Multiple sequence alignment - TraesCS1D01G450700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G450700 chr1D 100.000 2830 0 0 1 2830 492937746 492940575 0.000000e+00 5227.0
1 TraesCS1D01G450700 chr1D 97.104 518 15 0 134 651 492911645 492912162 0.000000e+00 874.0
2 TraesCS1D01G450700 chr1D 96.911 518 16 0 134 651 492912404 492912921 0.000000e+00 869.0
3 TraesCS1D01G450700 chr7B 94.884 2502 98 12 134 2611 554184688 554182193 0.000000e+00 3884.0
4 TraesCS1D01G450700 chr7B 95.264 1816 74 6 742 2547 671264904 671263091 0.000000e+00 2867.0
5 TraesCS1D01G450700 chr1B 92.889 2489 145 15 134 2608 179141087 179138617 0.000000e+00 3587.0
6 TraesCS1D01G450700 chr1B 94.498 618 31 1 134 751 630555098 630554484 0.000000e+00 950.0
7 TraesCS1D01G450700 chr1B 87.234 94 2 2 2740 2823 688755549 688755456 6.450000e-17 99.0
8 TraesCS1D01G450700 chr1B 100.000 45 0 0 2606 2650 688755620 688755576 1.810000e-12 84.2
9 TraesCS1D01G450700 chr2A 94.402 2340 92 18 287 2607 191974629 191976948 0.000000e+00 3559.0
10 TraesCS1D01G450700 chr2A 93.718 2340 110 18 287 2607 77762029 77759708 0.000000e+00 3472.0
11 TraesCS1D01G450700 chr2A 97.122 139 4 0 1 139 96021729 96021591 4.710000e-58 235.0
12 TraesCS1D01G450700 chr2A 97.122 139 4 0 1 139 595126957 595126819 4.710000e-58 235.0
13 TraesCS1D01G450700 chr3A 93.846 2340 108 18 287 2607 738756149 738753827 0.000000e+00 3491.0
14 TraesCS1D01G450700 chr3A 93.587 2339 114 16 287 2607 601662251 601659931 0.000000e+00 3456.0
15 TraesCS1D01G450700 chr3A 97.810 137 3 0 1 137 658872941 658873077 1.310000e-58 237.0
16 TraesCS1D01G450700 chr3A 95.270 148 5 2 1 148 12622645 12622500 1.700000e-57 233.0
17 TraesCS1D01G450700 chr3A 94.631 149 6 2 1 147 50686665 50686517 2.190000e-56 230.0
18 TraesCS1D01G450700 chr1A 93.911 2332 105 19 295 2607 406150855 406153168 0.000000e+00 3485.0
19 TraesCS1D01G450700 chr1A 93.686 2344 107 18 287 2607 13803267 13800942 0.000000e+00 3470.0
20 TraesCS1D01G450700 chr7A 93.562 2330 117 18 287 2607 441745450 441747755 0.000000e+00 3441.0
21 TraesCS1D01G450700 chr5B 94.896 627 23 1 134 751 67028636 67028010 0.000000e+00 972.0
22 TraesCS1D01G450700 chr6B 94.737 627 24 1 134 751 678840496 678841122 0.000000e+00 966.0
23 TraesCS1D01G450700 chr3D 94.737 627 24 1 134 751 418384663 418384037 0.000000e+00 966.0
24 TraesCS1D01G450700 chr4B 94.099 627 28 1 134 751 561750669 561750043 0.000000e+00 944.0
25 TraesCS1D01G450700 chr2D 97.810 137 3 0 1 137 92707844 92707708 1.310000e-58 237.0
26 TraesCS1D01G450700 chr6A 97.122 139 4 0 1 139 566799890 566799752 4.710000e-58 235.0
27 TraesCS1D01G450700 chr4A 97.143 140 3 1 1 139 13868972 13868833 4.710000e-58 235.0
28 TraesCS1D01G450700 chr4A 95.333 150 4 2 1 149 562977026 562976879 4.710000e-58 235.0
29 TraesCS1D01G450700 chr4D 97.753 89 2 0 2519 2607 484240429 484240341 1.360000e-33 154.0
30 TraesCS1D01G450700 chr4D 90.909 110 8 2 2519 2627 410646946 410646838 2.270000e-31 147.0
31 TraesCS1D01G450700 chr7D 96.667 90 2 1 2519 2607 66451294 66451383 6.320000e-32 148.0
32 TraesCS1D01G450700 chr6D 96.667 90 2 1 2519 2607 458370694 458370605 6.320000e-32 148.0
33 TraesCS1D01G450700 chr5A 85.616 146 12 4 2467 2607 702259560 702259701 8.170000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G450700 chr1D 492937746 492940575 2829 False 5227.0 5227 100.0000 1 2830 1 chr1D.!!$F1 2829
1 TraesCS1D01G450700 chr1D 492911645 492912921 1276 False 871.5 874 97.0075 134 651 2 chr1D.!!$F2 517
2 TraesCS1D01G450700 chr7B 554182193 554184688 2495 True 3884.0 3884 94.8840 134 2611 1 chr7B.!!$R1 2477
3 TraesCS1D01G450700 chr7B 671263091 671264904 1813 True 2867.0 2867 95.2640 742 2547 1 chr7B.!!$R2 1805
4 TraesCS1D01G450700 chr1B 179138617 179141087 2470 True 3587.0 3587 92.8890 134 2608 1 chr1B.!!$R1 2474
5 TraesCS1D01G450700 chr1B 630554484 630555098 614 True 950.0 950 94.4980 134 751 1 chr1B.!!$R2 617
6 TraesCS1D01G450700 chr2A 191974629 191976948 2319 False 3559.0 3559 94.4020 287 2607 1 chr2A.!!$F1 2320
7 TraesCS1D01G450700 chr2A 77759708 77762029 2321 True 3472.0 3472 93.7180 287 2607 1 chr2A.!!$R1 2320
8 TraesCS1D01G450700 chr3A 738753827 738756149 2322 True 3491.0 3491 93.8460 287 2607 1 chr3A.!!$R4 2320
9 TraesCS1D01G450700 chr3A 601659931 601662251 2320 True 3456.0 3456 93.5870 287 2607 1 chr3A.!!$R3 2320
10 TraesCS1D01G450700 chr1A 406150855 406153168 2313 False 3485.0 3485 93.9110 295 2607 1 chr1A.!!$F1 2312
11 TraesCS1D01G450700 chr1A 13800942 13803267 2325 True 3470.0 3470 93.6860 287 2607 1 chr1A.!!$R1 2320
12 TraesCS1D01G450700 chr7A 441745450 441747755 2305 False 3441.0 3441 93.5620 287 2607 1 chr7A.!!$F1 2320
13 TraesCS1D01G450700 chr5B 67028010 67028636 626 True 972.0 972 94.8960 134 751 1 chr5B.!!$R1 617
14 TraesCS1D01G450700 chr6B 678840496 678841122 626 False 966.0 966 94.7370 134 751 1 chr6B.!!$F1 617
15 TraesCS1D01G450700 chr3D 418384037 418384663 626 True 966.0 966 94.7370 134 751 1 chr3D.!!$R1 617
16 TraesCS1D01G450700 chr4B 561750043 561750669 626 True 944.0 944 94.0990 134 751 1 chr4B.!!$R1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.178885 TCCCTTCCTCTTCGGGGAAA 60.179 55.0 0.0 0.0 44.1 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2797 0.828022 ACCATTAACGCGATCCTCCA 59.172 50.0 15.93 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.367743 TACGAGGGACTTGCGCGT 61.368 61.111 8.43 0.00 45.68 6.01
18 19 3.620300 TACGAGGGACTTGCGCGTG 62.620 63.158 8.43 0.00 45.68 5.34
26 27 4.451150 CTTGCGCGTGGCCTCCTA 62.451 66.667 8.43 0.00 42.61 2.94
27 28 4.752879 TTGCGCGTGGCCTCCTAC 62.753 66.667 8.43 0.00 42.61 3.18
30 31 4.514577 CGCGTGGCCTCCTACTGG 62.515 72.222 3.32 0.00 0.00 4.00
31 32 3.075005 GCGTGGCCTCCTACTGGA 61.075 66.667 3.32 0.00 40.69 3.86
32 33 2.435693 GCGTGGCCTCCTACTGGAT 61.436 63.158 3.32 0.00 42.29 3.41
33 34 1.972660 GCGTGGCCTCCTACTGGATT 61.973 60.000 3.32 0.00 42.29 3.01
34 35 0.179073 CGTGGCCTCCTACTGGATTG 60.179 60.000 3.32 0.00 42.29 2.67
35 36 1.204146 GTGGCCTCCTACTGGATTGA 58.796 55.000 3.32 0.00 42.29 2.57
36 37 1.771255 GTGGCCTCCTACTGGATTGAT 59.229 52.381 3.32 0.00 42.29 2.57
37 38 2.972713 GTGGCCTCCTACTGGATTGATA 59.027 50.000 3.32 0.00 42.29 2.15
38 39 2.972713 TGGCCTCCTACTGGATTGATAC 59.027 50.000 3.32 0.00 42.29 2.24
39 40 2.303311 GGCCTCCTACTGGATTGATACC 59.697 54.545 0.00 0.00 42.29 2.73
40 41 3.243724 GCCTCCTACTGGATTGATACCT 58.756 50.000 0.00 0.00 42.29 3.08
