Multiple sequence alignment - TraesCS1D01G449500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G449500 chr1D 100.000 3298 0 0 653 3950 491689840 491686543 0.000000e+00 6091.0
1 TraesCS1D01G449500 chr1D 83.526 1645 234 22 2326 3950 491639172 491637545 0.000000e+00 1502.0
2 TraesCS1D01G449500 chr1D 82.350 1711 277 18 2257 3950 491665763 491664061 0.000000e+00 1463.0
3 TraesCS1D01G449500 chr1D 80.794 1713 300 21 2253 3946 491696336 491694634 0.000000e+00 1314.0
4 TraesCS1D01G449500 chr1D 79.236 1257 230 21 1102 2344 491697413 491696174 0.000000e+00 846.0
5 TraesCS1D01G449500 chr1D 78.529 1169 222 25 1107 2265 491640238 491639089 0.000000e+00 741.0
6 TraesCS1D01G449500 chr1D 100.000 295 0 0 1 295 491690492 491690198 2.680000e-151 545.0
7 TraesCS1D01G449500 chr1D 80.820 610 106 8 1382 1988 491666514 491665913 5.980000e-128 468.0
8 TraesCS1D01G449500 chr1D 91.148 305 17 2 1 295 472347063 472347367 4.750000e-109 405.0
9 TraesCS1D01G449500 chr1D 80.731 301 52 3 2037 2336 491665908 491665613 3.070000e-56 230.0
10 TraesCS1D01G449500 chr1D 88.325 197 11 4 109 295 337959196 337959002 3.970000e-55 226.0
11 TraesCS1D01G449500 chr1D 85.308 211 22 5 1073 1283 491667059 491666858 4.000000e-50 209.0
12 TraesCS1D01G449500 chr1D 95.349 43 2 0 653 695 438269718 438269760 7.080000e-08 69.4
13 TraesCS1D01G449500 chr1A 89.123 1710 174 11 2248 3950 589447149 589445445 0.000000e+00 2117.0
14 TraesCS1D01G449500 chr1A 89.371 1684 171 6 2270 3950 589478793 589477115 0.000000e+00 2111.0
15 TraesCS1D01G449500 chr1A 89.477 1549 138 12 808 2347 589448509 589446977 0.000000e+00 1934.0
16 TraesCS1D01G449500 chr1A 85.919 1463 161 21 896 2344 589480078 589478647 0.000000e+00 1519.0
17 TraesCS1D01G449500 chr1A 82.132 1651 257 20 2326 3950 589500512 589498874 0.000000e+00 1380.0
18 TraesCS1D01G449500 chr1A 81.268 1703 281 27 2270 3950 589638414 589636728 0.000000e+00 1343.0
19 TraesCS1D01G449500 chr1A 81.735 1648 251 26 2262 3889 589454135 589452518 0.000000e+00 1330.0
20 TraesCS1D01G449500 chr1A 79.261 1191 206 26 1099 2265 589501602 589500429 0.000000e+00 793.0
21 TraesCS1D01G449500 chr1A 78.458 1258 224 32 1102 2335 589639511 589638277 0.000000e+00 778.0
22 TraesCS1D01G449500 chr1A 78.291 1018 180 25 1056 2055 589510651 589509657 5.610000e-173 617.0
23 TraesCS1D01G449500 chr1B 82.606 1650 243 25 2326 3950 683579517 683577887 0.000000e+00 1417.0
24 TraesCS1D01G449500 chr1B 81.884 1645 261 29 2329 3948 683583308 683581676 0.000000e+00 1352.0
25 TraesCS1D01G449500 chr1B 80.085 1170 203 24 1107 2264 683584381 683583230 0.000000e+00 843.0
26 TraesCS1D01G449500 chr7A 91.148 305 17 2 1 295 700069659 700069355 4.750000e-109 405.0
