGTCAAGGAAAATATAGGATACGAT 57.069 33.333 0.00 0.00 46.39 3.73
705 706 8.080417 CGAAGTCAAGGAAAATATAGGATACGA 58.920 37.037 0.00 0.00 46.39 3.43
706 707 7.866393 ACGAAGTCAAGGAAAATATAGGATACG 59.134 37.037 0.00 0.00 29.74 3.06
707 708 9.543783 AACGAAGTCAAGGAAAATATAGGATAC 57.456 33.333 0.00 0.00 45.00 2.24
708 709 9.760077 GAACGAAGTCAAGGAAAATATAGGATA 57.240 33.333 0.00 0.00 45.00 2.59
709 710 7.438459 CGAACGAAGTCAAGGAAAATATAGGAT 59.562 37.037 0.00 0.00 45.00 3.24
710 711 6.755141 CGAACGAAGTCAAGGAAAATATAGGA 59.245 38.462 0.00 0.00 45.00 2.94
711 712 6.509677 GCGAACGAAGTCAAGGAAAATATAGG 60.510 42.308 0.00 0.00 45.00 2.57
712 713 6.411652 GCGAACGAAGTCAAGGAAAATATAG 58.588 40.000 0.00 0.00 45.00 1.31
713 714 5.005012 CGCGAACGAAGTCAAGGAAAATATA 59.995 40.000 0.00 0.00 45.00 0.86
714 715 4.201685 CGCGAACGAAGTCAAGGAAAATAT 60.202 41.667 0.00 0.00 45.00 1.28
715 716 3.122278 CGCGAACGAAGTCAAGGAAAATA 59.878 43.478 0.00 0.00 45.00 1.40
716 717 2.096417 CGCGAACGAAGTCAAGGAAAAT 60.096 45.455 0.00 0.00 45.00 1.82
717 718 1.259507 CGCGAACGAAGTCAAGGAAAA 59.740 47.619 0.00 0.00 45.00 2.29
718 719 0.856641 CGCGAACGAAGTCAAGGAAA 59.143 50.000 0.00 0.00 45.00 3.13
719 720 0.249155 ACGCGAACGAAGTCAAGGAA 60.249 50.000 15.93 0.00 45.00 3.36
720 721 0.937699 CACGCGAACGAAGTCAAGGA 60.938 55.000 15.93 0.00 45.00 3.36
721 722 1.213094 ACACGCGAACGAAGTCAAGG 61.213 55.000 15.93 0.00 45.00 3.61
722 723 0.111704 CACACGCGAACGAAGTCAAG 60.112 55.000 15.93 0.00 45.00 3.02
723 724 0.802994 ACACACGCGAACGAAGTCAA 60.803 50.000 15.93 0.00 45.00 3.18
724 725 1.204228 GACACACGCGAACGAAGTCA 61.204 55.000 15.93 0.00 45.00 3.41
725 726 1.481683 GACACACGCGAACGAAGTC 59.518 57.895 15.93 8.08 45.00 3.01
726 727 2.290789 CGACACACGCGAACGAAGT 61.291 57.895 15.93 1.64 43.93 3.01
727 728 1.920285 CTCGACACACGCGAACGAAG 61.920 60.000 15.93 0.00 43.93 3.79
728 729 2.007114 CTCGACACACGCGAACGAA 61.007 57.895 15.93 1.08 43.93 3.85
729 730 1.830368 TACTCGACACACGCGAACGA 61.830 55.000 15.93 14.47 43.93 3.85
731 732 0.385223 ACTACTCGACACACGCGAAC 60.385 55.000 15.93 0.00 42.26 3.95
732 733 0.385098 CACTACTCGACACACGCGAA 60.385 55.000 15.93 0.00 42.26 4.70
733 734 1.205820 CACTACTCGACACACGCGA 59.794 57.895 15.93 0.00 42.26 5.87
734 735 1.058590 GACACTACTCGACACACGCG 61.059 60.000 3.53 3.53 42.26 6.01
