Multiple sequence alignment - TraesCS2A01G001800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G001800 chr2A 100.000 2567 0 0 1 2567 714443 717009 0.000000e+00 4741.0
1 TraesCS2A01G001800 chr2A 82.519 675 93 13 887 1540 891891 892561 1.030000e-158 569.0
2 TraesCS2A01G001800 chr2A 82.975 605 80 12 949 1540 955059 955653 2.260000e-145 525.0
3 TraesCS2A01G001800 chr2A 82.653 588 80 15 971 1540 819964 820547 3.810000e-138 501.0
4 TraesCS2A01G001800 chr2A 79.968 634 94 23 952 1564 746934 747555 1.090000e-118 436.0
5 TraesCS2A01G001800 chr2A 85.393 178 18 6 2368 2542 820968 821140 7.300000e-41 178.0
6 TraesCS2A01G001800 chr2A 85.393 178 18 6 2368 2542 893123 893295 7.300000e-41 178.0
7 TraesCS2A01G001800 chr2A 85.393 178 18 6 2368 2542 956212 956384 7.300000e-41 178.0
8 TraesCS2A01G001800 chr2A 88.889 90 9 1 2329 2418 766340645 766340733 2.700000e-20 110.0
9 TraesCS2A01G001800 chr2A 97.222 36 1 0 698 733 766336587 766336622 7.670000e-06 62.1
10 TraesCS2A01G001800 chr2B 90.827 774 39 13 1134 1884 10205842 10205078 0.000000e+00 1007.0
11 TraesCS2A01G001800 chr2B 89.902 614 45 8 1956 2567 10204293 10203695 0.000000e+00 774.0
12 TraesCS2A01G001800 chr2B 90.153 589 25 12 18 581 10206919 10206339 0.000000e+00 736.0
13 TraesCS2A01G001800 chr2B 79.511 654 95 25 938 1564 10188214 10187573 1.820000e-116 429.0
14 TraesCS2A01G001800 chr2B 88.312 308 32 3 1956 2260 25343845 25344151 1.450000e-97 366.0
15 TraesCS2A01G001800 chr5A 82.466 884 105 24 1007 1841 617526026 617526908 0.000000e+00 728.0
16 TraesCS2A01G001800 chr2D 83.622 635 79 13 948 1564 1659452 1660079 7.970000e-160 573.0
17 TraesCS2A01G001800 chr2D 79.560 636 96 24 952 1564 1637752 1638376 8.490000e-115 424.0
18 TraesCS2A01G001800 chr2D 90.411 146 5 4 1763 1899 1660373 1660518 1.570000e-42 183.0
19 TraesCS2A01G001800 chr7D 86.925 413 46 2 28 440 312533205 312533609 8.370000e-125 457.0
20 TraesCS2A01G001800 chr7D 87.379 309 36 3 1956 2262 627404282 627404589 4.060000e-93 351.0
21 TraesCS2A01G001800 chr7D 94.215 121 7 0 400 520 312533619 312533739 4.360000e-43 185.0
22 TraesCS2A01G001800 chr4D 88.065 310 34 2 1956 2262 454815207 454814898 5.220000e-97 364.0
23 TraesCS2A01G001800 chr4D 87.459 303 34 4 1956 2256 114426548 114426248 1.890000e-91 346.0
24 TraesCS2A01G001800 chr5B 87.948 307 34 2 1956 2259 311547564 311547870 2.430000e-95 359.0
25 TraesCS2A01G001800 chr6B 87.500 312 36 3 1956 2264 707334665 707334976 8.730000e-95 357.0
26 TraesCS2A01G001800 chr6B 86.495 311 39 3 1956 2263 707617457 707617767 3.160000e-89 339.0
27 TraesCS2A01G001800 chr3B 87.338 308 34 5 1956 2260 780286580 780286275 5.260000e-92 348.0
28 TraesCS2A01G001800 chr6D 87.789 303 28 5 1956 2256 388331002 388331297 1.890000e-91 346.0
29 TraesCS2A01G001800 chr3A 84.153 183 28 1 2010 2191 197848680 197848498 2.630000e-40 176.0
30 TraesCS2A01G001800 chr4A 97.436 39 0 1 1924 1961 590991407 590991369 5.930000e-07 65.8
31 TraesCS2A01G001800 chr1B 100.000 29 0 0 1933 1961 9979375 9979403 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G001800 chr2A 714443 717009 2566 False 4741.0 4741 100.0000 1 2567 1 chr2A.!!$F1 2566
1 TraesCS2A01G001800 chr2A 746934 747555 621 False 436.0 436 79.9680 952 1564 1 chr2A.!!$F2 612
2 TraesCS2A01G001800 chr2A 891891 893295 1404 False 373.5 569 83.9560 887 2542 2 chr2A.!!$F6 1655
3 TraesCS2A01G001800 chr2A 955059 956384 1325 False 351.5 525 84.1840 949 2542 2 chr2A.!!$F7 1593
4 TraesCS2A01G001800 chr2A 819964 821140 1176 False 339.5 501 84.0230 971 2542 2 chr2A.!!$F5 1571
5 TraesCS2A01G001800 chr2B 10203695 10206919 3224 True 839.0 1007 90.2940 18 2567 3 chr2B.!!$R2 2549
6 TraesCS2A01G001800 chr2B 10187573 10188214 641 True 429.0 429 79.5110 938 1564 1 chr2B.!!$R1 626
7 TraesCS2A01G001800 chr5A 617526026 617526908 882 False 728.0 728 82.4660 1007 1841 1 chr5A.!!$F1 834
8 TraesCS2A01G001800 chr2D 1637752 1638376 624 False 424.0 424 79.5600 952 1564 1 chr2D.!!$F1 612
9 TraesCS2A01G001800 chr2D 1659452 1660518 1066 False 378.0 573 87.0165 948 1899 2 chr2D.!!$F2 951
10 TraesCS2A01G001800 chr7D 312533205 312533739 534 False 321.0 457 90.5700 28 520 2 chr7D.!!$F2 492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 883 0.036732 ATCATCTGCACCCAACACGT 59.963 50.0 0.0 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 3415 0.108585 TGAGGGTTTGTGTCCTGCTC 59.891 55.0 0.0 0.0 32.74 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.404098 GGCGATCCCACCGGTGTT 62.404 66.667 31.80 17.01 0.00 3.32
87 88 3.384668 CGCGTTACAGAGATGGATGATT 58.615 45.455 0.00 0.00 0.00 2.57
98 99 0.994247 TGGATGATTGAGTGGCTGGT 59.006 50.000 0.00 0.00 0.00 4.00
123 124 0.104487 CCTCAGCAGATCAGCGACAT 59.896 55.000 4.27 0.00 40.15 3.06
131 132 2.538861 CAGATCAGCGACATGTGATGAC 59.461 50.000 15.23 10.79 33.43 3.06
178 179 1.517242 GAGGAATGATGCACGGGATC 58.483 55.000 0.00 0.00 0.00 3.36
233 238 7.519488 CGCAAAAACAGTGATCTCATATATGCT 60.519 37.037 7.92 0.00 0.00 3.79
264 269 1.619654 CAGTGCAGGTGATTTGGGAA 58.380 50.000 0.00 0.00 0.00 3.97
265 270 2.173519 CAGTGCAGGTGATTTGGGAAT 58.826 47.619 0.00 0.00 0.00 3.01
266 271 2.564062 CAGTGCAGGTGATTTGGGAATT 59.436 45.455 0.00 0.00 0.00 2.17
267 272 2.564062 AGTGCAGGTGATTTGGGAATTG 59.436 45.455 0.00 0.00 0.00 2.32
268 273 1.901159 TGCAGGTGATTTGGGAATTGG 59.099 47.619 0.00 0.00 0.00 3.16
269 274 1.207811 GCAGGTGATTTGGGAATTGGG 59.792 52.381 0.00 0.00 0.00 4.12
311 316 2.586079 CGACGGAGCGATGGCAAT 60.586 61.111 1.50 0.00 43.41 3.56
384 389 0.185175 GGGGAAAAGTGTGGTGGAGT 59.815 55.000 0.00 0.00 0.00 3.85
385 390 1.605753 GGGAAAAGTGTGGTGGAGTC 58.394 55.000 0.00 0.00 0.00 3.36
444 498 0.601841 GCATGCCACTGCTTTGCTTT 60.602 50.000 6.36 0.00 41.27 3.51
554 629 6.017192 TGTGGTGAAATATGCTAAATGATCCG 60.017 38.462 0.00 0.00 0.00 4.18
557 632 6.428159 GGTGAAATATGCTAAATGATCCGAGT 59.572 38.462 0.00 0.00 0.00 4.18
560 635 9.208022 TGAAATATGCTAAATGATCCGAGTAAG 57.792 33.333 0.00 0.00 0.00 2.34
571 646 1.968493 TCCGAGTAAGAACCTTGCTGT 59.032 47.619 2.16 0.00 0.00 4.40