27 TraesCS1D01G449500 chr7D 91.148 305 16 3 1 295 10957903 10957600 1.710000e-108 403.0
28 TraesCS1D01G449500 chr7D 90.492 305 19 6 1 295 91557456 91557760 1.030000e-105 394.0
29 TraesCS1D01G449500 chr7D 90.698 301 17 3 4 295 47501088 47500790 1.330000e-104 390.0
30 TraesCS1D01G449500 chr7D 89.508 305 22 2 1 295 575191576 575191880 1.040000e-100 377.0
31 TraesCS1D01G449500 chr3D 90.820 305 16 5 1 295 588870130 588869828 7.950000e-107 398.0
32 TraesCS1D01G449500 chr3D 89.286 308 19 6 1 295 2741680 2741986 1.340000e-99 374.0
33 TraesCS1D01G449500 chr3D 89.439 303 22 2 3 295 495236202 495235900 1.340000e-99 374.0
34 TraesCS1D01G449500 chr3D 90.000 50 3 2 654 702 131046950 131046998 3.300000e-06 63.9
35 TraesCS1D01G449500 chr5D 81.760 466 85 0 3449 3914 434475918 434476383 1.330000e-104 390.0
36 TraesCS1D01G449500 chr5D 89.769 303 20 3 3 295 374397728 374398029 1.040000e-100 377.0
37 TraesCS1D01G449500 chr5D 88.852 305 24 2 1 295 445219159 445219463 2.240000e-97 366.0
38 TraesCS1D01G449500 chr5D 72.237 1149 262 41 1104 2232 434473718 434474829 6.410000e-78 302.0
39 TraesCS1D01G449500 chr5D 93.333 45 1 2 653 696 302168890 302168933 9.160000e-07 65.8
40 TraesCS1D01G449500 chr4D 89.836 305 20 2 1 294 479386678 479386374 8.010000e-102 381.0
41 TraesCS1D01G449500 chr4D 87.541 305 25 5 1 295 469506337 469506036 1.360000e-89 340.0
42 TraesCS1D01G449500 chr2D 89.439 303 15 3 3 295 376698594 376698889 2.240000e-97 366.0
43 TraesCS1D01G449500 chr2D 100.000 38 0 0 653 690 520550773 520550810 1.970000e-08 71.3
44 TraesCS1D01G449500 chr5B 71.552 1153 260 52 1104 2232 527248976 527250084 2.360000e-62 250.0
45 TraesCS1D01G449500 chr6D 81.818 308 36 15 1 295 387407716 387408016 1.420000e-59 241.0
46 TraesCS1D01G449500 chr6D 97.561 41 0 1 653 693 58746524 58746563 7.080000e-08 69.4
47 TraesCS1D01G449500 chrUn 95.122 41 2 0 653 693 316469635 316469595 9.160000e-07 65.8
48 TraesCS1D01G449500 chr3A 97.368 38 1 0 653 690 187674 187711 9.160000e-07 65.8
49 TraesCS1D01G449500 chr3B 91.304 46 2 2 653 698 664128503 664128546 1.190000e-05 62.1
50 TraesCS1D01G449500 chr4B 89.583 48 3 2 653 700 660095104 660095149 4.260000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G449500 chr1D 491686543 491690492 3949 True 3318.0 6091 100.00000 1 3950 2 chr1D.!!$R4 3949
1 TraesCS1D01G449500 chr1D 491637545 491640238 2693 True 1121.5 1502 81.02750 1107 3950 2 chr1D.!!$R2 2843
2 TraesCS1D01G449500 chr1D 491694634 491697413 2779 True 1080.0 1314 80.01500 1102 3946 2 chr1D.!!$R5 2844
3 TraesCS1D01G449500 chr1D 491664061 491667059 2998 True 592.5 1463 82.30225 1073 3950 4 chr1D.!!$R3 2877
