Multiple sequence alignment - TraesCS1D01G452800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G452800 chr1D 100.000 3602 0 0 1 3602 494052876 494056477 0.000000e+00 6652.0
1 TraesCS1D01G452800 chr1D 78.846 364 61 13 3111 3463 218771846 218771488 7.780000e-57 231.0
2 TraesCS1D01G452800 chr1D 75.083 606 90 38 1 552 376626878 376626280 3.620000e-55 226.0
3 TraesCS1D01G452800 chr1B 95.071 2333 55 16 728 3015 687334584 687336901 0.000000e+00 3616.0
4 TraesCS1D01G452800 chr1B 94.276 594 16 6 1 586 687318744 687319327 0.000000e+00 893.0
5 TraesCS1D01G452800 chr1B 81.337 359 52 10 3109 3455 455454000 455454355 9.850000e-71 278.0
6 TraesCS1D01G452800 chr1B 78.356 365 63 13 3111 3463 312705568 312705208 4.680000e-54 222.0
7 TraesCS1D01G452800 chr1B 88.776 98 6 5 455 550 136012798 136012704 8.170000e-22 115.0
8 TraesCS1D01G452800 chr1B 90.805 87 5 3 455 538 518189670 518189756 2.940000e-21 113.0
9 TraesCS1D01G452800 chr1A 90.494 2367 113 36 729 3015 592660280 592657946 0.000000e+00 3022.0
10 TraesCS1D01G452800 chr1A 89.567 508 34 10 3105 3602 592657909 592657411 8.490000e-176 627.0
11 TraesCS1D01G452800 chr1A 75.758 396 49 31 195 552 476914341 476913955 4.820000e-34 156.0
12 TraesCS1D01G452800 chr1A 89.773 88 7 2 455 540 485366475 485366562 1.060000e-20 111.0
13 TraesCS1D01G452800 chr6B 81.351 370 50 11 3105 3460 471682491 471682127 2.120000e-72 283.0
14 TraesCS1D01G452800 chr6B 79.839 372 59 11 3105 3464 228231492 228231125 1.280000e-64 257.0
15 TraesCS1D01G452800 chr2B 78.661 478 63 25 3105 3548 678650677 678650205 7.610000e-72 281.0
16 TraesCS1D01G452800 chr2B 78.621 145 22 7 314 452 662791505 662791646 1.780000e-13 87.9
17 TraesCS1D01G452800 chr6D 85.185 270 31 7 3111 3376 361372279 361372543 5.930000e-68 268.0
18 TraesCS1D01G452800 chr2A 84.000 275 40 4 3106 3379 747004166 747003895 9.920000e-66 261.0
19 TraesCS1D01G452800 chr5A 81.757 296 49 5 3105 3398 678590233 678589941 3.590000e-60 243.0
20 TraesCS1D01G452800 chr3D 85.600 125 17 1 2892 3015 1490483 1490359 2.920000e-26 130.0
21 TraesCS1D01G452800 chr3D 82.524 103 14 3 2905 3006 308825998 308826097 1.780000e-13 87.9
22 TraesCS1D01G452800 chr3B 85.600 125 17 1 2892 3015 3607501 3607377 2.920000e-26 130.0
23 TraesCS1D01G452800 chr3B 87.069 116 14 1 2892 3006 5229118 5229233 2.920000e-26 130.0
24 TraesCS1D01G452800 chr4B 90.816 98 6 3 455 550 406853644 406853548 1.050000e-25 128.0
25 TraesCS1D01G452800 chr4B 94.340 53 2 1 3477 3528 121193855 121193803 2.980000e-11 80.5
26 TraesCS1D01G452800 chr2D 85.246 122 17 1 2892 3012 413028610 413028731 1.360000e-24 124.0
27 TraesCS1D01G452800 chr7D 83.200 125 20 1 2892 3015 42633288 42633164 2.940000e-21 113.0
28 TraesCS1D01G452800 chr7D 87.755 98 8 4 458 552 384403249 384403153 1.060000e-20 111.0
29 TraesCS1D01G452800 chr7D 82.203 118 20 1 2892 3008 382382757 382382874 2.290000e-17 100.0
30 TraesCS1D01G452800 chr5D 87.129 101 10 3 455 552 281510347 281510447 1.060000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G452800 chr1D 494052876 494056477 3601 False 6652.0 6652 100.0000 1 3602 1 chr1D.!!$F1 3601
1 TraesCS1D01G452800 chr1D 376626280 376626878 598 True 226.0 226 75.0830 1 552 1 chr1D.!!$R2 551
2 TraesCS1D01G452800 chr1B 687334584 687336901 2317 False 3616.0 3616 95.0710 728 3015 1 chr1B.!!$F4 2287
3 TraesCS1D01G452800 chr1B 687318744 687319327 583 False 893.0 893 94.2760 1 586 1 chr1B.!!$F3 585
4 TraesCS1D01G452800 chr1A 592657411 592660280 2869 True 1824.5 3022 90.0305 729 3602 2 chr1A.!!$R2 2873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 306 0.608640 ACCGTGGGAGTGTGAGAATC 59.391 55.000 0.0 0.0 0.00 2.52 F