735 736 0.728466 GGACACTACTCGACACACGC 60.728 60.000 0.00 0.00 42.26 5.34
736 737 0.452287 CGGACACTACTCGACACACG 60.452 60.000 0.00 0.00 44.09 4.49
737 738 0.590195 ACGGACACTACTCGACACAC 59.410 55.000 0.00 0.00 0.00 3.82
738 739 0.589708 CACGGACACTACTCGACACA 59.410 55.000 0.00 0.00 0.00 3.72
739 740 0.590195 ACACGGACACTACTCGACAC 59.410 55.000 0.00 0.00 0.00 3.67
740 741 1.002142 CAACACGGACACTACTCGACA 60.002 52.381 0.00 0.00 0.00 4.35
741 742 1.665161 CCAACACGGACACTACTCGAC 60.665 57.143 0.00 0.00 36.56 4.20
742 743 0.594602 CCAACACGGACACTACTCGA 59.405 55.000 0.00 0.00 36.56 4.04
743 744 0.388134 CCCAACACGGACACTACTCG 60.388 60.000 0.00 0.00 36.56 4.18
744 745 0.677842 ACCCAACACGGACACTACTC 59.322 55.000 0.00 0.00 36.56 2.59
745 746 0.391597 CACCCAACACGGACACTACT 59.608 55.000 0.00 0.00 36.56 2.57
746 747 1.226030 GCACCCAACACGGACACTAC 61.226 60.000 0.00 0.00 36.56 2.73
747 748 1.070105 GCACCCAACACGGACACTA 59.930 57.895 0.00 0.00 36.56 2.74
748 749 2.203153 GCACCCAACACGGACACT 60.203 61.111 0.00 0.00 36.56 3.55
749 750 3.645975 CGCACCCAACACGGACAC 61.646 66.667 0.00 0.00 36.56 3.67
754 755 3.645975 GACACCGCACCCAACACG 61.646 66.667 0.00 0.00 0.00 4.49
755 756 2.386064 TAGGACACCGCACCCAACAC 62.386 60.000 0.00 0.00 0.00 3.32
756 757 2.141448 TAGGACACCGCACCCAACA 61.141 57.895 0.00 0.00 0.00 3.33
757 758 1.670083 GTAGGACACCGCACCCAAC 60.670 63.158 0.00 0.00 0.00 3.77
758 759 2.141448 TGTAGGACACCGCACCCAA 61.141 57.895 0.00 0.00 0.00 4.12
759 760 2.524640 TGTAGGACACCGCACCCA 60.525 61.111 0.00 0.00 0.00 4.51
760 761 2.047560 GTGTAGGACACCGCACCC 60.048 66.667 0.00 0.00 43.05 4.61
768 769 3.687102 CACGGCCGGTGTAGGACA 61.687 66.667 31.76 0.00 40.05 4.02
785 786 2.248086 ATAAGGCGGTCCCGTCCAAC 62.248 60.000 17.37 0.00 46.20 3.77
786 787 1.991167 ATAAGGCGGTCCCGTCCAA 60.991 57.895 17.37 3.83 46.20 3.53
787 788 2.364579 ATAAGGCGGTCCCGTCCA 60.365 61.111 17.37 3.83 46.20 4.02
788 789 2.108362 CATAAGGCGGTCCCGTCC 59.892 66.667 6.72 8.73 46.20 4.79
789 790 1.227176 GACATAAGGCGGTCCCGTC 60.227 63.158 1.21 1.21 45.28 4.79
790 791 2.897972 GACATAAGGCGGTCCCGT 59.102 61.111 7.66 0.00 42.09 5.28
791 792 2.279252 CGACATAAGGCGGTCCCG 60.279 66.667 0.24 0.24 43.09 5.14
792 793 2.108362 CCGACATAAGGCGGTCCC 59.892 66.667 3.47 0.00 42.49 4.46