4 TraesCS1D01G449500 chr1A 589445445 589448509 3064 True 2025.5 2117 89.30000 808 3950 2 chr1A.!!$R3 3142
5 TraesCS1D01G449500 chr1A 589477115 589480078 2963 True 1815.0 2111 87.64500 896 3950 2 chr1A.!!$R4 3054
6 TraesCS1D01G449500 chr1A 589452518 589454135 1617 True 1330.0 1330 81.73500 2262 3889 1 chr1A.!!$R1 1627
7 TraesCS1D01G449500 chr1A 589498874 589501602 2728 True 1086.5 1380 80.69650 1099 3950 2 chr1A.!!$R5 2851
8 TraesCS1D01G449500 chr1A 589636728 589639511 2783 True 1060.5 1343 79.86300 1102 3950 2 chr1A.!!$R6 2848
9 TraesCS1D01G449500 chr1A 589509657 589510651 994 True 617.0 617 78.29100 1056 2055 1 chr1A.!!$R2 999
10 TraesCS1D01G449500 chr1B 683577887 683584381 6494 True 1204.0 1417 81.52500 1107 3950 3 chr1B.!!$R1 2843
11 TraesCS1D01G449500 chr5D 434473718 434476383 2665 False 346.0 390 76.99850 1104 3914 2 chr5D.!!$F4 2810
12 TraesCS1D01G449500 chr5B 527248976 527250084 1108 False 250.0 250 71.55200 1104 2232 1 chr5B.!!$F1 1128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 720 0.035056 CTTTGGCCTTCCCAGTCGAT 60.035 55.0 3.32 0.00 46.39 3.59 F
1212 1235 0.109781 GGCAACAAGGTGCACATACG 60.110 55.0 20.43 9.26 46.81 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1960 0.098728 CAAATTAGGAAGTGCGCCGG 59.901 55.0 4.18 0.0 0.0 6.13 R
3009 7091 0.482446 TTGCCAGATGGGTTCCACTT 59.518 50.0 0.12 0.0 35.8 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.106925 GTGGAGGGGCTGCCTCAG 62.107 72.222 22.77 0.00 36.15 3.35
27 28 2.977178 CTGCCTCAGCGAACCTCT 59.023 61.111 0.00 0.00 44.31 3.69
28 29 1.447489 CTGCCTCAGCGAACCTCTG 60.447 63.158 0.00 0.00 44.31 3.35
29 30 2.817396 GCCTCAGCGAACCTCTGC 60.817 66.667 0.00 0.00 0.00 4.26
30 31 2.977178 CCTCAGCGAACCTCTGCT 59.023 61.111 0.00 0.00 43.58 4.24
31 32 1.153667 CCTCAGCGAACCTCTGCTC 60.154 63.158 0.00 0.00 40.03 4.26
32 33 1.603236 CCTCAGCGAACCTCTGCTCT 61.603 60.000 0.00 0.00 40.03 4.09
33 34 0.246086 CTCAGCGAACCTCTGCTCTT 59.754 55.000 0.00 0.00 40.03 2.85
34 35 0.681733 TCAGCGAACCTCTGCTCTTT 59.318 50.000 0.00 0.00 40.03 2.52
35 36 1.070758 TCAGCGAACCTCTGCTCTTTT 59.929 47.619 0.00 0.00 40.03 2.27
36 37 1.876156 CAGCGAACCTCTGCTCTTTTT 59.124 47.619 0.00 0.00 40.03 1.94
37 38 2.096019 CAGCGAACCTCTGCTCTTTTTC 60.096 50.000 0.00 0.00 40.03 2.29
38 39 1.197949 GCGAACCTCTGCTCTTTTTCC 59.802 52.381 0.00 0.00 0.00 3.13
39 40 1.461127 CGAACCTCTGCTCTTTTTCCG 59.539 52.381 0.00 0.00 0.00 4.30
40 41 1.807142 GAACCTCTGCTCTTTTTCCGG 59.193 52.381 0.00 0.00 0.00 5.14
41 42 0.606673 ACCTCTGCTCTTTTTCCGGC 60.607 55.000 0.00 0.00 0.00 6.13
42 43 1.639298 CCTCTGCTCTTTTTCCGGCG 61.639 60.000 0.00 0.00 0.00 6.46
43 44 1.639298 CTCTGCTCTTTTTCCGGCGG 61.639 60.000 22.51 22.51 0.00 6.13