609 673 0.746063 TTCGTACAACACCACGACCT 59.254 50.000 0.0 0.0 46.01 3.85 F
620 684 0.804989 CCACGACCTTTTCTGATGGC 59.195 55.000 0.0 0.0 0.00 4.40 F
623 687 1.347707 ACGACCTTTTCTGATGGCTGA 59.652 47.619 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2331 0.107459 CAGCTTTGGGTCTAGGAGGC 60.107 60.000 0.00 0.0 0.0 4.70 R
2313 2434 0.550914 TCAACACCAGCTCCACCTTT 59.449 50.000 0.00 0.0 0.0 3.11 R
2317 2438 0.962356 CCCATCAACACCAGCTCCAC 60.962 60.000 0.00 0.0 0.0 4.02 R
2731 2898 1.374758 GTTCCGGACTCTGCACCAG 60.375 63.158 1.83 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 139 4.681744 TGGAAATTCTGAACAAGTTGCAC 58.318 39.130 1.81 0.00 28.38 4.57
157 161 1.228154 GACAAAGGGCCAACTCGGT 60.228 57.895 6.18 0.00 36.97 4.69
190 212 4.471157 TTTAGGTTTTTAGGCAACGACG 57.529 40.909 0.00 0.00 46.39 5.12
204 226 2.929398 CAACGACGATGTCATGGATGAA 59.071 45.455 0.00 0.00 38.75 2.57
280 306 0.608640 ACCGTGGGAGTGTGAGAATC 59.391 55.000 0.00 0.00 0.00 2.52
283 309 1.273606 CGTGGGAGTGTGAGAATCTGT 59.726 52.381 0.00 0.00 34.92 3.41
285 311 3.673594 CGTGGGAGTGTGAGAATCTGTAC 60.674 52.174 0.00 0.00 34.92 2.90
344 370 6.318648 GCAGTGAATCCATTATCACAACCTTA 59.681 38.462 8.43 0.00 46.55 2.69
392 425 5.344743 TCTATGGACTCAATGTCTTGGAC 57.655 43.478 0.00 0.00 44.74 4.02
542 606 2.162681 CAAAACCATCAGGGAGTGGAC 58.837 52.381 0.00 0.00 41.15 4.02
563 627 3.134458 CGTGCTTTCACTCTTCTTCCTT 58.866 45.455 0.00 0.00 40.99 3.36
577 641 6.826668 TCTTCTTCCTTGACTTGACAACATA 58.173 36.000 0.00 0.00 0.00 2.29
589 653 5.817988 CTTGACAACATATCAAGGCTGATG 58.182 41.667 6.81 4.23 46.21 3.07
590 654 4.847198 TGACAACATATCAAGGCTGATGT 58.153 39.130 8.95 4.76 42.48 3.06
591 655 5.255687 TGACAACATATCAAGGCTGATGTT 58.744 37.500 10.03 10.03 42.48 2.71
592 656 5.355071 TGACAACATATCAAGGCTGATGTTC 59.645 40.000 11.98 5.94 42.48 3.18
593 657 4.333649 ACAACATATCAAGGCTGATGTTCG 59.666 41.667 11.98 10.70 42.48 3.95
594 658 4.142609 ACATATCAAGGCTGATGTTCGT 57.857 40.909 8.95 0.00 42.48 3.85
595 659 5.276461 ACATATCAAGGCTGATGTTCGTA 57.724 39.130 8.95 0.00 42.48 3.43
596 660 5.050490 ACATATCAAGGCTGATGTTCGTAC 58.950 41.667 8.95 0.00 42.48 3.67
597 661 3.610040 ATCAAGGCTGATGTTCGTACA 57.390 42.857 0.00 0.00 40.94 2.90
598 662 3.394674 TCAAGGCTGATGTTCGTACAA 57.605 42.857 0.00 0.00 37.91 2.41
599 663 3.064207 TCAAGGCTGATGTTCGTACAAC 58.936 45.455 0.00 0.00 37.91 3.32
600 664 2.805671 CAAGGCTGATGTTCGTACAACA 59.194 45.455 11.53 11.53 37.91 3.33
601 665 2.413837 AGGCTGATGTTCGTACAACAC 58.586 47.619 11.42 0.00 37.91 3.32
602 666 1.463444 GGCTGATGTTCGTACAACACC 59.537 52.381 11.42 4.05 37.91 4.16
603 667 2.139917 GCTGATGTTCGTACAACACCA 58.860 47.619 11.42 8.41 37.91 4.17
604 668 2.096417 GCTGATGTTCGTACAACACCAC 60.096 50.000 11.42 8.10 37.91 4.16
605 669 2.128821 TGATGTTCGTACAACACCACG 58.871 47.619 11.42 0.00 37.91 4.94
606 670 2.223758 TGATGTTCGTACAACACCACGA 60.224 45.455 11.42 0.00 44.80 4.35
607 671 1.558741 TGTTCGTACAACACCACGAC 58.441 50.000 6.74 0.00 46.01 4.34
608 672 0.854705 GTTCGTACAACACCACGACC 59.145 55.000 0.00 0.00 46.01 4.79
609 673 0.746063 TTCGTACAACACCACGACCT 59.254 50.000 0.00 0.00 46.01 3.85
610 674 0.746063 TCGTACAACACCACGACCTT 59.254 50.000 0.00 0.00 41.89 3.50
611 675 1.136695 TCGTACAACACCACGACCTTT 59.863 47.619 0.00 0.00 41.89 3.11
612 676 1.935199 CGTACAACACCACGACCTTTT 59.065 47.619 0.00 0.00 40.56 2.27
613 677 2.033492 CGTACAACACCACGACCTTTTC 60.033 50.000 0.00 0.00 40.56 2.29
614 678 2.413310 ACAACACCACGACCTTTTCT 57.587 45.000 0.00 0.00 0.00 2.52
615 679 2.014128 ACAACACCACGACCTTTTCTG 58.986 47.619 0.00 0.00 0.00 3.02
616 680 2.285083 CAACACCACGACCTTTTCTGA 58.715 47.619 0.00 0.00 0.00 3.27