797 798 0.739462 TGCTGAACCGACATAAGGCG 60.739 55.000 0.00 0.00 0.00 5.52
798 799 1.009829 CTGCTGAACCGACATAAGGC 58.990 55.000 0.00 0.00 0.00 4.35
799 800 1.009829 GCTGCTGAACCGACATAAGG 58.990 55.000 0.00 0.00 0.00 2.69
800 801 1.009829 GGCTGCTGAACCGACATAAG 58.990 55.000 0.00 0.00 0.00 1.73
801 802 3.153024 GGCTGCTGAACCGACATAA 57.847 52.632 0.00 0.00 0.00 1.90
802 803 4.932789 GGCTGCTGAACCGACATA 57.067 55.556 0.00 0.00 0.00 2.29
831 832 1.508632 ACACAAGGTACGCACATGTC 58.491 50.000 0.00 0.00 0.00 3.06
898 906 0.671251 AGCTGGGAATCGATCGAGAC 59.329 55.000 23.84 17.97 0.00 3.36
927 935 0.389166 GCCGATCGAATCTGGCCTAG 60.389 60.000 18.66 0.00 40.56 3.02
995 1003 4.397348 GGAGCACGTCCATGGTTT 57.603 55.556 12.58 0.00 46.10 3.27
1006 1014 4.131088 GTCGTCGGGGAGGAGCAC 62.131 72.222 0.00 0.00 0.00 4.40
1009 1017 3.812019 CACGTCGTCGGGGAGGAG 61.812 72.222 7.05 0.00 41.85 3.69
1215 1226 3.003068 CGATTTTGTGCTCCATCTCCATC 59.997 47.826 0.00 0.00 0.00 3.51
1216 1227 2.947652 CGATTTTGTGCTCCATCTCCAT 59.052 45.455 0.00 0.00 0.00 3.41
1217 1228 2.358957 CGATTTTGTGCTCCATCTCCA 58.641 47.619 0.00 0.00 0.00 3.86
1218 1229 1.064654 GCGATTTTGTGCTCCATCTCC 59.935 52.381 0.00 0.00 0.00 3.71
1219 1230 1.064654 GGCGATTTTGTGCTCCATCTC 59.935 52.381 0.00 0.00 0.00 2.75
1220 1231 1.098050 GGCGATTTTGTGCTCCATCT 58.902 50.000 0.00 0.00 0.00 2.90
1299 1310 3.903783 CCGTTGCGGTGATCCAAT 58.096 55.556 0.00 0.00 42.73 3.16
1487 1498 0.033366 TAGCTCAACAGTTCTGCGCA 59.967 50.000 10.98 10.98 0.00 6.09
1499 1510 3.500680 GTCGGTGAATTTGGTTAGCTCAA 59.499 43.478 0.00 0.00 0.00 3.02
1554 1565 0.031585 TTGTCGAGGAGAACACGGTG 59.968 55.000 6.58 6.58 0.00 4.94
1641 1652 4.793201 TCCGAGGAGAGAAGTTGATATCA 58.207 43.478 0.00 0.00 0.00 2.15
1644 1655 3.381908 GCTTCCGAGGAGAGAAGTTGATA 59.618 47.826 0.00 0.00 41.29 2.15
1804 1815 0.810031 ATAGAACGACGCACATGCCC 60.810 55.000 0.00 0.00 37.91 5.36
1885 1899 6.040842 GGTACTTATGGGTCGACAAGGTTATA 59.959 42.308 18.91 3.59 0.00 0.98
1897 1911 5.123936 GGAATCACTTGGTACTTATGGGTC 58.876 45.833 0.00 0.00 0.00 4.46
1979 1993 2.049526 TGCACAGTAGACGCCGTG 60.050 61.111 0.00 0.00 0.00 4.94
2168 2191 1.219664 CCGCCATTGGTTCGTAGGA 59.780 57.895 4.26 0.00 0.00 2.94
2169 2192 0.810031 CTCCGCCATTGGTTCGTAGG 60.810 60.000 4.26 0.00 0.00 3.18