41 42 3.648545 GCCTCCTACTGGATTGATACCTT 59.351 47.826 0.00 0.00 42.29 3.50
42 43 4.503991 GCCTCCTACTGGATTGATACCTTG 60.504 50.000 0.00 0.00 42.29 3.61
43 44 4.040952 CCTCCTACTGGATTGATACCTTGG 59.959 50.000 0.00 0.00 42.29 3.61
44 45 4.631234 TCCTACTGGATTGATACCTTGGT 58.369 43.478 0.00 0.00 37.46 3.67
45 46 5.036916 TCCTACTGGATTGATACCTTGGTT 58.963 41.667 0.00 0.00 37.46 3.67
46 47 5.130477 TCCTACTGGATTGATACCTTGGTTC 59.870 44.000 0.00 0.00 37.46 3.62
47 48 5.131142 CCTACTGGATTGATACCTTGGTTCT 59.869 44.000 0.00 0.00 34.57 3.01
48 49 5.104259 ACTGGATTGATACCTTGGTTCTC 57.896 43.478 0.00 0.00 0.00 2.87
49 50 4.536090 ACTGGATTGATACCTTGGTTCTCA 59.464 41.667 0.00 0.00 0.00 3.27
50 51 5.014123 ACTGGATTGATACCTTGGTTCTCAA 59.986 40.000 15.14 15.14 0.00 3.02
51 52 5.886609 TGGATTGATACCTTGGTTCTCAAA 58.113 37.500 16.13 3.96 34.56 2.69
52 53 6.310941 TGGATTGATACCTTGGTTCTCAAAA 58.689 36.000 16.13 7.35 34.56 2.44
53 54 6.780031 TGGATTGATACCTTGGTTCTCAAAAA 59.220 34.615 16.13 7.12 34.56 1.94
54 55 7.090808 GGATTGATACCTTGGTTCTCAAAAAC 58.909 38.462 16.13 12.11 34.56 2.43
55 56 7.039714 GGATTGATACCTTGGTTCTCAAAAACT 60.040 37.037 16.13 5.53 34.56 2.66
56 57 6.633500 TGATACCTTGGTTCTCAAAAACTG 57.367 37.500 0.00 0.00 34.56 3.16
57 58 6.361433 TGATACCTTGGTTCTCAAAAACTGA 58.639 36.000 0.00 0.00 34.56 3.41
72 73 7.799784 TCAAAAACTGAGGTAAATACTTACGC 58.200 34.615 0.00 0.00 38.69 4.42
73 74 7.658575 TCAAAAACTGAGGTAAATACTTACGCT 59.341 33.333 0.00 0.00 38.69 5.07
74 75 8.928733 CAAAAACTGAGGTAAATACTTACGCTA 58.071 33.333 0.00 0.00 38.69 4.26
75 76 8.471361 AAAACTGAGGTAAATACTTACGCTAC 57.529 34.615 0.00 0.00 38.69 3.58
76 77 7.401955 AACTGAGGTAAATACTTACGCTACT 57.598 36.000 0.00 0.00 38.69 2.57
77 78 7.025485 ACTGAGGTAAATACTTACGCTACTC 57.975 40.000 0.00 0.00 38.69 2.59
78 79 6.827762 ACTGAGGTAAATACTTACGCTACTCT 59.172 38.462 0.00 0.00 38.69 3.24
79 80 7.024340 TGAGGTAAATACTTACGCTACTCTG 57.976 40.000 0.00 0.00 38.69 3.35
80 81 5.829829 AGGTAAATACTTACGCTACTCTGC 58.170 41.667 0.00 0.00 38.69 4.26
81 82 5.593502 AGGTAAATACTTACGCTACTCTGCT 59.406 40.000 0.00 0.00 38.69 4.24
82 83 5.686397 GGTAAATACTTACGCTACTCTGCTG 59.314 44.000 0.00 0.00 38.69 4.41
83 84 2.846039 TACTTACGCTACTCTGCTGC 57.154 50.000 0.00 0.00 0.00 5.25
84 85 0.888619 ACTTACGCTACTCTGCTGCA 59.111 50.000 0.88 0.88 0.00 4.41
85 86 1.478510 ACTTACGCTACTCTGCTGCAT 59.521 47.619 1.31 0.00 0.00 3.96
86 87 2.123342 CTTACGCTACTCTGCTGCATC 58.877 52.381 1.31 0.00 0.00 3.91
87 88 1.102978 TACGCTACTCTGCTGCATCA 58.897 50.000 1.31 0.00 0.00 3.07
88 89 0.463204 ACGCTACTCTGCTGCATCAT 59.537 50.000 1.31 0.00 0.00 2.45
89 90 1.138337 CGCTACTCTGCTGCATCATC 58.862 55.000 1.31 0.00 0.00 2.92
90 91 1.510776 GCTACTCTGCTGCATCATCC 58.489 55.000 1.31 0.00 0.00 3.51
91 92 1.877258 GCTACTCTGCTGCATCATCCC 60.877 57.143 1.31 0.00 0.00 3.85
92 93 1.693062 CTACTCTGCTGCATCATCCCT 59.307 52.381 1.31 0.00 0.00 4.20
93 94 0.917533 ACTCTGCTGCATCATCCCTT 59.082 50.000 1.31 0.00 0.00 3.95
94 95 1.134159 ACTCTGCTGCATCATCCCTTC 60.134 52.381 1.31 0.00 0.00 3.46
95 96 0.182061 TCTGCTGCATCATCCCTTCC 59.818 55.000 1.31 0.00 0.00 3.46
96 97 0.183014 CTGCTGCATCATCCCTTCCT 59.817 55.000 1.31 0.00 0.00 3.36
97 98 0.182061 TGCTGCATCATCCCTTCCTC 59.818 55.000 0.00 0.00 0.00 3.71
98 99 0.473326 GCTGCATCATCCCTTCCTCT 59.527 55.000 0.00 0.00 0.00 3.69
99 100 1.133853 GCTGCATCATCCCTTCCTCTT 60.134 52.381 0.00 0.00 0.00 2.85
100 101 2.848691 CTGCATCATCCCTTCCTCTTC 58.151 52.381 0.00 0.00 0.00 2.87
101 102 1.139654 TGCATCATCCCTTCCTCTTCG 59.860 52.381 0.00 0.00 0.00 3.79
102 103 1.542108 GCATCATCCCTTCCTCTTCGG 60.542 57.143 0.00 0.00 0.00 4.30
103 104 1.071385 CATCATCCCTTCCTCTTCGGG 59.929 57.143 0.00 0.00 39.41 5.14
104 105 0.691078 TCATCCCTTCCTCTTCGGGG 60.691 60.000 0.00 0.00 38.55 5.73
105 106 3.197485 TCCCTTCCTCTTCGGGGA 58.803 61.111 0.00 0.00 44.76 4.81
106 107 1.472460 TCCCTTCCTCTTCGGGGAA 59.528 57.895 0.00 0.00 44.10 3.97
107 108 0.178885 TCCCTTCCTCTTCGGGGAAA 60.179 55.000 0.00 0.00 44.10 3.13
108 109 0.696501 CCCTTCCTCTTCGGGGAAAA 59.303 55.000 0.00 0.00 41.58 2.29
109 110 1.613520 CCCTTCCTCTTCGGGGAAAAC 60.614 57.143 0.00 0.00 41.58 2.43
110 111 1.613520 CCTTCCTCTTCGGGGAAAACC 60.614 57.143 0.00 0.00 41.58 3.27
111 112 1.073284 CTTCCTCTTCGGGGAAAACCA 59.927 52.381 0.00 0.00 41.58 3.67
112 113 1.142060 TCCTCTTCGGGGAAAACCAA 58.858 50.000 0.00 0.00 42.91 3.67
113 114 1.202842 TCCTCTTCGGGGAAAACCAAC 60.203 52.381 0.00 0.00 42.91 3.77
114 115 0.872388 CTCTTCGGGGAAAACCAACG 59.128 55.000 0.00 0.00 42.91 4.10
115 116 1.167781 TCTTCGGGGAAAACCAACGC 61.168 55.000 0.00 0.00 42.91 4.84
116 117 1.448922 CTTCGGGGAAAACCAACGCA 61.449 55.000 0.00 0.00 42.91 5.24
117 118 1.035932 TTCGGGGAAAACCAACGCAA 61.036 50.000 0.00 0.00 42.91 4.85
118 119 1.035932 TCGGGGAAAACCAACGCAAA 61.036 50.000 0.00 0.00 42.91 3.68
119 120 0.872451 CGGGGAAAACCAACGCAAAC 60.872 55.000 0.00 0.00 42.91 2.93
120 121 0.462375 GGGGAAAACCAACGCAAACT 59.538 50.000 0.00 0.00 42.91 2.66
121 122 1.537348 GGGGAAAACCAACGCAAACTC 60.537 52.381 0.00 0.00 42.91 3.01
122 123 1.135333 GGGAAAACCAACGCAAACTCA 59.865 47.619 0.00 0.00 39.85 3.41
123 124 2.417515 GGGAAAACCAACGCAAACTCAA 60.418 45.455 0.00 0.00 39.85 3.02
124 125 2.857748 GGAAAACCAACGCAAACTCAAG 59.142 45.455 0.00 0.00 0.00 3.02
125 126 3.428316 GGAAAACCAACGCAAACTCAAGA 60.428 43.478 0.00 0.00 0.00 3.02
126 127 2.844122 AACCAACGCAAACTCAAGAC 57.156 45.000 0.00 0.00 0.00 3.01
127 128 0.655733 ACCAACGCAAACTCAAGACG 59.344 50.000 0.00 0.00 0.00 4.18
128 129 0.655733 CCAACGCAAACTCAAGACGT 59.344 50.000 0.00 0.00 38.88 4.34
129 130 1.862201 CCAACGCAAACTCAAGACGTA 59.138 47.619 0.00 0.00 35.64 3.57
130 131 2.096909 CCAACGCAAACTCAAGACGTAG 60.097 50.000 0.00 0.00 35.64 3.51
131 132 1.137513 ACGCAAACTCAAGACGTAGC 58.862 50.000 0.00 0.00 34.79 3.58
132 133 1.136690 CGCAAACTCAAGACGTAGCA 58.863 50.000 0.00 0.00 0.00 3.49
141 142 1.802337 AAGACGTAGCACTGACCGCA 61.802 55.000 0.00 0.00 0.00 5.69
145 146 0.796312 CGTAGCACTGACCGCAAATT 59.204 50.000 0.00 0.00 0.00 1.82
248 249 2.423577 GTACCTTGATGCGGAAACTGT 58.576 47.619 0.00 0.00 0.00 3.55
405 406 0.704076 AGCCTTGCCCACCTTAATGA 59.296 50.000 0.00 0.00 0.00 2.57
489 490 0.812811 GCTCCTCGCTGATGCATCAA 60.813 55.000 28.39 14.38 39.64 2.57
631 1404 0.686769 CCTGCCCTAGGGTTACTCGT 60.687 60.000 28.96 0.00 43.33 4.18
788 1570 1.981259 ACCCTGCACCCCTATAAACT 58.019 50.000 0.00 0.00 0.00 2.66
1231 2021 0.602106 CTGGGCAGCTACATCATCGG 60.602 60.000 0.00 0.00 0.00 4.18