617 681 2.878406 CAACACCACGACCTTTTCTGAT 59.122 45.455 0.00 0.00 0.00 2.90
618 682 2.494059 ACACCACGACCTTTTCTGATG 58.506 47.619 0.00 0.00 0.00 3.07
619 683 1.806542 CACCACGACCTTTTCTGATGG 59.193 52.381 0.00 0.00 0.00 3.51
620 684 0.804989 CCACGACCTTTTCTGATGGC 59.195 55.000 0.00 0.00 0.00 4.40
621 685 1.611673 CCACGACCTTTTCTGATGGCT 60.612 52.381 0.00 0.00 0.00 4.75
622 686 1.466167 CACGACCTTTTCTGATGGCTG 59.534 52.381 0.00 0.00 0.00 4.85
623 687 1.347707 ACGACCTTTTCTGATGGCTGA 59.652 47.619 0.00 0.00 0.00 4.26
624 688 2.026822 ACGACCTTTTCTGATGGCTGAT 60.027 45.455 0.00 0.00 0.00 2.90
625 689 2.353889 CGACCTTTTCTGATGGCTGATG 59.646 50.000 0.00 0.00 0.00 3.07
626 690 3.350833 GACCTTTTCTGATGGCTGATGT 58.649 45.455 0.00 0.00 0.00 3.06
627 691 3.760684 GACCTTTTCTGATGGCTGATGTT 59.239 43.478 0.00 0.00 0.00 2.71
628 692 3.760684 ACCTTTTCTGATGGCTGATGTTC 59.239 43.478 0.00 0.00 0.00 3.18
629 693 3.129988 CCTTTTCTGATGGCTGATGTTCC 59.870 47.826 0.00 0.00 0.00 3.62
630 694 3.438216 TTTCTGATGGCTGATGTTCCA 57.562 42.857 0.00 0.00 36.70 3.53
631 695 2.408271 TCTGATGGCTGATGTTCCAC 57.592 50.000 0.00 0.00 34.81 4.02
632 696 1.629861 TCTGATGGCTGATGTTCCACA 59.370 47.619 0.00 0.00 34.81 4.17
633 697 2.040145 TCTGATGGCTGATGTTCCACAA 59.960 45.455 0.00 0.00 34.81 3.33
634 698 2.422479 CTGATGGCTGATGTTCCACAAG 59.578 50.000 0.00 0.00 34.81 3.16
635 699 2.224843 TGATGGCTGATGTTCCACAAGT 60.225 45.455 0.00 0.00 34.81 3.16
636 700 3.008923 TGATGGCTGATGTTCCACAAGTA 59.991 43.478 0.00 0.00 34.81 2.24
637 701 3.500448 TGGCTGATGTTCCACAAGTAA 57.500 42.857 0.00 0.00 0.00 2.24
638 702 4.032960 TGGCTGATGTTCCACAAGTAAT 57.967 40.909 0.00 0.00 0.00 1.89
639 703 4.009675 TGGCTGATGTTCCACAAGTAATC 58.990 43.478 0.00 0.00 0.00 1.75
640 704 4.263462 TGGCTGATGTTCCACAAGTAATCT 60.263 41.667 0.00 0.00 0.00 2.40
641 705 4.095483 GGCTGATGTTCCACAAGTAATCTG 59.905 45.833 0.00 0.00 0.00 2.90
642 706 4.937620 GCTGATGTTCCACAAGTAATCTGA 59.062 41.667 0.00 0.00 0.00 3.27
643 707 5.064452 GCTGATGTTCCACAAGTAATCTGAG 59.936 44.000 0.00 0.00 0.00 3.35
644 708 6.114187 TGATGTTCCACAAGTAATCTGAGT 57.886 37.500 0.00 0.00 0.00 3.41
645 709 6.166279 TGATGTTCCACAAGTAATCTGAGTC 58.834 40.000 0.00 0.00 0.00 3.36
646 710 4.556233 TGTTCCACAAGTAATCTGAGTCG 58.444 43.478 0.00 0.00 0.00 4.18
647 711 4.038763 TGTTCCACAAGTAATCTGAGTCGT 59.961 41.667 0.00 0.00 0.00 4.34
648 712 4.174411 TCCACAAGTAATCTGAGTCGTG 57.826 45.455 0.00 0.00 0.00 4.35
649 713 3.824443 TCCACAAGTAATCTGAGTCGTGA 59.176 43.478 0.00 0.00 0.00 4.35
650 714 4.462834 TCCACAAGTAATCTGAGTCGTGAT 59.537 41.667 0.00 0.00 0.00 3.06
651 715 5.047306 TCCACAAGTAATCTGAGTCGTGATT 60.047 40.000 13.37 13.37 36.87 2.57
652 716 5.639506 CCACAAGTAATCTGAGTCGTGATTT 59.360 40.000 13.86 0.00 35.01 2.17
653 717 6.401474 CCACAAGTAATCTGAGTCGTGATTTG 60.401 42.308 13.86 10.11 35.01 2.32
654 718 5.639506 ACAAGTAATCTGAGTCGTGATTTGG 59.360 40.000 13.86 6.71 35.01 3.28
655 719 5.407407 AGTAATCTGAGTCGTGATTTGGT 57.593 39.130 13.86 1.22 35.01 3.67
656 720 5.794894 AGTAATCTGAGTCGTGATTTGGTT 58.205 37.500 13.86 0.00 35.01 3.67
657 721 6.231211 AGTAATCTGAGTCGTGATTTGGTTT 58.769 36.000 13.86 0.00 35.01 3.27
658 722 5.362556 AATCTGAGTCGTGATTTGGTTTG 57.637 39.130 5.64 0.00 29.63 2.93
659 723 3.138304 TCTGAGTCGTGATTTGGTTTGG 58.862 45.455 0.00 0.00 0.00 3.28
660 724 2.878406 CTGAGTCGTGATTTGGTTTGGT 59.122 45.455 0.00 0.00 0.00 3.67
661 725 4.062293 CTGAGTCGTGATTTGGTTTGGTA 58.938 43.478 0.00 0.00 0.00 3.25
662 726 4.452825 TGAGTCGTGATTTGGTTTGGTAA 58.547 39.130 0.00 0.00 0.00 2.85
663 727 5.067273 TGAGTCGTGATTTGGTTTGGTAAT 58.933 37.500 0.00 0.00 0.00 1.89