581 656 2.352422 CTTGCTGTAGCTGGGCCA 59.648 61.111 5.85 5.85 42.66 5.36
582 657 1.077212 CTTGCTGTAGCTGGGCCAT 60.077 57.895 6.72 0.00 42.66 4.40
584 659 0.251742 TTGCTGTAGCTGGGCCATTT 60.252 50.000 6.72 0.00 42.66 2.32
585 660 0.680921 TGCTGTAGCTGGGCCATTTC 60.681 55.000 6.72 0.00 42.66 2.17
586 661 0.680921 GCTGTAGCTGGGCCATTTCA 60.681 55.000 6.72 1.85 38.21 2.69
587 662 1.838112 CTGTAGCTGGGCCATTTCAA 58.162 50.000 6.72 0.00 0.00 2.69
589 664 1.075374 TGTAGCTGGGCCATTTCAACT 59.925 47.619 6.72 0.46 0.00 3.16
591 666 2.834638 AGCTGGGCCATTTCAACTAT 57.165 45.000 6.72 0.00 0.00 2.12
593 668 4.459852 AGCTGGGCCATTTCAACTATAT 57.540 40.909 6.72 0.00 0.00 0.86
594 669 4.147321 AGCTGGGCCATTTCAACTATATG 58.853 43.478 6.72 0.00 0.00 1.78
595 670 3.305608 GCTGGGCCATTTCAACTATATGC 60.306 47.826 6.72 0.00 0.00 3.14
596 671 3.890756 CTGGGCCATTTCAACTATATGCA 59.109 43.478 6.72 0.00 0.00 3.96
597 672 4.482030 TGGGCCATTTCAACTATATGCAT 58.518 39.130 0.00 3.79 0.00 3.96
598 673 4.281435 TGGGCCATTTCAACTATATGCATG 59.719 41.667 10.16 0.00 0.00 4.06
599 674 4.281688 GGGCCATTTCAACTATATGCATGT 59.718 41.667 10.16 5.06 0.00 3.21
600 675 5.476599 GGGCCATTTCAACTATATGCATGTA 59.523 40.000 10.16 6.18 0.00 2.29
601 676 6.153340 GGGCCATTTCAACTATATGCATGTAT 59.847 38.462 10.16 0.82 0.00 2.29
602 677 7.031372 GGCCATTTCAACTATATGCATGTATG 58.969 38.462 10.16 3.59 0.00 2.39
616 691 0.826715 TGTATGCAGGCTCTCCACTC 59.173 55.000 0.00 0.00 33.74 3.51
618 693 2.311463 GTATGCAGGCTCTCCACTCTA 58.689 52.381 0.00 0.00 33.74 2.43
619 694 1.412079 ATGCAGGCTCTCCACTCTAG 58.588 55.000 0.00 0.00 33.74 2.43
620 695 0.040351 TGCAGGCTCTCCACTCTAGT 59.960 55.000 0.00 0.00 33.74 2.57
635 710 6.170675 CACTCTAGTGGTAAAAATGTCAGC 57.829 41.667 2.01 0.00 42.10 4.26
637 712 6.091441 CACTCTAGTGGTAAAAATGTCAGCTC 59.909 42.308 2.01 0.00 42.10 4.09
638 713 5.488341 TCTAGTGGTAAAAATGTCAGCTCC 58.512 41.667 0.00 0.00 0.00 4.70
639 714 4.373156 AGTGGTAAAAATGTCAGCTCCT 57.627 40.909 0.00 0.00 0.00 3.69
640 715 4.729868 AGTGGTAAAAATGTCAGCTCCTT 58.270 39.130 0.00 0.00 0.00 3.36
641 716 5.140454 AGTGGTAAAAATGTCAGCTCCTTT 58.860 37.500 0.00 0.00 0.00 3.11
642 717 5.010012 AGTGGTAAAAATGTCAGCTCCTTTG 59.990 40.000 0.00 0.00 0.00 2.77
643 718 5.009610 GTGGTAAAAATGTCAGCTCCTTTGA 59.990 40.000 0.00 0.00 0.00 2.69
645 720 5.920840 GGTAAAAATGTCAGCTCCTTTGAAC 59.079 40.000 0.00 0.00 0.00 3.18
646 721 4.590850 AAAATGTCAGCTCCTTTGAACC 57.409 40.909 0.00 0.00 0.00 3.62
647 722 2.957402 ATGTCAGCTCCTTTGAACCA 57.043 45.000 0.00 0.00 0.00 3.67
649 724 4.574674 ATGTCAGCTCCTTTGAACCATA 57.425 40.909 0.00 0.00 0.00 2.74
650 725 3.674997 TGTCAGCTCCTTTGAACCATAC 58.325 45.455 0.00 0.00 0.00 2.39
651 726 3.327757 TGTCAGCTCCTTTGAACCATACT 59.672 43.478 0.00 0.00 0.00 2.12
652 727 3.686726 GTCAGCTCCTTTGAACCATACTG 59.313 47.826 0.00 0.00 0.00 2.74
653 728 3.327757 TCAGCTCCTTTGAACCATACTGT 59.672 43.478 0.00 0.00 0.00 3.55
656 731 5.705441 CAGCTCCTTTGAACCATACTGTAAA 59.295 40.000 0.00 0.00 0.00 2.01
657 732 6.375455 CAGCTCCTTTGAACCATACTGTAAAT 59.625 38.462 0.00 0.00 0.00 1.40
658 733 6.948309 AGCTCCTTTGAACCATACTGTAAATT 59.052 34.615 0.00 0.00 0.00 1.82
659 734 7.029563 GCTCCTTTGAACCATACTGTAAATTG 58.970 38.462 0.00 0.00 0.00 2.32
660 735 6.919721 TCCTTTGAACCATACTGTAAATTGC 58.080 36.000 0.00 0.00 0.00 3.56
670 819 6.127083 CCATACTGTAAATTGCCCATCCTTTT 60.127 38.462 0.00 0.00 0.00 2.27
705 854 3.548745 AAAAAGGCTCAAGCAAAAGCT 57.451 38.095 4.13 0.00 44.36 3.74
706 855 2.521105 AAAGGCTCAAGCAAAAGCTG 57.479 45.000 4.13 0.00 44.36 4.24
708 857 1.406903 AGGCTCAAGCAAAAGCTGTT 58.593 45.000 4.13 0.00 44.36 3.16
710 859 1.202452 GGCTCAAGCAAAAGCTGTTGT 60.202 47.619 17.92 2.44 44.36 3.32
711 860 2.543641 GCTCAAGCAAAAGCTGTTGTT 58.456 42.857 17.92 9.44 41.59 2.83
712 861 2.283351 GCTCAAGCAAAAGCTGTTGTTG 59.717 45.455 17.92 18.21 41.59 3.33
713 862 2.861935 CTCAAGCAAAAGCTGTTGTTGG 59.138 45.455 17.92 9.96 0.00 3.77
714 863 2.233431 TCAAGCAAAAGCTGTTGTTGGT 59.767 40.909 17.92 8.29 34.61 3.67
715 864 3.445450 TCAAGCAAAAGCTGTTGTTGGTA 59.555 39.130 17.92 4.45 32.94 3.25
716 865 4.099266 TCAAGCAAAAGCTGTTGTTGGTAT 59.901 37.500 17.92 0.00 32.94 2.73
717 866 4.243007 AGCAAAAGCTGTTGTTGGTATC 57.757 40.909 17.92 0.00 31.57 2.24
718 867 3.636300 AGCAAAAGCTGTTGTTGGTATCA 59.364 39.130 17.92 0.00 31.57 2.15
719 868 4.281688 AGCAAAAGCTGTTGTTGGTATCAT 59.718 37.500 17.92 0.00 31.57 2.45
720 869 4.622740 GCAAAAGCTGTTGTTGGTATCATC 59.377 41.667 17.92 0.00 0.00 2.92
721 870 5.565439 GCAAAAGCTGTTGTTGGTATCATCT 60.565 40.000 17.92 0.00 0.00 2.90
722 871 5.633830 AAAGCTGTTGTTGGTATCATCTG 57.366 39.130 0.00 0.00 0.00 2.90
723 872 3.012518 AGCTGTTGTTGGTATCATCTGC 58.987 45.455 0.00 0.00 33.13 4.26
724 873 2.749076 GCTGTTGTTGGTATCATCTGCA 59.251 45.455 0.00 0.00 33.17 4.41
725 874 3.426695 GCTGTTGTTGGTATCATCTGCAC 60.427 47.826 0.00 0.00 33.17 4.57
726 875 3.081061 TGTTGTTGGTATCATCTGCACC 58.919 45.455 0.00 0.00 0.00 5.01
727 876 2.418368 TGTTGGTATCATCTGCACCC 57.582 50.000 0.00 0.00 0.00 4.61
728 877 1.632920 TGTTGGTATCATCTGCACCCA 59.367 47.619 0.00 0.00 0.00 4.51
729 878 2.040947 TGTTGGTATCATCTGCACCCAA 59.959 45.455 0.00 0.00 0.00 4.12
730 879 2.418368 TGGTATCATCTGCACCCAAC 57.582 50.000 0.00 0.00 0.00 3.77
731 880 1.632920 TGGTATCATCTGCACCCAACA 59.367 47.619 0.00 0.00 0.00 3.33
732 881 2.017049 GGTATCATCTGCACCCAACAC 58.983 52.381 0.00 0.00 0.00 3.32
733 882 1.665679 GTATCATCTGCACCCAACACG 59.334 52.381 0.00 0.00 0.00 4.49
734 883 0.036732 ATCATCTGCACCCAACACGT 59.963 50.000 0.00 0.00 0.00 4.49
735 884 0.682292 TCATCTGCACCCAACACGTA 59.318 50.000 0.00 0.00 0.00 3.57
736 885 0.796312 CATCTGCACCCAACACGTAC 59.204 55.000 0.00 0.00 0.00 3.67
737 886 0.669318 ATCTGCACCCAACACGTACG 60.669 55.000 15.01 15.01 0.00 3.67
738 887 1.593209 CTGCACCCAACACGTACGT 60.593 57.895 16.72 16.72 0.00 3.57
751 900 4.708868 CACGTACGTGCATGCTAATTAT 57.291 40.909 32.93 0.00 39.39 1.28
752 901 5.815964 CACGTACGTGCATGCTAATTATA 57.184 39.130 32.93 0.12 39.39 0.98
753 902 6.389622 CACGTACGTGCATGCTAATTATAT 57.610 37.500 32.93 0.00 39.39 0.86
