Multiple sequence alignment - TraesCS2A01G001200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G001200 chr2A 100.000 4861 0 0 1 4861 533409 528549 0.000000e+00 8977.0
1 TraesCS2A01G001200 chr2A 92.174 230 18 0 3268 3497 529913 530142 4.690000e-85 326.0
2 TraesCS2A01G001200 chr2B 90.146 1644 85 26 929 2518 10781221 10782841 0.000000e+00 2067.0
3 TraesCS2A01G001200 chr2B 90.086 817 41 17 2590 3376 10782844 10783650 0.000000e+00 1024.0
4 TraesCS2A01G001200 chr2B 84.750 741 56 30 4139 4861 10784255 10784956 0.000000e+00 689.0
5 TraesCS2A01G001200 chr2B 85.056 629 49 23 3504 4122 10783680 10784273 2.500000e-167 599.0
6 TraesCS2A01G001200 chr2B 82.667 225 8 13 1 197 10777690 10777911 2.330000e-38 171.0
7 TraesCS2A01G001200 chr2B 91.509 106 5 3 816 921 54786086 54785985 5.070000e-30 143.0
8 TraesCS2A01G001200 chr2B 87.379 103 5 3 732 834 10781101 10781195 1.430000e-20 111.0
9 TraesCS2A01G001200 chr2B 77.612 201 18 12 341 536 10780232 10780410 4.000000e-16 97.1
10 TraesCS2A01G001200 chr2D 88.194 1135 74 29 920 2005 679190 678067 0.000000e+00 1299.0
11 TraesCS2A01G001200 chr2D 87.764 899 54 10 2495 3384 677485 676634 0.000000e+00 1000.0
12 TraesCS2A01G001200 chr2D 85.692 636 45 28 3494 4122 676622 676026 3.190000e-176 628.0
13 TraesCS2A01G001200 chr2D 82.914 755 52 36 4143 4860 676040 675326 4.160000e-170 608.0
14 TraesCS2A01G001200 chr2D 86.355 513 40 7 2028 2518 678072 677568 2.580000e-147 532.0
15 TraesCS2A01G001200 chr2D 90.948 232 18 3 1532 1761 648750924 648750694 4.730000e-80 309.0
16 TraesCS2A01G001200 chr2D 82.927 123 12 4 224 338 680351 680230 8.610000e-18 102.0
17 TraesCS2A01G001200 chr2D 79.412 170 12 11 376 534 680150 679993 1.110000e-16 99.0
18 TraesCS2A01G001200 chr3A 97.895 95 0 2 828 921 269549723 269549816 3.890000e-36 163.0
19 TraesCS2A01G001200 chr6A 100.000 87 0 0 837 923 61182111 61182197 1.400000e-35 161.0
20 TraesCS2A01G001200 chrUn 97.826 92 1 1 831 921 229545923 229545832 1.810000e-34 158.0
21 TraesCS2A01G001200 chr5D 95.745 94 4 0 833 926 182800834 182800927 8.430000e-33 152.0
22 TraesCS2A01G001200 chr4A 94.059 101 5 1 834 933 107430146 107430246 8.430000e-33 152.0
23 TraesCS2A01G001200 chr1A 94.898 98 2 3 826 921 107663291 107663195 3.030000e-32 150.0
24 TraesCS2A01G001200 chr6B 93.137 102 5 2 824 925 31785678 31785777 1.090000e-31 148.0
25 TraesCS2A01G001200 chr4B 93.137 102 4 3 830 930 664769825 664769726 3.920000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G001200 chr2A 528549 533409 4860 True 8977.000000 8977 100.000000 1 4861 1 chr2A.!!$R1 4860
1 TraesCS2A01G001200 chr2B 10777690 10784956 7266 False 679.728571 2067 85.385143 1 4861 7 chr2B.!!$F1 4860
2 TraesCS2A01G001200 chr2D 675326 680351 5025 True 609.714286 1299 84.751143 224 4860 7 chr2D.!!$R2 4636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 245 0.104120 AAAAAGTCAAACCGCCTGGC 59.896 50.000 9.11 9.11 39.70 4.85 F
254 2399 0.301088 CGACGTCAGCCTCGTACTAG 59.699 60.000 17.16 0.00 41.64 2.57 F
1311 4278 0.032017 AGAACGTGGGAGGAGGCTAT 60.032 55.000 0.00 0.00 0.00 2.97 F
1478 4454 0.326264 AAAGTTGATGCGCCTCCTCT 59.674 50.000 4.18 2.85 0.00 3.69 F
3230 6418 1.678101 GCAGTGTGCCAAGTTTCTCTT 59.322 47.619 0.00 0.00 37.42 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 4251 0.250295 CTCCCACGTTCTTGAAGCCA 60.250 55.000 0.00 0.00 0.0 4.75 R
1461 4437 1.220206 CAGAGGAGGCGCATCAACT 59.780 57.895 24.79 18.11 0.0 3.16 R
2624 5777 0.822532 GGAGATGCTGGGCCATGAAG 60.823 60.000 6.72 0.00 0.0 3.02 R
3472 6662 0.030504 TCAACATGTTTGCTGCCACG 59.969 50.000 8.77 0.00 0.0 4.94 R
4251 7465 0.248054 CAAGCACGACAACAAACGCT 60.248 50.000 0.00 0.00 0.0 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.782244 CTGCTCGCCGTCAACAGC 61.782 66.667 0.00 0.00 0.00 4.40
135 157 8.764287 CAACTTTGTTTCTTGTCTTGTCTTTTT 58.236 29.630 0.00 0.00 0.00 1.94
138 160 9.196552 CTTTGTTTCTTGTCTTGTCTTTTTCTT 57.803 29.630 0.00 0.00 0.00 2.52
182 211 5.332355 CGACTTTCTTACAACTCTTTCGTGG 60.332 44.000 0.00 0.00 0.00 4.94
185 214 4.931661 TCTTACAACTCTTTCGTGGAGT 57.068 40.909 0.00 0.00 44.73 3.85
187 216 6.010294 TCTTACAACTCTTTCGTGGAGTAG 57.990 41.667 7.75 3.60 42.39 2.57
190 219 4.618965 ACAACTCTTTCGTGGAGTAGAAC 58.381 43.478 7.75 0.00 42.39 3.01
191 220 4.098960 ACAACTCTTTCGTGGAGTAGAACA 59.901 41.667 7.75 0.00 42.39 3.18
192 221 4.931661 ACTCTTTCGTGGAGTAGAACAA 57.068 40.909 6.06 0.00 41.56 2.83
196 225 6.766467 ACTCTTTCGTGGAGTAGAACAATTTT 59.234 34.615 6.06 0.00 41.56 1.82
198 227 8.665643 TCTTTCGTGGAGTAGAACAATTTTAA 57.334 30.769 0.00 0.00 0.00 1.52
199 228 9.111613 TCTTTCGTGGAGTAGAACAATTTTAAA 57.888 29.630 0.00 0.00 0.00 1.52
200 229 9.724839 CTTTCGTGGAGTAGAACAATTTTAAAA 57.275 29.630 2.51 2.51 0.00 1.52
202 231 9.724839 TTCGTGGAGTAGAACAATTTTAAAAAG 57.275 29.630 4.44 3.65 0.00 2.27
203 232 8.895737 TCGTGGAGTAGAACAATTTTAAAAAGT 58.104 29.630 4.44 4.28 0.00 2.66
204 233 9.166126 CGTGGAGTAGAACAATTTTAAAAAGTC 57.834 33.333 4.44 0.00 0.00 3.01
211 240 7.680982 AGAACAATTTTAAAAAGTCAAACCGC 58.319 30.769 4.44 0.00 0.00 5.68
213 242 6.110033 ACAATTTTAAAAAGTCAAACCGCCT 58.890 32.000 4.44 0.00 0.00 5.52
214 243 6.036626 ACAATTTTAAAAAGTCAAACCGCCTG 59.963 34.615 4.44 0.00 0.00 4.85
215 244 3.719173 TTAAAAAGTCAAACCGCCTGG 57.281 42.857 0.00 0.00 42.84 4.45
216 245 0.104120 AAAAAGTCAAACCGCCTGGC 59.896 50.000 9.11 9.11 39.70 4.85
218 247 1.455383 AAAGTCAAACCGCCTGGCTG 61.455 55.000 17.92 13.27 39.70 4.85
219 248 4.043200 GTCAAACCGCCTGGCTGC 62.043 66.667 17.92 0.00 39.70 5.25
221 250 4.047059 CAAACCGCCTGGCTGCTG 62.047 66.667 17.92 7.69 39.70 4.41
254 2399 0.301088 CGACGTCAGCCTCGTACTAG 59.699 60.000 17.16 0.00 41.64 2.57
298 2458 1.846007 TCTCTCCTCTGCTCTTGTCC 58.154 55.000 0.00 0.00 0.00 4.02
305 2465 1.891811 CTCTGCTCTTGTCCTGTGAGA 59.108 52.381 0.00 0.00 0.00 3.27
306 2466 2.496871 CTCTGCTCTTGTCCTGTGAGAT 59.503 50.000 0.00 0.00 0.00 2.75
307 2467 2.233186 TCTGCTCTTGTCCTGTGAGATG 59.767 50.000 0.00 0.00 0.00 2.90
308 2468 1.973515 TGCTCTTGTCCTGTGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
309 2469 2.289257 TGCTCTTGTCCTGTGAGATGTG 60.289 50.000 0.00 0.00 0.00 3.21
310 2470 2.028658 GCTCTTGTCCTGTGAGATGTGA 60.029 50.000 0.00 0.00 0.00 3.58
311 2471 3.847542 CTCTTGTCCTGTGAGATGTGAG 58.152 50.000 0.00 0.00 0.00 3.51
312 2472 3.500343 TCTTGTCCTGTGAGATGTGAGA 58.500 45.455 0.00 0.00 0.00 3.27
315 2475 3.168292 TGTCCTGTGAGATGTGAGATGT 58.832 45.455 0.00 0.00 0.00 3.06
338 2507 8.792830 TGTGAGAGAGAAAAGAAAAGAAAGAA 57.207 30.769 0.00 0.00 0.00 2.52
339 2508 9.401058 TGTGAGAGAGAAAAGAAAAGAAAGAAT 57.599 29.630 0.00 0.00 0.00 2.40
398 2622 2.107141 CGCACCGGAGATCTTCCC 59.893 66.667 9.46 0.00 43.63 3.97
399 2623 2.107141 GCACCGGAGATCTTCCCG 59.893 66.667 9.46 14.42 43.63 5.14
400 2624 2.722201 GCACCGGAGATCTTCCCGT 61.722 63.158 18.55 9.69 43.63 5.28
401 2625 1.437986 CACCGGAGATCTTCCCGTC 59.562 63.158 18.55 0.00 43.63 4.79