1632 2431 3.010144 GCCATGGGGAGTGGATGT 58.990 61.111 15.13 0.00 39.12 3.06
1905 2704 1.783071 GGAGTCCTCCTAGTCAAGGG 58.217 60.000 0.41 0.00 46.55 3.95
1920 2719 2.091055 TCAAGGGGATCGGAGAGAAGAT 60.091 50.000 0.00 0.00 43.63 2.40
1952 2754 2.352422 GACACATGAGGGCAGGCA 59.648 61.111 0.00 0.00 0.00 4.75
1995 2797 2.125512 GTGACGAGGGCAGCGATT 60.126 61.111 5.25 0.00 0.00 3.34
2297 3101 1.778383 AAAAGGCAGGTGGGAGGGA 60.778 57.895 0.00 0.00 0.00 4.20
2470 3278 2.112297 GTTTGTCCGGCCAGTGGA 59.888 61.111 15.20 0.00 0.00 4.02
2528 3342 1.916181 GAAATTGGGAGAGGGAGGACA 59.084 52.381 0.00 0.00 0.00 4.02
2565 3379 6.096695 CGAAAATGGTGGGACGAAAATAAAT 58.903 36.000 0.00 0.00 0.00 1.40
2596 3410 5.105877 CGGAGACTACCAACTGAGACATTAA 60.106 44.000 0.00 0.00 0.00 1.40
2608 3422 7.038154 ACTGAGACATTAAGAGTAGAGATGC 57.962 40.000 0.00 0.00 0.00 3.91
2611 3425 6.766467 TGAGACATTAAGAGTAGAGATGCGTA 59.234 38.462 0.00 0.00 0.00 4.42
2612 3426 7.445707 TGAGACATTAAGAGTAGAGATGCGTAT 59.554 37.037 0.00 0.00 0.00 3.06
2613 3427 8.850007 AGACATTAAGAGTAGAGATGCGTATA 57.150 34.615 0.00 0.00 0.00 1.47
2614 3428 8.941977 AGACATTAAGAGTAGAGATGCGTATAG 58.058 37.037 0.00 0.00 0.00 1.31
2615 3429 8.624367 ACATTAAGAGTAGAGATGCGTATAGT 57.376 34.615 0.00 0.00 0.00 2.12
2616 3430 8.508062 ACATTAAGAGTAGAGATGCGTATAGTG 58.492 37.037 0.00 0.00 0.00 2.74
2617 3431 8.508062 CATTAAGAGTAGAGATGCGTATAGTGT 58.492 37.037 0.00 0.00 0.00 3.55
2618 3432 5.933187 AGAGTAGAGATGCGTATAGTGTG 57.067 43.478 0.00 0.00 0.00 3.82
2619 3433 4.214545 AGAGTAGAGATGCGTATAGTGTGC 59.785 45.833 0.00 0.00 0.00 4.57
2620 3434 4.138290 AGTAGAGATGCGTATAGTGTGCT 58.862 43.478 0.00 0.00 0.00 4.40
2621 3435 3.361794 AGAGATGCGTATAGTGTGCTG 57.638 47.619 0.00 0.00 0.00 4.41
2622 3436 2.952310 AGAGATGCGTATAGTGTGCTGA 59.048 45.455 0.00 0.00 0.00 4.26
2623 3437 3.004210 AGAGATGCGTATAGTGTGCTGAG 59.996 47.826 0.00 0.00 0.00 3.35
2624 3438 2.690497 AGATGCGTATAGTGTGCTGAGT 59.310 45.455 0.00 0.00 0.00 3.41
2625 3439 3.131223 AGATGCGTATAGTGTGCTGAGTT 59.869 43.478 0.00 0.00 0.00 3.01
2626 3440 3.313012 TGCGTATAGTGTGCTGAGTTT 57.687 42.857 0.00 0.00 0.00 2.66
2627 3441 3.250744 TGCGTATAGTGTGCTGAGTTTC 58.749 45.455 0.00 0.00 0.00 2.78
2628 3442 2.603560 GCGTATAGTGTGCTGAGTTTCC 59.396 50.000 0.00 0.00 0.00 3.13
2629 3443 2.852413 CGTATAGTGTGCTGAGTTTCCG 59.148 50.000 0.00 0.00 0.00 4.30
2630 3444 3.672511 CGTATAGTGTGCTGAGTTTCCGT 60.673 47.826 0.00 0.00 0.00 4.69
2631 3445 2.902705 TAGTGTGCTGAGTTTCCGTT 57.097 45.000 0.00 0.00 0.00 4.44
2632 3446 1.299541 AGTGTGCTGAGTTTCCGTTG 58.700 50.000 0.00 0.00 0.00 4.10
2633 3447 0.307760 GTGTGCTGAGTTTCCGTTGG 59.692 55.000 0.00 0.00 0.00 3.77
2634 3448 0.107410 TGTGCTGAGTTTCCGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
2635 3449 1.021968 GTGCTGAGTTTCCGTTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
2636 3450 1.002792 GTGCTGAGTTTCCGTTGGTTC 60.003 52.381 0.00 0.00 0.00 3.62
2637 3451 1.134220 TGCTGAGTTTCCGTTGGTTCT 60.134 47.619 0.00 0.00 0.00 3.01
2638 3452 1.264288 GCTGAGTTTCCGTTGGTTCTG 59.736 52.381 0.00 0.00 0.00 3.02
2639 3453 2.561569 CTGAGTTTCCGTTGGTTCTGT 58.438 47.619 0.00 0.00 0.00 3.41
2640 3454 2.544267 CTGAGTTTCCGTTGGTTCTGTC 59.456 50.000 0.00 0.00 0.00 3.51
2641 3455 2.093394 TGAGTTTCCGTTGGTTCTGTCA 60.093 45.455 0.00 0.00 0.00 3.58
2642 3456 2.285977 AGTTTCCGTTGGTTCTGTCAC 58.714 47.619 0.00 0.00 0.00 3.67
2643 3457 1.004292 GTTTCCGTTGGTTCTGTCACG 60.004 52.381 0.00 0.00 0.00 4.35
2644 3458 1.155424 TTCCGTTGGTTCTGTCACGC 61.155 55.000 0.00 0.00 0.00 5.34
2645 3459 2.604174 CCGTTGGTTCTGTCACGCC 61.604 63.158 0.00 0.00 0.00 5.68
2646 3460 1.885388 CGTTGGTTCTGTCACGCCA 60.885 57.895 0.00 0.00 0.00 5.69
2647 3461 1.227999 CGTTGGTTCTGTCACGCCAT 61.228 55.000 0.00 0.00 0.00 4.40
2648 3462 0.517316 GTTGGTTCTGTCACGCCATC 59.483 55.000 0.00 0.00 0.00 3.51
2649 3463 0.605319 TTGGTTCTGTCACGCCATCC 60.605 55.000 0.00 0.00 0.00 3.51
2650 3464 2.100631 GGTTCTGTCACGCCATCCG 61.101 63.158 0.00 0.00 44.21 4.18
2651 3465 2.434185 TTCTGTCACGCCATCCGC 60.434 61.111 0.00 0.00 41.76 5.54
2652 3466 3.233259 TTCTGTCACGCCATCCGCA 62.233 57.895 0.00 0.00 41.76 5.69
2653 3467 3.490759 CTGTCACGCCATCCGCAC 61.491 66.667 0.00 0.00 41.76 5.34
2656 3470 4.094646 TCACGCCATCCGCACCAT 62.095 61.111 0.00 0.00 41.76 3.55
2657 3471 2.203001 CACGCCATCCGCACCATA 60.203 61.111 0.00 0.00 41.76 2.74
2658 3472 2.203015 ACGCCATCCGCACCATAC 60.203 61.111 0.00 0.00 41.76 2.39
2659 3473 3.337889 CGCCATCCGCACCATACG 61.338 66.667 0.00 0.00 37.30 3.06
2660 3474 2.203015 GCCATCCGCACCATACGT 60.203 61.111 0.00 0.00 37.47 3.57
2661 3475 1.068417 GCCATCCGCACCATACGTA 59.932 57.895 0.00 0.00 37.47 3.57
2662 3476 1.219522 GCCATCCGCACCATACGTAC 61.220 60.000 0.00 0.00 37.47 3.67
2663 3477 0.103390 CCATCCGCACCATACGTACA 59.897 55.000 0.00 0.00 0.00 2.90
2664 3478 1.270094 CCATCCGCACCATACGTACAT 60.270 52.381 0.00 0.00 0.00 2.29
2665 3479 2.029739 CCATCCGCACCATACGTACATA 60.030 50.000 0.00 0.00 0.00 2.29
2666 3480 3.368013 CCATCCGCACCATACGTACATAT 60.368 47.826 0.00 0.00 0.00 1.78
2667 3481 3.291809 TCCGCACCATACGTACATATG 57.708 47.619 0.00 1.90 33.10 1.78
2668 3482 1.724623 CCGCACCATACGTACATATGC 59.275 52.381 3.38 5.18 32.12 3.14
2669 3483 1.724623 CGCACCATACGTACATATGCC 59.275 52.381 3.38 0.00 32.12 4.40
2670 3484 2.761559 GCACCATACGTACATATGCCA 58.238 47.619 3.38 0.00 32.12 4.92
2671 3485 2.736721 GCACCATACGTACATATGCCAG 59.263 50.000 3.38 0.00 32.12 4.85
2672 3486 2.736721 CACCATACGTACATATGCCAGC 59.263 50.000 3.38 0.00 32.12 4.85
2673 3487 2.367241 ACCATACGTACATATGCCAGCA 59.633 45.455 3.38 0.00 32.12 4.41
2674 3488 2.995939 CCATACGTACATATGCCAGCAG 59.004 50.000 3.38 0.00 32.12 4.24
2675 3489 2.148916 TACGTACATATGCCAGCAGC 57.851 50.000 1.58 0.00 44.14 5.25
2676 3490 0.532862 ACGTACATATGCCAGCAGCC 60.533 55.000 1.58 0.00 42.71 4.85
2677 3491 1.230635 CGTACATATGCCAGCAGCCC 61.231 60.000 1.58 0.00 42.71 5.19
2678 3492 0.109342 GTACATATGCCAGCAGCCCT 59.891 55.000 1.58 0.00 42.71 5.19
2679 3493 0.109153 TACATATGCCAGCAGCCCTG 59.891 55.000 1.58 0.00 42.71 4.45
2680 3494 1.152819 CATATGCCAGCAGCCCTGT 60.153 57.895 0.00 0.00 42.71 4.00
2681 3495 0.754217 CATATGCCAGCAGCCCTGTT 60.754 55.000 0.00 0.00 42.71 3.16
2682 3496 0.466922 ATATGCCAGCAGCCCTGTTC 60.467 55.000 0.00 0.00 42.71 3.18
2683 3497 2.556840 TATGCCAGCAGCCCTGTTCC 62.557 60.000 0.00 0.00 42.71 3.62
2684 3498 4.357279 GCCAGCAGCCCTGTTCCT 62.357 66.667 0.00 0.00 40.06 3.36
2685 3499 2.045536 CCAGCAGCCCTGTTCCTC 60.046 66.667 0.00 0.00 40.06 3.71