754 903 6.817396 CACGTACGTGCATGCTAATTATATT 58.183 36.000 32.93 0.00 39.39 1.28
755 904 7.944997 CACGTACGTGCATGCTAATTATATTA 58.055 34.615 32.93 0.00 39.39 0.98
756 905 8.429299 CACGTACGTGCATGCTAATTATATTAA 58.571 33.333 32.93 0.00 39.39 1.40
757 906 8.644619 ACGTACGTGCATGCTAATTATATTAAG 58.355 33.333 22.14 0.00 0.00 1.85
758 907 7.630987 CGTACGTGCATGCTAATTATATTAAGC 59.369 37.037 20.33 0.00 35.51 3.09
759 908 7.672983 ACGTGCATGCTAATTATATTAAGCT 57.327 32.000 20.33 0.00 35.95 3.74
760 909 7.743104 ACGTGCATGCTAATTATATTAAGCTC 58.257 34.615 20.33 0.00 35.95 4.09
761 910 7.148407 ACGTGCATGCTAATTATATTAAGCTCC 60.148 37.037 20.33 0.00 35.95 4.70
762 911 7.182761 GTGCATGCTAATTATATTAAGCTCCG 58.817 38.462 20.33 0.00 35.95 4.63
763 912 6.878923 TGCATGCTAATTATATTAAGCTCCGT 59.121 34.615 20.33 0.00 35.95 4.69
764 913 7.064609 TGCATGCTAATTATATTAAGCTCCGTC 59.935 37.037 20.33 0.00 35.95 4.79
765 914 7.466050 GCATGCTAATTATATTAAGCTCCGTCC 60.466 40.741 11.37 0.00 35.95 4.79
766 915 6.403878 TGCTAATTATATTAAGCTCCGTCCC 58.596 40.000 0.00 0.00 35.95 4.46
767 916 6.212791 TGCTAATTATATTAAGCTCCGTCCCT 59.787 38.462 0.00 0.00 35.95 4.20
768 917 6.535508 GCTAATTATATTAAGCTCCGTCCCTG 59.464 42.308 0.00 0.00 32.18 4.45
769 918 6.681729 AATTATATTAAGCTCCGTCCCTGA 57.318 37.500 0.00 0.00 0.00 3.86
770 919 5.723672 TTATATTAAGCTCCGTCCCTGAG 57.276 43.478 0.00 0.00 0.00 3.35
771 920 1.867363 ATTAAGCTCCGTCCCTGAGT 58.133 50.000 0.00 0.00 32.31 3.41
772 921 0.895530 TTAAGCTCCGTCCCTGAGTG 59.104 55.000 0.00 0.00 32.31 3.51
773 922 1.605058 TAAGCTCCGTCCCTGAGTGC 61.605 60.000 0.00 0.00 32.31 4.40
774 923 4.803426 GCTCCGTCCCTGAGTGCG 62.803 72.222 0.00 0.00 32.31 5.34
775 924 3.374402 CTCCGTCCCTGAGTGCGT 61.374 66.667 0.00 0.00 0.00 5.24
776 925 2.034532 TCCGTCCCTGAGTGCGTA 59.965 61.111 0.00 0.00 0.00 4.42
777 926 1.379443 TCCGTCCCTGAGTGCGTAT 60.379 57.895 0.00 0.00 0.00 3.06
778 927 0.968901 TCCGTCCCTGAGTGCGTATT 60.969 55.000 0.00 0.00 0.00 1.89
779 928 0.806102 CCGTCCCTGAGTGCGTATTG 60.806 60.000 0.00 0.00 0.00 1.90
780 929 0.172578 CGTCCCTGAGTGCGTATTGA 59.827 55.000 0.00 0.00 0.00 2.57
781 930 1.641577 GTCCCTGAGTGCGTATTGAC 58.358 55.000 0.00 0.00 0.00 3.18
782 931 0.535335 TCCCTGAGTGCGTATTGACC 59.465 55.000 0.00 0.00 0.00 4.02
783 932 0.806102 CCCTGAGTGCGTATTGACCG 60.806 60.000 0.00 0.00 0.00 4.79
784 933 0.806102 CCTGAGTGCGTATTGACCGG 60.806 60.000 0.00 0.00 0.00 5.28
785 934 0.806102 CTGAGTGCGTATTGACCGGG 60.806 60.000 6.32 0.00 0.00 5.73
786 935 2.125269 AGTGCGTATTGACCGGGC 60.125 61.111 6.32 1.57 0.00 6.13
787 936 2.125269 GTGCGTATTGACCGGGCT 60.125 61.111 9.82 0.00 0.00 5.19
788 937 1.743995 GTGCGTATTGACCGGGCTT 60.744 57.895 9.82 0.00 0.00 4.35
789 938 1.743623 TGCGTATTGACCGGGCTTG 60.744 57.895 9.82 0.00 0.00 4.01
790 939 1.743995 GCGTATTGACCGGGCTTGT 60.744 57.895 9.82 0.00 0.00 3.16
791 940 1.702491 GCGTATTGACCGGGCTTGTC 61.702 60.000 9.82 0.00 0.00 3.18
792 941 1.418342 CGTATTGACCGGGCTTGTCG 61.418 60.000 9.82 4.87 35.46 4.35
793 942 0.108520 GTATTGACCGGGCTTGTCGA 60.109 55.000 9.82 0.00 35.46 4.20
794 943 0.609151 TATTGACCGGGCTTGTCGAA 59.391 50.000 9.82 0.00 35.46 3.71
795 944 0.250553 ATTGACCGGGCTTGTCGAAA 60.251 50.000 9.82 0.00 35.46 3.46
796 945 0.250553 TTGACCGGGCTTGTCGAAAT 60.251 50.000 9.82 0.00 35.46 2.17
797 946 0.953471 TGACCGGGCTTGTCGAAATG 60.953 55.000 9.82 0.00 35.46 2.32
798 947 2.253414 GACCGGGCTTGTCGAAATGC 62.253 60.000 6.32 4.90 0.00 3.56
799 948 2.331893 CCGGGCTTGTCGAAATGCA 61.332 57.895 14.76 0.00 0.00 3.96
800 949 1.656818 CCGGGCTTGTCGAAATGCAT 61.657 55.000 14.76 0.00 0.00 3.96
801 950 0.523968 CGGGCTTGTCGAAATGCATG 60.524 55.000 14.76 3.27 0.00 4.06
802 951 0.803380 GGGCTTGTCGAAATGCATGC 60.803 55.000 11.82 11.82 35.76 4.06
803 952 0.109179 GGCTTGTCGAAATGCATGCA 60.109 50.000 25.04 25.04 37.46 3.96
804 953 0.986992 GCTTGTCGAAATGCATGCAC 59.013 50.000 25.37 9.85 36.29 4.57
805 954 1.401931 GCTTGTCGAAATGCATGCACT 60.402 47.619 25.37 10.02 36.29 4.40
806 955 2.159531 GCTTGTCGAAATGCATGCACTA 60.160 45.455 25.37 5.09 36.29 2.74
807 956 3.670359 GCTTGTCGAAATGCATGCACTAA 60.670 43.478 25.37 1.26 36.29 2.24
808 957 4.475028 CTTGTCGAAATGCATGCACTAAA 58.525 39.130 25.37 9.72 0.00 1.85
809 958 4.700268 TGTCGAAATGCATGCACTAAAT 57.300 36.364 25.37 3.10 0.00 1.40
810 959 5.058149 TGTCGAAATGCATGCACTAAATT 57.942 34.783 25.37 10.40 0.00 1.82
811 960 5.468592 TGTCGAAATGCATGCACTAAATTT 58.531 33.333 25.37 18.95 0.00 1.82
812 961 5.345472 TGTCGAAATGCATGCACTAAATTTG 59.655 36.000 25.37 15.80 0.00 2.32
813 962 4.863689 TCGAAATGCATGCACTAAATTTGG 59.136 37.500 25.37 19.15 0.00 3.28
814 963 4.492895 CGAAATGCATGCACTAAATTTGGC 60.493 41.667 25.37 7.35 0.00 4.52
815 964 3.613494 ATGCATGCACTAAATTTGGCA 57.387 38.095 25.37 13.85 41.00 4.92
816 965 3.397849 TGCATGCACTAAATTTGGCAA 57.602 38.095 18.46 0.00 40.02 4.52
817 966 3.940319 TGCATGCACTAAATTTGGCAAT 58.060 36.364 18.46 0.00 40.02 3.56
818 967 3.933955 TGCATGCACTAAATTTGGCAATC 59.066 39.130 18.46 11.12 40.02 2.67
819 968 4.186159 GCATGCACTAAATTTGGCAATCT 58.814 39.130 14.21 0.00 40.02 2.40
820 969 5.105432 TGCATGCACTAAATTTGGCAATCTA 60.105 36.000 18.46 0.00 40.02 1.98
821 970 5.232838 GCATGCACTAAATTTGGCAATCTAC 59.767 40.000 14.21 3.79 40.02 2.59
822 971 5.323371 TGCACTAAATTTGGCAATCTACC 57.677 39.130 0.00 0.00 32.54 3.18
823 972 5.016173 TGCACTAAATTTGGCAATCTACCT 58.984 37.500 0.00 0.00 32.54 3.08
824 973 6.184068 TGCACTAAATTTGGCAATCTACCTA 58.816 36.000 0.00 0.00 32.54 3.08
825 974 6.094881 TGCACTAAATTTGGCAATCTACCTAC 59.905 38.462 0.00 0.00 32.54 3.18
826 975 6.318900 GCACTAAATTTGGCAATCTACCTACT 59.681 38.462 0.00 0.00 0.00 2.57
827 976 7.497909 GCACTAAATTTGGCAATCTACCTACTA 59.502 37.037 0.00 0.00 0.00 1.82
828 977 9.391006 CACTAAATTTGGCAATCTACCTACTAA 57.609 33.333 0.00 0.00 0.00 2.24
831 980 7.823745 AATTTGGCAATCTACCTACTAATGG 57.176 36.000 0.00 0.00 0.00 3.16
832 981 4.351874 TGGCAATCTACCTACTAATGGC 57.648 45.455 0.00 0.00 0.00 4.40
833 982 3.973973 TGGCAATCTACCTACTAATGGCT 59.026 43.478 0.00 0.00 33.57 4.75