664 728 5.049060 TGAGTCGTGATTTGGTTTGGTAATG 60.049 40.000 0.00 0.00 0.00 1.90
665 729 4.825085 AGTCGTGATTTGGTTTGGTAATGT 59.175 37.500 0.00 0.00 0.00 2.71
666 730 5.300792 AGTCGTGATTTGGTTTGGTAATGTT 59.699 36.000 0.00 0.00 0.00 2.71
667 731 6.487331 AGTCGTGATTTGGTTTGGTAATGTTA 59.513 34.615 0.00 0.00 0.00 2.41
668 732 7.013464 AGTCGTGATTTGGTTTGGTAATGTTAA 59.987 33.333 0.00 0.00 0.00 2.01
669 733 7.648510 GTCGTGATTTGGTTTGGTAATGTTAAA 59.351 33.333 0.00 0.00 0.00 1.52
670 734 8.195436 TCGTGATTTGGTTTGGTAATGTTAAAA 58.805 29.630 0.00 0.00 0.00 1.52
671 735 8.983724 CGTGATTTGGTTTGGTAATGTTAAAAT 58.016 29.630 0.00 0.00 0.00 1.82
673 737 9.495572 TGATTTGGTTTGGTAATGTTAAAATCC 57.504 29.630 0.00 0.00 32.92 3.01
674 738 9.719355 GATTTGGTTTGGTAATGTTAAAATCCT 57.281 29.630 0.00 0.00 0.00 3.24
675 739 8.894768 TTTGGTTTGGTAATGTTAAAATCCTG 57.105 30.769 0.00 0.00 0.00 3.86
676 740 7.841282 TGGTTTGGTAATGTTAAAATCCTGA 57.159 32.000 0.00 0.00 0.00 3.86
677 741 8.429237 TGGTTTGGTAATGTTAAAATCCTGAT 57.571 30.769 0.00 0.00 0.00 2.90
678 742 8.310382 TGGTTTGGTAATGTTAAAATCCTGATG 58.690 33.333 0.00 0.00 0.00 3.07
679 743 8.311109 GGTTTGGTAATGTTAAAATCCTGATGT 58.689 33.333 0.00 0.00 0.00 3.06
680 744 9.353999 GTTTGGTAATGTTAAAATCCTGATGTC 57.646 33.333 0.00 0.00 0.00 3.06
681 745 8.642935 TTGGTAATGTTAAAATCCTGATGTCA 57.357 30.769 0.00 0.00 0.00 3.58
682 746 8.279970 TGGTAATGTTAAAATCCTGATGTCAG 57.720 34.615 3.01 3.01 43.40 3.51
683 747 8.106462 TGGTAATGTTAAAATCCTGATGTCAGA 58.894 33.333 11.47 0.00 46.59 3.27
684 748 9.125026 GGTAATGTTAAAATCCTGATGTCAGAT 57.875 33.333 11.47 1.25 46.59 2.90
688 752 8.868522 TGTTAAAATCCTGATGTCAGATTTCT 57.131 30.769 11.47 8.56 46.59 2.52
689 753 9.958180 TGTTAAAATCCTGATGTCAGATTTCTA 57.042 29.630 11.47 7.89 46.59 2.10
693 757 9.690913 AAAATCCTGATGTCAGATTTCTAATCA 57.309 29.630 11.47 0.00 46.59 2.57
694 758 9.863650 AAATCCTGATGTCAGATTTCTAATCAT 57.136 29.630 11.47 0.00 46.59 2.45
695 759 8.850007 ATCCTGATGTCAGATTTCTAATCATG 57.150 34.615 11.47 0.00 46.59 3.07
696 760 7.222161 TCCTGATGTCAGATTTCTAATCATGG 58.778 38.462 11.47 2.40 46.59 3.66
697 761 6.072618 CCTGATGTCAGATTTCTAATCATGGC 60.073 42.308 11.47 1.06 46.59 4.40
698 762 6.358991 TGATGTCAGATTTCTAATCATGGCA 58.641 36.000 0.00 0.00 0.00 4.92
699 763 6.829811 TGATGTCAGATTTCTAATCATGGCAA 59.170 34.615 0.00 0.00 0.00 4.52
700 764 7.339976 TGATGTCAGATTTCTAATCATGGCAAA 59.660 33.333 0.00 0.00 0.00 3.68
701 765 7.649533 TGTCAGATTTCTAATCATGGCAAAT 57.350 32.000 0.00 0.00 0.00 2.32
702 766 8.070034 TGTCAGATTTCTAATCATGGCAAATT 57.930 30.769 0.00 0.00 0.00 1.82
703 767 7.977293 TGTCAGATTTCTAATCATGGCAAATTG 59.023 33.333 8.30 0.00 0.00 2.32
704 768 8.192774 GTCAGATTTCTAATCATGGCAAATTGA 58.807 33.333 0.00 0.64 0.00 2.57
705 769 8.751242 TCAGATTTCTAATCATGGCAAATTGAA 58.249 29.630 0.00 7.36 0.00 2.69
706 770 8.814235 CAGATTTCTAATCATGGCAAATTGAAC 58.186 33.333 0.00 0.00 0.00 3.18
707 771 7.703621 AGATTTCTAATCATGGCAAATTGAACG 59.296 33.333 0.00 0.00 0.00 3.95
708 772 5.895636 TCTAATCATGGCAAATTGAACGT 57.104 34.783 0.00 0.00 0.00 3.99
709 773 6.266168 TCTAATCATGGCAAATTGAACGTT 57.734 33.333 0.00 0.00 0.00 3.99
710 774 6.686630 TCTAATCATGGCAAATTGAACGTTT 58.313 32.000 0.46 0.00 0.00 3.60
711 775 7.151308 TCTAATCATGGCAAATTGAACGTTTT 58.849 30.769 0.46 0.00 0.00 2.43
712 776 6.616774 AATCATGGCAAATTGAACGTTTTT 57.383 29.167 0.46 0.00 0.00 1.94
747 811 6.354080 CAGCGTGTTTTCATTTATGTTTTGG 58.646 36.000 0.00 0.00 0.00 3.28
1302 1411 2.485122 GATCTTTTGGCGGCCACG 59.515 61.111 23.78 13.30 44.63 4.94
1303 1412 2.033448 ATCTTTTGGCGGCCACGA 59.967 55.556 23.78 18.27 44.60 4.35
1304 1413 1.982073 GATCTTTTGGCGGCCACGAG 61.982 60.000 23.78 21.22 44.60 4.18