402 2626 1.757340 ACCGGAGATCTTCCCGTCC 60.757 63.158 18.55 4.52 43.63 4.79
403 2627 2.722487 CGGAGATCTTCCCGTCCG 59.278 66.667 13.39 9.18 45.48 4.79
404 2628 2.119655 CGGAGATCTTCCCGTCCGT 61.120 63.158 13.39 0.00 45.62 4.69
405 2629 1.734748 GGAGATCTTCCCGTCCGTC 59.265 63.158 0.00 0.00 40.37 4.79
406 2630 1.734748 GAGATCTTCCCGTCCGTCC 59.265 63.158 0.00 0.00 0.00 4.79
407 2631 2.061182 GAGATCTTCCCGTCCGTCCG 62.061 65.000 0.00 0.00 0.00 4.79
438 2662 4.098894 TCCTTCCTTGTCGGTAAGGTAAT 58.901 43.478 15.24 0.00 45.94 1.89
439 2663 5.271598 TCCTTCCTTGTCGGTAAGGTAATA 58.728 41.667 15.24 0.00 45.94 0.98
440 2664 5.721000 TCCTTCCTTGTCGGTAAGGTAATAA 59.279 40.000 15.24 5.05 45.94 1.40
441 2665 6.047231 CCTTCCTTGTCGGTAAGGTAATAAG 58.953 44.000 15.24 11.85 45.94 1.73
442 2666 5.014808 TCCTTGTCGGTAAGGTAATAAGC 57.985 43.478 15.24 0.00 45.94 3.09
443 2667 4.124970 CCTTGTCGGTAAGGTAATAAGCC 58.875 47.826 9.60 0.00 41.85 4.35
444 2668 3.825143 TGTCGGTAAGGTAATAAGCCC 57.175 47.619 0.00 0.00 0.00 5.19
445 2669 2.435437 TGTCGGTAAGGTAATAAGCCCC 59.565 50.000 0.00 0.00 0.00 5.80
446 2670 2.049372 TCGGTAAGGTAATAAGCCCCC 58.951 52.381 0.00 0.00 0.00 5.40
447 2671 1.270465 CGGTAAGGTAATAAGCCCCCG 60.270 57.143 0.00 0.00 0.00 5.73
448 2672 1.544093 GGTAAGGTAATAAGCCCCCGC 60.544 57.143 0.00 0.00 0.00 6.13
498 2742 2.091333 ACCTCCATCTCCTTCTCCTCTC 60.091 54.545 0.00 0.00 0.00 3.20
550 2825 0.610785 GATCCCCGCCACCAAGAAAA 60.611 55.000 0.00 0.00 0.00 2.29
551 2826 0.611896 ATCCCCGCCACCAAGAAAAG 60.612 55.000 0.00 0.00 0.00 2.27
555 2830 1.000274 CCCGCCACCAAGAAAAGAAAG 60.000 52.381 0.00 0.00 0.00 2.62
556 2831 1.953686 CCGCCACCAAGAAAAGAAAGA 59.046 47.619 0.00 0.00 0.00 2.52
557 2832 2.360801 CCGCCACCAAGAAAAGAAAGAA 59.639 45.455 0.00 0.00 0.00 2.52
559 2834 4.229876 CGCCACCAAGAAAAGAAAGAATC 58.770 43.478 0.00 0.00 0.00 2.52
578 2904 3.562108 TCCCTTCCTTCCTTGTACTCT 57.438 47.619 0.00 0.00 0.00 3.24
586 2912 7.778853 CCTTCCTTCCTTGTACTCTAGTATGTA 59.221 40.741 0.00 0.00 32.54 2.29
587 2913 9.357161 CTTCCTTCCTTGTACTCTAGTATGTAT 57.643 37.037 0.00 0.00 32.54 2.29
588 2914 8.693120 TCCTTCCTTGTACTCTAGTATGTATG 57.307 38.462 0.00 0.00 32.54 2.39
589 2915 8.280084 TCCTTCCTTGTACTCTAGTATGTATGT 58.720 37.037 0.00 0.00 32.54 2.29
590 2916 9.570468 CCTTCCTTGTACTCTAGTATGTATGTA 57.430 37.037 0.00 0.00 32.54 2.29
638 2964 7.854557 ATGTATGTATGATTGATTCGGATGG 57.145 36.000 0.00 0.00 0.00 3.51
658 2984 2.358090 GGATGGTTTGGTGGATGGATGA 60.358 50.000 0.00 0.00 0.00 2.92
659 2985 2.988636 TGGTTTGGTGGATGGATGAA 57.011 45.000 0.00 0.00 0.00 2.57
660 2986 3.471430 TGGTTTGGTGGATGGATGAAT 57.529 42.857 0.00 0.00 0.00 2.57
661 2987 3.098377 TGGTTTGGTGGATGGATGAATG 58.902 45.455 0.00 0.00 0.00 2.67
662 2988 2.431782 GGTTTGGTGGATGGATGAATGG 59.568 50.000 0.00 0.00 0.00 3.16
663 2989 3.364549 GTTTGGTGGATGGATGAATGGA 58.635 45.455 0.00 0.00 0.00 3.41
664 2990 3.962718 GTTTGGTGGATGGATGAATGGAT 59.037 43.478 0.00 0.00 0.00 3.41
665 2991 3.232720 TGGTGGATGGATGAATGGATG 57.767 47.619 0.00 0.00 0.00 3.51
666 2992 2.515005 TGGTGGATGGATGAATGGATGT 59.485 45.455 0.00 0.00 0.00 3.06
667 2993 2.889045 GGTGGATGGATGAATGGATGTG 59.111 50.000 0.00 0.00 0.00 3.21
668 2994 2.295349 GTGGATGGATGAATGGATGTGC 59.705 50.000 0.00 0.00 0.00 4.57
669 2995 2.091775 TGGATGGATGAATGGATGTGCA 60.092 45.455 0.00 0.00 0.00 4.57
670 2996 2.960384 GGATGGATGAATGGATGTGCAA 59.040 45.455 0.00 0.00 0.00 4.08
671 2997 3.576982 GGATGGATGAATGGATGTGCAAT 59.423 43.478 0.00 0.00 0.00 3.56
672 2998 4.768448 GGATGGATGAATGGATGTGCAATA 59.232 41.667 0.00 0.00 0.00 1.90
673 2999 5.105877 GGATGGATGAATGGATGTGCAATAG 60.106 44.000 0.00 0.00 0.00 1.73
675 3001 3.057033 GGATGAATGGATGTGCAATAGGC 60.057 47.826 0.00 0.00 45.13 3.93
689 3015 5.449107 GCAATAGGCATTCATCATTGACT 57.551 39.130 0.00 0.00 43.97 3.41
690 3016 5.220381 GCAATAGGCATTCATCATTGACTG 58.780 41.667 0.00 0.00 43.97 3.51
693 3019 2.115348 GCATTCATCATTGACTGCCG 57.885 50.000 6.96 0.00 46.99 5.69
698 3650 3.057969 TCATCATTGACTGCCGTTTCT 57.942 42.857 0.00 0.00 0.00 2.52
737 3689 6.814506 ATCATTCTAGTTGATGCAATAGGC 57.185 37.500 9.26 0.00 45.13 3.93
762 3714 2.755836 TTCTTTCTTTCACTGCACGC 57.244 45.000 0.00 0.00 0.00 5.34
763 3715 0.944386 TCTTTCTTTCACTGCACGCC 59.056 50.000 0.00 0.00 0.00 5.68
764 3716 0.662619 CTTTCTTTCACTGCACGCCA 59.337 50.000 0.00 0.00 0.00 5.69
765 3717 0.380378 TTTCTTTCACTGCACGCCAC 59.620 50.000 0.00 0.00 0.00 5.01
828 3785 4.141779 TGCTCTATCATGCAACTGACTGAT 60.142 41.667 3.86 3.86 36.15 2.90
834 3791 8.427276 TCTATCATGCAACTGACTGATTATCTT 58.573 33.333 3.71 0.00 31.20 2.40
835 3792 9.702494 CTATCATGCAACTGACTGATTATCTTA 57.298 33.333 3.71 0.00 31.20 2.10
838 3795 9.481340 TCATGCAACTGACTGATTATCTTATAC 57.519 33.333 0.00 0.00 0.00 1.47
841 3798 9.534565 TGCAACTGACTGATTATCTTATACTTC 57.465 33.333 0.00 0.00 0.00 3.01
842 3799 8.983724 GCAACTGACTGATTATCTTATACTTCC 58.016 37.037 0.00 0.00 0.00 3.46
845 3802 9.084533 ACTGACTGATTATCTTATACTTCCTCC 57.915 37.037 0.00 0.00 0.00 4.30
849 3806 9.584008 ACTGATTATCTTATACTTCCTCCGTAA 57.416 33.333 0.00 0.00 0.00 3.18
863 3820 9.418839 ACTTCCTCCGTAAACTAATATAAGAGT 57.581 33.333 0.00 0.00 0.00 3.24
864 3821 9.680315 CTTCCTCCGTAAACTAATATAAGAGTG 57.320 37.037 0.00 0.00 0.00 3.51
865 3822 8.757982 TCCTCCGTAAACTAATATAAGAGTGT 57.242 34.615 0.00 0.00 0.00 3.55
866 3823 9.193806 TCCTCCGTAAACTAATATAAGAGTGTT 57.806 33.333 0.00 0.00 0.00 3.32
867 3824 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
915 3872 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
916 3873 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
917 3874 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
918 3875 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
949 3906 1.060713 GATGCCGTCGATTATCCACG 58.939 55.000 5.42 5.42 0.00 4.94
963 3924 2.380084 TCCACGGTTCTGTTATGCTC 57.620 50.000 0.00 0.00 0.00 4.26
966 3927 2.159627 CCACGGTTCTGTTATGCTCAAC 59.840 50.000 0.00 0.00 0.00 3.18
1030 3991 1.294659 CGAGAAAGAGGTGCCAGTGC 61.295 60.000 0.00 0.00 38.26 4.40
1266 4233 2.960688 GCTCGAGCCCCAGGAAAGT 61.961 63.158 27.22 0.00 34.31 2.66
1299 4266 0.877071 ATGCTGGCTTCAAGAACGTG 59.123 50.000 0.00 0.00 0.00 4.49
1302 4269 0.250295 CTGGCTTCAAGAACGTGGGA 60.250 55.000 0.00 0.00 0.00 4.37
1311 4278 0.032017 AGAACGTGGGAGGAGGCTAT 60.032 55.000 0.00 0.00 0.00 2.97
1344 4311 3.564644 CCGAGACGGTCAAGTACTATGAT 59.435 47.826 11.27 0.00 42.73 2.45
1394 4361 2.074576 CGAGATGATGATGGGTGATGC 58.925 52.381 0.00 0.00 0.00 3.91
1408 4375 1.375908 GATGCGGCTGAGTTCCACA 60.376 57.895 0.00 0.00 0.00 4.17
1447 4423 6.612306 GTTGTCCATGATGATGATGATGATG 58.388 40.000 0.00 0.00 0.00 3.07
1448 4424 6.121776 TGTCCATGATGATGATGATGATGA 57.878 37.500 0.00 0.00 0.00 2.92
1449 4425 6.721318 TGTCCATGATGATGATGATGATGAT 58.279 36.000 0.00 0.00 0.00 2.45
1461 4437 4.589647 TGATGATGATTCCCAGGACAAA 57.410 40.909 0.00 0.00 0.00 2.83