834 983 4.040461 TGGCAATCTACCTACTAATGGCTC 59.960 45.833 0.00 0.00 33.57 4.70
835 984 4.040461 GGCAATCTACCTACTAATGGCTCA 59.960 45.833 0.00 0.00 0.00 4.26
836 985 5.280215 GGCAATCTACCTACTAATGGCTCAT 60.280 44.000 0.00 0.00 0.00 2.90
837 986 5.641209 GCAATCTACCTACTAATGGCTCATG 59.359 44.000 0.00 0.00 0.00 3.07
838 987 6.169094 CAATCTACCTACTAATGGCTCATGG 58.831 44.000 0.00 0.00 0.00 3.66
839 988 2.938956 ACCTACTAATGGCTCATGGC 57.061 50.000 0.00 0.00 40.90 4.40
850 999 1.466856 GCTCATGGCCTCAAACATCA 58.533 50.000 3.32 0.00 34.27 3.07
851 1000 1.133790 GCTCATGGCCTCAAACATCAC 59.866 52.381 3.32 0.00 34.27 3.06
852 1001 2.439409 CTCATGGCCTCAAACATCACA 58.561 47.619 3.32 0.00 0.00 3.58
853 1002 2.821378 CTCATGGCCTCAAACATCACAA 59.179 45.455 3.32 0.00 0.00 3.33
854 1003 3.433343 TCATGGCCTCAAACATCACAAT 58.567 40.909 3.32 0.00 0.00 2.71
855 1004 4.598022 TCATGGCCTCAAACATCACAATA 58.402 39.130 3.32 0.00 0.00 1.90
856 1005 5.015515 TCATGGCCTCAAACATCACAATAA 58.984 37.500 3.32 0.00 0.00 1.40
857 1006 4.782019 TGGCCTCAAACATCACAATAAC 57.218 40.909 3.32 0.00 0.00 1.89
858 1007 4.148079 TGGCCTCAAACATCACAATAACA 58.852 39.130 3.32 0.00 0.00 2.41
859 1008 4.771577 TGGCCTCAAACATCACAATAACAT 59.228 37.500 3.32 0.00 0.00 2.71
860 1009 5.105797 TGGCCTCAAACATCACAATAACATC 60.106 40.000 3.32 0.00 0.00 3.06
861 1010 5.105797 GGCCTCAAACATCACAATAACATCA 60.106 40.000 0.00 0.00 0.00 3.07
862 1011 5.801947 GCCTCAAACATCACAATAACATCAC 59.198 40.000 0.00 0.00 0.00 3.06
863 1012 6.324819 CCTCAAACATCACAATAACATCACC 58.675 40.000 0.00 0.00 0.00 4.02
864 1013 6.266168 TCAAACATCACAATAACATCACCC 57.734 37.500 0.00 0.00 0.00 4.61
865 1014 5.772169 TCAAACATCACAATAACATCACCCA 59.228 36.000 0.00 0.00 0.00 4.51
866 1015 6.266330 TCAAACATCACAATAACATCACCCAA 59.734 34.615 0.00 0.00 0.00 4.12
867 1016 5.643379 ACATCACAATAACATCACCCAAC 57.357 39.130 0.00 0.00 0.00 3.77
868 1017 5.324409 ACATCACAATAACATCACCCAACT 58.676 37.500 0.00 0.00 0.00 3.16
869 1018 5.415701 ACATCACAATAACATCACCCAACTC 59.584 40.000 0.00 0.00 0.00 3.01
870 1019 5.241403 TCACAATAACATCACCCAACTCT 57.759 39.130 0.00 0.00 0.00 3.24
871 1020 5.245531 TCACAATAACATCACCCAACTCTC 58.754 41.667 0.00 0.00 0.00 3.20
872 1021 5.013079 TCACAATAACATCACCCAACTCTCT 59.987 40.000 0.00 0.00 0.00 3.10
873 1022 5.352569 CACAATAACATCACCCAACTCTCTC 59.647 44.000 0.00 0.00 0.00 3.20
874 1023 5.249393 ACAATAACATCACCCAACTCTCTCT 59.751 40.000 0.00 0.00 0.00 3.10
875 1024 3.971245 AACATCACCCAACTCTCTCTC 57.029 47.619 0.00 0.00 0.00 3.20
876 1025 3.182887 ACATCACCCAACTCTCTCTCT 57.817 47.619 0.00 0.00 0.00 3.10
877 1026 3.096092 ACATCACCCAACTCTCTCTCTC 58.904 50.000 0.00 0.00 0.00 3.20
878 1027 3.245586 ACATCACCCAACTCTCTCTCTCT 60.246 47.826 0.00 0.00 0.00 3.10
879 1028 3.080300 TCACCCAACTCTCTCTCTCTC 57.920 52.381 0.00 0.00 0.00 3.20
880 1029 2.647299 TCACCCAACTCTCTCTCTCTCT 59.353 50.000 0.00 0.00 0.00 3.10
881 1030 3.016736 CACCCAACTCTCTCTCTCTCTC 58.983 54.545 0.00 0.00 0.00 3.20
882 1031 2.919602 ACCCAACTCTCTCTCTCTCTCT 59.080 50.000 0.00 0.00 0.00 3.10
883 1032 3.054361 ACCCAACTCTCTCTCTCTCTCTC 60.054 52.174 0.00 0.00 0.00 3.20
884 1033 3.200825 CCCAACTCTCTCTCTCTCTCTCT 59.799 52.174 0.00 0.00 0.00 3.10
885 1034 4.446371 CCAACTCTCTCTCTCTCTCTCTC 58.554 52.174 0.00 0.00 0.00 3.20
886 1035 4.163078 CCAACTCTCTCTCTCTCTCTCTCT 59.837 50.000 0.00 0.00 0.00 3.10
887 1036 5.363868 CCAACTCTCTCTCTCTCTCTCTCTA 59.636 48.000 0.00 0.00 0.00 2.43
888 1037 6.042552 CCAACTCTCTCTCTCTCTCTCTCTAT 59.957 46.154 0.00 0.00 0.00 1.98
889 1038 7.233553 CCAACTCTCTCTCTCTCTCTCTCTATA 59.766 44.444 0.00 0.00 0.00 1.31
890 1039 8.811017 CAACTCTCTCTCTCTCTCTCTCTATAT 58.189 40.741 0.00 0.00 0.00 0.86
1137 1553 4.641645 CTGTGCGGCAAGGACCCA 62.642 66.667 3.23 0.00 40.82 4.51
1256 1672 6.926272 GGAGACAACTATGATTTCGCTTCTAT 59.074 38.462 0.00 0.00 0.00 1.98
1396 1812 2.825836 GCAAGGATCCCACCTGCG 60.826 66.667 8.55 0.00 40.49 5.18
1431 1847 1.100510 TCGAATGCTACGGTACAGCT 58.899 50.000 5.40 0.00 39.83 4.24
1485 1901 0.324943 ACCAGGACGCCATATATGCC 59.675 55.000 7.24 3.29 0.00 4.40
1515 1931 1.571460 CTTCGTGAGCTGTTGTGCC 59.429 57.895 0.00 0.00 0.00 5.01
1542 1967 2.049063 ACGAGTGAAGAGTGCCGC 60.049 61.111 0.00 0.00 0.00 6.53
1607 2107 6.829229 TTCAGAGTGCTTCATTCATTCATT 57.171 33.333 0.00 0.00 0.00 2.57
1608 2108 6.432607 TCAGAGTGCTTCATTCATTCATTC 57.567 37.500 0.00 0.00 0.00 2.67
1609 2109 5.941647 TCAGAGTGCTTCATTCATTCATTCA 59.058 36.000 0.00 0.00 0.00 2.57
1611 2111 7.122204 TCAGAGTGCTTCATTCATTCATTCATT 59.878 33.333 0.00 0.00 0.00 2.57
1612 2112 7.432545 CAGAGTGCTTCATTCATTCATTCATTC 59.567 37.037 0.00 0.00 0.00 2.67
1613 2113 7.122204 AGAGTGCTTCATTCATTCATTCATTCA 59.878 33.333 0.00 0.00 0.00 2.57
1614 2114 7.782049 AGTGCTTCATTCATTCATTCATTCAT 58.218 30.769 0.00 0.00 0.00 2.57
1615 2115 7.706607 AGTGCTTCATTCATTCATTCATTCATG 59.293 33.333 0.00 0.00 0.00 3.07
1616 2116 7.491372 GTGCTTCATTCATTCATTCATTCATGT 59.509 33.333 0.00 0.00 0.00 3.21
1617 2117 7.491048 TGCTTCATTCATTCATTCATTCATGTG 59.509 33.333 0.00 0.00 0.00 3.21
1618 2118 7.491372 GCTTCATTCATTCATTCATTCATGTGT 59.509 33.333 0.00 0.00 0.00 3.72
1619 2119 9.366216 CTTCATTCATTCATTCATTCATGTGTT 57.634 29.630 0.00 0.00 0.00 3.32
1750 2282 9.750125 GTGGTAAATAATTTTTGGATGATCTCC 57.250 33.333 0.00 0.00 45.19 3.71
1884 2483 5.011635 GGTTACAATCATGGTTTCTTTGGGT 59.988 40.000 0.00 0.00 0.00 4.51
1885 2486 4.871933 ACAATCATGGTTTCTTTGGGTC 57.128 40.909 0.00 0.00 0.00 4.46
1886 2487 4.222336 ACAATCATGGTTTCTTTGGGTCA 58.778 39.130 0.00 0.00 0.00 4.02
1887 2488 4.281688 ACAATCATGGTTTCTTTGGGTCAG 59.718 41.667 0.00 0.00 0.00 3.51
1888 2489 3.874383 TCATGGTTTCTTTGGGTCAGA 57.126 42.857 0.00 0.00 0.00 3.27
1893 2494 3.951680 TGGTTTCTTTGGGTCAGAAGAAC 59.048 43.478 0.00 0.00 40.49 3.01
1896 2497 5.768164 GGTTTCTTTGGGTCAGAAGAACATA 59.232 40.000 0.00 0.00 40.49 2.29
1906 2510 6.768381 GGGTCAGAAGAACATAATAGAAAGGG 59.232 42.308 0.00 0.00 31.21 3.95
1907 2511 7.365652 GGGTCAGAAGAACATAATAGAAAGGGA 60.366 40.741 0.00 0.00 31.21 4.20