44 45 2.671619 TGCTCTTTTTCCGGCGGG 60.672 61.111 27.98 9.72 0.00 6.13
45 46 3.440415 GCTCTTTTTCCGGCGGGG 61.440 66.667 27.98 11.34 37.02 5.73
46 47 2.349755 CTCTTTTTCCGGCGGGGA 59.650 61.111 27.98 12.78 45.40 4.81
54 55 3.953775 CCGGCGGGGAATGGCTAT 61.954 66.667 20.56 0.00 38.47 2.97
55 56 2.358737 CGGCGGGGAATGGCTATC 60.359 66.667 0.00 0.00 0.00 2.08
56 57 2.883828 CGGCGGGGAATGGCTATCT 61.884 63.158 0.00 0.00 0.00 1.98
57 58 1.541310 CGGCGGGGAATGGCTATCTA 61.541 60.000 0.00 0.00 0.00 1.98
58 59 0.250513 GGCGGGGAATGGCTATCTAG 59.749 60.000 0.00 0.00 0.00 2.43
94 95 3.612681 GGCGCCGGGATACAGCTA 61.613 66.667 12.58 0.00 35.39 3.32
95 96 2.049063 GCGCCGGGATACAGCTAG 60.049 66.667 2.18 0.00 35.39 3.42
96 97 2.857744 GCGCCGGGATACAGCTAGT 61.858 63.158 2.18 0.00 35.39 2.57
97 98 1.007271 CGCCGGGATACAGCTAGTG 60.007 63.158 2.18 0.00 35.39 2.74
98 99 1.367840 GCCGGGATACAGCTAGTGG 59.632 63.158 2.18 0.00 39.74 4.00
99 100 1.367840 CCGGGATACAGCTAGTGGC 59.632 63.158 0.00 0.00 42.19 5.01
137 138 3.839432 GGAGGCGAGTCGGGGAAG 61.839 72.222 15.52 0.00 0.00 3.46
138 139 2.754658 GAGGCGAGTCGGGGAAGA 60.755 66.667 15.52 0.00 0.00 2.87
139 140 2.283676 AGGCGAGTCGGGGAAGAA 60.284 61.111 15.52 0.00 0.00 2.52
140 141 1.885163 GAGGCGAGTCGGGGAAGAAA 61.885 60.000 15.52 0.00 0.00 2.52
141 142 1.004200 GGCGAGTCGGGGAAGAAAA 60.004 57.895 15.52 0.00 0.00 2.29
142 143 0.604511 GGCGAGTCGGGGAAGAAAAA 60.605 55.000 15.52 0.00 0.00 1.94
143 144 0.516001 GCGAGTCGGGGAAGAAAAAC 59.484 55.000 15.52 0.00 0.00 2.43
144 145 1.876837 GCGAGTCGGGGAAGAAAAACT 60.877 52.381 15.52 0.00 0.00 2.66
145 146 2.490991 CGAGTCGGGGAAGAAAAACTT 58.509 47.619 4.10 0.00 42.03 2.66
146 147 2.223377 CGAGTCGGGGAAGAAAAACTTG 59.777 50.000 4.10 0.00 39.13 3.16
147 148 3.473625 GAGTCGGGGAAGAAAAACTTGA 58.526 45.455 0.00 0.00 39.13 3.02
148 149 3.211865 AGTCGGGGAAGAAAAACTTGAC 58.788 45.455 0.00 0.00 39.13 3.18
149 150 3.118000 AGTCGGGGAAGAAAAACTTGACT 60.118 43.478 0.00 0.00 39.13 3.41
150 151 3.630769 GTCGGGGAAGAAAAACTTGACTT 59.369 43.478 0.00 0.00 39.13 3.01
151 152 4.097437 GTCGGGGAAGAAAAACTTGACTTT 59.903 41.667 0.00 0.00 39.13 2.66
152 153 4.707934 TCGGGGAAGAAAAACTTGACTTTT 59.292 37.500 0.00 0.00 39.13 2.27
153 154 5.041287 CGGGGAAGAAAAACTTGACTTTTC 58.959 41.667 0.79 0.79 41.21 2.29
154 155 5.393678 CGGGGAAGAAAAACTTGACTTTTCA 60.394 40.000 9.87 0.00 42.63 2.69
155 156 5.810587 GGGGAAGAAAAACTTGACTTTTCAC 59.189 40.000 9.87 4.59 42.63 3.18
156 157 5.810587 GGGAAGAAAAACTTGACTTTTCACC 59.189 40.000 9.87 11.05 42.63 4.02
157 158 6.351033 GGGAAGAAAAACTTGACTTTTCACCT 60.351 38.462 16.20 2.75 42.63 4.00
158 159 6.531594 GGAAGAAAAACTTGACTTTTCACCTG 59.468 38.462 9.87 0.00 42.63 4.00