1462 4438 4.529897 TGATGATGATTCCCAGGACAAAG 58.470 43.478 0.00 0.00 0.00 2.77
1463 4439 4.018141 TGATGATGATTCCCAGGACAAAGT 60.018 41.667 0.00 0.00 0.00 2.66
1478 4454 0.326264 AAAGTTGATGCGCCTCCTCT 59.674 50.000 4.18 2.85 0.00 3.69
1486 4462 4.504916 CGCCTCCTCTGGACAGCG 62.505 72.222 10.49 10.49 40.99 5.18
1602 4578 1.771255 ACTAATCATCTCTGGGGTGCC 59.229 52.381 0.00 0.00 0.00 5.01
1608 4584 3.953775 CTCTGGGGTGCCGTGGTT 61.954 66.667 0.00 0.00 0.00 3.67
1710 4686 3.867493 CAGCAGTCAGGTATGTACACATG 59.133 47.826 0.00 0.00 37.15 3.21
1829 4822 5.924475 AGCAGTGTACATTACAGTTGTTC 57.076 39.130 0.00 0.00 40.21 3.18
1849 4846 5.942826 TGTTCAATATGGTCAGTAATGTGCA 59.057 36.000 0.00 0.00 0.00 4.57
1876 4883 3.571401 AGTTGCTTGCTCTGTTGCTTTAT 59.429 39.130 0.00 0.00 0.00 1.40
1958 4987 7.680442 AAGCTACTCTTTTCTGATTTTCCTC 57.320 36.000 0.00 0.00 0.00 3.71
2106 5135 9.624697 TGTGCATTGATATCTTTTCTTTGTTAC 57.375 29.630 3.98 0.00 0.00 2.50
2271 5320 4.512198 CACTGATTTTGCTTCATTTGGCAA 59.488 37.500 0.00 0.00 45.06 4.52
2406 5455 8.767478 AATTGGATTTGATTCAGATTTCACAC 57.233 30.769 0.00 0.00 0.00 3.82
2428 5477 8.892723 CACACTGGCTTAGTATGAATTATGAAA 58.107 33.333 0.00 0.00 35.83 2.69
2480 5529 9.787435 AACCAGTCATTTTAAGTATTGTCACTA 57.213 29.630 0.00 0.00 0.00 2.74
2509 5662 2.543848 TGTTACTGTTGCTTTCGAGCAG 59.456 45.455 1.08 0.00 46.21 4.24
2512 5665 2.135933 ACTGTTGCTTTCGAGCAGTAC 58.864 47.619 1.08 0.00 46.21 2.73
2526 5679 7.843490 TCGAGCAGTACTAGCAAAATTTATT 57.157 32.000 16.27 0.00 0.00 1.40
2544 5697 7.625828 ATTTATTTTGTGCAGTAGGGTACTC 57.374 36.000 0.00 0.00 36.76 2.59
2556 5709 6.073167 GCAGTAGGGTACTCTTTCTGTTTTTC 60.073 42.308 20.90 7.50 36.76 2.29
2562 5715 5.299531 GGTACTCTTTCTGTTTTTCCTTGCT 59.700 40.000 0.00 0.00 0.00 3.91
2563 5716 5.506686 ACTCTTTCTGTTTTTCCTTGCTC 57.493 39.130 0.00 0.00 0.00 4.26
2567 5720 6.119536 TCTTTCTGTTTTTCCTTGCTCAGTA 58.880 36.000 0.00 0.00 0.00 2.74
2572 5725 5.136828 TGTTTTTCCTTGCTCAGTAATGGA 58.863 37.500 0.00 0.00 0.00 3.41
2580 5733 2.237143 TGCTCAGTAATGGACCTGAAGG 59.763 50.000 0.00 0.00 42.17 3.46
2624 5777 3.054361 TCTCCTGGGCAGTTTATTCCTTC 60.054 47.826 0.00 0.00 0.00 3.46
2625 5778 2.919602 TCCTGGGCAGTTTATTCCTTCT 59.080 45.455 0.00 0.00 0.00 2.85
2675 5828 3.245048 CAGGGCGCAGTTTTTGTTTAAAG 59.755 43.478 10.83 0.00 0.00 1.85
2860 6048 6.988522 ACTTTTCGTTGCTATTTTTACCCAT 58.011 32.000 0.00 0.00 0.00 4.00
2876 6064 9.593134 TTTTTACCCATGTTCAATATTGCATAC 57.407 29.630 10.76 8.92 0.00 2.39
2944 6132 5.763204 TCCTGATTTCACTTTGGTTCAGTAC 59.237 40.000 0.00 0.00 30.97 2.73
3058 6246 6.777213 TTTTGGTTGCTACCTTTTGAAGTA 57.223 33.333 18.31 0.00 45.27 2.24
3059 6247 6.777213 TTTGGTTGCTACCTTTTGAAGTAA 57.223 33.333 18.31 0.00 45.27 2.24
3079 6267 9.614792 GAAGTAAGTATGGATACTGAAATGGTT 57.385 33.333 0.00 0.00 42.47 3.67
3089 6277 8.768397 TGGATACTGAAATGGTTACTATCAGTT 58.232 33.333 11.45 1.54 46.22 3.16
3090 6278 9.614792 GGATACTGAAATGGTTACTATCAGTTT 57.385 33.333 11.45 4.73 46.22 2.66
3094 6282 9.436957 ACTGAAATGGTTACTATCAGTTTACAG 57.563 33.333 1.13 0.00 46.22 2.74
3095 6283 9.436957 CTGAAATGGTTACTATCAGTTTACAGT 57.563 33.333 0.00 0.00 34.29 3.55
3230 6418 1.678101 GCAGTGTGCCAAGTTTCTCTT 59.322 47.619 0.00 0.00 37.42 2.85
3287 6476 3.904571 TCTGATTCAACATGTTTGCTGC 58.095 40.909 8.77 0.00 0.00 5.25
3328 6517 8.573885 CAGTGGAATACTCCGTAGTATCATTTA 58.426 37.037 0.68 0.00 45.85 1.40
3331 6520 9.139734 TGGAATACTCCGTAGTATCATTTACTT 57.860 33.333 0.68 0.00 45.85 2.24
3372 6562 9.180678 CAGTAAATTGGTTCTTGTCATTAACAC 57.819 33.333 0.00 0.00 37.70 3.32
3377 6567 6.371809 TGGTTCTTGTCATTAACACTGTTC 57.628 37.500 0.00 0.00 37.70 3.18
3378 6568 6.119536 TGGTTCTTGTCATTAACACTGTTCT 58.880 36.000 0.00 0.00 37.70 3.01
3384 6574 9.154847 TCTTGTCATTAACACTGTTCTCATATG 57.845 33.333 0.00 0.00 37.70 1.78
3385 6575 7.848223 TGTCATTAACACTGTTCTCATATGG 57.152 36.000 2.13 0.00 31.20 2.74
3387 6577 8.536175 TGTCATTAACACTGTTCTCATATGGTA 58.464 33.333 2.13 0.00 31.20 3.25
3388 6578 8.818057 GTCATTAACACTGTTCTCATATGGTAC 58.182 37.037 2.13 0.00 0.00 3.34
3389 6579 7.985184 TCATTAACACTGTTCTCATATGGTACC 59.015 37.037 4.43 4.43 0.00 3.34
3390 6580 5.755409 AACACTGTTCTCATATGGTACCA 57.245 39.130 18.99 18.99 0.00 3.25
3392 6582 6.313519 ACACTGTTCTCATATGGTACCAAT 57.686 37.500 20.76 10.97 0.00 3.16
3393 6583 6.115446 ACACTGTTCTCATATGGTACCAATG 58.885 40.000 20.76 21.30 0.00 2.82
3394 6584 6.115446 CACTGTTCTCATATGGTACCAATGT 58.885 40.000 20.76 5.03 0.00 2.71
3396 6586 7.768582 CACTGTTCTCATATGGTACCAATGTTA 59.231 37.037 20.76 7.08 0.00 2.41
3399 6589 9.119418 TGTTCTCATATGGTACCAATGTTAATG 57.881 33.333 20.76 14.70 0.00 1.90
3403 6593 9.559732 CTCATATGGTACCAATGTTAATGAGAA 57.440 33.333 26.58 12.48 34.31 2.87
3404 6594 9.559732 TCATATGGTACCAATGTTAATGAGAAG 57.440 33.333 20.76 0.00 0.00 2.85
3405 6595 9.559732 CATATGGTACCAATGTTAATGAGAAGA 57.440 33.333 20.76 0.00 0.00 2.87
3407 6597 7.681939 TGGTACCAATGTTAATGAGAAGAAC 57.318 36.000 13.60 0.00 0.00 3.01
3408 6598 6.657541 TGGTACCAATGTTAATGAGAAGAACC 59.342 38.462 13.60 0.00 0.00 3.62
3409 6599 6.657541 GGTACCAATGTTAATGAGAAGAACCA 59.342 38.462 7.15 0.00 0.00 3.67
3410 6600 7.175990 GGTACCAATGTTAATGAGAAGAACCAA 59.824 37.037 7.15 0.00 0.00 3.67
3411 6601 7.781324 ACCAATGTTAATGAGAAGAACCAAT 57.219 32.000 0.00 0.00 0.00 3.16
3412 6602 8.193953 ACCAATGTTAATGAGAAGAACCAATT 57.806 30.769 0.00 0.00 0.00 2.32
3413 6603 8.650490 ACCAATGTTAATGAGAAGAACCAATTT 58.350 29.630 0.00 0.00 0.00 1.82
3418 6608 9.567776 TGTTAATGAGAAGAACCAATTTACTGA 57.432 29.630 0.00 0.00 0.00 3.41
3419 6609 9.827411 GTTAATGAGAAGAACCAATTTACTGAC 57.173 33.333 0.00 0.00 0.00 3.51
3420 6610 7.454260 AATGAGAAGAACCAATTTACTGACC 57.546 36.000 0.00 0.00 0.00 4.02
3421 6611 4.994852 TGAGAAGAACCAATTTACTGACCG 59.005 41.667 0.00 0.00 0.00 4.79
3422 6612 3.751698 AGAAGAACCAATTTACTGACCGC 59.248 43.478 0.00 0.00 0.00 5.68
3423 6613 3.134574 AGAACCAATTTACTGACCGCA 57.865 42.857 0.00 0.00 0.00 5.69
3424 6614 3.686016 AGAACCAATTTACTGACCGCAT 58.314 40.909 0.00 0.00 0.00 4.73
3425 6615 4.839121 AGAACCAATTTACTGACCGCATA 58.161 39.130 0.00 0.00 0.00 3.14
3426 6616 4.634443 AGAACCAATTTACTGACCGCATAC 59.366 41.667 0.00 0.00 0.00 2.39
3427 6617 3.945346 ACCAATTTACTGACCGCATACA 58.055 40.909 0.00 0.00 0.00 2.29
3428 6618 4.328536 ACCAATTTACTGACCGCATACAA 58.671 39.130 0.00 0.00 0.00 2.41
3429 6619 4.394920 ACCAATTTACTGACCGCATACAAG 59.605 41.667 0.00 0.00 0.00 3.16
3430 6620 4.394920 CCAATTTACTGACCGCATACAAGT 59.605 41.667 0.00 0.00 0.00 3.16
3431 6621 5.106317 CCAATTTACTGACCGCATACAAGTT 60.106 40.000 0.00 0.00 0.00 2.66
3432 6622 6.092944 CCAATTTACTGACCGCATACAAGTTA 59.907 38.462 0.00 0.00 0.00 2.24
3433 6623 7.361371 CCAATTTACTGACCGCATACAAGTTAA 60.361 37.037 0.00 0.00 0.00 2.01
3434 6624 6.715344 TTTACTGACCGCATACAAGTTAAG 57.285 37.500 0.00 0.00 0.00 1.85
3435 6625 4.530710 ACTGACCGCATACAAGTTAAGA 57.469 40.909 0.00 0.00 0.00 2.10
3436 6626 4.890088 ACTGACCGCATACAAGTTAAGAA 58.110 39.130 0.00 0.00 0.00 2.52