1910 2514 9.449719 TCAGAAGAACATAATAGAAAGGGAAAC 57.550 33.333 0.00 0.00 0.00 2.78
1911 2515 8.391106 CAGAAGAACATAATAGAAAGGGAAACG 58.609 37.037 0.00 0.00 0.00 3.60
1912 2516 8.101419 AGAAGAACATAATAGAAAGGGAAACGT 58.899 33.333 0.00 0.00 0.00 3.99
1913 2517 8.631480 AAGAACATAATAGAAAGGGAAACGTT 57.369 30.769 0.00 0.00 40.85 3.99
1921 2597 3.513680 AAAGGGAAACGTTTGGTTCAC 57.486 42.857 20.10 4.89 45.92 3.18
1923 2599 1.104630 GGGAAACGTTTGGTTCACCA 58.895 50.000 20.10 0.00 45.94 4.17
1936 2612 5.004922 TGGTTCACCAAAGACAACAAATC 57.995 39.130 0.00 0.00 44.35 2.17
1937 2613 4.142049 TGGTTCACCAAAGACAACAAATCC 60.142 41.667 0.00 0.00 44.35 3.01
1938 2614 3.980646 TCACCAAAGACAACAAATCCG 57.019 42.857 0.00 0.00 0.00 4.18
1941 2617 4.041723 CACCAAAGACAACAAATCCGAAC 58.958 43.478 0.00 0.00 0.00 3.95
1944 2620 5.105752 CCAAAGACAACAAATCCGAACAAA 58.894 37.500 0.00 0.00 0.00 2.83
1946 2622 6.074356 CCAAAGACAACAAATCCGAACAAATC 60.074 38.462 0.00 0.00 0.00 2.17
1949 2625 4.616953 ACAACAAATCCGAACAAATCCAC 58.383 39.130 0.00 0.00 0.00 4.02
1951 2627 3.226777 ACAAATCCGAACAAATCCACCA 58.773 40.909 0.00 0.00 0.00 4.17
1953 2629 4.100189 ACAAATCCGAACAAATCCACCAAA 59.900 37.500 0.00 0.00 0.00 3.28
1954 2630 4.519540 AATCCGAACAAATCCACCAAAG 57.480 40.909 0.00 0.00 0.00 2.77
1961 3273 5.278463 CGAACAAATCCACCAAAGACAGATT 60.278 40.000 0.00 0.00 0.00 2.40
1988 3300 2.698855 ATCCACCAAAGACAGATCCG 57.301 50.000 0.00 0.00 0.00 4.18
2008 3320 2.430465 GCTGAAGACACACATCCACAT 58.570 47.619 0.00 0.00 0.00 3.21
2011 3323 1.470098 GAAGACACACATCCACATGCC 59.530 52.381 0.00 0.00 32.57 4.40
2015 3327 1.304381 ACACATCCACATGCCCACC 60.304 57.895 0.00 0.00 32.57 4.61
2018 3330 1.152902 CATCCACATGCCCACCGAT 60.153 57.895 0.00 0.00 0.00 4.18
2024 3336 2.592574 ATGCCCACCGATGATGCG 60.593 61.111 0.00 0.00 0.00 4.73
2056 3368 1.684734 GAACGGGGACTAGGCAGGA 60.685 63.158 0.00 0.00 0.00 3.86
2077 3389 7.148018 GCAGGAAGACATTTATTCCATCTTCAA 60.148 37.037 7.94 0.00 46.21 2.69
2103 3415 2.125912 CGCCGTCTCACCTTCCTG 60.126 66.667 0.00 0.00 0.00 3.86
2105 3417 1.216710 GCCGTCTCACCTTCCTGAG 59.783 63.158 0.00 0.00 39.35 3.35
2121 3433 0.108585 TGAGCAGGACACAAACCCTC 59.891 55.000 0.00 0.00 0.00 4.30
2136 3448 5.931724 ACAAACCCTCACAAAACTCAAAAAG 59.068 36.000 0.00 0.00 0.00 2.27
2137 3449 5.993748 AACCCTCACAAAACTCAAAAAGA 57.006 34.783 0.00 0.00 0.00 2.52
2138 3450 6.544928 AACCCTCACAAAACTCAAAAAGAT 57.455 33.333 0.00 0.00 0.00 2.40
2139 3451 6.149129 ACCCTCACAAAACTCAAAAAGATC 57.851 37.500 0.00 0.00 0.00 2.75
2140 3452 5.893824 ACCCTCACAAAACTCAAAAAGATCT 59.106 36.000 0.00 0.00 0.00 2.75
2141 3453 7.060421 ACCCTCACAAAACTCAAAAAGATCTA 58.940 34.615 0.00 0.00 0.00 1.98
2185 3498 4.222847 GCCGGGATCCACTCCGTC 62.223 72.222 15.23 0.00 46.01 4.79
2199 3512 2.510906 CGTCCCCATGCCCCTAAG 59.489 66.667 0.00 0.00 0.00 2.18
2211 3524 2.732619 CCCTAAGGCCACCGGAGAC 61.733 68.421 9.46 0.00 0.00 3.36
2316 3630 3.525537 AGTTGATCCACGCTATCTGTTG 58.474 45.455 0.00 0.00 0.00 3.33
2335 3649 4.022762 TGTTGTTGTACTTGTGTTTGTGCT 60.023 37.500 0.00 0.00 0.00 4.40
2357 3701 2.749076 TGTGAAATGAATTGAGGGAGCG 59.251 45.455 0.00 0.00 0.00 5.03
2362 3706 4.437682 AATGAATTGAGGGAGCGGATAA 57.562 40.909 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.555967 CCACCGGGACATCCATTTTT 58.444 50.000 6.32 0.00 37.91 1.94
16 17 0.970427 GCCACCGGGACATCCATTTT 60.970 55.000 6.32 0.00 37.91 1.82
50 51 3.059982 CGCTCTGGGAGTCAACCA 58.940 61.111 0.00 0.00 36.38 3.67
87 88 0.842030 AGGATTCCACCAGCCACTCA 60.842 55.000 5.29 0.00 0.00 3.41
98 99 1.140452 GCTGATCTGCTGAGGATTCCA 59.860 52.381 16.60 0.00 0.00 3.53
123 124 0.837691 ACAGGCTCTGGGTCATCACA 60.838 55.000 7.06 0.00 35.51 3.58
178 179 8.106247 ACTAGAGGATTAGCTATTCTCTTTCG 57.894 38.462 19.34 13.37 45.42 3.46
193 194 4.819630 TGTTTTTGCGACAACTAGAGGATT 59.180 37.500 0.00 0.00 0.00 3.01
233 238 3.368822 GCACTGCTTGCCATTCCA 58.631 55.556 0.00 0.00 46.63 3.53
259 264 4.863415 GGCTTGTCCCAATTCCCA 57.137 55.556 0.00 0.00 0.00 4.37
268 273 2.985847 GGCACAGTGGGCTTGTCC 60.986 66.667 18.67 0.00 0.00 4.02
269 274 1.968540 GAGGCACAGTGGGCTTGTC 60.969 63.158 18.67 8.20 44.62 3.18
325 330 1.082756 CGAGTTCGCTTTGTGCCAC 60.083 57.895 0.00 0.00 38.78 5.01
384 389 2.231721 TGGTGATCACGAATTACCACGA 59.768 45.455 19.33 0.00 46.19 4.35
385 390 2.612604 TGGTGATCACGAATTACCACG 58.387 47.619 19.33 0.00 46.19 4.94
444 498 3.515286 GCTCCGGATCCGACGTCA 61.515 66.667 35.42 12.03 42.83 4.35
538 613 7.819900 GGTTCTTACTCGGATCATTTAGCATAT 59.180 37.037 0.00 0.00 0.00 1.78
554 629 3.929610 CAGCTACAGCAAGGTTCTTACTC 59.070 47.826 3.70 0.00 45.16 2.59
557 632 2.027192 CCCAGCTACAGCAAGGTTCTTA 60.027 50.000 3.70 0.00 45.16 2.10
560 635 1.308783 GCCCAGCTACAGCAAGGTTC 61.309 60.000 3.70 0.00 45.16 3.62
571 646 3.951563 ATAGTTGAAATGGCCCAGCTA 57.048 42.857 0.00 2.76 32.22 3.32
595 670 1.140452 AGTGGAGAGCCTGCATACATG 59.860 52.381 0.00 0.00 33.78 3.21
596 671 1.415659 GAGTGGAGAGCCTGCATACAT 59.584 52.381 0.00 0.00 33.78 2.29
597 672 0.826715 GAGTGGAGAGCCTGCATACA 59.173 55.000 0.00 0.00 33.78 2.29
598 673 1.118838 AGAGTGGAGAGCCTGCATAC 58.881 55.000 0.00 0.00 33.78 2.39
599 674 2.091610 ACTAGAGTGGAGAGCCTGCATA 60.092 50.000 0.00 0.00 33.78 3.14
600 675 1.342874 ACTAGAGTGGAGAGCCTGCAT 60.343 52.381 0.00 0.00 33.78 3.96
601 676 0.040351 ACTAGAGTGGAGAGCCTGCA 59.960 55.000 0.00 0.00 34.31 4.41
602 677 0.459489 CACTAGAGTGGAGAGCCTGC 59.541 60.000 0.00 0.00 42.10 4.85
612 687 5.934625 AGCTGACATTTTTACCACTAGAGTG 59.065 40.000 0.00 2.50 45.23 3.51
613 688 6.115448 AGCTGACATTTTTACCACTAGAGT 57.885 37.500 0.00 0.00 0.00 3.24
616 691 5.491982 AGGAGCTGACATTTTTACCACTAG 58.508 41.667 0.00 0.00 0.00 2.57
618 693 4.373156 AGGAGCTGACATTTTTACCACT 57.627 40.909 0.00 0.00 0.00 4.00
619 694 5.009610 TCAAAGGAGCTGACATTTTTACCAC 59.990 40.000 0.00 0.00 0.00 4.16
620 695 5.136828 TCAAAGGAGCTGACATTTTTACCA 58.863 37.500 0.00 0.00 0.00 3.25
622 697 5.920840 GGTTCAAAGGAGCTGACATTTTTAC 59.079 40.000 0.00 0.00 0.00 2.01
623 698 5.596361 TGGTTCAAAGGAGCTGACATTTTTA 59.404 36.000 0.00 0.00 0.00 1.52