1305 1414 4.404654 CTTTTGGCGGCCACGAGC 62.405 66.667 23.78 0.00 44.60 5.03
2313 2434 2.676121 CCGGAAGCCATTGTGCCA 60.676 61.111 0.00 0.00 0.00 4.92
2317 2438 0.037046 GGAAGCCATTGTGCCAAAGG 60.037 55.000 5.21 5.21 0.00 3.11
2424 2545 2.088950 TCGGCTTCTTTAAACGGGAG 57.911 50.000 0.00 0.00 0.00 4.30
2615 2751 7.710475 CACCAACAACTAATCAAAAACCATCTT 59.290 33.333 0.00 0.00 0.00 2.40
2616 2752 7.926018 ACCAACAACTAATCAAAAACCATCTTC 59.074 33.333 0.00 0.00 0.00 2.87
2617 2753 8.143835 CCAACAACTAATCAAAAACCATCTTCT 58.856 33.333 0.00 0.00 0.00 2.85
2618 2754 9.185192 CAACAACTAATCAAAAACCATCTTCTC 57.815 33.333 0.00 0.00 0.00 2.87
2619 2755 8.697507 ACAACTAATCAAAAACCATCTTCTCT 57.302 30.769 0.00 0.00 0.00 3.10
2620 2756 8.571336 ACAACTAATCAAAAACCATCTTCTCTG 58.429 33.333 0.00 0.00 0.00 3.35
2621 2757 8.571336 CAACTAATCAAAAACCATCTTCTCTGT 58.429 33.333 0.00 0.00 0.00 3.41
2622 2758 9.793259 AACTAATCAAAAACCATCTTCTCTGTA 57.207 29.630 0.00 0.00 0.00 2.74
2623 2759 9.965902 ACTAATCAAAAACCATCTTCTCTGTAT 57.034 29.630 0.00 0.00 0.00 2.29
2731 2898 2.524394 TCCCTCGGCATCCCTAGC 60.524 66.667 0.00 0.00 0.00 3.42
2820 2987 2.501723 TCCTCCTCCTAGTGATGCAAAC 59.498 50.000 0.00 0.00 0.00 2.93
2822 2989 3.307691 CCTCCTCCTAGTGATGCAAACAA 60.308 47.826 0.00 0.00 0.00 2.83
2823 2990 4.326826 CTCCTCCTAGTGATGCAAACAAA 58.673 43.478 0.00 0.00 0.00 2.83
2824 2991 4.072131 TCCTCCTAGTGATGCAAACAAAC 58.928 43.478 0.00 0.00 0.00 2.93
2961 3132 4.673320 CGAGAAAGAACAACAAAACCGGTT 60.673 41.667 15.86 15.86 0.00 4.44
2972 3143 3.207778 CAAAACCGGTTACAAGGAGACA 58.792 45.455 22.60 0.00 0.00 3.41
2979 3151 4.497006 CCGGTTACAAGGAGACAGTATACG 60.497 50.000 0.00 0.00 0.00 3.06
2992 3164 5.303078 AGACAGTATACGGAGCATGAGAATT 59.697 40.000 10.15 0.00 0.00 2.17
3125 3297 4.380531 AGGAATAGCACATGATAACCACG 58.619 43.478 0.00 0.00 0.00 4.94
3145 3317 4.209288 CACGGGTTCACTCGAATATCATTC 59.791 45.833 6.15 0.00 32.61 2.67
3205 3377 5.200454 CGCTATTGATCATTGAACGAAAGG 58.800 41.667 0.00 0.00 0.00 3.11
3212 3384 5.765677 TGATCATTGAACGAAAGGGTGTTTA 59.234 36.000 0.00 0.00 0.00 2.01
3213 3385 6.432783 TGATCATTGAACGAAAGGGTGTTTAT 59.567 34.615 0.00 0.00 0.00 1.40
3241 3413 9.747898 TTCATGTCTATGTTTTACCAAACCTAT 57.252 29.630 0.00 0.00 41.60 2.57
3265 3437 2.614481 GGTCACACGCTTAAGGGATTCA 60.614 50.000 24.81 4.53 0.00 2.57
3279 3451 5.614324 AGGGATTCACGATTTGATGACTA 57.386 39.130 0.00 0.00 32.84 2.59
3301 3473 9.522804 GACTATTATTGGAGTAAGAGTTGTGAG 57.477 37.037 0.00 0.00 36.54 3.51
3306 3478 9.793259 TTATTGGAGTAAGAGTTGTGAGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
3365 3537 4.703897 TCAAGAGAAACCGAATGTGTTCT 58.296 39.130 0.00 0.00 32.00 3.01
3368 3540 2.484264 GAGAAACCGAATGTGTTCTGGG 59.516 50.000 0.00 0.00 34.47 4.45
3506 3688 8.154420 AGAAAATACTAAAAGGCCTAGTGGTA 57.846 34.615 15.69 13.96 35.27 3.25
3544 3726 2.517980 AGGGCCCAATAACATATGTGGT 59.482 45.455 27.56 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 139 1.676014 CGAGTTGGCCCTTTGTCCTAG 60.676 57.143 0.00 0.00 0.00 3.02
157 161 6.548251 CCTAAAAACCTAAAACCTTGGTCTCA 59.452 38.462 0.00 0.00 32.98 3.27
190 212 3.496130 GTCACCGATTCATCCATGACATC 59.504 47.826 0.00 0.00 37.76 3.06
280 306 1.079503 GCTCCAAAAGCCTCGTACAG 58.920 55.000 0.00 0.00 45.92 2.74
312 338 6.763135 GTGATAATGGATTCACTGCTCAAGTA 59.237 38.462 0.00 0.00 39.30 2.24
577 641 3.610040 TGTACGAACATCAGCCTTGAT 57.390 42.857 0.00 0.00 44.87 2.57
586 650 2.396601 TCGTGGTGTTGTACGAACATC 58.603 47.619 12.07 12.03 45.18 3.06
587 651 2.512485 TCGTGGTGTTGTACGAACAT 57.488 45.000 12.07 0.00 45.18 2.71
591 655 0.746063 AAGGTCGTGGTGTTGTACGA 59.254 50.000 0.00 0.00 45.87 3.43