3437 6627 5.302360 ACTGACCGCATACAAGTTAAGAAA 58.698 37.500 0.00 0.00 0.00 2.52
3438 6628 5.761234 ACTGACCGCATACAAGTTAAGAAAA 59.239 36.000 0.00 0.00 0.00 2.29
3439 6629 6.430000 ACTGACCGCATACAAGTTAAGAAAAT 59.570 34.615 0.00 0.00 0.00 1.82
3440 6630 6.607689 TGACCGCATACAAGTTAAGAAAATG 58.392 36.000 0.00 0.00 0.00 2.32
3441 6631 6.428465 TGACCGCATACAAGTTAAGAAAATGA 59.572 34.615 0.00 0.00 0.00 2.57
3442 6632 7.120579 TGACCGCATACAAGTTAAGAAAATGAT 59.879 33.333 0.00 0.00 0.00 2.45
3443 6633 8.500753 ACCGCATACAAGTTAAGAAAATGATA 57.499 30.769 0.00 0.00 0.00 2.15
3444 6634 8.395633 ACCGCATACAAGTTAAGAAAATGATAC 58.604 33.333 0.00 0.00 0.00 2.24
3445 6635 8.612619 CCGCATACAAGTTAAGAAAATGATACT 58.387 33.333 0.00 0.00 0.00 2.12
3459 6649 9.530633 AGAAAATGATACTACGAAGTATTCCAC 57.469 33.333 0.00 0.00 46.71 4.02
3460 6650 9.530633 GAAAATGATACTACGAAGTATTCCACT 57.469 33.333 0.00 0.00 46.71 4.00
3461 6651 8.873215 AAATGATACTACGAAGTATTCCACTG 57.127 34.615 0.00 0.00 46.71 3.66
3462 6652 7.584122 ATGATACTACGAAGTATTCCACTGT 57.416 36.000 0.00 0.00 46.71 3.55
3463 6653 8.687292 ATGATACTACGAAGTATTCCACTGTA 57.313 34.615 0.00 0.00 46.71 2.74
3464 6654 8.510243 TGATACTACGAAGTATTCCACTGTAA 57.490 34.615 0.00 0.00 46.71 2.41
3465 6655 8.959548 TGATACTACGAAGTATTCCACTGTAAA 58.040 33.333 0.00 0.00 46.71 2.01
3466 6656 9.962783 GATACTACGAAGTATTCCACTGTAAAT 57.037 33.333 0.00 0.00 46.71 1.40
3476 6666 9.321562 AGTATTCCACTGTAAATATAAACGTGG 57.678 33.333 16.52 16.52 39.48 4.94
3477 6667 6.425577 TTCCACTGTAAATATAAACGTGGC 57.574 37.500 17.18 0.00 38.75 5.01
3478 6668 5.489249 TCCACTGTAAATATAAACGTGGCA 58.511 37.500 17.18 0.00 38.75 4.92
3479 6669 5.583061 TCCACTGTAAATATAAACGTGGCAG 59.417 40.000 17.18 0.00 38.75 4.85
3480 6670 5.263185 CACTGTAAATATAAACGTGGCAGC 58.737 41.667 0.00 0.00 0.00 5.25
3481 6671 4.938832 ACTGTAAATATAAACGTGGCAGCA 59.061 37.500 0.00 0.00 0.00 4.41
3482 6672 5.413213 ACTGTAAATATAAACGTGGCAGCAA 59.587 36.000 0.00 0.00 0.00 3.91
3483 6673 6.072397 ACTGTAAATATAAACGTGGCAGCAAA 60.072 34.615 0.00 0.00 0.00 3.68
3484 6674 6.087522 TGTAAATATAAACGTGGCAGCAAAC 58.912 36.000 0.00 0.00 0.00 2.93
3485 6675 4.775058 AATATAAACGTGGCAGCAAACA 57.225 36.364 0.00 0.00 0.00 2.83
3486 6676 4.981806 ATATAAACGTGGCAGCAAACAT 57.018 36.364 0.00 0.00 0.00 2.71
3487 6677 2.414058 TAAACGTGGCAGCAAACATG 57.586 45.000 0.00 0.00 0.00 3.21
3488 6678 0.459489 AAACGTGGCAGCAAACATGT 59.541 45.000 0.00 0.00 38.40 3.21
3489 6679 0.459489 AACGTGGCAGCAAACATGTT 59.541 45.000 4.92 4.92 40.81 2.71
3490 6680 0.248990 ACGTGGCAGCAAACATGTTG 60.249 50.000 12.82 7.69 33.28 3.33
3491 6681 0.030504 CGTGGCAGCAAACATGTTGA 59.969 50.000 12.82 0.00 0.00 3.18
3492 6682 1.774639 GTGGCAGCAAACATGTTGAG 58.225 50.000 12.82 9.31 0.00 3.02
3493 6683 1.067516 GTGGCAGCAAACATGTTGAGT 59.932 47.619 12.82 0.00 0.00 3.41
3494 6684 1.337703 TGGCAGCAAACATGTTGAGTC 59.662 47.619 12.82 4.77 0.00 3.36
3495 6685 1.337703 GGCAGCAAACATGTTGAGTCA 59.662 47.619 12.82 0.00 0.00 3.41
3496 6686 2.606308 GGCAGCAAACATGTTGAGTCAG 60.606 50.000 12.82 2.01 0.00 3.51
3497 6687 2.033801 GCAGCAAACATGTTGAGTCAGT 59.966 45.455 12.82 0.00 0.00 3.41
3498 6688 3.250762 GCAGCAAACATGTTGAGTCAGTA 59.749 43.478 12.82 0.00 0.00 2.74
3499 6689 4.261155 GCAGCAAACATGTTGAGTCAGTAA 60.261 41.667 12.82 0.00 0.00 2.24
3500 6690 5.563475 GCAGCAAACATGTTGAGTCAGTAAT 60.563 40.000 12.82 0.00 0.00 1.89
3501 6691 6.348458 GCAGCAAACATGTTGAGTCAGTAATA 60.348 38.462 12.82 0.00 0.00 0.98
3502 6692 7.627088 GCAGCAAACATGTTGAGTCAGTAATAT 60.627 37.037 12.82 0.00 0.00 1.28
3512 6702 7.764443 TGTTGAGTCAGTAATATACCTTCTTGC 59.236 37.037 0.00 0.00 0.00 4.01
3562 6753 7.652300 AGTTTGTTTTGTTTTCAAGTCTTCC 57.348 32.000 0.00 0.00 41.09 3.46
3563 6754 7.441836 AGTTTGTTTTGTTTTCAAGTCTTCCT 58.558 30.769 0.00 0.00 41.09 3.36
3564 6755 8.581578 AGTTTGTTTTGTTTTCAAGTCTTCCTA 58.418 29.630 0.00 0.00 41.09 2.94
3567 6758 8.795842 TGTTTTGTTTTCAAGTCTTCCTAGTA 57.204 30.769 0.00 0.00 41.09 1.82
3569 6760 8.890718 GTTTTGTTTTCAAGTCTTCCTAGTAGT 58.109 33.333 0.00 0.00 41.09 2.73
3571 6762 9.538508 TTTGTTTTCAAGTCTTCCTAGTAGTAC 57.461 33.333 0.00 0.00 41.09 2.73
3572 6763 7.365741 TGTTTTCAAGTCTTCCTAGTAGTACG 58.634 38.462 0.00 0.00 0.00 3.67
3573 6764 7.013655 TGTTTTCAAGTCTTCCTAGTAGTACGT 59.986 37.037 0.00 0.00 0.00 3.57
3574 6765 6.492007 TTCAAGTCTTCCTAGTAGTACGTG 57.508 41.667 0.00 0.00 0.00 4.49
3575 6766 5.555017 TCAAGTCTTCCTAGTAGTACGTGT 58.445 41.667 0.00 0.00 0.00 4.49
3576 6767 6.000219 TCAAGTCTTCCTAGTAGTACGTGTT 59.000 40.000 0.00 0.00 0.00 3.32
3593 6784 4.512571 ACGTGTTAAACATACAGTTCACCC 59.487 41.667 0.00 0.00 40.26 4.61
3633 6824 4.079970 CAGTGTCCTAACTGGTCAGACTA 58.920 47.826 4.84 0.00 43.22 2.59
3637 6828 6.270231 AGTGTCCTAACTGGTCAGACTATTTT 59.730 38.462 4.84 0.00 34.68 1.82
3648 6839 9.442047 CTGGTCAGACTATTTTCTTTAATGAGT 57.558 33.333 0.00 0.00 0.00 3.41
3768 6969 8.393366 CACTGATATCGTCTTGATGACAAAATT 58.607 33.333 0.00 0.00 45.60 1.82
3804 7005 0.327924 ATTCCTGATGTCCGTTGCCA 59.672 50.000 0.00 0.00 0.00 4.92
3814 7015 1.812571 GTCCGTTGCCATCTGTGAATT 59.187 47.619 0.00 0.00 0.00 2.17
3866 7069 5.614308 TGTTCTGTTGTCAGTTGATGATCT 58.386 37.500 0.00 0.00 40.92 2.75
3867 7070 5.467735 TGTTCTGTTGTCAGTTGATGATCTG 59.532 40.000 0.00 0.00 40.92 2.90
3905 7113 2.879026 GGTCTGTTTGTGGTCTTCTTCC 59.121 50.000 0.00 0.00 0.00 3.46
4004 7215 1.341852 TCGTGACAATGACGAAAGGGA 59.658 47.619 0.00 0.00 42.63 4.20
4061 7272 0.104671 TTTGCTTGTTGCCAGGCTTC 59.895 50.000 14.15 6.24 43.63 3.86
4122 7333 2.031191 CGTCGTACCTTTGCACTGTTTT 59.969 45.455 0.00 0.00 0.00 2.43
4123 7334 3.486209 CGTCGTACCTTTGCACTGTTTTT 60.486 43.478 0.00 0.00 0.00 1.94
4149 7360 2.147436 TTTTTGCATCGGACCTTTGC 57.853 45.000 8.22 8.22 36.91 3.68
4150 7361 1.035923 TTTTGCATCGGACCTTTGCA 58.964 45.000 12.68 12.68 44.12 4.08
4151 7362 0.313672 TTTGCATCGGACCTTTGCAC 59.686 50.000 15.48 0.00 45.35 4.57
4152 7363 0.537143 TTGCATCGGACCTTTGCACT 60.537 50.000 15.48 0.00 45.35 4.40
4153 7364 1.236616 TGCATCGGACCTTTGCACTG 61.237 55.000 12.68 0.00 41.18 3.66
4154 7365 1.237285 GCATCGGACCTTTGCACTGT 61.237 55.000 9.87 0.00 36.40 3.55
4155 7366 1.238439 CATCGGACCTTTGCACTGTT 58.762 50.000 0.00 0.00 0.00 3.16
4156 7367 1.608590 CATCGGACCTTTGCACTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
4193 7404 4.626172 CGCCCTTTCAAGTTTCTACTACTC 59.374 45.833 0.00 0.00 33.17 2.59
4194 7405 5.548406 GCCCTTTCAAGTTTCTACTACTCA 58.452 41.667 0.00 0.00 33.17 3.41
4195 7406 6.174049 GCCCTTTCAAGTTTCTACTACTCAT 58.826 40.000 0.00 0.00 33.17 2.90
4209 7423 7.383687 TCTACTACTCATTTTTGACGAATGGT 58.616 34.615 0.00 0.00 35.66 3.55
4247 7461 2.164827 TGCATGCTGTGAAATCCATGAC 59.835 45.455 20.33 0.00 37.78 3.06
4251 7465 3.220940 TGCTGTGAAATCCATGACAACA 58.779 40.909 0.00 0.00 0.00 3.33
4253 7467 3.829948 CTGTGAAATCCATGACAACAGC 58.170 45.455 0.00 0.00 0.00 4.40