624 699 4.405358 TGGTTCAAAGGAGCTGACATTTTT 59.595 37.500 0.00 0.00 0.00 1.94
626 701 3.565307 TGGTTCAAAGGAGCTGACATTT 58.435 40.909 0.00 0.00 0.00 2.32
630 705 3.686726 CAGTATGGTTCAAAGGAGCTGAC 59.313 47.826 0.00 0.00 0.00 3.51
632 707 3.679389 ACAGTATGGTTCAAAGGAGCTG 58.321 45.455 0.00 0.00 43.62 4.24
635 710 7.029563 GCAATTTACAGTATGGTTCAAAGGAG 58.970 38.462 0.00 0.00 43.62 3.69
637 712 6.099341 GGCAATTTACAGTATGGTTCAAAGG 58.901 40.000 0.00 0.00 43.62 3.11
638 713 6.099341 GGGCAATTTACAGTATGGTTCAAAG 58.901 40.000 0.00 0.00 43.62 2.77
639 714 5.540337 TGGGCAATTTACAGTATGGTTCAAA 59.460 36.000 0.00 0.00 43.62 2.69
640 715 5.080337 TGGGCAATTTACAGTATGGTTCAA 58.920 37.500 0.00 0.00 43.62 2.69
641 716 4.667573 TGGGCAATTTACAGTATGGTTCA 58.332 39.130 0.00 0.00 43.62 3.18
642 717 5.221244 GGATGGGCAATTTACAGTATGGTTC 60.221 44.000 0.00 0.00 43.62 3.62
643 718 4.649218 GGATGGGCAATTTACAGTATGGTT 59.351 41.667 0.00 0.00 43.62 3.67
645 720 4.473444 AGGATGGGCAATTTACAGTATGG 58.527 43.478 0.00 0.00 43.62 2.74
646 721 6.469782 AAAGGATGGGCAATTTACAGTATG 57.530 37.500 0.00 0.00 46.00 2.39
647 722 7.494922 AAAAAGGATGGGCAATTTACAGTAT 57.505 32.000 0.00 0.00 0.00 2.12
649 724 5.823861 AAAAAGGATGGGCAATTTACAGT 57.176 34.783 0.00 0.00 0.00 3.55
698 847 5.860182 CAGATGATACCAACAACAGCTTTTG 59.140 40.000 11.05 11.05 0.00 2.44
699 848 5.565439 GCAGATGATACCAACAACAGCTTTT 60.565 40.000 0.00 0.00 0.00 2.27
700 849 4.082571 GCAGATGATACCAACAACAGCTTT 60.083 41.667 0.00 0.00 0.00 3.51
701 850 3.441572 GCAGATGATACCAACAACAGCTT 59.558 43.478 0.00 0.00 0.00 3.74
702 851 3.012518 GCAGATGATACCAACAACAGCT 58.987 45.455 0.00 0.00 0.00 4.24
703 852 2.749076 TGCAGATGATACCAACAACAGC 59.251 45.455 0.00 0.00 0.00 4.40
704 853 3.127548 GGTGCAGATGATACCAACAACAG 59.872 47.826 0.00 0.00 34.61 3.16
705 854 3.081061 GGTGCAGATGATACCAACAACA 58.919 45.455 0.00 0.00 34.61 3.33
706 855 2.423538 GGGTGCAGATGATACCAACAAC 59.576 50.000 0.00 0.00 36.19 3.32
708 857 1.632920 TGGGTGCAGATGATACCAACA 59.367 47.619 0.00 0.00 36.19 3.33
710 859 2.040947 TGTTGGGTGCAGATGATACCAA 59.959 45.455 0.00 0.00 36.19 3.67
711 860 1.632920 TGTTGGGTGCAGATGATACCA 59.367 47.619 0.00 0.00 36.19 3.25
712 861 2.017049 GTGTTGGGTGCAGATGATACC 58.983 52.381 0.00 0.00 0.00 2.73
713 862 1.665679 CGTGTTGGGTGCAGATGATAC 59.334 52.381 0.00 0.00 0.00 2.24
714 863 1.277842 ACGTGTTGGGTGCAGATGATA 59.722 47.619 0.00 0.00 0.00 2.15
715 864 0.036732 ACGTGTTGGGTGCAGATGAT 59.963 50.000 0.00 0.00 0.00 2.45
716 865 0.682292 TACGTGTTGGGTGCAGATGA 59.318 50.000 0.00 0.00 0.00 2.92
717 866 0.796312 GTACGTGTTGGGTGCAGATG 59.204 55.000 0.00 0.00 0.00 2.90
718 867 0.669318 CGTACGTGTTGGGTGCAGAT 60.669 55.000 7.22 0.00 0.00 2.90
719 868 1.300311 CGTACGTGTTGGGTGCAGA 60.300 57.895 7.22 0.00 0.00 4.26
720 869 1.593209 ACGTACGTGTTGGGTGCAG 60.593 57.895 22.14 0.00 0.00 4.41
721 870 1.883544 CACGTACGTGTTGGGTGCA 60.884 57.895 34.48 0.00 40.91 4.57
722 871 2.932905 CACGTACGTGTTGGGTGC 59.067 61.111 34.48 0.00 40.91 5.01
723 872 1.225376 ATGCACGTACGTGTTGGGTG 61.225 55.000 39.56 20.18 46.90 4.61
724 873 1.070105 ATGCACGTACGTGTTGGGT 59.930 52.632 39.56 22.84 46.90 4.51
725 874 1.495509 CATGCACGTACGTGTTGGG 59.504 57.895 39.56 26.10 46.90 4.12
726 875 1.154488 GCATGCACGTACGTGTTGG 60.154 57.895 39.56 30.20 46.90 3.77
727 876 1.064582 TAGCATGCACGTACGTGTTG 58.935 50.000 39.56 35.05 46.90 3.33
728 877 1.785768 TTAGCATGCACGTACGTGTT 58.214 45.000 39.56 28.16 46.90 3.32
729 878 2.004583 ATTAGCATGCACGTACGTGT 57.995 45.000 39.56 26.36 46.90 4.49
731 880 8.523523 TTAATATAATTAGCATGCACGTACGT 57.476 30.769 21.98 16.72 0.00 3.57
732 881 7.630987 GCTTAATATAATTAGCATGCACGTACG 59.369 37.037 21.98 15.01 33.88 3.67
733 882 8.656849 AGCTTAATATAATTAGCATGCACGTAC 58.343 33.333 21.98 0.00 36.11 3.67
734 883 8.771920 AGCTTAATATAATTAGCATGCACGTA 57.228 30.769 21.98 6.66 36.11 3.57
735 884 7.148407 GGAGCTTAATATAATTAGCATGCACGT 60.148 37.037 21.98 1.04 36.11 4.49
736 885 7.182761 GGAGCTTAATATAATTAGCATGCACG 58.817 38.462 21.98 0.00 36.11 5.34
737 886 7.148407 ACGGAGCTTAATATAATTAGCATGCAC 60.148 37.037 21.98 0.00 36.11 4.57
738 887 6.878923 ACGGAGCTTAATATAATTAGCATGCA 59.121 34.615 21.98 0.00 36.11 3.96
739 888 7.308782 ACGGAGCTTAATATAATTAGCATGC 57.691 36.000 10.51 10.51 36.11 4.06
740 889 7.011482 GGGACGGAGCTTAATATAATTAGCATG 59.989 40.741 1.95 0.00 36.11 4.06
741 890 7.048512 GGGACGGAGCTTAATATAATTAGCAT 58.951 38.462 1.95 0.00 36.11 3.79
742 891 6.212791 AGGGACGGAGCTTAATATAATTAGCA 59.787 38.462 1.95 0.00 36.11 3.49
743 892 6.535508 CAGGGACGGAGCTTAATATAATTAGC 59.464 42.308 0.00 0.00 0.00 3.09
744 893 7.837863 TCAGGGACGGAGCTTAATATAATTAG 58.162 38.462 0.00 0.00 0.00 1.73
745 894 7.786046 TCAGGGACGGAGCTTAATATAATTA 57.214 36.000 0.00 0.00 0.00 1.40
746 895 6.681729 TCAGGGACGGAGCTTAATATAATT 57.318 37.500 0.00 0.00 0.00 1.40
747 896 6.287589 CTCAGGGACGGAGCTTAATATAAT 57.712 41.667 0.00 0.00 44.57 1.28
748 897 5.723672 CTCAGGGACGGAGCTTAATATAA 57.276 43.478 0.00 0.00 44.57 0.98
759 908 0.968901 AATACGCACTCAGGGACGGA 60.969 55.000 0.00 0.00 0.00 4.69
760 909 0.806102 CAATACGCACTCAGGGACGG 60.806 60.000 0.00 0.00 0.00 4.79
761 910 0.172578 TCAATACGCACTCAGGGACG 59.827 55.000 0.00 0.00 0.00 4.79
762 911 1.641577 GTCAATACGCACTCAGGGAC 58.358 55.000 0.00 0.00 0.00 4.46
763 912 0.535335 GGTCAATACGCACTCAGGGA 59.465 55.000 0.00 0.00 0.00 4.20
764 913 0.806102 CGGTCAATACGCACTCAGGG 60.806 60.000 0.00 0.00 0.00 4.45
765 914 0.806102 CCGGTCAATACGCACTCAGG 60.806 60.000 0.00 0.00 0.00 3.86
766 915 0.806102 CCCGGTCAATACGCACTCAG 60.806 60.000 0.00 0.00 0.00 3.35
767 916 1.216977 CCCGGTCAATACGCACTCA 59.783 57.895 0.00 0.00 0.00 3.41
768 917 2.171725 GCCCGGTCAATACGCACTC 61.172 63.158 0.00 0.00 0.00 3.51
769 918 2.125269 GCCCGGTCAATACGCACT 60.125 61.111 0.00 0.00 0.00 4.40
770 919 1.743995 AAGCCCGGTCAATACGCAC 60.744 57.895 0.00 0.00 0.00 5.34
771 920 1.743623 CAAGCCCGGTCAATACGCA 60.744 57.895 0.00 0.00 0.00 5.24
772 921 1.702491 GACAAGCCCGGTCAATACGC 61.702 60.000 0.00 0.00 35.36 4.42