592 656 1.574134 AAAGGTCGTGGTGTTGTACG 58.426 50.000 0.00 0.00 41.38 3.67
593 657 3.001939 CAGAAAAGGTCGTGGTGTTGTAC 59.998 47.826 0.00 0.00 0.00 2.90
594 658 3.118702 TCAGAAAAGGTCGTGGTGTTGTA 60.119 43.478 0.00 0.00 0.00 2.41
595 659 2.014128 CAGAAAAGGTCGTGGTGTTGT 58.986 47.619 0.00 0.00 0.00 3.32
596 660 2.285083 TCAGAAAAGGTCGTGGTGTTG 58.715 47.619 0.00 0.00 0.00 3.33
597 661 2.702592 TCAGAAAAGGTCGTGGTGTT 57.297 45.000 0.00 0.00 0.00 3.32
598 662 2.494059 CATCAGAAAAGGTCGTGGTGT 58.506 47.619 0.00 0.00 0.00 4.16
599 663 1.806542 CCATCAGAAAAGGTCGTGGTG 59.193 52.381 0.00 0.00 0.00 4.17
600 664 1.882352 GCCATCAGAAAAGGTCGTGGT 60.882 52.381 0.00 0.00 33.34 4.16
601 665 0.804989 GCCATCAGAAAAGGTCGTGG 59.195 55.000 0.00 0.00 33.69 4.94
602 666 1.466167 CAGCCATCAGAAAAGGTCGTG 59.534 52.381 0.00 0.00 0.00 4.35
603 667 1.347707 TCAGCCATCAGAAAAGGTCGT 59.652 47.619 0.00 0.00 0.00 4.34
604 668 2.099141 TCAGCCATCAGAAAAGGTCG 57.901 50.000 0.00 0.00 0.00 4.79
605 669 3.350833 ACATCAGCCATCAGAAAAGGTC 58.649 45.455 0.00 0.00 0.00 3.85
606 670 3.446442 ACATCAGCCATCAGAAAAGGT 57.554 42.857 0.00 0.00 0.00 3.50
607 671 3.129988 GGAACATCAGCCATCAGAAAAGG 59.870 47.826 0.00 0.00 0.00 3.11
608 672 3.760151 TGGAACATCAGCCATCAGAAAAG 59.240 43.478 0.00 0.00 0.00 2.27
609 673 3.507233 GTGGAACATCAGCCATCAGAAAA 59.493 43.478 0.00 0.00 44.52 2.29
610 674 3.084039 GTGGAACATCAGCCATCAGAAA 58.916 45.455 0.00 0.00 44.52 2.52
611 675 2.040145 TGTGGAACATCAGCCATCAGAA 59.960 45.455 0.00 0.00 45.67 3.02
612 676 1.629861 TGTGGAACATCAGCCATCAGA 59.370 47.619 0.00 0.00 45.67 3.27
613 677 2.118313 TGTGGAACATCAGCCATCAG 57.882 50.000 0.00 0.00 45.67 2.90
625 689 4.386049 CACGACTCAGATTACTTGTGGAAC 59.614 45.833 0.00 0.00 37.35 3.62
626 690 4.279922 TCACGACTCAGATTACTTGTGGAA 59.720 41.667 0.00 0.00 0.00 3.53
627 691 3.824443 TCACGACTCAGATTACTTGTGGA 59.176 43.478 0.00 0.00 0.00 4.02
628 692 4.174411 TCACGACTCAGATTACTTGTGG 57.826 45.455 0.00 0.00 0.00 4.17
629 693 6.401474 CCAAATCACGACTCAGATTACTTGTG 60.401 42.308 0.00 0.00 33.58 3.33
630 694 5.639506 CCAAATCACGACTCAGATTACTTGT 59.360 40.000 0.00 0.00 33.58 3.16
631 695 5.639506 ACCAAATCACGACTCAGATTACTTG 59.360 40.000 0.00 0.00 33.58 3.16
632 696 5.794894 ACCAAATCACGACTCAGATTACTT 58.205 37.500 0.00 0.00 33.58 2.24
633 697 5.407407 ACCAAATCACGACTCAGATTACT 57.593 39.130 0.00 0.00 33.58 2.24
634 698 6.307155 CAAACCAAATCACGACTCAGATTAC 58.693 40.000 0.00 0.00 33.58 1.89
635 699 5.411361 CCAAACCAAATCACGACTCAGATTA 59.589 40.000 0.00 0.00 33.58 1.75
636 700 4.216257 CCAAACCAAATCACGACTCAGATT 59.784 41.667 0.00 0.00 36.09 2.40
637 701 3.753272 CCAAACCAAATCACGACTCAGAT 59.247 43.478 0.00 0.00 0.00 2.90
638 702 3.138304 CCAAACCAAATCACGACTCAGA 58.862 45.455 0.00 0.00 0.00 3.27
639 703 2.878406 ACCAAACCAAATCACGACTCAG 59.122 45.455 0.00 0.00 0.00 3.35
640 704 2.925724 ACCAAACCAAATCACGACTCA 58.074 42.857 0.00 0.00 0.00 3.41
641 705 5.048991 ACATTACCAAACCAAATCACGACTC 60.049 40.000 0.00 0.00 0.00 3.36
642 706 4.825085 ACATTACCAAACCAAATCACGACT 59.175 37.500 0.00 0.00 0.00 4.18
643 707 5.116069 ACATTACCAAACCAAATCACGAC 57.884 39.130 0.00 0.00 0.00 4.34
644 708 5.776173 AACATTACCAAACCAAATCACGA 57.224 34.783 0.00 0.00 0.00 4.35
645 709 7.932120 TTTAACATTACCAAACCAAATCACG 57.068 32.000 0.00 0.00 0.00 4.35
647 711 9.495572 GGATTTTAACATTACCAAACCAAATCA 57.504 29.630 0.00 0.00 32.23 2.57
648 712 9.719355 AGGATTTTAACATTACCAAACCAAATC 57.281 29.630 0.00 0.00 0.00 2.17
649 713 9.500785 CAGGATTTTAACATTACCAAACCAAAT 57.499 29.630 0.00 0.00 0.00 2.32
650 714 8.705594 TCAGGATTTTAACATTACCAAACCAAA 58.294 29.630 0.00 0.00 0.00 3.28
651 715 8.251383 TCAGGATTTTAACATTACCAAACCAA 57.749 30.769 0.00 0.00 0.00 3.67