4271 7485 0.247894 GCGTTTGTTGTCGTGCTTGA 60.248 50.000 0.00 0.00 0.00 3.02
4319 7536 1.981256 TTGTGTTCCCTCCAAAGCTC 58.019 50.000 0.00 0.00 0.00 4.09
4348 7565 7.461182 TTTGGTCGTTCAGAATTTATCCATT 57.539 32.000 0.00 0.00 0.00 3.16
4351 7568 8.568676 TGGTCGTTCAGAATTTATCCATTAAA 57.431 30.769 0.00 0.00 34.37 1.52
4352 7569 8.455682 TGGTCGTTCAGAATTTATCCATTAAAC 58.544 33.333 0.00 0.00 32.71 2.01
4353 7570 7.638683 GGTCGTTCAGAATTTATCCATTAAACG 59.361 37.037 0.00 0.00 37.64 3.60
4354 7571 8.173130 GTCGTTCAGAATTTATCCATTAAACGT 58.827 33.333 0.00 0.00 37.57 3.99
4355 7572 8.723311 TCGTTCAGAATTTATCCATTAAACGTT 58.277 29.630 0.00 0.00 37.57 3.99
4356 7573 8.785101 CGTTCAGAATTTATCCATTAAACGTTG 58.215 33.333 0.00 0.00 32.71 4.10
4384 7609 7.568199 AGTACTTGTTCACTTGTTGCTAATT 57.432 32.000 0.00 0.00 0.00 1.40
4400 7625 8.033626 TGTTGCTAATTCATTTCATACATTGCA 58.966 29.630 0.00 0.00 0.00 4.08
4401 7626 7.990541 TGCTAATTCATTTCATACATTGCAC 57.009 32.000 0.00 0.00 0.00 4.57
4404 7629 4.431661 TTCATTTCATACATTGCACGCA 57.568 36.364 0.00 0.00 0.00 5.24
4410 7635 3.469739 TCATACATTGCACGCATCTCAT 58.530 40.909 0.00 0.00 0.00 2.90
4453 7678 3.088194 TCACGCGTAAATCTGGATACC 57.912 47.619 13.44 0.00 0.00 2.73
4481 7706 8.676401 CACCAAAAATCCAAAGAAAATCAGTTT 58.324 29.630 0.00 0.00 0.00 2.66
4528 7753 5.863397 TGTCTTGTTTTGAGAAAAGCTGTTG 59.137 36.000 0.00 0.00 0.00 3.33
4536 7761 3.766591 TGAGAAAAGCTGTTGGACCAAAA 59.233 39.130 8.94 1.88 0.00 2.44
4541 7767 2.301346 AGCTGTTGGACCAAAACTCTG 58.699 47.619 8.94 1.93 0.00 3.35
4542 7768 2.092429 AGCTGTTGGACCAAAACTCTGA 60.092 45.455 8.94 0.00 0.00 3.27
4543 7769 2.291741 GCTGTTGGACCAAAACTCTGAG 59.708 50.000 8.94 2.45 0.00 3.35
4544 7770 2.880890 CTGTTGGACCAAAACTCTGAGG 59.119 50.000 8.94 0.00 0.00 3.86
4545 7771 2.507886 TGTTGGACCAAAACTCTGAGGA 59.492 45.455 8.94 0.00 0.00 3.71
4547 7773 3.943671 TGGACCAAAACTCTGAGGAAA 57.056 42.857 9.85 0.00 0.00 3.13
4654 7883 3.557054 GCACCTACCAAATGACAGACTGA 60.557 47.826 10.08 0.00 0.00 3.41
4660 7889 2.486982 CCAAATGACAGACTGAAGCTGG 59.513 50.000 10.08 5.35 37.69 4.85
4677 7927 4.701765 AGCTGGCATATACTTTCACTGAG 58.298 43.478 0.00 0.00 0.00 3.35
4734 7984 4.712337 AGTGAACTAGGGTAGATCCAACAG 59.288 45.833 0.00 0.00 38.11 3.16
4819 8079 5.873179 AACATACTACAAAATGGTGACCG 57.127 39.130 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.001597 CAGAATACGTACTCCTCGCCC 60.002 57.143 0.00 0.00 0.00 6.13
110 131 8.887036 AAAAAGACAAGACAAGAAACAAAGTT 57.113 26.923 0.00 0.00 0.00 2.66
111 132 8.360390 AGAAAAAGACAAGACAAGAAACAAAGT 58.640 29.630 0.00 0.00 0.00 2.66
161 190 5.753921 ACTCCACGAAAGAGTTGTAAGAAAG 59.246 40.000 0.00 0.00 41.87 2.62
185 214 8.809478 GCGGTTTGACTTTTTAAAATTGTTCTA 58.191 29.630 0.55 0.00 0.00 2.10
187 216 6.902948 GGCGGTTTGACTTTTTAAAATTGTTC 59.097 34.615 0.55 0.00 0.00 3.18
190 219 6.418141 CAGGCGGTTTGACTTTTTAAAATTG 58.582 36.000 0.55 1.09 27.82 2.32
191 220 5.525745 CCAGGCGGTTTGACTTTTTAAAATT 59.474 36.000 0.55 0.00 27.82 1.82
192 221 5.053811 CCAGGCGGTTTGACTTTTTAAAAT 58.946 37.500 0.55 0.00 27.82 1.82
196 225 1.338655 GCCAGGCGGTTTGACTTTTTA 59.661 47.619 0.00 0.00 27.82 1.52
198 227 0.755327 AGCCAGGCGGTTTGACTTTT 60.755 50.000 5.55 0.00 27.82 2.27
199 228 1.152756 AGCCAGGCGGTTTGACTTT 60.153 52.632 5.55 0.00 27.82 2.66
200 229 1.898574 CAGCCAGGCGGTTTGACTT 60.899 57.895 5.55 0.00 27.82 3.01
201 230 2.281761 CAGCCAGGCGGTTTGACT 60.282 61.111 5.55 0.00 34.75 3.41
202 231 4.043200 GCAGCCAGGCGGTTTGAC 62.043 66.667 13.66 0.00 33.28 3.18
203 232 4.269523 AGCAGCCAGGCGGTTTGA 62.270 61.111 13.66 0.00 39.27 2.69
204 233 4.047059 CAGCAGCCAGGCGGTTTG 62.047 66.667 13.66 8.44 39.27 2.93
205 234 4.586235 ACAGCAGCCAGGCGGTTT 62.586 61.111 13.66 1.09 39.14 3.27
211 240 3.362797 CACAGCACAGCAGCCAGG 61.363 66.667 0.00 0.00 34.23 4.45
213 242 4.960866 CCCACAGCACAGCAGCCA 62.961 66.667 0.00 0.00 34.23 4.75
254 2399 3.062466 GGAAGGAAGCCAACCGCC 61.062 66.667 0.00 0.00 38.78 6.13
257 2402 1.606601 GTGGGGAAGGAAGCCAACC 60.607 63.158 0.00 0.00 0.00 3.77
298 2458 4.398673 TCTCTCACATCTCACATCTCACAG 59.601 45.833 0.00 0.00 0.00 3.66
305 2465 6.602410 TCTTTTCTCTCTCACATCTCACAT 57.398 37.500 0.00 0.00 0.00 3.21
306 2466 6.410942 TTCTTTTCTCTCTCACATCTCACA 57.589 37.500 0.00 0.00 0.00 3.58
307 2467 7.655328 TCTTTTCTTTTCTCTCTCACATCTCAC 59.345 37.037 0.00 0.00 0.00 3.51
308 2468 7.730084 TCTTTTCTTTTCTCTCTCACATCTCA 58.270 34.615 0.00 0.00 0.00 3.27
309 2469 8.600449 TTCTTTTCTTTTCTCTCTCACATCTC 57.400 34.615 0.00 0.00 0.00 2.75
310 2470 8.970859 TTTCTTTTCTTTTCTCTCTCACATCT 57.029 30.769 0.00 0.00 0.00 2.90
311 2471 9.050601 TCTTTCTTTTCTTTTCTCTCTCACATC 57.949 33.333 0.00 0.00 0.00 3.06
312 2472 8.970859 TCTTTCTTTTCTTTTCTCTCTCACAT 57.029 30.769 0.00 0.00 0.00 3.21
315 2475 9.061435 GGATTCTTTCTTTTCTTTTCTCTCTCA 57.939 33.333 0.00 0.00 0.00 3.27
338 2507 2.699938 GTGGGGATGGGGGTGGAT 60.700 66.667 0.00 0.00 0.00 3.41
399 2623 3.333898 GAAGGACGGACGGACGGAC 62.334 68.421 6.00 0.00 38.39 4.79
400 2624 3.058160 GAAGGACGGACGGACGGA 61.058 66.667 6.00 0.00 38.39 4.69
401 2625 4.125695 GGAAGGACGGACGGACGG 62.126 72.222 6.00 0.00 38.39 4.79
402 2626 2.539263 GAAGGAAGGACGGACGGACG 62.539 65.000 0.00 0.00 40.31 4.79
403 2627 1.214853 GAAGGAAGGACGGACGGAC 59.785 63.158 0.00 0.00 0.00 4.79
404 2628 1.980772 GGAAGGAAGGACGGACGGA 60.981 63.158 0.00 0.00 0.00 4.69
405 2629 1.542187 AAGGAAGGAAGGACGGACGG 61.542 60.000 0.00 0.00 0.00 4.79
406 2630 0.389948 CAAGGAAGGAAGGACGGACG 60.390 60.000 0.00 0.00 0.00 4.79
407 2631 0.685660 ACAAGGAAGGAAGGACGGAC 59.314 55.000 0.00 0.00 0.00 4.79
411 2635 0.685660 ACCGACAAGGAAGGAAGGAC 59.314 55.000 0.00 0.00 45.00 3.85
438 2662 3.087906 GAGGGAAGCGGGGGCTTA 61.088 66.667 0.70 0.00 0.00 3.09
446 2670 1.660917 GATCCTACCGAGGGAAGCG 59.339 63.158 0.00 0.00 43.94 4.68
447 2671 0.822532 TCGATCCTACCGAGGGAAGC 60.823 60.000 0.00 0.00 43.94 3.86
448 2672 1.813786 GATCGATCCTACCGAGGGAAG 59.186 57.143 14.76 0.00 43.94 3.46
449 2673 1.547223 GGATCGATCCTACCGAGGGAA 60.547 57.143 32.91 0.00 43.94 3.97
450 2674 0.037877 GGATCGATCCTACCGAGGGA 59.962 60.000 32.91 0.00 43.94 4.20
469 2699 1.768077 GAGATGGAGGTGGAGGGGG 60.768 68.421 0.00 0.00 0.00 5.40
470 2700 1.768077 GGAGATGGAGGTGGAGGGG 60.768 68.421 0.00 0.00 0.00 4.79
477 2721 1.936631 AGAGGAGAAGGAGATGGAGGT 59.063 52.381 0.00 0.00 0.00 3.85
483 2727 3.307506 CCACATGAGAGGAGAAGGAGAT 58.692 50.000 0.00 0.00 0.00 2.75
498 2742 0.109781 GCGCACAACCTAACCACATG 60.110 55.000 0.30 0.00 0.00 3.21
540 2815 6.410942 AAGGGATTCTTTCTTTTCTTGGTG 57.589 37.500 0.00 0.00 29.99 4.17
550 2825 4.355287 ACAAGGAAGGAAGGGATTCTTTCT 59.645 41.667 11.18 0.00 43.03 2.52
551 2826 4.667573 ACAAGGAAGGAAGGGATTCTTTC 58.332 43.478 4.73 4.73 36.62 2.62
555 2830 4.471747 AGAGTACAAGGAAGGAAGGGATTC 59.528 45.833 0.00 0.00 0.00 2.52
556 2831 4.439860 AGAGTACAAGGAAGGAAGGGATT 58.560 43.478 0.00 0.00 0.00 3.01
557 2832 4.081695 AGAGTACAAGGAAGGAAGGGAT 57.918 45.455 0.00 0.00 0.00 3.85