2170 2193 1.429148 GCTCCGCCATTGGTTCGTAG 61.429 60.000 4.26 0.00 0.00 3.51
2171 2194 1.448893 GCTCCGCCATTGGTTCGTA 60.449 57.895 4.26 0.00 0.00 3.43
2172 2195 2.746277 GCTCCGCCATTGGTTCGT 60.746 61.111 4.26 0.00 0.00 3.85
2173 2196 2.745884 TGCTCCGCCATTGGTTCG 60.746 61.111 4.26 0.00 0.00 3.95
2179 2202 2.170166 TCAAATTTCTGCTCCGCCATT 58.830 42.857 0.00 0.00 0.00 3.16
2217 2240 2.619074 GCCTCAGCTTCAAGGGTAATGT 60.619 50.000 8.30 0.00 35.50 2.71
2547 2591 7.761038 AAATACAAGAAAAGGTAGGGAACAG 57.239 36.000 0.00 0.00 0.00 3.16
2781 3117 2.032634 TGCGAGAAACGACCATGCC 61.033 57.895 0.00 0.00 45.77 4.40
2797 3133 1.815817 AAATCCTTGCCGTTGGGTGC 61.816 55.000 0.00 0.00 34.97 5.01
2802 3138 0.243636 GACCCAAATCCTTGCCGTTG 59.756 55.000 0.00 0.00 0.00 4.10
2803 3139 1.241315 CGACCCAAATCCTTGCCGTT 61.241 55.000 0.00 0.00 0.00 4.44
2805 3141 1.241315 AACGACCCAAATCCTTGCCG 61.241 55.000 0.00 0.00 0.00 5.69
2810 3147 2.364002 CAAACCAAACGACCCAAATCCT 59.636 45.455 0.00 0.00 0.00 3.24
2820 3157 1.021202 CAGGACAGCAAACCAAACGA 58.979 50.000 0.00 0.00 0.00 3.85
2842 3179 0.587242 CGTGCGATGCAAAGATTCCG 60.587 55.000 0.00 0.00 41.47 4.30
2848 3185 0.235665 AACACTCGTGCGATGCAAAG 59.764 50.000 0.00 0.00 41.47 2.77
2865 3202 4.794248 CCAACTTTTGGCTTGCTTTAAC 57.206 40.909 0.00 0.00 45.17 2.01
2890 3227 1.602237 GGGATCAAGCGTTCCCAGA 59.398 57.895 4.67 0.00 46.73 3.86
2902 3239 0.674581 CTGCAAGAACGCTGGGATCA 60.675 55.000 0.00 0.00 34.07 2.92
2909 3246 4.269523 TGGCCCTGCAAGAACGCT 62.270 61.111 0.00 0.00 34.07 5.07
2935 3272 1.301401 CGGACCGACTTTTGGCTCA 60.301 57.895 8.64 0.00 0.00 4.26
2965 3302 4.388499 GTCTCCCGCCTTTCCGCA 62.388 66.667 0.00 0.00 0.00 5.69
2987 3324 1.217882 GTGAGGGGATTTATGCGTCG 58.782 55.000 0.00 0.00 0.00 5.12
3011 3364 3.363844 GAGTGAGCGGTGGGAGAGC 62.364 68.421 0.00 0.00 0.00 4.09
3022 3375 1.038130 TCTAGAAGGGGCGAGTGAGC 61.038 60.000 0.00 0.00 0.00 4.26
3028 3381 2.119655 GCGTCTCTAGAAGGGGCGA 61.120 63.158 4.75 0.00 0.00 5.54
3030 3383 1.403687 ATGGCGTCTCTAGAAGGGGC 61.404 60.000 0.00 0.00 0.00 5.80
3035 3388 2.160721 AGGGAATGGCGTCTCTAGAA 57.839 50.000 0.00 0.00 0.00 2.10
3038 3391 3.422796 GAGATAGGGAATGGCGTCTCTA 58.577 50.000 0.57 0.57 35.06 2.43
3044 3397 1.548269 GAGAGGAGATAGGGAATGGCG 59.452 57.143 0.00 0.00 0.00 5.69