773 922 1.418342 CGACAAGCCCGGTCAATACG 61.418 60.000 0.00 0.00 34.97 3.06
774 923 0.108520 TCGACAAGCCCGGTCAATAC 60.109 55.000 0.00 0.00 34.97 1.89
775 924 0.609151 TTCGACAAGCCCGGTCAATA 59.391 50.000 0.00 0.00 34.97 1.90
776 925 0.250553 TTTCGACAAGCCCGGTCAAT 60.251 50.000 0.00 0.00 34.97 2.57
777 926 0.250553 ATTTCGACAAGCCCGGTCAA 60.251 50.000 0.00 0.00 34.97 3.18
778 927 0.953471 CATTTCGACAAGCCCGGTCA 60.953 55.000 0.00 0.00 34.97 4.02
779 928 1.794222 CATTTCGACAAGCCCGGTC 59.206 57.895 0.00 0.00 0.00 4.79
780 929 2.332654 GCATTTCGACAAGCCCGGT 61.333 57.895 0.00 0.00 0.00 5.28
781 930 1.656818 ATGCATTTCGACAAGCCCGG 61.657 55.000 0.00 0.00 0.00 5.73
782 931 0.523968 CATGCATTTCGACAAGCCCG 60.524 55.000 0.00 0.00 0.00 6.13
783 932 0.803380 GCATGCATTTCGACAAGCCC 60.803 55.000 14.21 0.00 0.00 5.19
784 933 0.109179 TGCATGCATTTCGACAAGCC 60.109 50.000 18.46 0.00 29.74 4.35
785 934 0.986992 GTGCATGCATTTCGACAAGC 59.013 50.000 25.64 2.41 0.00 4.01
786 935 2.624316 AGTGCATGCATTTCGACAAG 57.376 45.000 25.64 0.00 0.00 3.16
787 936 4.495911 TTTAGTGCATGCATTTCGACAA 57.504 36.364 25.64 7.47 0.00 3.18
788 937 4.700268 ATTTAGTGCATGCATTTCGACA 57.300 36.364 25.64 0.33 0.00 4.35
789 938 5.220265 CCAAATTTAGTGCATGCATTTCGAC 60.220 40.000 25.64 9.80 0.00 4.20
790 939 4.863689 CCAAATTTAGTGCATGCATTTCGA 59.136 37.500 25.64 9.79 0.00 3.71
791 940 4.492895 GCCAAATTTAGTGCATGCATTTCG 60.493 41.667 25.64 13.20 0.00 3.46
792 941 4.392445 TGCCAAATTTAGTGCATGCATTTC 59.608 37.500 25.64 11.44 0.00 2.17
793 942 4.325119 TGCCAAATTTAGTGCATGCATTT 58.675 34.783 25.64 16.63 0.00 2.32
794 943 3.940319 TGCCAAATTTAGTGCATGCATT 58.060 36.364 25.64 22.70 0.00 3.56
795 944 3.613494 TGCCAAATTTAGTGCATGCAT 57.387 38.095 25.64 15.04 0.00 3.96
796 945 3.397849 TTGCCAAATTTAGTGCATGCA 57.602 38.095 18.46 18.46 33.08 3.96
797 946 4.186159 AGATTGCCAAATTTAGTGCATGC 58.814 39.130 11.82 11.82 33.08 4.06
798 947 5.750067 GGTAGATTGCCAAATTTAGTGCATG 59.250 40.000 9.25 0.00 33.08 4.06
799 948 5.658190 AGGTAGATTGCCAAATTTAGTGCAT 59.342 36.000 9.25 2.39 33.08 3.96
800 949 5.016173 AGGTAGATTGCCAAATTTAGTGCA 58.984 37.500 5.41 5.41 0.00 4.57
801 950 5.582689 AGGTAGATTGCCAAATTTAGTGC 57.417 39.130 0.00 0.00 0.00 4.40
802 951 7.865706 AGTAGGTAGATTGCCAAATTTAGTG 57.134 36.000 0.00 0.00 0.00 2.74
805 954 9.349713 CCATTAGTAGGTAGATTGCCAAATTTA 57.650 33.333 0.00 0.00 0.00 1.40
806 955 7.201911 GCCATTAGTAGGTAGATTGCCAAATTT 60.202 37.037 0.00 0.00 0.00 1.82
807 956 6.265422 GCCATTAGTAGGTAGATTGCCAAATT 59.735 38.462 0.00 0.00 0.00 1.82
808 957 5.770162 GCCATTAGTAGGTAGATTGCCAAAT 59.230 40.000 0.00 0.00 0.00 2.32
809 958 5.104109 AGCCATTAGTAGGTAGATTGCCAAA 60.104 40.000 0.00 0.00 0.00 3.28
810 959 4.412199 AGCCATTAGTAGGTAGATTGCCAA 59.588 41.667 0.00 0.00 0.00 4.52
811 960 3.973973 AGCCATTAGTAGGTAGATTGCCA 59.026 43.478 0.00 0.00 0.00 4.92
812 961 4.040461 TGAGCCATTAGTAGGTAGATTGCC 59.960 45.833 0.00 0.00 0.00 4.52
813 962 5.215252 TGAGCCATTAGTAGGTAGATTGC 57.785 43.478 0.00 0.00 0.00 3.56
814 963 6.169094 CCATGAGCCATTAGTAGGTAGATTG 58.831 44.000 0.00 0.00 0.00 2.67
815 964 5.280215 GCCATGAGCCATTAGTAGGTAGATT 60.280 44.000 0.00 0.00 34.35 2.40
816 965 4.223923 GCCATGAGCCATTAGTAGGTAGAT 59.776 45.833 0.00 0.00 34.35 1.98
817 966 3.578716 GCCATGAGCCATTAGTAGGTAGA 59.421 47.826 0.00 0.00 34.35 2.59
818 967 3.931578 GCCATGAGCCATTAGTAGGTAG 58.068 50.000 0.00 0.00 34.35 3.18
820 969 2.938956 GCCATGAGCCATTAGTAGGT 57.061 50.000 0.00 0.00 34.35 3.08
831 980 1.133790 GTGATGTTTGAGGCCATGAGC 59.866 52.381 5.01 0.00 42.60 4.26
832 981 2.439409 TGTGATGTTTGAGGCCATGAG 58.561 47.619 5.01 0.00 0.00 2.90
833 982 2.583024 TGTGATGTTTGAGGCCATGA 57.417 45.000 5.01 0.00 0.00 3.07
834 983 3.880047 ATTGTGATGTTTGAGGCCATG 57.120 42.857 5.01 0.00 0.00 3.66
835 984 4.771577 TGTTATTGTGATGTTTGAGGCCAT 59.228 37.500 5.01 0.00 0.00 4.40
836 985 4.148079 TGTTATTGTGATGTTTGAGGCCA 58.852 39.130 5.01 0.00 0.00 5.36
837 986 4.782019 TGTTATTGTGATGTTTGAGGCC 57.218 40.909 0.00 0.00 0.00 5.19
838 987 5.801947 GTGATGTTATTGTGATGTTTGAGGC 59.198 40.000 0.00 0.00 0.00 4.70
839 988 6.324819 GGTGATGTTATTGTGATGTTTGAGG 58.675 40.000 0.00 0.00 0.00 3.86
840 989 6.072008 TGGGTGATGTTATTGTGATGTTTGAG 60.072 38.462 0.00 0.00 0.00 3.02
841 990 5.772169 TGGGTGATGTTATTGTGATGTTTGA 59.228 36.000 0.00 0.00 0.00 2.69
842 991 6.023357 TGGGTGATGTTATTGTGATGTTTG 57.977 37.500 0.00 0.00 0.00 2.93
843 992 6.267471 AGTTGGGTGATGTTATTGTGATGTTT 59.733 34.615 0.00 0.00 0.00 2.83
844 993 5.774690 AGTTGGGTGATGTTATTGTGATGTT 59.225 36.000 0.00 0.00 0.00 2.71
845 994 5.324409 AGTTGGGTGATGTTATTGTGATGT 58.676 37.500 0.00 0.00 0.00 3.06
846 995 5.649395 AGAGTTGGGTGATGTTATTGTGATG 59.351 40.000 0.00 0.00 0.00 3.07
847 996 5.819991 AGAGTTGGGTGATGTTATTGTGAT 58.180 37.500 0.00 0.00 0.00 3.06
848 997 5.013079 AGAGAGTTGGGTGATGTTATTGTGA 59.987 40.000 0.00 0.00 0.00 3.58
849 998 5.248640 AGAGAGTTGGGTGATGTTATTGTG 58.751 41.667 0.00 0.00 0.00 3.33
850 999 5.249393 AGAGAGAGTTGGGTGATGTTATTGT 59.751 40.000 0.00 0.00 0.00 2.71
851 1000 5.738909 AGAGAGAGTTGGGTGATGTTATTG 58.261 41.667 0.00 0.00 0.00 1.90
852 1001 5.723887 AGAGAGAGAGTTGGGTGATGTTATT 59.276 40.000 0.00 0.00 0.00 1.40
853 1002 5.276440 AGAGAGAGAGTTGGGTGATGTTAT 58.724 41.667 0.00 0.00 0.00 1.89
854 1003 4.678256 AGAGAGAGAGTTGGGTGATGTTA 58.322 43.478 0.00 0.00 0.00 2.41
855 1004 3.513515 GAGAGAGAGAGTTGGGTGATGTT 59.486 47.826 0.00 0.00 0.00 2.71
856 1005 3.096092 GAGAGAGAGAGTTGGGTGATGT 58.904 50.000 0.00 0.00 0.00 3.06
857 1006 3.364549 AGAGAGAGAGAGTTGGGTGATG 58.635 50.000 0.00 0.00 0.00 3.07
858 1007 3.269381 AGAGAGAGAGAGAGTTGGGTGAT 59.731 47.826 0.00 0.00 0.00 3.06
859 1008 2.647299 AGAGAGAGAGAGAGTTGGGTGA 59.353 50.000 0.00 0.00 0.00 4.02
860 1009 3.016736 GAGAGAGAGAGAGAGTTGGGTG 58.983 54.545 0.00 0.00 0.00 4.61
861 1010 2.919602 AGAGAGAGAGAGAGAGTTGGGT 59.080 50.000 0.00 0.00 0.00 4.51
862 1011 3.200825 AGAGAGAGAGAGAGAGAGTTGGG 59.799 52.174 0.00 0.00 0.00 4.12
863 1012 4.163078 AGAGAGAGAGAGAGAGAGAGTTGG 59.837 50.000 0.00 0.00 0.00 3.77