2686 3500 2.600729 CCAGCAGCCCTGTTCCTCT 61.601 63.158 0.00 0.00 40.06 3.69
2687 3501 1.078567 CAGCAGCCCTGTTCCTCTC 60.079 63.158 0.00 0.00 36.79 3.20
2688 3502 2.270527 GCAGCCCTGTTCCTCTCC 59.729 66.667 0.00 0.00 0.00 3.71
2689 3503 2.297129 GCAGCCCTGTTCCTCTCCT 61.297 63.158 0.00 0.00 0.00 3.69
2690 3504 1.904032 CAGCCCTGTTCCTCTCCTC 59.096 63.158 0.00 0.00 0.00 3.71
2691 3505 1.306568 AGCCCTGTTCCTCTCCTCC 60.307 63.158 0.00 0.00 0.00 4.30
2692 3506 1.306568 GCCCTGTTCCTCTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
2693 3507 1.334384 GCCCTGTTCCTCTCCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
2694 3508 0.338120 CCCTGTTCCTCTCCTCCTCT 59.662 60.000 0.00 0.00 0.00 3.69
2695 3509 1.687996 CCCTGTTCCTCTCCTCCTCTC 60.688 61.905 0.00 0.00 0.00 3.20
2696 3510 1.687996 CCTGTTCCTCTCCTCCTCTCC 60.688 61.905 0.00 0.00 0.00 3.71
2697 3511 1.006519 CTGTTCCTCTCCTCCTCTCCA 59.993 57.143 0.00 0.00 0.00 3.86
2698 3512 1.433199 TGTTCCTCTCCTCCTCTCCAA 59.567 52.381 0.00 0.00 0.00 3.53
2699 3513 2.045047 TGTTCCTCTCCTCCTCTCCAAT 59.955 50.000 0.00 0.00 0.00 3.16
2700 3514 2.433970 GTTCCTCTCCTCCTCTCCAATG 59.566 54.545 0.00 0.00 0.00 2.82
2701 3515 0.758123 CCTCTCCTCCTCTCCAATGC 59.242 60.000 0.00 0.00 0.00 3.56
2702 3516 0.388659 CTCTCCTCCTCTCCAATGCG 59.611 60.000 0.00 0.00 0.00 4.73
2703 3517 0.324738 TCTCCTCCTCTCCAATGCGT 60.325 55.000 0.00 0.00 0.00 5.24
2704 3518 1.063942 TCTCCTCCTCTCCAATGCGTA 60.064 52.381 0.00 0.00 0.00 4.42
2705 3519 1.067821 CTCCTCCTCTCCAATGCGTAC 59.932 57.143 0.00 0.00 0.00 3.67
2706 3520 0.249073 CCTCCTCTCCAATGCGTACG 60.249 60.000 11.84 11.84 0.00 3.67
2707 3521 0.456221 CTCCTCTCCAATGCGTACGT 59.544 55.000 17.90 0.00 0.00 3.57
2708 3522 1.674441 CTCCTCTCCAATGCGTACGTA 59.326 52.381 17.90 13.65 0.00 3.57
2709 3523 1.402968 TCCTCTCCAATGCGTACGTAC 59.597 52.381 17.90 15.90 0.00 3.67
2710 3524 1.535437 CCTCTCCAATGCGTACGTACC 60.535 57.143 19.67 12.75 0.00 3.34
2711 3525 1.133598 CTCTCCAATGCGTACGTACCA 59.866 52.381 19.67 17.57 0.00 3.25
2712 3526 1.133598 TCTCCAATGCGTACGTACCAG 59.866 52.381 19.67 8.11 0.00 4.00
2713 3527 0.458889 TCCAATGCGTACGTACCAGC 60.459 55.000 19.67 17.62 0.00 4.85
2714 3528 0.459585 CCAATGCGTACGTACCAGCT 60.460 55.000 19.67 7.67 0.00 4.24
2715 3529 0.921347 CAATGCGTACGTACCAGCTC 59.079 55.000 19.67 5.13 0.00 4.09
2716 3530 0.179119 AATGCGTACGTACCAGCTCC 60.179 55.000 19.67 0.00 0.00 4.70
2717 3531 1.317431 ATGCGTACGTACCAGCTCCA 61.317 55.000 19.67 2.93 0.00 3.86
2718 3532 1.515736 GCGTACGTACCAGCTCCAC 60.516 63.158 19.67 0.00 0.00 4.02
2719 3533 1.138247 CGTACGTACCAGCTCCACC 59.862 63.158 19.67 0.00 0.00 4.61
2720 3534 1.588824 CGTACGTACCAGCTCCACCA 61.589 60.000 19.67 0.00 0.00 4.17
2721 3535 0.822164 GTACGTACCAGCTCCACCAT 59.178 55.000 15.00 0.00 0.00 3.55
2722 3536 1.206371 GTACGTACCAGCTCCACCATT 59.794 52.381 15.00 0.00 0.00 3.16
2723 3537 0.690762 ACGTACCAGCTCCACCATTT 59.309 50.000 0.00 0.00 0.00 2.32
2724 3538 1.338769 ACGTACCAGCTCCACCATTTC 60.339 52.381 0.00 0.00 0.00 2.17
2725 3539 1.751437 GTACCAGCTCCACCATTTCC 58.249 55.000 0.00 0.00 0.00 3.13
2726 3540 1.004277 GTACCAGCTCCACCATTTCCA 59.996 52.381 0.00 0.00 0.00 3.53
2727 3541 0.482446 ACCAGCTCCACCATTTCCAA 59.518 50.000 0.00 0.00 0.00 3.53
2728 3542 0.890683 CCAGCTCCACCATTTCCAAC 59.109 55.000 0.00 0.00 0.00 3.77
2729 3543 1.619654 CAGCTCCACCATTTCCAACA 58.380 50.000 0.00 0.00 0.00 3.33
2730 3544 2.173519 CAGCTCCACCATTTCCAACAT 58.826 47.619 0.00 0.00 0.00 2.71
2731 3545 2.094390 CAGCTCCACCATTTCCAACATG 60.094 50.000 0.00 0.00 0.00 3.21
2732 3546 1.404583 GCTCCACCATTTCCAACATGC 60.405 52.381 0.00 0.00 0.00 4.06
2733 3547 1.894466 CTCCACCATTTCCAACATGCA 59.106 47.619 0.00 0.00 0.00 3.96
2734 3548 2.498481 CTCCACCATTTCCAACATGCAT 59.502 45.455 0.00 0.00 0.00 3.96
2735 3549 2.234168 TCCACCATTTCCAACATGCATG 59.766 45.455 25.09 25.09 0.00 4.06
2736 3550 2.623535 CACCATTTCCAACATGCATGG 58.376 47.619 29.41 14.99 40.37 3.66
2737 3551 1.065998 ACCATTTCCAACATGCATGGC 60.066 47.619 29.41 0.00 38.41 4.40
2738 3552 1.066071 CCATTTCCAACATGCATGGCA 60.066 47.619 29.41 8.22 44.86 4.92
2739 3553 2.004017 CATTTCCAACATGCATGGCAC 58.996 47.619 29.41 0.00 43.04 5.01
2740 3554 1.046204 TTTCCAACATGCATGGCACA 58.954 45.000 29.41 8.94 43.04 4.57
2751 3565 3.798511 TGGCACACAACCCACCGA 61.799 61.111 0.00 0.00 0.00 4.69
2752 3566 2.517402 GGCACACAACCCACCGAA 60.517 61.111 0.00 0.00 0.00 4.30
2753 3567 2.122167 GGCACACAACCCACCGAAA 61.122 57.895 0.00 0.00 0.00 3.46
2754 3568 1.668101 GGCACACAACCCACCGAAAA 61.668 55.000 0.00 0.00 0.00 2.29
2755 3569 0.526739 GCACACAACCCACCGAAAAC 60.527 55.000 0.00 0.00 0.00 2.43
2756 3570 0.101579 CACACAACCCACCGAAAACC 59.898 55.000 0.00 0.00 0.00 3.27
2757 3571 1.038681 ACACAACCCACCGAAAACCC 61.039 55.000 0.00 0.00 0.00 4.11
2758 3572 1.038130 CACAACCCACCGAAAACCCA 61.038 55.000 0.00 0.00 0.00 4.51
2759 3573 0.753848 ACAACCCACCGAAAACCCAG 60.754 55.000 0.00 0.00 0.00 4.45
2760 3574 1.830847 AACCCACCGAAAACCCAGC 60.831 57.895 0.00 0.00 0.00 4.85
2761 3575 2.203422 CCCACCGAAAACCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
2762 3576 2.561037 CCCACCGAAAACCCAGCAC 61.561 63.158 0.00 0.00 0.00 4.40
2763 3577 1.826054 CCACCGAAAACCCAGCACA 60.826 57.895 0.00 0.00 0.00 4.57
2764 3578 1.358759 CACCGAAAACCCAGCACAC 59.641 57.895 0.00 0.00 0.00 3.82
2765 3579 1.077357 ACCGAAAACCCAGCACACA 60.077 52.632 0.00 0.00 0.00 3.72
2766 3580 0.467290 ACCGAAAACCCAGCACACAT 60.467 50.000 0.00 0.00 0.00 3.21
2767 3581 0.039256 CCGAAAACCCAGCACACATG 60.039 55.000 0.00 0.00 0.00 3.21
2768 3582 0.039256 CGAAAACCCAGCACACATGG 60.039 55.000 0.00 0.00 37.58 3.66
2769 3583 1.327303 GAAAACCCAGCACACATGGA 58.673 50.000 0.00 0.00 40.51 3.41
2770 3584 1.895131 GAAAACCCAGCACACATGGAT 59.105 47.619 0.00 0.00 40.51 3.41
2771 3585 1.259609 AAACCCAGCACACATGGATG 58.740 50.000 0.00 0.00 40.51 3.51
2772 3586 0.612732 AACCCAGCACACATGGATGG 60.613 55.000 0.00 0.00 40.51 3.51
2773 3587 1.303948 CCCAGCACACATGGATGGA 59.696 57.895 6.33 0.00 40.51 3.41
2774 3588 0.323633 CCCAGCACACATGGATGGAA 60.324 55.000 6.33 0.00 40.51 3.53
2775 3589 1.100510 CCAGCACACATGGATGGAAG 58.899 55.000 0.00 0.00 40.51 3.46
2776 3590 1.615116 CCAGCACACATGGATGGAAGT 60.615 52.381 0.00 0.00 40.51 3.01
2777 3591 1.741706 CAGCACACATGGATGGAAGTC 59.258 52.381 0.00 0.00 0.00 3.01
2778 3592 1.632409 AGCACACATGGATGGAAGTCT 59.368 47.619 0.00 0.00 0.00 3.24
2779 3593 2.012673 GCACACATGGATGGAAGTCTC 58.987 52.381 0.00 0.00 0.00 3.36