652 716 7.841282 TCAGGATTTTAACATTACCAAACCA 57.159 32.000 0.00 0.00 0.00 3.67
653 717 8.311109 ACATCAGGATTTTAACATTACCAAACC 58.689 33.333 0.00 0.00 0.00 3.27
654 718 9.353999 GACATCAGGATTTTAACATTACCAAAC 57.646 33.333 0.00 0.00 0.00 2.93
655 719 9.083422 TGACATCAGGATTTTAACATTACCAAA 57.917 29.630 0.00 0.00 0.00 3.28
656 720 8.642935 TGACATCAGGATTTTAACATTACCAA 57.357 30.769 0.00 0.00 0.00 3.67
657 721 8.106462 TCTGACATCAGGATTTTAACATTACCA 58.894 33.333 8.99 0.00 43.91 3.25
658 722 8.506168 TCTGACATCAGGATTTTAACATTACC 57.494 34.615 8.99 0.00 43.91 2.85
662 726 9.471702 AGAAATCTGACATCAGGATTTTAACAT 57.528 29.630 8.99 0.00 43.91 2.71
663 727 8.868522 AGAAATCTGACATCAGGATTTTAACA 57.131 30.769 8.99 0.00 43.91 2.41
667 731 9.690913 TGATTAGAAATCTGACATCAGGATTTT 57.309 29.630 8.99 6.98 43.91 1.82
668 732 9.863650 ATGATTAGAAATCTGACATCAGGATTT 57.136 29.630 8.99 12.14 43.91 2.17
669 733 9.286170 CATGATTAGAAATCTGACATCAGGATT 57.714 33.333 8.99 4.72 43.91 3.01
670 734 7.883833 CCATGATTAGAAATCTGACATCAGGAT 59.116 37.037 8.99 0.00 43.91 3.24
671 735 7.222161 CCATGATTAGAAATCTGACATCAGGA 58.778 38.462 8.99 0.00 43.91 3.86
672 736 6.072618 GCCATGATTAGAAATCTGACATCAGG 60.073 42.308 8.99 1.14 43.91 3.86
673 737 6.485648 TGCCATGATTAGAAATCTGACATCAG 59.514 38.462 2.24 2.24 45.08 2.90
674 738 6.358991 TGCCATGATTAGAAATCTGACATCA 58.641 36.000 0.00 0.00 0.00 3.07
675 739 6.872628 TGCCATGATTAGAAATCTGACATC 57.127 37.500 0.00 0.00 0.00 3.06
676 740 7.649533 TTTGCCATGATTAGAAATCTGACAT 57.350 32.000 0.00 0.00 0.00 3.06
677 741 7.649533 ATTTGCCATGATTAGAAATCTGACA 57.350 32.000 0.00 0.00 0.00 3.58
678 742 8.192774 TCAATTTGCCATGATTAGAAATCTGAC 58.807 33.333 0.00 0.00 0.00 3.51
679 743 8.296211 TCAATTTGCCATGATTAGAAATCTGA 57.704 30.769 0.00 0.00 0.00 3.27
680 744 8.814235 GTTCAATTTGCCATGATTAGAAATCTG 58.186 33.333 0.00 0.00 0.00 2.90
681 745 7.703621 CGTTCAATTTGCCATGATTAGAAATCT 59.296 33.333 0.00 0.00 0.00 2.40
682 746 7.489113 ACGTTCAATTTGCCATGATTAGAAATC 59.511 33.333 0.00 0.00 0.00 2.17
683 747 7.322664 ACGTTCAATTTGCCATGATTAGAAAT 58.677 30.769 0.00 0.00 0.00 2.17
684 748 6.686630 ACGTTCAATTTGCCATGATTAGAAA 58.313 32.000 0.00 0.00 0.00 2.52
685 749 6.266168 ACGTTCAATTTGCCATGATTAGAA 57.734 33.333 0.00 0.00 0.00 2.10
686 750 5.895636 ACGTTCAATTTGCCATGATTAGA 57.104 34.783 0.00 0.00 0.00 2.10
687 751 6.949578 AAACGTTCAATTTGCCATGATTAG 57.050 33.333 0.00 0.00 0.00 1.73
688 752 7.721286 AAAAACGTTCAATTTGCCATGATTA 57.279 28.000 0.00 0.00 0.00 1.75
689 753 6.616774 AAAAACGTTCAATTTGCCATGATT 57.383 29.167 0.00 0.00 0.00 2.57
710 774 3.932545 ACACGCTGCCATGATTAAAAA 57.067 38.095 5.64 0.00 0.00 1.94
711 775 3.932545 AACACGCTGCCATGATTAAAA 57.067 38.095 5.64 0.00 0.00 1.52
712 776 3.932545 AAACACGCTGCCATGATTAAA 57.067 38.095 5.64 0.00 0.00 1.52
713 777 3.254411 TGAAAACACGCTGCCATGATTAA 59.746 39.130 5.64 0.00 0.00 1.40
714 778 2.816672 TGAAAACACGCTGCCATGATTA 59.183 40.909 5.64 0.00 0.00 1.75
715 779 1.612950 TGAAAACACGCTGCCATGATT 59.387 42.857 5.64 0.00 0.00 2.57
716 780 1.246649 TGAAAACACGCTGCCATGAT 58.753 45.000 5.64 0.00 0.00 2.45
717 781 1.246649 ATGAAAACACGCTGCCATGA 58.753 45.000 5.64 0.00 0.00 3.07
718 782 2.068837 AATGAAAACACGCTGCCATG 57.931 45.000 0.00 0.00 0.00 3.66
719 783 2.818130 AAATGAAAACACGCTGCCAT 57.182 40.000 0.00 0.00 0.00 4.40
720 784 3.005261 ACATAAATGAAAACACGCTGCCA 59.995 39.130 0.00 0.00 0.00 4.92
721 785 3.574614 ACATAAATGAAAACACGCTGCC 58.425 40.909 0.00 0.00 0.00 4.85
722 786 5.574815 AAACATAAATGAAAACACGCTGC 57.425 34.783 0.00 0.00 0.00 5.25
723 787 6.019156 ACCAAAACATAAATGAAAACACGCTG 60.019 34.615 0.00 0.00 0.00 5.18