864 1013 5.350504 AGAGAGAGAGAGAGAGAGAGTTG 57.649 47.826 0.00 0.00 0.00 3.16
865 1014 8.964533 ATATAGAGAGAGAGAGAGAGAGAGTT 57.035 38.462 0.00 0.00 0.00 3.01
916 1065 9.712250 AGATGCATTATCTTCTCTCCTCATATA 57.288 33.333 0.00 0.00 43.68 0.86
926 1075 6.183360 GCTTGATCGAGATGCATTATCTTCTC 60.183 42.308 14.59 1.18 46.12 2.87
1396 1812 3.188786 GATGTGAGCACCGTCGGC 61.189 66.667 12.28 0.00 0.00 5.54
1431 1847 4.094887 GCCTTGATGTAGCAAAATCTCGAA 59.905 41.667 0.00 0.00 0.00 3.71
1485 1901 3.127081 CTCACGAAGCAATCCATGTTG 57.873 47.619 0.00 0.00 0.00 3.33
1512 1928 1.686587 TCACTCGTCTTCTTCTTGGCA 59.313 47.619 0.00 0.00 0.00 4.92
1515 1931 4.679197 CACTCTTCACTCGTCTTCTTCTTG 59.321 45.833 0.00 0.00 0.00 3.02
1542 1967 5.181811 TCACTTGTTGAGGATGCATACTTTG 59.818 40.000 14.07 2.92 0.00 2.77
1684 2216 4.743493 TCCAAGAACAGCAAGAACAAAAC 58.257 39.130 0.00 0.00 0.00 2.43
1750 2282 8.291032 ACATGCAAACACATCCAAAAATTATTG 58.709 29.630 0.00 0.00 0.00 1.90
1753 2285 7.255035 CCAACATGCAAACACATCCAAAAATTA 60.255 33.333 0.00 0.00 0.00 1.40
1754 2286 6.459848 CCAACATGCAAACACATCCAAAAATT 60.460 34.615 0.00 0.00 0.00 1.82
1755 2287 5.008811 CCAACATGCAAACACATCCAAAAAT 59.991 36.000 0.00 0.00 0.00 1.82
1756 2288 4.334759 CCAACATGCAAACACATCCAAAAA 59.665 37.500 0.00 0.00 0.00 1.94
1757 2289 3.875727 CCAACATGCAAACACATCCAAAA 59.124 39.130 0.00 0.00 0.00 2.44
1758 2290 3.464907 CCAACATGCAAACACATCCAAA 58.535 40.909 0.00 0.00 0.00 3.28
1759 2291 2.806019 GCCAACATGCAAACACATCCAA 60.806 45.455 0.00 0.00 0.00 3.53
1760 2292 1.270199 GCCAACATGCAAACACATCCA 60.270 47.619 0.00 0.00 0.00 3.41
1884 2483 9.449719 GTTTCCCTTTCTATTATGTTCTTCTGA 57.550 33.333 0.00 0.00 0.00 3.27
1885 2486 8.391106 CGTTTCCCTTTCTATTATGTTCTTCTG 58.609 37.037 0.00 0.00 0.00 3.02
1886 2487 8.101419 ACGTTTCCCTTTCTATTATGTTCTTCT 58.899 33.333 0.00 0.00 0.00 2.85
1887 2488 8.265165 ACGTTTCCCTTTCTATTATGTTCTTC 57.735 34.615 0.00 0.00 0.00 2.87
1888 2489 8.631480 AACGTTTCCCTTTCTATTATGTTCTT 57.369 30.769 0.00 0.00 0.00 2.52
1893 2494 7.153217 ACCAAACGTTTCCCTTTCTATTATG 57.847 36.000 11.37 0.00 0.00 1.90
1896 2497 5.595133 TGAACCAAACGTTTCCCTTTCTATT 59.405 36.000 11.37 0.00 33.74 1.73
1915 2591 4.368315 GGATTTGTTGTCTTTGGTGAACC 58.632 43.478 0.00 0.00 0.00 3.62
1918 2594 3.546724 TCGGATTTGTTGTCTTTGGTGA 58.453 40.909 0.00 0.00 0.00 4.02
1921 2597 4.300189 TGTTCGGATTTGTTGTCTTTGG 57.700 40.909 0.00 0.00 0.00 3.28
1923 2599 5.983118 GGATTTGTTCGGATTTGTTGTCTTT 59.017 36.000 0.00 0.00 0.00 2.52
1926 2602 4.679654 GTGGATTTGTTCGGATTTGTTGTC 59.320 41.667 0.00 0.00 0.00 3.18
1929 2605 3.639094 TGGTGGATTTGTTCGGATTTGTT 59.361 39.130 0.00 0.00 0.00 2.83
1931 2607 3.932545 TGGTGGATTTGTTCGGATTTG 57.067 42.857 0.00 0.00 0.00 2.32
1936 2612 2.621055 TGTCTTTGGTGGATTTGTTCGG 59.379 45.455 0.00 0.00 0.00 4.30
1937 2613 3.563808 TCTGTCTTTGGTGGATTTGTTCG 59.436 43.478 0.00 0.00 0.00 3.95
1938 2614 5.712152 ATCTGTCTTTGGTGGATTTGTTC 57.288 39.130 0.00 0.00 0.00 3.18
1941 2617 4.455533 TCGAATCTGTCTTTGGTGGATTTG 59.544 41.667 0.00 0.00 32.24 2.32
1944 2620 3.981071 TCGAATCTGTCTTTGGTGGAT 57.019 42.857 0.00 0.00 0.00 3.41
1946 2622 3.138304 TGTTCGAATCTGTCTTTGGTGG 58.862 45.455 0.00 0.00 0.00 4.61
1949 2625 5.048782 TGGATTTGTTCGAATCTGTCTTTGG 60.049 40.000 0.00 0.00 36.50 3.28
1951 2627 5.048713 GGTGGATTTGTTCGAATCTGTCTTT 60.049 40.000 0.00 0.00 36.50 2.52
1953 2629 4.003648 GGTGGATTTGTTCGAATCTGTCT 58.996 43.478 0.00 0.00 36.50 3.41
1954 2630 3.751175 TGGTGGATTTGTTCGAATCTGTC 59.249 43.478 0.00 0.00 36.50 3.51
1961 3273 3.546724 TGTCTTTGGTGGATTTGTTCGA 58.453 40.909 0.00 0.00 0.00 3.71
1988 3300 1.882912 TGTGGATGTGTGTCTTCAGC 58.117 50.000 0.00 0.00 0.00 4.26
1992 3304 1.538047 GGCATGTGGATGTGTGTCTT 58.462 50.000 0.00 0.00 31.50 3.01
2008 3320 3.738429 CTCGCATCATCGGTGGGCA 62.738 63.158 12.56 1.28 0.00 5.36
2011 3323 1.946156 CGTCTCGCATCATCGGTGG 60.946 63.158 0.00 0.00 0.00 4.61
2024 3336 0.716108 CCGTTCTGTTGATGCGTCTC 59.284 55.000 7.58 1.35 0.00 3.36
2037 3349 1.686110 CCTGCCTAGTCCCCGTTCT 60.686 63.158 0.00 0.00 0.00 3.01
2040 3352 1.686110 CTTCCTGCCTAGTCCCCGT 60.686 63.158 0.00 0.00 0.00 5.28
2056 3368 7.067981 GCTCCTTGAAGATGGAATAAATGTCTT 59.932 37.037 0.00 0.00 32.23 3.01
2103 3415 0.108585 TGAGGGTTTGTGTCCTGCTC 59.891 55.000 0.00 0.00 32.74 4.26
2105 3417 0.465460 TGTGAGGGTTTGTGTCCTGC 60.465 55.000 0.00 0.00 32.74 4.85
2121 3433 8.261908 CGCTTTTAGATCTTTTTGAGTTTTGTG 58.738 33.333 0.00 0.00 0.00 3.33
2136 3448 1.541452 GGAGGGCTCCGCTTTTAGATC 60.541 57.143 0.00 0.00 40.36 2.75
2137 3449 0.470341 GGAGGGCTCCGCTTTTAGAT 59.530 55.000 0.00 0.00 40.36 1.98
2138 3450 1.905512 GGAGGGCTCCGCTTTTAGA 59.094 57.895 0.00 0.00 40.36 2.10
2139 3451 4.542075 GGAGGGCTCCGCTTTTAG 57.458 61.111 0.00 0.00 40.36 1.85
2233 3547 3.062466 GTTCCTTTGCCTCCCGCC 61.062 66.667 0.00 0.00 36.24 6.13
2263 3577 5.171476 CCTCGTAAATCTCTTTCAGCAGAA 58.829 41.667 0.00 0.00 0.00 3.02
2264 3578 4.748892 CCTCGTAAATCTCTTTCAGCAGA 58.251 43.478 0.00 0.00 0.00 4.26
2265 3579 3.308323 GCCTCGTAAATCTCTTTCAGCAG 59.692 47.826 0.00 0.00 0.00 4.24
2266 3580 3.262420 GCCTCGTAAATCTCTTTCAGCA 58.738 45.455 0.00 0.00 0.00 4.41
2267 3581 2.609916 GGCCTCGTAAATCTCTTTCAGC 59.390 50.000 0.00 0.00 0.00 4.26
2268 3582 3.118592 AGGGCCTCGTAAATCTCTTTCAG 60.119 47.826 0.00 0.00 0.00 3.02
2269 3583 2.838202 AGGGCCTCGTAAATCTCTTTCA 59.162 45.455 0.00 0.00 0.00 2.69
2295 3609 3.055819 ACAACAGATAGCGTGGATCAACT 60.056 43.478 0.00 0.00 0.00 3.16
2296 3610 3.262420 ACAACAGATAGCGTGGATCAAC 58.738 45.455 0.00 0.00 0.00 3.18
2297 3611 3.610040 ACAACAGATAGCGTGGATCAA 57.390 42.857 0.00 0.00 0.00 2.57
2298 3612 3.261580 CAACAACAGATAGCGTGGATCA 58.738 45.455 0.00 0.00 0.00 2.92
2316 3630 4.323336 CACAAGCACAAACACAAGTACAAC 59.677 41.667 0.00 0.00 0.00 3.32
2335 3649 3.191162 CGCTCCCTCAATTCATTTCACAA 59.809 43.478 0.00 0.00 0.00 3.33
2357 3701 6.490040 TGGCAATATTGGAGCTAACTTTATCC 59.510 38.462 17.02 5.05 0.00 2.59
2362 3706 4.646492 CCTTGGCAATATTGGAGCTAACTT 59.354 41.667 17.02 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.