2780 3594 2.355513 GCACACATGGATGGAAGTCTCT 60.356 50.000 0.00 0.00 0.00 3.10
2781 3595 3.268330 CACACATGGATGGAAGTCTCTG 58.732 50.000 0.00 0.00 0.00 3.35
2782 3596 2.286872 CACATGGATGGAAGTCTCTGC 58.713 52.381 0.00 0.00 0.00 4.26
2783 3597 2.093075 CACATGGATGGAAGTCTCTGCT 60.093 50.000 0.00 0.00 0.00 4.24
2784 3598 2.093075 ACATGGATGGAAGTCTCTGCTG 60.093 50.000 0.00 0.00 0.00 4.41
2785 3599 1.649321 TGGATGGAAGTCTCTGCTGT 58.351 50.000 0.00 0.00 0.00 4.40
2786 3600 2.820178 TGGATGGAAGTCTCTGCTGTA 58.180 47.619 0.00 0.00 0.00 2.74
2787 3601 2.497675 TGGATGGAAGTCTCTGCTGTAC 59.502 50.000 0.00 0.00 0.00 2.90
2788 3602 2.480416 GGATGGAAGTCTCTGCTGTACG 60.480 54.545 0.00 0.00 0.00 3.67
2789 3603 1.617322 TGGAAGTCTCTGCTGTACGT 58.383 50.000 0.00 0.00 0.00 3.57
2790 3604 2.786777 TGGAAGTCTCTGCTGTACGTA 58.213 47.619 0.00 0.00 0.00 3.57
2791 3605 2.486982 TGGAAGTCTCTGCTGTACGTAC 59.513 50.000 18.90 18.90 0.00 3.67
2792 3606 2.475852 GGAAGTCTCTGCTGTACGTACG 60.476 54.545 20.18 15.01 0.00 3.67
2793 3607 1.805869 AGTCTCTGCTGTACGTACGT 58.194 50.000 25.98 25.98 0.00 3.57
2794 3608 2.964740 AGTCTCTGCTGTACGTACGTA 58.035 47.619 23.60 23.60 0.00 3.57
2804 3618 3.729526 GTACGTACGTACTGCTTGAGA 57.270 47.619 38.40 12.91 45.30 3.27
2805 3619 4.270178 GTACGTACGTACTGCTTGAGAT 57.730 45.455 38.40 10.76 45.30 2.75
2806 3620 3.844577 ACGTACGTACTGCTTGAGATT 57.155 42.857 21.41 0.00 0.00 2.40
2807 3621 3.499048 ACGTACGTACTGCTTGAGATTG 58.501 45.455 21.41 5.82 0.00 2.67
2808 3622 3.189910 ACGTACGTACTGCTTGAGATTGA 59.810 43.478 21.41 0.00 0.00 2.57
2809 3623 3.786576 CGTACGTACTGCTTGAGATTGAG 59.213 47.826 22.55 0.00 0.00 3.02
2810 3624 4.436986 CGTACGTACTGCTTGAGATTGAGA 60.437 45.833 22.55 0.00 0.00 3.27
2811 3625 4.103365 ACGTACTGCTTGAGATTGAGAG 57.897 45.455 0.00 0.00 0.00 3.20
2812 3626 2.857152 CGTACTGCTTGAGATTGAGAGC 59.143 50.000 0.00 0.00 35.74 4.09
2813 3627 2.399916 ACTGCTTGAGATTGAGAGCC 57.600 50.000 0.00 0.00 34.30 4.70
2814 3628 1.065564 ACTGCTTGAGATTGAGAGCCC 60.066 52.381 0.00 0.00 34.30 5.19
2815 3629 0.986527 TGCTTGAGATTGAGAGCCCA 59.013 50.000 0.00 0.00 34.30 5.36
2816 3630 1.562942 TGCTTGAGATTGAGAGCCCAT 59.437 47.619 0.00 0.00 34.30 4.00
2817 3631 1.948145 GCTTGAGATTGAGAGCCCATG 59.052 52.381 0.00 0.00 0.00 3.66
2818 3632 2.683152 GCTTGAGATTGAGAGCCCATGT 60.683 50.000 0.00 0.00 0.00 3.21
2819 3633 2.996249 TGAGATTGAGAGCCCATGTC 57.004 50.000 0.00 0.00 0.00 3.06
2820 3634 1.137675 TGAGATTGAGAGCCCATGTCG 59.862 52.381 0.00 0.00 0.00 4.35
2821 3635 0.179062 AGATTGAGAGCCCATGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
2822 3636 1.153086 ATTGAGAGCCCATGTCGCC 60.153 57.895 0.00 0.00 0.00 5.54
2823 3637 1.913951 ATTGAGAGCCCATGTCGCCA 61.914 55.000 0.00 0.00 0.00 5.69
2824 3638 1.913951 TTGAGAGCCCATGTCGCCAT 61.914 55.000 0.00 0.00 0.00 4.40
2825 3639 1.596477 GAGAGCCCATGTCGCCATC 60.596 63.158 0.00 0.00 0.00 3.51
2826 3640 2.190313 GAGCCCATGTCGCCATCA 59.810 61.111 0.00 0.00 0.00 3.07
2827 3641 2.124570 AGCCCATGTCGCCATCAC 60.125 61.111 0.00 0.00 0.00 3.06
2828 3642 3.576356 GCCCATGTCGCCATCACG 61.576 66.667 0.00 0.00 0.00 4.35
2829 3643 2.896854 CCCATGTCGCCATCACGG 60.897 66.667 0.00 0.00 38.11 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.367743 ACGCGCAAGTCCCTCGTA 61.368 61.111 5.73 0.00 41.68 3.43
9 10 4.451150 TAGGAGGCCACGCGCAAG 62.451 66.667 5.73 0.00 40.31 4.01
10 11 4.752879 GTAGGAGGCCACGCGCAA 62.753 66.667 5.73 0.00 40.31 4.85
13 14 4.514577 CCAGTAGGAGGCCACGCG 62.515 72.222 5.01 3.53 36.89 6.01
14 15 3.075005 TCCAGTAGGAGGCCACGC 61.075 66.667 5.01 0.00 39.61 5.34
23 24 5.131142 AGAACCAAGGTATCAATCCAGTAGG 59.869 44.000 0.00 0.00 0.00 3.18
24 25 6.127054 TGAGAACCAAGGTATCAATCCAGTAG 60.127 42.308 4.99 0.00 0.00 2.57
25 26 5.724370 TGAGAACCAAGGTATCAATCCAGTA 59.276 40.000 4.99 0.00 0.00 2.74
26 27 4.536090 TGAGAACCAAGGTATCAATCCAGT 59.464 41.667 4.99 0.00 0.00 4.00
27 28 5.102953 TGAGAACCAAGGTATCAATCCAG 57.897 43.478 4.99 0.00 0.00 3.86
28 29 5.512942 TTGAGAACCAAGGTATCAATCCA 57.487 39.130 13.02 0.00 32.60 3.41
29 30 6.834168 TTTTGAGAACCAAGGTATCAATCC 57.166 37.500 16.11 0.00 35.41 3.01
30 31 7.809806 CAGTTTTTGAGAACCAAGGTATCAATC 59.190 37.037 16.11 11.55 35.41 2.67
31 32 7.505585 TCAGTTTTTGAGAACCAAGGTATCAAT 59.494 33.333 16.11 4.02 35.41 2.57
32 33 6.831353 TCAGTTTTTGAGAACCAAGGTATCAA 59.169 34.615 13.02 13.02 35.94 2.57
33 34 6.361433 TCAGTTTTTGAGAACCAAGGTATCA 58.639 36.000 0.00 0.00 35.94 2.15
34 35 6.877611 TCAGTTTTTGAGAACCAAGGTATC 57.122 37.500 0.00 0.00 35.94 2.24
46 47 7.955864 GCGTAAGTATTTACCTCAGTTTTTGAG 59.044 37.037 2.84 0.00 46.36 3.02
47 48 7.658575 AGCGTAAGTATTTACCTCAGTTTTTGA 59.341 33.333 2.84 0.00 36.60 2.69
48 49 7.803724 AGCGTAAGTATTTACCTCAGTTTTTG 58.196 34.615 2.84 0.00 36.60 2.44
49 50 7.974482 AGCGTAAGTATTTACCTCAGTTTTT 57.026 32.000 2.84 0.00 36.60 1.94
50 51 8.309656 AGTAGCGTAAGTATTTACCTCAGTTTT 58.690 33.333 2.84 0.00 36.60 2.43
51 52 7.834803 AGTAGCGTAAGTATTTACCTCAGTTT 58.165 34.615 2.84 0.00 36.60 2.66
52 53 7.338957 AGAGTAGCGTAAGTATTTACCTCAGTT 59.661 37.037 11.76 0.00 36.60 3.16
53 54 6.827762 AGAGTAGCGTAAGTATTTACCTCAGT 59.172 38.462 11.76 0.00 36.60 3.41
54 55 7.133513 CAGAGTAGCGTAAGTATTTACCTCAG 58.866 42.308 11.76 3.94 36.60 3.35
55 56 6.459298 GCAGAGTAGCGTAAGTATTTACCTCA 60.459 42.308 11.76 0.00 36.60 3.86
56 57 5.914074 GCAGAGTAGCGTAAGTATTTACCTC 59.086 44.000 2.84 4.00 36.60 3.85
57 58 5.593502 AGCAGAGTAGCGTAAGTATTTACCT 59.406 40.000 2.84 4.16 40.15 3.08
58 59 5.686397 CAGCAGAGTAGCGTAAGTATTTACC 59.314 44.000 2.84 0.00 40.15 2.85
59 60 5.173492 GCAGCAGAGTAGCGTAAGTATTTAC 59.827 44.000 0.00 0.00 40.15 2.01
60 61 5.163591 TGCAGCAGAGTAGCGTAAGTATTTA 60.164 40.000 0.00 0.00 40.15 1.40
61 62 4.113354 GCAGCAGAGTAGCGTAAGTATTT 58.887 43.478 0.00 0.00 40.15 1.40
62 63 3.130516 TGCAGCAGAGTAGCGTAAGTATT 59.869 43.478 0.00 0.00 40.15 1.89
63 64 2.688446 TGCAGCAGAGTAGCGTAAGTAT 59.312 45.455 0.00 0.00 40.15 2.12
64 65 2.089201 TGCAGCAGAGTAGCGTAAGTA 58.911 47.619 0.00 0.00 40.15 2.24
65 66 0.888619 TGCAGCAGAGTAGCGTAAGT 59.111 50.000 0.00 0.00 40.15 2.24
66 67 2.123342 GATGCAGCAGAGTAGCGTAAG 58.877 52.381 0.00 0.00 40.15 2.34
67 68 1.476488 TGATGCAGCAGAGTAGCGTAA 59.524 47.619 0.00 0.00 40.15 3.18
68 69 1.102978 TGATGCAGCAGAGTAGCGTA 58.897 50.000 0.00 0.00 40.15 4.42
69 70 0.463204 ATGATGCAGCAGAGTAGCGT 59.537 50.000 11.66 0.00 40.15 5.07
70 71 1.138337 GATGATGCAGCAGAGTAGCG 58.862 55.000 11.66 0.00 40.15 4.26