3047 3400 2.560542 CGGTGAGAGGAGATAGGGAATG 59.439 54.545 0.00 0.00 0.00 2.67
3055 3408 2.122167 GCCGTCGGTGAGAGGAGAT 61.122 63.158 13.94 0.00 36.91 2.75
3088 3441 3.506455 AGATGGTGTAATCCGATCTACCG 59.494 47.826 0.00 0.00 0.00 4.02
3118 3471 1.620819 GTTGAGAGGAGAGAGGCAACA 59.379 52.381 0.00 0.00 36.54 3.33
3119 3472 1.403514 CGTTGAGAGGAGAGAGGCAAC 60.404 57.143 0.00 0.00 34.04 4.17
3123 3476 1.813192 GCCGTTGAGAGGAGAGAGG 59.187 63.158 0.00 0.00 0.00 3.69
3139 3492 1.063027 GCCAATTTCCTAACGTACGCC 59.937 52.381 16.72 0.00 0.00 5.68
3140 3493 1.063027 GGCCAATTTCCTAACGTACGC 59.937 52.381 16.72 0.00 0.00 4.42
3148 3501 5.393068 AGAAGATGATGGCCAATTTCCTA 57.607 39.130 10.96 0.00 0.00 2.94
3153 3506 2.880890 GCGTAGAAGATGATGGCCAATT 59.119 45.455 10.96 0.00 0.00 2.32
3161 3514 0.681733 ATGGCGGCGTAGAAGATGAT 59.318 50.000 9.37 0.00 0.00 2.45
3163 3516 0.032678 AGATGGCGGCGTAGAAGATG 59.967 55.000 9.37 0.00 0.00 2.90
3202 3555 1.670811 CTTACCACCATTGATGCCGTC 59.329 52.381 0.00 0.00 0.00 4.79
3204 3557 1.401552 CACTTACCACCATTGATGCCG 59.598 52.381 0.00 0.00 0.00 5.69
3216 3569 2.575735 TGGGATGATTGAGCACTTACCA 59.424 45.455 0.00 0.00 0.00 3.25
3228 3581 4.652421 AGCAGCAAATATTGTGGGATGATT 59.348 37.500 0.00 0.00 0.00 2.57
3242 3595 5.301835 ACAGATCTACCATAGCAGCAAAT 57.698 39.130 0.00 0.00 0.00 2.32
3250 3603 5.864474 GCCGATACAAACAGATCTACCATAG 59.136 44.000 0.00 0.00 0.00 2.23
3280 3633 6.317088 CGTGCATGAAAGAAATTAGACATGT 58.683 36.000 0.00 0.00 37.83 3.21
3282 3635 5.415701 ACCGTGCATGAAAGAAATTAGACAT 59.584 36.000 7.72 0.00 0.00 3.06
3296 3649 3.743911 CACTAACAAAGTACCGTGCATGA 59.256 43.478 7.72 0.00 35.76 3.07
3337 3690 3.364664 GCCGTACAAACAAGAACCTTAGC 60.365 47.826 0.00 0.00 0.00 3.09
3341 3694 2.632987 AGCCGTACAAACAAGAACCT 57.367 45.000 0.00 0.00 0.00 3.50
3352 3705 3.645884 GAACAAGAACACTAGCCGTACA 58.354 45.455 0.00 0.00 0.00 2.90
3363 3716 2.353406 GCTAGCCCTACGAACAAGAACA 60.353 50.000 2.29 0.00 0.00 3.18
3364 3717 2.269172 GCTAGCCCTACGAACAAGAAC 58.731 52.381 2.29 0.00 0.00 3.01
3367 3720 0.172803 ACGCTAGCCCTACGAACAAG 59.827 55.000 9.66 0.00 0.00 3.16
3374 3727 3.072211 AGAACAAAAACGCTAGCCCTAC 58.928 45.455 9.66 0.00 0.00 3.18
3375 3728 3.412237 AGAACAAAAACGCTAGCCCTA 57.588 42.857 9.66 0.00 0.00 3.53