559 2834 4.354662 ACTAGAGTACAAGGAAGGAAGGG 58.645 47.826 0.00 0.00 0.00 3.95
617 2943 7.049754 CCATCCATCCGAATCAATCATACATA 58.950 38.462 0.00 0.00 0.00 2.29
618 2944 5.884232 CCATCCATCCGAATCAATCATACAT 59.116 40.000 0.00 0.00 0.00 2.29
621 2947 5.503634 ACCATCCATCCGAATCAATCATA 57.496 39.130 0.00 0.00 0.00 2.15
622 2948 4.377762 ACCATCCATCCGAATCAATCAT 57.622 40.909 0.00 0.00 0.00 2.45
638 2964 3.017048 TCATCCATCCACCAAACCATC 57.983 47.619 0.00 0.00 0.00 3.51
667 2993 5.220381 CAGTCAATGATGAATGCCTATTGC 58.780 41.667 0.00 0.00 43.73 3.56
676 3002 4.012374 AGAAACGGCAGTCAATGATGAAT 58.988 39.130 0.00 0.00 37.30 2.57
677 3003 3.411446 AGAAACGGCAGTCAATGATGAA 58.589 40.909 0.00 0.00 37.30 2.57
678 3004 3.057969 AGAAACGGCAGTCAATGATGA 57.942 42.857 0.00 0.00 0.00 2.92
679 3005 3.837213 AAGAAACGGCAGTCAATGATG 57.163 42.857 0.00 0.00 0.00 3.07
680 3006 4.156008 GGTAAAGAAACGGCAGTCAATGAT 59.844 41.667 0.00 0.00 0.00 2.45
681 3007 3.500680 GGTAAAGAAACGGCAGTCAATGA 59.499 43.478 0.00 0.00 0.00 2.57
683 3009 2.817844 GGGTAAAGAAACGGCAGTCAAT 59.182 45.455 0.00 0.00 0.00 2.57
687 3013 1.697982 AGAGGGTAAAGAAACGGCAGT 59.302 47.619 0.00 0.00 0.00 4.40
688 3014 2.474410 AGAGGGTAAAGAAACGGCAG 57.526 50.000 0.00 0.00 0.00 4.85
689 3015 4.563140 ATTAGAGGGTAAAGAAACGGCA 57.437 40.909 0.00 0.00 0.00 5.69
690 3016 6.990341 TTAATTAGAGGGTAAAGAAACGGC 57.010 37.500 0.00 0.00 0.00 5.68
691 3017 9.169592 TGATTTAATTAGAGGGTAAAGAAACGG 57.830 33.333 0.00 0.00 0.00 4.44
736 3688 3.427863 GCAGTGAAAGAAAGAAAGCATGC 59.572 43.478 10.51 10.51 0.00 4.06
737 3689 4.443394 GTGCAGTGAAAGAAAGAAAGCATG 59.557 41.667 0.00 0.00 0.00 4.06
741 3693 3.038710 GCGTGCAGTGAAAGAAAGAAAG 58.961 45.455 0.00 0.00 0.00 2.62
742 3694 2.223479 GGCGTGCAGTGAAAGAAAGAAA 60.223 45.455 0.00 0.00 0.00 2.52
743 3695 1.333619 GGCGTGCAGTGAAAGAAAGAA 59.666 47.619 0.00 0.00 0.00 2.52
744 3696 0.944386 GGCGTGCAGTGAAAGAAAGA 59.056 50.000 0.00 0.00 0.00 2.52
778 3730 1.000396 GGTGAATCAAGCCCTGCCT 60.000 57.895 0.00 0.00 0.00 4.75
837 3794 9.418839 ACTCTTATATTAGTTTACGGAGGAAGT 57.581 33.333 0.00 0.00 0.00 3.01
838 3795 9.680315 CACTCTTATATTAGTTTACGGAGGAAG 57.320 37.037 0.00 0.00 0.00 3.46
840 3797 8.757982 ACACTCTTATATTAGTTTACGGAGGA 57.242 34.615 0.00 0.00 0.00 3.71
841 3798 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
889 3846 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
890 3847 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
891 3848 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
892 3849 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
893 3850 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
901 3858 8.603304 ACAAACATACTCCCTCTGTAAACTAAT 58.397 33.333 0.00 0.00 0.00 1.73
902 3859 7.876068 CACAAACATACTCCCTCTGTAAACTAA 59.124 37.037 0.00 0.00 0.00 2.24
903 3860 7.015877 ACACAAACATACTCCCTCTGTAAACTA 59.984 37.037 0.00 0.00 0.00 2.24
904 3861 6.183361 ACACAAACATACTCCCTCTGTAAACT 60.183 38.462 0.00 0.00 0.00 2.66
905 3862 5.995897 ACACAAACATACTCCCTCTGTAAAC 59.004 40.000 0.00 0.00 0.00 2.01
906 3863 5.995282 CACACAAACATACTCCCTCTGTAAA 59.005 40.000 0.00 0.00 0.00 2.01
907 3864 5.305902 TCACACAAACATACTCCCTCTGTAA 59.694 40.000 0.00 0.00 0.00 2.41
908 3865 4.836175 TCACACAAACATACTCCCTCTGTA 59.164 41.667 0.00 0.00 0.00 2.74
909 3866 3.646162 TCACACAAACATACTCCCTCTGT 59.354 43.478 0.00 0.00 0.00 3.41
910 3867 4.271696 TCACACAAACATACTCCCTCTG 57.728 45.455 0.00 0.00 0.00 3.35
911 3868 4.836825 CATCACACAAACATACTCCCTCT 58.163 43.478 0.00 0.00 0.00 3.69
912 3869 3.375299 GCATCACACAAACATACTCCCTC 59.625 47.826 0.00 0.00 0.00 4.30
913 3870 3.347216 GCATCACACAAACATACTCCCT 58.653 45.455 0.00 0.00 0.00 4.20
914 3871 2.423538 GGCATCACACAAACATACTCCC 59.576 50.000 0.00 0.00 0.00 4.30
915 3872 2.095853 CGGCATCACACAAACATACTCC 59.904 50.000 0.00 0.00 0.00 3.85
916 3873 2.742053 ACGGCATCACACAAACATACTC 59.258 45.455 0.00 0.00 0.00 2.59
917 3874 2.742053 GACGGCATCACACAAACATACT 59.258 45.455 0.00 0.00 0.00 2.12
918 3875 2.473868 CGACGGCATCACACAAACATAC 60.474 50.000 0.00 0.00 0.00 2.39
926 3883 1.792949 GGATAATCGACGGCATCACAC 59.207 52.381 0.00 0.00 0.00 3.82
949 3906 1.737793 CGGGTTGAGCATAACAGAACC 59.262 52.381 0.00 0.00 32.22 3.62
950 3907 1.130561 GCGGGTTGAGCATAACAGAAC 59.869 52.381 5.62 0.00 32.22 3.01
963 3924 0.883833 ATTTGCAGAAGAGCGGGTTG 59.116 50.000 0.00 0.00 37.31 3.77
966 3927 1.401905 GGTTATTTGCAGAAGAGCGGG 59.598 52.381 0.00 0.00 37.31 6.13
1030 3991 3.365265 GGCGCCTTGGTCCACTTG 61.365 66.667 22.15 0.00 0.00 3.16
1117 4081 2.438075 GCCCTCTGCTGCTCCTTG 60.438 66.667 0.00 0.00 36.87 3.61
1257 4224 0.673644 CCACGCTGGTACTTTCCTGG 60.674 60.000 0.00 0.00 31.35 4.45
1266 4233 2.286826 AGCATCTTCCACGCTGGTA 58.713 52.632 4.33 0.00 39.03 3.25
1284 4251 0.250295 CTCCCACGTTCTTGAAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
1299 4266 1.558756 CCATCATCATAGCCTCCTCCC 59.441 57.143 0.00 0.00 0.00 4.30
1302 4269 2.264455 GACCCATCATCATAGCCTCCT 58.736 52.381 0.00 0.00 0.00 3.69
1311 4278 2.115510 CGTCTCGGACCCATCATCA 58.884 57.895 0.00 0.00 0.00 3.07
1344 4311 1.984570 CGACAGGCTCTTCCCCTCA 60.985 63.158 0.00 0.00 34.51 3.86
1408 4375 2.551504 GGACAACGTAACCATCTTGGGT 60.552 50.000 0.00 0.00 43.37 4.51
1447 4423 3.119352 GCATCAACTTTGTCCTGGGAATC 60.119 47.826 0.00 0.00 0.00 2.52
1448 4424 2.827921 GCATCAACTTTGTCCTGGGAAT 59.172 45.455 0.00 0.00 0.00 3.01
1449 4425 2.238521 GCATCAACTTTGTCCTGGGAA 58.761 47.619 0.00 0.00 0.00 3.97
1461 4437 1.220206 CAGAGGAGGCGCATCAACT 59.780 57.895 24.79 18.11 0.00 3.16
1462 4438 1.817099 CCAGAGGAGGCGCATCAAC 60.817 63.158 24.79 16.12 0.00 3.18
1463 4439 1.989508 TCCAGAGGAGGCGCATCAA 60.990 57.895 24.79 0.00 0.00 2.57
1602 4578 4.954970 AGGGCAGCCACAACCACG 62.955 66.667 15.19 0.00 0.00 4.94
1608 4584 4.601794 CCAACCAGGGCAGCCACA 62.602 66.667 15.19 0.00 0.00 4.17
1689 4665 3.118629 CCATGTGTACATACCTGACTGCT 60.119 47.826 0.00 0.00 34.26 4.24
1710 4686 7.766278 TCATAGTTGAAAAGAGACAATAGCTCC 59.234 37.037 0.00 0.00 32.82 4.70
1768 4759 8.917088 AGCTACACTGCATATTATTTCCAAAAT 58.083 29.630 0.00 0.00 34.99 1.82
1789 4780 5.232414 CACTGCTAAATACGGAAAGAGCTAC 59.768 44.000 0.00 0.00 0.00 3.58
1829 4822 6.381481 ACATGCACATTACTGACCATATTG 57.619 37.500 0.00 0.00 0.00 1.90
1849 4846 3.304928 GCAACAGAGCAAGCAACTAACAT 60.305 43.478 0.00 0.00 0.00 2.71
1876 4883 4.835615 AGAAACACTAAGCTGAGGAGAGAA 59.164 41.667 2.29 0.00 0.00 2.87
1958 4987 6.017400 AGTTTTCAGGCACATAATTGAGTG 57.983 37.500 7.50 7.50 38.74 3.51
2106 5135 7.844009 TCAATAGTTACACCCCACTAACTTAG 58.156 38.462 0.00 0.00 35.34 2.18
2453 5502 9.787435 AGTGACAATACTTAAAATGACTGGTTA 57.213 29.630 0.00 0.00 0.00 2.85
2480 5529 4.589216 AAGCAACAGTAACATGCACATT 57.411 36.364 0.00 0.00 42.45 2.71
2526 5679 4.347000 AGAAAGAGTACCCTACTGCACAAA 59.653 41.667 0.00 0.00 39.59 2.83
2537 5690 5.507482 GCAAGGAAAAACAGAAAGAGTACCC 60.507 44.000 0.00 0.00 0.00 3.69