71 72 1.510776 GGATGATGCAGCAGAGTAGC 58.489 55.000 11.66 0.00 0.00 3.58
72 73 1.693062 AGGGATGATGCAGCAGAGTAG 59.307 52.381 11.66 0.00 0.00 2.57
73 74 1.798626 AGGGATGATGCAGCAGAGTA 58.201 50.000 11.66 0.00 0.00 2.59
74 75 0.917533 AAGGGATGATGCAGCAGAGT 59.082 50.000 11.66 0.00 0.00 3.24
75 76 1.595466 GAAGGGATGATGCAGCAGAG 58.405 55.000 11.66 0.00 0.00 3.35
76 77 0.182061 GGAAGGGATGATGCAGCAGA 59.818 55.000 11.66 0.00 0.00 4.26
77 78 0.183014 AGGAAGGGATGATGCAGCAG 59.817 55.000 11.66 0.00 0.00 4.24
78 79 0.182061 GAGGAAGGGATGATGCAGCA 59.818 55.000 7.31 7.31 0.00 4.41
79 80 0.473326 AGAGGAAGGGATGATGCAGC 59.527 55.000 0.00 0.00 0.00 5.25
80 81 2.806019 CGAAGAGGAAGGGATGATGCAG 60.806 54.545 0.00 0.00 0.00 4.41
81 82 1.139654 CGAAGAGGAAGGGATGATGCA 59.860 52.381 0.00 0.00 0.00 3.96
82 83 1.542108 CCGAAGAGGAAGGGATGATGC 60.542 57.143 0.00 0.00 45.00 3.91
83 84 2.540265 CCGAAGAGGAAGGGATGATG 57.460 55.000 0.00 0.00 45.00 3.07
88 89 1.472460 TTCCCCGAAGAGGAAGGGA 59.528 57.895 0.60 0.00 40.31 4.20
89 90 4.147135 TTCCCCGAAGAGGAAGGG 57.853 61.111 0.00 0.00 40.31 3.95
92 93 1.142060 TGGTTTTCCCCGAAGAGGAA 58.858 50.000 0.00 0.00 44.69 3.36
93 94 1.142060 TTGGTTTTCCCCGAAGAGGA 58.858 50.000 0.00 0.00 39.25 3.71
94 95 1.244816 GTTGGTTTTCCCCGAAGAGG 58.755 55.000 0.00 0.00 39.73 3.69
95 96 0.872388 CGTTGGTTTTCCCCGAAGAG 59.128 55.000 0.00 0.00 39.73 2.85
96 97 1.167781 GCGTTGGTTTTCCCCGAAGA 61.168 55.000 0.00 0.00 39.73 2.87
97 98 1.284715 GCGTTGGTTTTCCCCGAAG 59.715 57.895 0.00 0.00 39.73 3.79
98 99 1.035932 TTGCGTTGGTTTTCCCCGAA 61.036 50.000 0.00 0.00 39.73 4.30
99 100 1.035932 TTTGCGTTGGTTTTCCCCGA 61.036 50.000 0.00 0.00 39.73 5.14
100 101 0.872451 GTTTGCGTTGGTTTTCCCCG 60.872 55.000 0.00 0.00 39.73 5.73
101 102 0.462375 AGTTTGCGTTGGTTTTCCCC 59.538 50.000 0.00 0.00 39.73 4.81
102 103 1.135333 TGAGTTTGCGTTGGTTTTCCC 59.865 47.619 0.00 0.00 39.73 3.97
103 104 2.570442 TGAGTTTGCGTTGGTTTTCC 57.430 45.000 0.00 0.00 41.14 3.13
104 105 3.546271 GTCTTGAGTTTGCGTTGGTTTTC 59.454 43.478 0.00 0.00 0.00 2.29
105 106 3.507786 GTCTTGAGTTTGCGTTGGTTTT 58.492 40.909 0.00 0.00 0.00 2.43
106 107 2.477189 CGTCTTGAGTTTGCGTTGGTTT 60.477 45.455 0.00 0.00 0.00 3.27
107 108 1.063469 CGTCTTGAGTTTGCGTTGGTT 59.937 47.619 0.00 0.00 0.00 3.67
108 109 0.655733 CGTCTTGAGTTTGCGTTGGT 59.344 50.000 0.00 0.00 0.00 3.67
109 110 0.655733 ACGTCTTGAGTTTGCGTTGG 59.344 50.000 0.00 0.00 31.37 3.77
110 111 2.659291 GCTACGTCTTGAGTTTGCGTTG 60.659 50.000 0.00 0.00 37.05 4.10
111 112 1.525619 GCTACGTCTTGAGTTTGCGTT 59.474 47.619 0.00 0.00 37.05 4.84
112 113 1.137513 GCTACGTCTTGAGTTTGCGT 58.862 50.000 0.00 0.00 39.23 5.24
113 114 1.136611 GTGCTACGTCTTGAGTTTGCG 60.137 52.381 0.00 0.00 0.00 4.85
114 115 2.096713 CAGTGCTACGTCTTGAGTTTGC 60.097 50.000 0.00 0.00 0.00 3.68
115 116 3.182572 GTCAGTGCTACGTCTTGAGTTTG 59.817 47.826 0.00 0.00 0.00 2.93
116 117 3.381949 GTCAGTGCTACGTCTTGAGTTT 58.618 45.455 0.00 0.00 0.00 2.66
117 118 2.288273 GGTCAGTGCTACGTCTTGAGTT 60.288 50.000 0.00 0.00 0.00 3.01
118 119 1.269998 GGTCAGTGCTACGTCTTGAGT 59.730 52.381 0.00 0.00 0.00 3.41
119 120 1.729472 CGGTCAGTGCTACGTCTTGAG 60.729 57.143 0.00 0.00 0.00 3.02
120 121 0.240145 CGGTCAGTGCTACGTCTTGA 59.760 55.000 0.00 0.00 0.00 3.02
121 122 1.344942 GCGGTCAGTGCTACGTCTTG 61.345 60.000 0.00 0.00 0.00 3.02
122 123 1.080705 GCGGTCAGTGCTACGTCTT 60.081 57.895 0.00 0.00 0.00 3.01
123 124 1.802337 TTGCGGTCAGTGCTACGTCT 61.802 55.000 0.00 0.00 0.00 4.18
124 125 0.942410 TTTGCGGTCAGTGCTACGTC 60.942 55.000 0.00 0.00 0.00 4.34
125 126 0.320421 ATTTGCGGTCAGTGCTACGT 60.320 50.000 0.00 0.00 0.00 3.57
126 127 0.796312 AATTTGCGGTCAGTGCTACG 59.204 50.000 0.00 0.00 0.00 3.51
127 128 4.413495 TTTAATTTGCGGTCAGTGCTAC 57.587 40.909 0.00 0.00 0.00 3.58
128 129 4.941263 AGATTTAATTTGCGGTCAGTGCTA 59.059 37.500 0.00 0.00 0.00 3.49
129 130 3.758554 AGATTTAATTTGCGGTCAGTGCT 59.241 39.130 0.00 0.00 0.00 4.40
130 131 3.853671 CAGATTTAATTTGCGGTCAGTGC 59.146 43.478 0.00 0.00 0.00 4.40
131 132 4.155826 TCCAGATTTAATTTGCGGTCAGTG 59.844 41.667 0.00 0.00 0.00 3.66
132 133 4.156008 GTCCAGATTTAATTTGCGGTCAGT 59.844 41.667 0.00 0.00 0.00 3.41
141 142 5.354234 CGTACCAGCAGTCCAGATTTAATTT 59.646 40.000 0.00 0.00 0.00 1.82
145 146 2.167693 CCGTACCAGCAGTCCAGATTTA 59.832 50.000 0.00 0.00 0.00 1.40
248 249 0.605319 CTTCACTTGGTAGGCGGCAA 60.605 55.000 13.08 0.00 0.00 4.52
291 292 1.303888 CAAGCCAGCACAGGTCCAT 60.304 57.895 0.00 0.00 0.00 3.41
405 406 0.608308 TCGATCTCGTGGTGTGGAGT 60.608 55.000 0.00 0.00 40.80 3.85
484 485 1.138859 TCCCCGCACTCTACATTGATG 59.861 52.381 0.00 0.00 0.00 3.07
489 490 1.043673 GTCCTCCCCGCACTCTACAT 61.044 60.000 0.00 0.00 0.00 2.29
788 1570 4.055710 TCTATTGGTCTCTGGGTGTACA 57.944 45.455 0.00 0.00 0.00 2.90
1231 2021 1.225745 GCGTGTATGTTGCTCGTGC 60.226 57.895 1.71 1.71 40.20 5.34
1595 2394 1.903877 GCCTCCACTTGCAGCTCCTA 61.904 60.000 0.00 0.00 0.00 2.94
1701 2500 2.125753 CTGGCAGGAGCAGACGTC 60.126 66.667 7.70 7.70 44.61 4.34
1905 2704 2.353605 GCCATCATCTTCTCTCCGATCC 60.354 54.545 0.00 0.00 0.00 3.36
1982 2784 2.587194 CTCCAATCGCTGCCCTCG 60.587 66.667 0.00 0.00 0.00 4.63
1995 2797 0.828022 ACCATTAACGCGATCCTCCA 59.172 50.000 15.93 0.00 0.00 3.86
2249 3053 1.675552 CCCACATAAACCCATCGGAC 58.324 55.000 0.00 0.00 0.00 4.79
2297 3101 4.634199 TCTGACCGGTTATTTTTCGTCTT 58.366 39.130 9.42 0.00 0.00 3.01
2504 3313 0.535335 TCCCTCTCCCAATTTCGTCG 59.465 55.000 0.00 0.00 0.00 5.12
2596 3410 4.214545 GCACACTATACGCATCTCTACTCT 59.785 45.833 0.00 0.00 0.00 3.24
2608 3422 2.852413 CGGAAACTCAGCACACTATACG 59.148 50.000 0.00 0.00 0.00 3.06
2611 3425 3.067106 CAACGGAAACTCAGCACACTAT 58.933 45.455 0.00 0.00 0.00 2.12
2612 3426 2.479837 CAACGGAAACTCAGCACACTA 58.520 47.619 0.00 0.00 0.00 2.74
2613 3427 1.299541 CAACGGAAACTCAGCACACT 58.700 50.000 0.00 0.00 0.00 3.55
2614 3428 0.307760 CCAACGGAAACTCAGCACAC 59.692 55.000 0.00 0.00 0.00 3.82
2615 3429 0.107410 ACCAACGGAAACTCAGCACA 60.107 50.000 0.00 0.00 0.00 4.57
2616 3430 1.002792 GAACCAACGGAAACTCAGCAC 60.003 52.381 0.00 0.00 0.00 4.40
2617 3431 1.134220 AGAACCAACGGAAACTCAGCA 60.134 47.619 0.00 0.00 0.00 4.41
2618 3432 1.264288 CAGAACCAACGGAAACTCAGC 59.736 52.381 0.00 0.00 0.00 4.26
2619 3433 2.544267 GACAGAACCAACGGAAACTCAG 59.456 50.000 0.00 0.00 0.00 3.35
2620 3434 2.093394 TGACAGAACCAACGGAAACTCA 60.093 45.455 0.00 0.00 0.00 3.41
2621 3435 2.287103 GTGACAGAACCAACGGAAACTC 59.713 50.000 0.00 0.00 0.00 3.01