3376 3729 2.271944 AGAACAAAAACGCTAGCCCT 57.728 45.000 9.66 0.00 0.00 5.19
3377 3730 2.552743 AGAAGAACAAAAACGCTAGCCC 59.447 45.455 9.66 0.00 0.00 5.19
3378 3731 3.898517 AGAAGAACAAAAACGCTAGCC 57.101 42.857 9.66 0.00 0.00 3.93
3379 3732 4.598062 ACAAGAAGAACAAAAACGCTAGC 58.402 39.130 4.06 4.06 0.00 3.42
3380 3733 5.392585 CGAACAAGAAGAACAAAAACGCTAG 59.607 40.000 0.00 0.00 0.00 3.42
3381 3734 5.163834 ACGAACAAGAAGAACAAAAACGCTA 60.164 36.000 0.00 0.00 0.00 4.26
3382 3735 4.095610 CGAACAAGAAGAACAAAAACGCT 58.904 39.130 0.00 0.00 0.00 5.07
3383 3736 3.849708 ACGAACAAGAAGAACAAAAACGC 59.150 39.130 0.00 0.00 0.00 4.84
3384 3737 5.083389 TGACGAACAAGAAGAACAAAAACG 58.917 37.500 0.00 0.00 0.00 3.60
3385 3738 7.484959 AGAATGACGAACAAGAAGAACAAAAAC 59.515 33.333 0.00 0.00 0.00 2.43
3386 3739 7.535139 AGAATGACGAACAAGAAGAACAAAAA 58.465 30.769 0.00 0.00 0.00 1.94
3387 3740 7.083875 AGAATGACGAACAAGAAGAACAAAA 57.916 32.000 0.00 0.00 0.00 2.44
3388 3741 6.315144 TGAGAATGACGAACAAGAAGAACAAA 59.685 34.615 0.00 0.00 0.00 2.83
3389 3742 5.815222 TGAGAATGACGAACAAGAAGAACAA 59.185 36.000 0.00 0.00 0.00 2.83
3390 3743 5.356426 TGAGAATGACGAACAAGAAGAACA 58.644 37.500 0.00 0.00 0.00 3.18
3391 3744 5.907197 TGAGAATGACGAACAAGAAGAAC 57.093 39.130 0.00 0.00 0.00 3.01
3392 3745 7.278646 CCATATGAGAATGACGAACAAGAAGAA 59.721 37.037 3.65 0.00 0.00 2.52
3393 3746 6.758416 CCATATGAGAATGACGAACAAGAAGA 59.242 38.462 3.65 0.00 0.00 2.87
3394 3747 6.018425 CCCATATGAGAATGACGAACAAGAAG 60.018 42.308 3.65 0.00 0.00 2.85
3395 3748 5.817296 CCCATATGAGAATGACGAACAAGAA 59.183 40.000 3.65 0.00 0.00 2.52
3396 3749 5.359756 CCCATATGAGAATGACGAACAAGA 58.640 41.667 3.65 0.00 0.00 3.02
3397 3750 4.512944 CCCCATATGAGAATGACGAACAAG 59.487 45.833 3.65 0.00 0.00 3.16
3398 3751 4.080582 ACCCCATATGAGAATGACGAACAA 60.081 41.667 3.65 0.00 0.00 2.83
3399 3752 3.454447 ACCCCATATGAGAATGACGAACA 59.546 43.478 3.65 0.00 0.00 3.18
3400 3753 4.073293 ACCCCATATGAGAATGACGAAC 57.927 45.455 3.65 0.00 0.00 3.95
3401 3754 4.163268 TGAACCCCATATGAGAATGACGAA 59.837 41.667 3.65 0.00 0.00 3.85
3402 3755 3.709141 TGAACCCCATATGAGAATGACGA 59.291 43.478 3.65 0.00 0.00 4.20
3403 3756 4.071961 TGAACCCCATATGAGAATGACG 57.928 45.455 3.65 0.00 0.00 4.35
3404 3757 6.773638 ACTATGAACCCCATATGAGAATGAC 58.226 40.000 3.65 0.00 37.14 3.06