2544 5697 5.254339 ACTGAGCAAGGAAAAACAGAAAG 57.746 39.130 0.00 0.00 0.00 2.62
2556 5709 2.237143 TCAGGTCCATTACTGAGCAAGG 59.763 50.000 0.00 0.00 38.71 3.61
2580 5733 4.015872 TGTAACAGGGAGTCCAATCAAC 57.984 45.455 12.30 3.98 34.83 3.18
2581 5734 4.536090 AGATGTAACAGGGAGTCCAATCAA 59.464 41.667 12.30 0.00 34.83 2.57
2624 5777 0.822532 GGAGATGCTGGGCCATGAAG 60.823 60.000 6.72 0.00 0.00 3.02
2625 5778 1.228228 GGAGATGCTGGGCCATGAA 59.772 57.895 6.72 0.00 0.00 2.57
2675 5828 6.094048 ACATGCCACACAACATCTCTATAAAC 59.906 38.462 0.00 0.00 0.00 2.01
2860 6048 5.066375 GCTGTCTGGTATGCAATATTGAACA 59.934 40.000 19.73 8.80 0.00 3.18
2876 6064 4.380531 ACGGATGTATATTTGCTGTCTGG 58.619 43.478 0.00 0.00 0.00 3.86
2888 6076 6.982141 CCTACTTTGCTGTAAACGGATGTATA 59.018 38.462 0.00 0.00 0.00 1.47
2891 6079 4.000988 CCTACTTTGCTGTAAACGGATGT 58.999 43.478 0.00 0.00 0.00 3.06
2923 6111 5.361427 TCGTACTGAACCAAAGTGAAATCA 58.639 37.500 0.00 0.00 0.00 2.57
2944 6132 3.369385 ACAGTCACTGTTTCGTAGTTCG 58.631 45.455 3.98 0.00 42.59 3.95
3091 6279 8.774183 TCCCACTTTATGTACCATATAAACTGT 58.226 33.333 0.00 0.00 0.00 3.55
3092 6280 9.793259 ATCCCACTTTATGTACCATATAAACTG 57.207 33.333 0.00 0.00 0.00 3.16
3230 6418 3.706594 TGGGTGTCCTAATGTTGCAAAAA 59.293 39.130 0.00 0.00 0.00 1.94
3287 6476 9.321562 AGTATTCCACTGTAAATATAAACGTGG 57.678 33.333 16.52 16.52 39.48 4.94
3328 6517 8.848474 ATTTACTGACAGCATACAAGTTAAGT 57.152 30.769 1.25 0.00 0.00 2.24
3331 6520 7.663905 ACCAATTTACTGACAGCATACAAGTTA 59.336 33.333 1.25 0.00 0.00 2.24
3343 6532 7.581213 AATGACAAGAACCAATTTACTGACA 57.419 32.000 0.00 0.00 0.00 3.58
3372 6562 8.731275 TTAACATTGGTACCATATGAGAACAG 57.269 34.615 28.70 10.44 0.00 3.16
3377 6567 9.559732 TTCTCATTAACATTGGTACCATATGAG 57.440 33.333 28.70 26.20 38.38 2.90
3378 6568 9.559732 CTTCTCATTAACATTGGTACCATATGA 57.440 33.333 28.70 21.36 0.00 2.15
3384 6574 6.657541 TGGTTCTTCTCATTAACATTGGTACC 59.342 38.462 4.43 4.43 0.00 3.34
3385 6575 7.681939 TGGTTCTTCTCATTAACATTGGTAC 57.318 36.000 0.00 0.00 0.00 3.34
3387 6577 7.781324 ATTGGTTCTTCTCATTAACATTGGT 57.219 32.000 0.00 0.00 0.00 3.67
3392 6582 9.567776 TCAGTAAATTGGTTCTTCTCATTAACA 57.432 29.630 0.00 0.00 0.00 2.41
3393 6583 9.827411 GTCAGTAAATTGGTTCTTCTCATTAAC 57.173 33.333 0.00 0.00 0.00 2.01
3394 6584 9.010029 GGTCAGTAAATTGGTTCTTCTCATTAA 57.990 33.333 0.00 0.00 0.00 1.40
3396 6586 6.149474 CGGTCAGTAAATTGGTTCTTCTCATT 59.851 38.462 0.00 0.00 0.00 2.57
3399 6589 4.142881 GCGGTCAGTAAATTGGTTCTTCTC 60.143 45.833 0.00 0.00 0.00 2.87
3403 6593 3.134574 TGCGGTCAGTAAATTGGTTCT 57.865 42.857 0.00 0.00 0.00 3.01
3404 6594 4.393680 TGTATGCGGTCAGTAAATTGGTTC 59.606 41.667 0.00 0.00 0.00 3.62
3405 6595 4.328536 TGTATGCGGTCAGTAAATTGGTT 58.671 39.130 0.00 0.00 0.00 3.67
3406 6596 3.945346 TGTATGCGGTCAGTAAATTGGT 58.055 40.909 0.00 0.00 0.00 3.67
3407 6597 4.394920 ACTTGTATGCGGTCAGTAAATTGG 59.605 41.667 0.00 0.00 0.00 3.16
3408 6598 5.545658 ACTTGTATGCGGTCAGTAAATTG 57.454 39.130 0.00 0.00 0.00 2.32
3409 6599 7.604927 TCTTAACTTGTATGCGGTCAGTAAATT 59.395 33.333 0.00 0.00 0.00 1.82
3410 6600 7.101054 TCTTAACTTGTATGCGGTCAGTAAAT 58.899 34.615 0.00 0.00 0.00 1.40
3411 6601 6.457355 TCTTAACTTGTATGCGGTCAGTAAA 58.543 36.000 0.00 0.00 0.00 2.01
3412 6602 6.028146 TCTTAACTTGTATGCGGTCAGTAA 57.972 37.500 0.00 0.00 0.00 2.24
3413 6603 5.648178 TCTTAACTTGTATGCGGTCAGTA 57.352 39.130 0.00 0.00 0.00 2.74
3414 6604 4.530710 TCTTAACTTGTATGCGGTCAGT 57.469 40.909 0.00 0.00 0.00 3.41
3415 6605 5.856126 TTTCTTAACTTGTATGCGGTCAG 57.144 39.130 0.00 0.00 0.00 3.51
3416 6606 6.428465 TCATTTTCTTAACTTGTATGCGGTCA 59.572 34.615 0.00 0.00 0.00 4.02
3417 6607 6.837992 TCATTTTCTTAACTTGTATGCGGTC 58.162 36.000 0.00 0.00 0.00 4.79
3418 6608 6.811253 TCATTTTCTTAACTTGTATGCGGT 57.189 33.333 0.00 0.00 0.00 5.68
3419 6609 8.612619 AGTATCATTTTCTTAACTTGTATGCGG 58.387 33.333 0.00 0.00 0.00 5.69
3433 6623 9.530633 GTGGAATACTTCGTAGTATCATTTTCT 57.469 33.333 14.19 0.00 44.85 2.52
3434 6624 9.530633 AGTGGAATACTTCGTAGTATCATTTTC 57.469 33.333 14.19 8.93 44.85 2.29
3435 6625 9.314321 CAGTGGAATACTTCGTAGTATCATTTT 57.686 33.333 14.19 0.56 44.85 1.82
3436 6626 8.475639 ACAGTGGAATACTTCGTAGTATCATTT 58.524 33.333 14.19 0.91 44.85 2.32
3437 6627 8.008513 ACAGTGGAATACTTCGTAGTATCATT 57.991 34.615 14.19 2.20 44.85 2.57
3438 6628 7.584122 ACAGTGGAATACTTCGTAGTATCAT 57.416 36.000 14.19 1.13 44.85 2.45
3439 6629 8.510243 TTACAGTGGAATACTTCGTAGTATCA 57.490 34.615 14.19 7.21 44.85 2.15
3440 6630 9.962783 ATTTACAGTGGAATACTTCGTAGTATC 57.037 33.333 14.19 8.51 44.85 2.24
3457 6647 5.163804 TGCTGCCACGTTTATATTTACAGTG 60.164 40.000 0.00 0.00 0.00 3.66
3458 6648 4.938832 TGCTGCCACGTTTATATTTACAGT 59.061 37.500 0.00 0.00 0.00 3.55
3459 6649 5.478233 TGCTGCCACGTTTATATTTACAG 57.522 39.130 0.00 0.00 0.00 2.74
3460 6650 5.881777 TTGCTGCCACGTTTATATTTACA 57.118 34.783 0.00 0.00 0.00 2.41
3461 6651 6.087522 TGTTTGCTGCCACGTTTATATTTAC 58.912 36.000 0.00 0.00 0.00 2.01
3462 6652 6.255596 TGTTTGCTGCCACGTTTATATTTA 57.744 33.333 0.00 0.00 0.00 1.40
3463 6653 5.127693 TGTTTGCTGCCACGTTTATATTT 57.872 34.783 0.00 0.00 0.00 1.40
3464 6654 4.775058 TGTTTGCTGCCACGTTTATATT 57.225 36.364 0.00 0.00 0.00 1.28
3465 6655 4.157656 ACATGTTTGCTGCCACGTTTATAT 59.842 37.500 0.00 0.00 0.00 0.86
3466 6656 3.504134 ACATGTTTGCTGCCACGTTTATA 59.496 39.130 0.00 0.00 0.00 0.98
3467 6657 2.295909 ACATGTTTGCTGCCACGTTTAT 59.704 40.909 0.00 0.00 0.00 1.40
3468 6658 1.678627 ACATGTTTGCTGCCACGTTTA 59.321 42.857 0.00 0.00 0.00 2.01
3469 6659 0.459489 ACATGTTTGCTGCCACGTTT 59.541 45.000 0.00 0.00 0.00 3.60
3470 6660 0.459489 AACATGTTTGCTGCCACGTT 59.541 45.000 4.92 0.00 0.00 3.99
3471 6661 0.248990 CAACATGTTTGCTGCCACGT 60.249 50.000 8.77 0.00 0.00 4.49
3472 6662 0.030504 TCAACATGTTTGCTGCCACG 59.969 50.000 8.77 0.00 0.00 4.94
3473 6663 1.067516 ACTCAACATGTTTGCTGCCAC 59.932 47.619 8.77 0.00 0.00 5.01
3474 6664 1.337703 GACTCAACATGTTTGCTGCCA 59.662 47.619 8.77 0.00 0.00 4.92
3475 6665 1.337703 TGACTCAACATGTTTGCTGCC 59.662 47.619 8.77 0.00 0.00 4.85
3476 6666 2.033801 ACTGACTCAACATGTTTGCTGC 59.966 45.455 8.77 0.00 0.00 5.25
3477 6667 3.976793 ACTGACTCAACATGTTTGCTG 57.023 42.857 8.77 0.00 0.00 4.41
3478 6668 7.928307 ATATTACTGACTCAACATGTTTGCT 57.072 32.000 8.77 0.00 0.00 3.91
3479 6669 8.122952 GGTATATTACTGACTCAACATGTTTGC 58.877 37.037 8.77 0.00 0.00 3.68
3480 6670 9.383519 AGGTATATTACTGACTCAACATGTTTG 57.616 33.333 8.77 7.55 0.00 2.93
3481 6671 9.959721 AAGGTATATTACTGACTCAACATGTTT 57.040 29.630 8.77 0.00 0.00 2.83
3482 6672 9.601217 GAAGGTATATTACTGACTCAACATGTT 57.399 33.333 4.92 4.92 0.00 2.71
3483 6673 8.982723 AGAAGGTATATTACTGACTCAACATGT 58.017 33.333 0.00 0.00 0.00 3.21
3484 6674 9.823647 AAGAAGGTATATTACTGACTCAACATG 57.176 33.333 0.00 0.00 0.00 3.21
3485 6675 9.823647 CAAGAAGGTATATTACTGACTCAACAT 57.176 33.333 0.00 0.00 0.00 2.71
3486 6676 7.764443 GCAAGAAGGTATATTACTGACTCAACA 59.236 37.037 0.00 0.00 0.00 3.33