724 788 6.045955 ACCAAAACATAAATGAAAACACGCT 58.954 32.000 0.00 0.00 0.00 5.07
725 789 6.280537 ACCAAAACATAAATGAAAACACGC 57.719 33.333 0.00 0.00 0.00 5.34
726 790 7.122550 CCAACCAAAACATAAATGAAAACACG 58.877 34.615 0.00 0.00 0.00 4.49
747 811 2.659428 CTCCCCATTTCTCATCCCAAC 58.341 52.381 0.00 0.00 0.00 3.77
1324 1433 2.261671 CTCGAACGTGGACAGGGG 59.738 66.667 0.00 0.00 0.00 4.79
2205 2326 3.228017 GGGTCTAGGAGGCTCGCC 61.228 72.222 8.69 0.00 0.00 5.54
2208 2329 0.179234 GCTTTGGGTCTAGGAGGCTC 59.821 60.000 5.78 5.78 0.00 4.70
2210 2331 0.107459 CAGCTTTGGGTCTAGGAGGC 60.107 60.000 0.00 0.00 0.00 4.70
2313 2434 0.550914 TCAACACCAGCTCCACCTTT 59.449 50.000 0.00 0.00 0.00 3.11
2317 2438 0.962356 CCCATCAACACCAGCTCCAC 60.962 60.000 0.00 0.00 0.00 4.02
2731 2898 1.374758 GTTCCGGACTCTGCACCAG 60.375 63.158 1.83 0.00 0.00 4.00
2918 3086 3.695556 TCGTTGACATGTTCCGGTATCTA 59.304 43.478 0.00 0.00 0.00 1.98
2961 3132 3.881688 GCTCCGTATACTGTCTCCTTGTA 59.118 47.826 0.56 0.00 0.00 2.41
2972 3143 6.490381 TGAGTAATTCTCATGCTCCGTATACT 59.510 38.462 0.56 0.00 46.77 2.12
3099 3271 7.981789 CGTGGTTATCATGTGCTATTCCTATAT 59.018 37.037 0.00 0.00 0.00 0.86
3100 3272 7.320399 CGTGGTTATCATGTGCTATTCCTATA 58.680 38.462 0.00 0.00 0.00 1.31
3101 3273 6.166279 CGTGGTTATCATGTGCTATTCCTAT 58.834 40.000 0.00 0.00 0.00 2.57
3102 3274 5.510690 CCGTGGTTATCATGTGCTATTCCTA 60.511 44.000 0.00 0.00 0.00 2.94
3103 3275 4.380531 CGTGGTTATCATGTGCTATTCCT 58.619 43.478 0.00 0.00 0.00 3.36
3113 3285 2.936498 GAGTGAACCCGTGGTTATCATG 59.064 50.000 8.11 0.00 46.95 3.07
3125 3297 4.209288 CACGAATGATATTCGAGTGAACCC 59.791 45.833 25.20 0.00 43.97 4.11
3174 3346 4.923281 TCAATGATCAATAGCGGTATCGTG 59.077 41.667 7.72 3.81 38.89 4.35
3178 3350 5.538118 TCGTTCAATGATCAATAGCGGTAT 58.462 37.500 0.00 0.16 0.00 2.73
3180 3352 3.792401 TCGTTCAATGATCAATAGCGGT 58.208 40.909 0.00 0.00 0.00 5.68
3212 3384 8.303876 GGTTTGGTAAAACATAGACATGAACAT 58.696 33.333 0.00 0.00 46.30 2.71
3213 3385 7.504238 AGGTTTGGTAAAACATAGACATGAACA 59.496 33.333 0.00 0.00 46.30 3.18
3241 3413 0.899720 CCCTTAAGCGTGTGACCCTA 59.100 55.000 0.00 0.00 0.00 3.53
3249 3421 2.004583 TCGTGAATCCCTTAAGCGTG 57.995 50.000 0.00 0.00 0.00 5.34
3251 3423 3.621268 TCAAATCGTGAATCCCTTAAGCG 59.379 43.478 0.00 0.00 31.51 4.68
3252 3424 5.296780 TCATCAAATCGTGAATCCCTTAAGC 59.703 40.000 0.00 0.00 40.50 3.09
3253 3425 6.540189 AGTCATCAAATCGTGAATCCCTTAAG 59.460 38.462 0.00 0.00 40.50 1.85
3254 3426 6.414732 AGTCATCAAATCGTGAATCCCTTAA 58.585 36.000 0.00 0.00 40.50 1.85
3255 3427 5.989477 AGTCATCAAATCGTGAATCCCTTA 58.011 37.500 0.00 0.00 40.50 2.69
3279 3451 9.793259 TTTTCTCACAACTCTTACTCCAATAAT 57.207 29.630 0.00 0.00 0.00 1.28
3345 3517 3.815401 CCAGAACACATTCGGTTTCTCTT 59.185 43.478 0.00 0.00 40.04 2.85
3360 3532 1.200519 CTTCCGGTATCCCCAGAACA 58.799 55.000 0.00 0.00 0.00 3.18
3365 3537 2.326428 GAATCTCTTCCGGTATCCCCA 58.674 52.381 0.00 0.00 0.00 4.96
3368 3540 1.272769 CCCGAATCTCTTCCGGTATCC 59.727 57.143 0.00 0.00 0.00 2.59
3386 3558 7.555195 CCTATATATCAATTTCCGGTAAACCCC 59.445 40.741 0.00 0.00 0.00 4.95
3470 3652 9.921637 CCTTTTAGTATTTTCTTTGGCATGTTA 57.078 29.630 0.00 0.00 0.00 2.41
3473 3655 6.313658 GGCCTTTTAGTATTTTCTTTGGCATG 59.686 38.462 0.00 0.00 38.47 4.06
3474 3656 6.213397 AGGCCTTTTAGTATTTTCTTTGGCAT 59.787 34.615 0.00 0.00 38.47 4.40
3506 3688 2.695585 CCCTAGGGCCAATAACTCTCT 58.304 52.381 16.90 0.00 0.00 3.10
3533 3715 4.778213 AGTCTATGGCACCACATATGTT 57.222 40.909 5.37 0.00 33.22 2.71
3534 3716 4.708177 GAAGTCTATGGCACCACATATGT 58.292 43.478 1.41 1.41 33.22 2.29
3544 3726 0.036765 AAACGGCGAAGTCTATGGCA 60.037 50.000 16.62 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.