3405 3758 7.392766 AACTATGAACCCCATATGAGAATGA 57.607 36.000 3.65 0.00 37.14 2.57
3406 3759 7.335422 GCTAACTATGAACCCCATATGAGAATG 59.665 40.741 3.65 0.00 37.14 2.67
3407 3760 7.017551 TGCTAACTATGAACCCCATATGAGAAT 59.982 37.037 3.65 0.00 37.14 2.40
3408 3761 6.328934 TGCTAACTATGAACCCCATATGAGAA 59.671 38.462 3.65 0.00 37.14 2.87
3409 3762 5.843969 TGCTAACTATGAACCCCATATGAGA 59.156 40.000 3.65 0.00 37.14 3.27
3410 3763 6.014242 TCTGCTAACTATGAACCCCATATGAG 60.014 42.308 3.65 0.00 37.14 2.90
3411 3764 5.843969 TCTGCTAACTATGAACCCCATATGA 59.156 40.000 3.65 0.00 37.14 2.15
3412 3765 6.114187 TCTGCTAACTATGAACCCCATATG 57.886 41.667 0.00 0.00 37.14 1.78
3413 3766 6.732862 AGATCTGCTAACTATGAACCCCATAT 59.267 38.462 0.00 0.00 37.14 1.78
3414 3767 6.014242 CAGATCTGCTAACTATGAACCCCATA 60.014 42.308 10.38 0.00 36.71 2.74
3415 3768 4.910304 AGATCTGCTAACTATGAACCCCAT 59.090 41.667 0.00 0.00 39.25 4.00
3416 3769 4.101585 CAGATCTGCTAACTATGAACCCCA 59.898 45.833 10.38 0.00 0.00 4.96
3417 3770 4.503991 CCAGATCTGCTAACTATGAACCCC 60.504 50.000 17.76 0.00 0.00 4.95
3418 3771 4.636249 CCAGATCTGCTAACTATGAACCC 58.364 47.826 17.76 0.00 0.00 4.11
3419 3772 4.061596 GCCAGATCTGCTAACTATGAACC 58.938 47.826 17.76 0.00 0.00 3.62
3420 3773 4.509600 GTGCCAGATCTGCTAACTATGAAC 59.490 45.833 17.76 2.07 0.00 3.18
3421 3774 4.406972 AGTGCCAGATCTGCTAACTATGAA 59.593 41.667 17.76 0.00 0.00 2.57
3422 3775 3.963374 AGTGCCAGATCTGCTAACTATGA 59.037 43.478 17.76 0.00 0.00 2.15
3423 3776 4.333913 AGTGCCAGATCTGCTAACTATG 57.666 45.455 17.76 2.14 0.00 2.23
3424 3777 6.485830 TTTAGTGCCAGATCTGCTAACTAT 57.514 37.500 17.76 3.10 0.00 2.12
3425 3778 5.932619 TTTAGTGCCAGATCTGCTAACTA 57.067 39.130 17.76 18.44 0.00 2.24
3426 3779 4.826274 TTTAGTGCCAGATCTGCTAACT 57.174 40.909 17.76 19.35 0.00 2.24
3427 3780 5.008118 GGAATTTAGTGCCAGATCTGCTAAC 59.992 44.000 17.76 13.69 0.00 2.34
3428 3781 5.104360 AGGAATTTAGTGCCAGATCTGCTAA 60.104 40.000 17.76 15.48 0.00 3.09
3429 3782 4.410228 AGGAATTTAGTGCCAGATCTGCTA 59.590 41.667 17.76 10.46 0.00 3.49
3430 3783 3.201708 AGGAATTTAGTGCCAGATCTGCT 59.798 43.478 17.76 11.46 0.00 4.24
3431 3784 3.549794 AGGAATTTAGTGCCAGATCTGC 58.450 45.455 17.76 12.97 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.