3487 6677 7.764443 TGCAAGAAGGTATATTACTGACTCAAC 59.236 37.037 0.00 0.00 0.00 3.18
3488 6678 7.847096 TGCAAGAAGGTATATTACTGACTCAA 58.153 34.615 0.00 0.00 0.00 3.02
3489 6679 7.418337 TGCAAGAAGGTATATTACTGACTCA 57.582 36.000 0.00 0.00 0.00 3.41
3490 6680 8.894768 AATGCAAGAAGGTATATTACTGACTC 57.105 34.615 0.00 0.00 0.00 3.36
3501 6691 9.777297 AAACAAAATGTTAATGCAAGAAGGTAT 57.223 25.926 0.00 0.00 40.14 2.73
3502 6692 9.255304 GAAACAAAATGTTAATGCAAGAAGGTA 57.745 29.630 0.00 0.00 40.14 3.08
3552 6743 5.555017 ACACGTACTACTAGGAAGACTTGA 58.445 41.667 0.00 0.00 0.00 3.02
3562 6753 9.831737 AACTGTATGTTTAACACGTACTACTAG 57.168 33.333 0.00 2.82 45.14 2.57
3563 6754 9.825972 GAACTGTATGTTTAACACGTACTACTA 57.174 33.333 0.00 0.00 45.14 1.82
3564 6755 8.352201 TGAACTGTATGTTTAACACGTACTACT 58.648 33.333 0.00 0.00 45.14 2.57
3567 6758 6.421801 GGTGAACTGTATGTTTAACACGTACT 59.578 38.462 0.00 0.00 45.14 2.73
3569 6760 5.695816 GGGTGAACTGTATGTTTAACACGTA 59.304 40.000 0.00 0.00 39.30 3.57
3570 6761 4.512571 GGGTGAACTGTATGTTTAACACGT 59.487 41.667 0.00 0.00 39.30 4.49
3571 6762 4.512198 TGGGTGAACTGTATGTTTAACACG 59.488 41.667 0.00 0.00 39.30 4.49
3572 6763 5.048991 CCTGGGTGAACTGTATGTTTAACAC 60.049 44.000 0.00 0.00 39.30 3.32
3573 6764 5.067273 CCTGGGTGAACTGTATGTTTAACA 58.933 41.667 0.00 0.00 39.30 2.41
3574 6765 5.067954 ACCTGGGTGAACTGTATGTTTAAC 58.932 41.667 0.00 0.00 39.30 2.01
3575 6766 5.310451 GACCTGGGTGAACTGTATGTTTAA 58.690 41.667 0.00 0.00 39.30 1.52
3576 6767 4.263156 GGACCTGGGTGAACTGTATGTTTA 60.263 45.833 0.00 0.00 39.30 2.01
3607 6798 4.897076 TCTGACCAGTTAGGACACTGTTAA 59.103 41.667 0.44 0.00 42.45 2.01
3614 6805 6.497259 AGAAAATAGTCTGACCAGTTAGGACA 59.503 38.462 3.76 0.00 41.22 4.02
3739 6940 5.582550 GTCATCAAGACGATATCAGTGTGA 58.417 41.667 3.12 7.92 37.53 3.58
3771 6972 9.598517 GGACATCAGGAATTATCATCTCTAATC 57.401 37.037 0.00 0.00 0.00 1.75
3804 7005 8.550376 GCAACAAAAACATAACAATTCACAGAT 58.450 29.630 0.00 0.00 0.00 2.90
3814 7015 6.201226 TCAGTCAGCAACAAAAACATAACA 57.799 33.333 0.00 0.00 0.00 2.41
3866 7069 1.616327 CCACCAGTCCAGGGGATCA 60.616 63.158 0.00 0.00 32.15 2.92
3867 7070 2.378634 CCCACCAGTCCAGGGGATC 61.379 68.421 0.00 0.00 43.57 3.36
3905 7113 6.558771 AGACTCATCAGAGATTGTATCGAG 57.441 41.667 0.00 0.00 44.98 4.04
4061 7272 5.458891 CAAGAAGAAACTTTGGCATCTCAG 58.541 41.667 0.00 0.00 0.00 3.35
4130 7341 1.410517 TGCAAAGGTCCGATGCAAAAA 59.589 42.857 18.70 0.16 46.23 1.94
4131 7342 1.035923 TGCAAAGGTCCGATGCAAAA 58.964 45.000 18.70 0.47 46.23 2.44
4132 7343 2.725811 TGCAAAGGTCCGATGCAAA 58.274 47.368 18.70 1.09 46.23 3.68
4133 7344 4.490696 TGCAAAGGTCCGATGCAA 57.509 50.000 18.70 6.20 46.23 4.08
4134 7345 1.073025 AGTGCAAAGGTCCGATGCA 59.927 52.632 17.51 17.51 46.97 3.96
4135 7346 1.237285 ACAGTGCAAAGGTCCGATGC 61.237 55.000 13.29 13.29 40.45 3.91
4136 7347 1.238439 AACAGTGCAAAGGTCCGATG 58.762 50.000 0.00 0.00 0.00 3.84
4137 7348 1.981256 AAACAGTGCAAAGGTCCGAT 58.019 45.000 0.00 0.00 0.00 4.18
4138 7349 2.623878 TAAACAGTGCAAAGGTCCGA 57.376 45.000 0.00 0.00 0.00 4.55
4139 7350 3.915437 ATTAAACAGTGCAAAGGTCCG 57.085 42.857 0.00 0.00 0.00 4.79
4140 7351 4.453136 TCGTATTAAACAGTGCAAAGGTCC 59.547 41.667 0.00 0.00 0.00 4.46
4141 7352 5.600908 TCGTATTAAACAGTGCAAAGGTC 57.399 39.130 0.00 0.00 0.00 3.85
4142 7353 5.559417 CGTTCGTATTAAACAGTGCAAAGGT 60.559 40.000 0.00 0.00 0.00 3.50
4143 7354 4.843984 CGTTCGTATTAAACAGTGCAAAGG 59.156 41.667 0.00 0.00 0.00 3.11
4144 7355 4.843984 CCGTTCGTATTAAACAGTGCAAAG 59.156 41.667 0.00 0.00 0.00 2.77
4145 7356 4.774586 CCGTTCGTATTAAACAGTGCAAA 58.225 39.130 0.00 0.00 0.00 3.68
4146 7357 3.364167 GCCGTTCGTATTAAACAGTGCAA 60.364 43.478 0.00 0.00 0.00 4.08
4147 7358 2.158058 GCCGTTCGTATTAAACAGTGCA 59.842 45.455 0.00 0.00 0.00 4.57
4148 7359 2.765918 GCCGTTCGTATTAAACAGTGC 58.234 47.619 0.00 0.00 0.00 4.40
4149 7360 2.781973 GCGCCGTTCGTATTAAACAGTG 60.782 50.000 0.00 0.00 41.07 3.66
4150 7361 1.391144 GCGCCGTTCGTATTAAACAGT 59.609 47.619 0.00 0.00 41.07 3.55
4151 7362 1.588082 CGCGCCGTTCGTATTAAACAG 60.588 52.381 0.00 0.00 41.07 3.16
4152 7363 0.366196 CGCGCCGTTCGTATTAAACA 59.634 50.000 0.00 0.00 41.07 2.83
4153 7364 0.916320 GCGCGCCGTTCGTATTAAAC 60.916 55.000 23.24 0.00 41.07 2.01
4154 7365 1.344498 GCGCGCCGTTCGTATTAAA 59.656 52.632 23.24 0.00 41.07 1.52
4155 7366 2.515729 GGCGCGCCGTTCGTATTAA 61.516 57.895 37.24 0.00 41.07 1.40
4156 7367 2.955914 GGCGCGCCGTTCGTATTA 60.956 61.111 37.24 0.00 41.07 0.98
4193 7404 5.046529 TCCAACAACCATTCGTCAAAAATG 58.953 37.500 0.00 0.00 34.55 2.32
4194 7405 5.269505 TCCAACAACCATTCGTCAAAAAT 57.730 34.783 0.00 0.00 0.00 1.82
4195 7406 4.720649 TCCAACAACCATTCGTCAAAAA 57.279 36.364 0.00 0.00 0.00 1.94
4209 7423 2.222007 GCAGTTGCACATTCCAACAA 57.778 45.000 6.98 0.00 43.74 2.83
4251 7465 0.248054 CAAGCACGACAACAAACGCT 60.248 50.000 0.00 0.00 0.00 5.07
4253 7467 1.326245 TCTCAAGCACGACAACAAACG 59.674 47.619 0.00 0.00 0.00 3.60
4262 7476 3.686241 CCAGAATTCATTCTCAAGCACGA 59.314 43.478 8.44 0.00 44.84 4.35
4319 7536 7.326063 GGATAAATTCTGAACGACCAAAAACAG 59.674 37.037 0.00 0.00 0.00 3.16
4348 7565 8.477984 AGTGAACAAGTACTTAACAACGTTTA 57.522 30.769 8.04 1.51 0.00 2.01
4351 7568 6.369615 ACAAGTGAACAAGTACTTAACAACGT 59.630 34.615 8.04 0.00 35.50 3.99
4352 7569 6.768078 ACAAGTGAACAAGTACTTAACAACG 58.232 36.000 8.04 0.00 35.50 4.10
4353 7570 7.007995 GCAACAAGTGAACAAGTACTTAACAAC 59.992 37.037 8.04 5.31 35.50 3.32
4354 7571 7.024768 GCAACAAGTGAACAAGTACTTAACAA 58.975 34.615 8.04 0.00 35.50 2.83
4355 7572 6.373216 AGCAACAAGTGAACAAGTACTTAACA 59.627 34.615 8.04 6.17 35.50 2.41
4356 7573 6.782150 AGCAACAAGTGAACAAGTACTTAAC 58.218 36.000 8.04 4.97 35.50 2.01
4358 7575 8.671384 ATTAGCAACAAGTGAACAAGTACTTA 57.329 30.769 8.04 0.00 35.50 2.24
4359 7576 6.995511 TTAGCAACAAGTGAACAAGTACTT 57.004 33.333 1.12 1.12 37.61 2.24
4360 7577 7.282224 TGAATTAGCAACAAGTGAACAAGTACT 59.718 33.333 0.00 0.00 0.00 2.73
4361 7578 7.414436 TGAATTAGCAACAAGTGAACAAGTAC 58.586 34.615 0.00 0.00 0.00 2.73
4384 7609 4.336153 AGATGCGTGCAATGTATGAAATGA 59.664 37.500 0.00 0.00 0.00 2.57
4453 7678 7.712205 ACTGATTTTCTTTGGATTTTTGGTGAG 59.288 33.333 0.00 0.00 0.00 3.51
4497 7722 8.067189 GCTTTTCTCAAAACAAGACAAACAAAA 58.933 29.630 0.00 0.00 0.00 2.44
4522 7747 2.291741 CTCAGAGTTTTGGTCCAACAGC 59.708 50.000 2.98 0.00 0.00 4.40
4528 7753 4.398319 TGATTTCCTCAGAGTTTTGGTCC 58.602 43.478 0.00 0.00 0.00 4.46
4635 7864 3.686726 GCTTCAGTCTGTCATTTGGTAGG 59.313 47.826 0.00 0.00 0.00 3.18
4654 7883 5.102953 TCAGTGAAAGTATATGCCAGCTT 57.897 39.130 0.00 0.00 0.00 3.74
4677 7927 4.370917 ACTGGCATTGTTTGAATGTTCAC 58.629 39.130 0.00 0.00 36.83 3.18
4772 8032 8.506168 TTGTTGGAATGGTCTCAAGTATATTC 57.494 34.615 0.00 0.00 0.00 1.75
4787 8047 8.924691 CCATTTTGTAGTATGTTTGTTGGAATG 58.075 33.333 0.00 0.00 0.00 2.67
4819 8079 8.795786 TGTATAAAGTTGTGAATTTTGCAGTC 57.204 30.769 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.