2622 3436 2.285977 GTGACAGAACCAACGGAAACT 58.714 47.619 0.00 0.00 0.00 2.66
2623 3437 1.004292 CGTGACAGAACCAACGGAAAC 60.004 52.381 0.00 0.00 0.00 2.78
2624 3438 1.292061 CGTGACAGAACCAACGGAAA 58.708 50.000 0.00 0.00 0.00 3.13
2625 3439 1.155424 GCGTGACAGAACCAACGGAA 61.155 55.000 0.00 0.00 0.00 4.30
2626 3440 1.593209 GCGTGACAGAACCAACGGA 60.593 57.895 0.00 0.00 0.00 4.69
2627 3441 2.604174 GGCGTGACAGAACCAACGG 61.604 63.158 0.00 0.00 0.00 4.44
2628 3442 1.227999 ATGGCGTGACAGAACCAACG 61.228 55.000 0.00 0.00 35.41 4.10
2629 3443 0.517316 GATGGCGTGACAGAACCAAC 59.483 55.000 0.00 0.00 35.41 3.77
2630 3444 0.605319 GGATGGCGTGACAGAACCAA 60.605 55.000 0.00 0.00 35.41 3.67
2631 3445 1.003839 GGATGGCGTGACAGAACCA 60.004 57.895 0.00 0.00 36.43 3.67
2632 3446 2.100631 CGGATGGCGTGACAGAACC 61.101 63.158 0.00 0.00 0.00 3.62
2633 3447 2.740714 GCGGATGGCGTGACAGAAC 61.741 63.158 0.00 0.00 0.00 3.01
2634 3448 2.434185 GCGGATGGCGTGACAGAA 60.434 61.111 0.00 0.00 0.00 3.02
2643 3457 1.068417 TACGTATGGTGCGGATGGC 59.932 57.895 0.00 0.00 43.96 4.40
2644 3458 0.103390 TGTACGTATGGTGCGGATGG 59.897 55.000 0.00 0.00 33.41 3.51
2645 3459 2.148916 ATGTACGTATGGTGCGGATG 57.851 50.000 0.00 0.00 33.41 3.51
2646 3460 3.845178 CATATGTACGTATGGTGCGGAT 58.155 45.455 22.46 0.00 33.41 4.18
2647 3461 2.608506 GCATATGTACGTATGGTGCGGA 60.609 50.000 28.21 0.00 33.61 5.54
2648 3462 1.724623 GCATATGTACGTATGGTGCGG 59.275 52.381 28.21 9.51 33.61 5.69
2649 3463 1.724623 GGCATATGTACGTATGGTGCG 59.275 52.381 28.21 10.10 33.61 5.34
2650 3464 2.736721 CTGGCATATGTACGTATGGTGC 59.263 50.000 28.21 19.34 33.61 5.01
2651 3465 2.736721 GCTGGCATATGTACGTATGGTG 59.263 50.000 28.21 12.06 33.61 4.17
2652 3466 2.367241 TGCTGGCATATGTACGTATGGT 59.633 45.455 28.21 0.00 33.61 3.55
2653 3467 2.995939 CTGCTGGCATATGTACGTATGG 59.004 50.000 28.21 17.02 33.61 2.74
2654 3468 2.413112 GCTGCTGGCATATGTACGTATG 59.587 50.000 24.85 24.85 41.35 2.39
2655 3469 2.612972 GGCTGCTGGCATATGTACGTAT 60.613 50.000 12.45 1.51 44.01 3.06
2656 3470 1.270094 GGCTGCTGGCATATGTACGTA 60.270 52.381 12.45 0.00 44.01 3.57
2657 3471 0.532862 GGCTGCTGGCATATGTACGT 60.533 55.000 12.45 0.00 44.01 3.57
2658 3472 1.230635 GGGCTGCTGGCATATGTACG 61.231 60.000 18.73 0.00 44.01 3.67
2659 3473 0.109342 AGGGCTGCTGGCATATGTAC 59.891 55.000 18.73 0.00 44.01 2.90
2660 3474 0.109153 CAGGGCTGCTGGCATATGTA 59.891 55.000 18.73 0.00 44.01 2.29
2661 3475 1.152819 CAGGGCTGCTGGCATATGT 60.153 57.895 18.73 0.00 44.01 2.29
2662 3476 0.754217 AACAGGGCTGCTGGCATATG 60.754 55.000 18.73 15.04 44.01 1.78
2663 3477 0.466922 GAACAGGGCTGCTGGCATAT 60.467 55.000 18.73 0.00 44.01 1.78
2664 3478 1.077501 GAACAGGGCTGCTGGCATA 60.078 57.895 18.73 0.00 44.01 3.14
2665 3479 2.362120 GAACAGGGCTGCTGGCAT 60.362 61.111 18.73 9.14 44.01 4.40
2666 3480 4.666253 GGAACAGGGCTGCTGGCA 62.666 66.667 18.73 0.00 44.01 4.92
2667 3481 4.357279 AGGAACAGGGCTGCTGGC 62.357 66.667 8.77 8.77 40.90 4.85
2668 3482 2.045536 GAGGAACAGGGCTGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
2669 3483 1.078567 GAGAGGAACAGGGCTGCTG 60.079 63.158 0.00 0.00 0.00 4.41
2670 3484 2.297129 GGAGAGGAACAGGGCTGCT 61.297 63.158 0.00 0.00 0.00 4.24
2671 3485 2.250741 GAGGAGAGGAACAGGGCTGC 62.251 65.000 0.00 0.00 0.00 5.25
2672 3486 1.621672 GGAGGAGAGGAACAGGGCTG 61.622 65.000 0.00 0.00 0.00 4.85
2673 3487 1.306568 GGAGGAGAGGAACAGGGCT 60.307 63.158 0.00 0.00 0.00 5.19
2674 3488 1.306568 AGGAGGAGAGGAACAGGGC 60.307 63.158 0.00 0.00 0.00 5.19
2675 3489 0.338120 AGAGGAGGAGAGGAACAGGG 59.662 60.000 0.00 0.00 0.00 4.45
2676 3490 1.687996 GGAGAGGAGGAGAGGAACAGG 60.688 61.905 0.00 0.00 0.00 4.00
2677 3491 1.006519 TGGAGAGGAGGAGAGGAACAG 59.993 57.143 0.00 0.00 0.00 3.16
2678 3492 1.084866 TGGAGAGGAGGAGAGGAACA 58.915 55.000 0.00 0.00 0.00 3.18
2679 3493 2.239681 TTGGAGAGGAGGAGAGGAAC 57.760 55.000 0.00 0.00 0.00 3.62
2680 3494 2.756907 CATTGGAGAGGAGGAGAGGAA 58.243 52.381 0.00 0.00 0.00 3.36
2681 3495 1.690845 GCATTGGAGAGGAGGAGAGGA 60.691 57.143 0.00 0.00 0.00 3.71
2682 3496 0.758123 GCATTGGAGAGGAGGAGAGG 59.242 60.000 0.00 0.00 0.00 3.69
2683 3497 0.388659 CGCATTGGAGAGGAGGAGAG 59.611 60.000 0.00 0.00 0.00 3.20
2684 3498 0.324738 ACGCATTGGAGAGGAGGAGA 60.325 55.000 0.00 0.00 0.00 3.71
2685 3499 1.067821 GTACGCATTGGAGAGGAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
2686 3500 1.112113 GTACGCATTGGAGAGGAGGA 58.888 55.000 0.00 0.00 0.00 3.71
2687 3501 0.249073 CGTACGCATTGGAGAGGAGG 60.249 60.000 0.52 0.00 0.00 4.30
2688 3502 0.456221 ACGTACGCATTGGAGAGGAG 59.544 55.000 16.72 0.00 0.00 3.69
2689 3503 1.402968 GTACGTACGCATTGGAGAGGA 59.597 52.381 16.72 0.00 0.00 3.71
2690 3504 1.535437 GGTACGTACGCATTGGAGAGG 60.535 57.143 16.72 0.00 0.00 3.69
2691 3505 1.133598 TGGTACGTACGCATTGGAGAG 59.866 52.381 16.72 0.00 0.00 3.20
2692 3506 1.133598 CTGGTACGTACGCATTGGAGA 59.866 52.381 16.72 0.00 0.00 3.71
2693 3507 1.556564 CTGGTACGTACGCATTGGAG 58.443 55.000 16.72 0.11 0.00 3.86
2694 3508 0.458889 GCTGGTACGTACGCATTGGA 60.459 55.000 16.72 0.00 0.00 3.53
2695 3509 0.459585 AGCTGGTACGTACGCATTGG 60.460 55.000 22.21 10.99 0.00 3.16
2696 3510 0.921347 GAGCTGGTACGTACGCATTG 59.079 55.000 22.21 11.53 0.00 2.82
2697 3511 0.179119 GGAGCTGGTACGTACGCATT 60.179 55.000 22.21 12.14 0.00 3.56
2698 3512 1.317431 TGGAGCTGGTACGTACGCAT 61.317 55.000 22.21 9.10 0.00 4.73
2699 3513 1.972752 TGGAGCTGGTACGTACGCA 60.973 57.895 22.21 17.99 0.00 5.24
2700 3514 1.515736 GTGGAGCTGGTACGTACGC 60.516 63.158 16.72 16.97 0.00 4.42
2701 3515 1.138247 GGTGGAGCTGGTACGTACG 59.862 63.158 18.98 15.01 0.00 3.67
2702 3516 0.822164 ATGGTGGAGCTGGTACGTAC 59.178 55.000 17.56 17.56 0.00 3.67
2703 3517 1.563924 AATGGTGGAGCTGGTACGTA 58.436 50.000 0.00 0.00 0.00 3.57
2704 3518 0.690762 AAATGGTGGAGCTGGTACGT 59.309 50.000 0.00 0.00 0.00 3.57
2705 3519 1.369625 GAAATGGTGGAGCTGGTACG 58.630 55.000 0.00 0.00 0.00 3.67
2706 3520 1.004277 TGGAAATGGTGGAGCTGGTAC 59.996 52.381 0.00 0.00 0.00 3.34
2707 3521 1.367346 TGGAAATGGTGGAGCTGGTA 58.633 50.000 0.00 0.00 0.00 3.25
2708 3522 0.482446 TTGGAAATGGTGGAGCTGGT 59.518 50.000 0.00 0.00 0.00 4.00
2709 3523 0.890683 GTTGGAAATGGTGGAGCTGG 59.109 55.000 0.00 0.00 0.00 4.85
2710 3524 1.619654 TGTTGGAAATGGTGGAGCTG 58.380 50.000 0.00 0.00 0.00 4.24
2711 3525 2.173519 CATGTTGGAAATGGTGGAGCT 58.826 47.619 0.00 0.00 0.00 4.09
2712 3526 1.404583 GCATGTTGGAAATGGTGGAGC 60.405 52.381 0.00 0.00 0.00 4.70
2713 3527 1.894466 TGCATGTTGGAAATGGTGGAG 59.106 47.619 0.00 0.00 0.00 3.86
2714 3528 2.006805 TGCATGTTGGAAATGGTGGA 57.993 45.000 0.00 0.00 0.00 4.02
2715 3529 2.623535 CATGCATGTTGGAAATGGTGG 58.376 47.619 18.91 0.00 0.00 4.61
2716 3530 2.623535 CCATGCATGTTGGAAATGGTG 58.376 47.619 24.58 1.51 36.26 4.17
2717 3531 1.065998 GCCATGCATGTTGGAAATGGT 60.066 47.619 24.58 0.00 40.00 3.55
2718 3532 1.066071 TGCCATGCATGTTGGAAATGG 60.066 47.619 24.58 9.32 40.67 3.16
2719 3533 2.004017 GTGCCATGCATGTTGGAAATG 58.996 47.619 24.58 8.31 41.91 2.32
2720 3534 1.624312 TGTGCCATGCATGTTGGAAAT 59.376 42.857 24.58 0.00 41.91 2.17
2721 3535 1.046204 TGTGCCATGCATGTTGGAAA 58.954 45.000 24.58 4.62 41.91 3.13
2722 3536 0.317799 GTGTGCCATGCATGTTGGAA 59.682 50.000 24.58 3.34 41.91 3.53
2723 3537 0.826672 TGTGTGCCATGCATGTTGGA 60.827 50.000 24.58 9.40 41.91 3.53
2724 3538 0.033642 TTGTGTGCCATGCATGTTGG 59.966 50.000 24.58 13.13 41.91 3.77
2725 3539 1.141645 GTTGTGTGCCATGCATGTTG 58.858 50.000 24.58 11.90 41.91 3.33
2726 3540 0.033781 GGTTGTGTGCCATGCATGTT 59.966 50.000 24.58 0.00 41.91 2.71
2727 3541 1.667151 GGTTGTGTGCCATGCATGT 59.333 52.632 24.58 0.00 41.91 3.21
2728 3542 1.079681 GGGTTGTGTGCCATGCATG 60.080 57.895 20.19 20.19 41.91 4.06
2729 3543 1.533513 TGGGTTGTGTGCCATGCAT 60.534 52.632 0.00 0.00 41.91 3.96
2730 3544 2.123554 TGGGTTGTGTGCCATGCA 60.124 55.556 0.00 0.00 35.60 3.96
2731 3545 2.339712 GTGGGTTGTGTGCCATGC 59.660 61.111 0.00 0.00 0.00 4.06
2732 3546 2.918345 CGGTGGGTTGTGTGCCATG 61.918 63.158 0.00 0.00 0.00 3.66
2733 3547 2.597217 CGGTGGGTTGTGTGCCAT 60.597 61.111 0.00 0.00 0.00 4.40
2734 3548 2.838748 TTTCGGTGGGTTGTGTGCCA 62.839 55.000 0.00 0.00 0.00 4.92
2735 3549 1.668101 TTTTCGGTGGGTTGTGTGCC 61.668 55.000 0.00 0.00 0.00 5.01
2736 3550 0.526739 GTTTTCGGTGGGTTGTGTGC 60.527 55.000 0.00 0.00 0.00 4.57
2737 3551 0.101579 GGTTTTCGGTGGGTTGTGTG 59.898 55.000 0.00 0.00 0.00 3.82
2738 3552 1.038681 GGGTTTTCGGTGGGTTGTGT 61.039 55.000 0.00 0.00 0.00 3.72
2739 3553 1.038130 TGGGTTTTCGGTGGGTTGTG 61.038 55.000 0.00 0.00 0.00 3.33
2740 3554 0.753848 CTGGGTTTTCGGTGGGTTGT 60.754 55.000 0.00 0.00 0.00 3.32
2741 3555 2.037871 CTGGGTTTTCGGTGGGTTG 58.962 57.895 0.00 0.00 0.00 3.77
2742 3556 1.830847 GCTGGGTTTTCGGTGGGTT 60.831 57.895 0.00 0.00 0.00 4.11
2743 3557 2.203437 GCTGGGTTTTCGGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
2744 3558 2.203422 TGCTGGGTTTTCGGTGGG 60.203 61.111 0.00 0.00 0.00 4.61
2745 3559 1.826054 TGTGCTGGGTTTTCGGTGG 60.826 57.895 0.00 0.00 0.00 4.61
2746 3560 1.358759 GTGTGCTGGGTTTTCGGTG 59.641 57.895 0.00 0.00 0.00 4.94
2747 3561 0.467290 ATGTGTGCTGGGTTTTCGGT 60.467 50.000 0.00 0.00 0.00 4.69
2748 3562 0.039256 CATGTGTGCTGGGTTTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
2749 3563 0.039256 CCATGTGTGCTGGGTTTTCG 60.039 55.000 0.00 0.00 0.00 3.46
2750 3564 1.327303 TCCATGTGTGCTGGGTTTTC 58.673 50.000 0.00 0.00 34.36 2.29
2751 3565 1.619827 CATCCATGTGTGCTGGGTTTT 59.380 47.619 0.00 0.00 34.36 2.43
2752 3566 1.259609 CATCCATGTGTGCTGGGTTT 58.740 50.000 0.00 0.00 34.36 3.27
2753 3567 0.612732 CCATCCATGTGTGCTGGGTT 60.613 55.000 0.00 0.00 34.36 4.11
2754 3568 1.000521 CCATCCATGTGTGCTGGGT 60.001 57.895 0.00 0.00 34.36 4.51
2755 3569 0.323633 TTCCATCCATGTGTGCTGGG 60.324 55.000 0.00 0.00 34.36 4.45
2756 3570 1.100510 CTTCCATCCATGTGTGCTGG 58.899 55.000 0.00 0.00 34.93 4.85
2757 3571 1.741706 GACTTCCATCCATGTGTGCTG 59.258 52.381 0.00 0.00 0.00 4.41
2758 3572 1.632409 AGACTTCCATCCATGTGTGCT 59.368 47.619 0.00 0.00 0.00 4.40
2759 3573 2.012673 GAGACTTCCATCCATGTGTGC 58.987 52.381 0.00 0.00 0.00 4.57
2760 3574 3.268330 CAGAGACTTCCATCCATGTGTG 58.732 50.000 0.00 0.00 0.00 3.82
2761 3575 2.355513 GCAGAGACTTCCATCCATGTGT 60.356 50.000 0.00 0.00 0.00 3.72
2762 3576 2.093075 AGCAGAGACTTCCATCCATGTG 60.093 50.000 0.00 0.00 0.00 3.21
2763 3577 2.093075 CAGCAGAGACTTCCATCCATGT 60.093 50.000 0.00 0.00 0.00 3.21
2764 3578 2.093075 ACAGCAGAGACTTCCATCCATG 60.093 50.000 0.00 0.00 0.00 3.66
2765 3579 2.194859 ACAGCAGAGACTTCCATCCAT 58.805 47.619 0.00 0.00 0.00 3.41
2766 3580 1.649321 ACAGCAGAGACTTCCATCCA 58.351 50.000 0.00 0.00 0.00 3.41
2767 3581 2.480416 CGTACAGCAGAGACTTCCATCC 60.480 54.545 0.00 0.00 0.00 3.51
2768 3582 2.164624 ACGTACAGCAGAGACTTCCATC 59.835 50.000 0.00 0.00 0.00 3.51
2769 3583 2.171840 ACGTACAGCAGAGACTTCCAT 58.828 47.619 0.00 0.00 0.00 3.41
2770 3584 1.617322 ACGTACAGCAGAGACTTCCA 58.383 50.000 0.00 0.00 0.00 3.53
2771 3585 2.475852 CGTACGTACAGCAGAGACTTCC 60.476 54.545 24.50 0.00 0.00 3.46
2772 3586 2.159234 ACGTACGTACAGCAGAGACTTC 59.841 50.000 21.41 0.00 0.00 3.01
2773 3587 2.149578 ACGTACGTACAGCAGAGACTT 58.850 47.619 21.41 0.00 0.00 3.01
2774 3588 1.805869 ACGTACGTACAGCAGAGACT 58.194 50.000 21.41 0.00 0.00 3.24
2785 3599 4.392754 TCAATCTCAAGCAGTACGTACGTA 59.607 41.667 23.60 23.60 0.00 3.57
2786 3600 3.189910 TCAATCTCAAGCAGTACGTACGT 59.810 43.478 25.98 25.98 0.00 3.57
2787 3601 3.754955 TCAATCTCAAGCAGTACGTACG 58.245 45.455 19.49 15.01 0.00 3.67
2788 3602 4.982999 TCTCAATCTCAAGCAGTACGTAC 58.017 43.478 18.10 18.10 0.00 3.67
2789 3603 4.438880 GCTCTCAATCTCAAGCAGTACGTA 60.439 45.833 0.00 0.00 34.86 3.57
2790 3604 3.674682 GCTCTCAATCTCAAGCAGTACGT 60.675 47.826 0.00 0.00 34.86 3.57
2791 3605 2.857152 GCTCTCAATCTCAAGCAGTACG 59.143 50.000 0.00 0.00 34.86 3.67
2792 3606 3.194062 GGCTCTCAATCTCAAGCAGTAC 58.806 50.000 0.00 0.00 36.47 2.73
2793 3607 2.169352 GGGCTCTCAATCTCAAGCAGTA 59.831 50.000 0.00 0.00 36.47 2.74
2794 3608 1.065564 GGGCTCTCAATCTCAAGCAGT 60.066 52.381 0.00 0.00 36.47 4.40
2795 3609 1.065636 TGGGCTCTCAATCTCAAGCAG 60.066 52.381 0.00 0.00 36.47 4.24
2796 3610 0.986527 TGGGCTCTCAATCTCAAGCA 59.013 50.000 0.00 0.00 36.47 3.91
2797 3611 1.948145 CATGGGCTCTCAATCTCAAGC 59.052 52.381 0.00 0.00 0.00 4.01
2798 3612 3.204526 GACATGGGCTCTCAATCTCAAG 58.795 50.000 0.00 0.00 0.00 3.02
2799 3613 2.419159 CGACATGGGCTCTCAATCTCAA 60.419 50.000 0.00 0.00 0.00 3.02
2800 3614 1.137675 CGACATGGGCTCTCAATCTCA 59.862 52.381 0.00 0.00 0.00 3.27
2801 3615 1.863267 CGACATGGGCTCTCAATCTC 58.137 55.000 0.00 0.00 0.00 2.75
2802 3616 0.179062 GCGACATGGGCTCTCAATCT 60.179 55.000 0.00 0.00 0.00 2.40
2803 3617 1.162800 GGCGACATGGGCTCTCAATC 61.163 60.000 10.32 0.00 0.00 2.67
2804 3618 1.153086 GGCGACATGGGCTCTCAAT 60.153 57.895 10.32 0.00 0.00 2.57
2805 3619 2.268920 GGCGACATGGGCTCTCAA 59.731 61.111 10.32 0.00 0.00 3.02
2806 3620 3.002583 TGGCGACATGGGCTCTCA 61.003 61.111 10.32 0.00 33.40 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.