159 160 6.834168 AGAAAAACTTGACTTTTCACCTGA 57.166 33.333 9.87 0.00 42.63 3.86
160 161 6.621613 AGAAAAACTTGACTTTTCACCTGAC 58.378 36.000 9.87 0.00 42.63 3.51
161 162 5.975693 AAAACTTGACTTTTCACCTGACA 57.024 34.783 0.00 0.00 0.00 3.58
162 163 5.567138 AAACTTGACTTTTCACCTGACAG 57.433 39.130 0.00 0.00 0.00 3.51
163 164 4.222124 ACTTGACTTTTCACCTGACAGT 57.778 40.909 0.93 0.00 0.00 3.55
164 165 3.941483 ACTTGACTTTTCACCTGACAGTG 59.059 43.478 0.93 0.52 39.20 3.66
165 166 3.627395 TGACTTTTCACCTGACAGTGT 57.373 42.857 0.00 0.00 38.91 3.55
166 167 3.270027 TGACTTTTCACCTGACAGTGTG 58.730 45.455 0.00 14.48 38.91 3.82
167 168 2.614057 GACTTTTCACCTGACAGTGTGG 59.386 50.000 18.29 0.00 38.91 4.17
168 169 1.949525 CTTTTCACCTGACAGTGTGGG 59.050 52.381 18.29 5.35 38.91 4.61
169 170 0.465460 TTTCACCTGACAGTGTGGGC 60.465 55.000 18.29 0.00 38.91 5.36
170 171 1.344953 TTCACCTGACAGTGTGGGCT 61.345 55.000 18.29 0.00 38.91 5.19
171 172 1.149174 CACCTGACAGTGTGGGCTT 59.851 57.895 0.00 0.00 32.89 4.35
172 173 0.466189 CACCTGACAGTGTGGGCTTT 60.466 55.000 0.00 0.00 32.89 3.51
173 174 0.258774 ACCTGACAGTGTGGGCTTTT 59.741 50.000 0.00 0.00 0.00 2.27
174 175 0.954452 CCTGACAGTGTGGGCTTTTC 59.046 55.000 0.00 0.00 0.00 2.29
175 176 0.954452 CTGACAGTGTGGGCTTTTCC 59.046 55.000 0.00 0.00 0.00 3.13
184 185 4.419939 GGCTTTTCCCTTGCGCCG 62.420 66.667 4.18 0.00 0.00 6.46
185 186 3.361977 GCTTTTCCCTTGCGCCGA 61.362 61.111 4.18 0.00 0.00 5.54
186 187 2.914908 GCTTTTCCCTTGCGCCGAA 61.915 57.895 4.18 0.00 0.00 4.30
187 188 1.210155 CTTTTCCCTTGCGCCGAAG 59.790 57.895 4.18 2.05 0.00 3.79
188 189 2.802740 CTTTTCCCTTGCGCCGAAGC 62.803 60.000 4.18 0.00 37.71 3.86
240 241 3.436055 CGATCGCCGGGCCAAAAA 61.436 61.111 14.55 0.00 33.91 1.94
263 264 2.398036 CCGAACCGGCGATTTTCG 59.602 61.111 22.71 22.71 41.17 3.46
264 265 2.095847 CCGAACCGGCGATTTTCGA 61.096 57.895 27.84 0.00 43.83 3.71
265 266 1.058284 CGAACCGGCGATTTTCGAC 59.942 57.895 24.31 0.00 46.24 4.20
270 271 4.180496 GGCGATTTTCGACGTCCT 57.820 55.556 10.58 0.00 43.74 3.85
271 272 1.708027 GGCGATTTTCGACGTCCTG 59.292 57.895 10.58 0.00 43.74 3.86
272 273 1.012486 GGCGATTTTCGACGTCCTGT 61.012 55.000 10.58 0.00 43.74 4.00
273 274 0.093026 GCGATTTTCGACGTCCTGTG 59.907 55.000 10.58 0.00 43.74 3.66
274 275 0.713883 CGATTTTCGACGTCCTGTGG 59.286 55.000 10.58 0.00 43.74 4.17
275 276 1.076332 GATTTTCGACGTCCTGTGGG 58.924 55.000 10.58 0.00 0.00 4.61
276 277 0.953960 ATTTTCGACGTCCTGTGGGC 60.954 55.000 10.58 0.00 0.00 5.36
277 278 3.851845 TTTCGACGTCCTGTGGGCG 62.852 63.158 10.58 9.16 37.84 6.13
292 293 3.284449 GCGCGACTGGGGTGTTTT 61.284 61.111 12.10 0.00 0.00 2.43
293 294 2.841160 GCGCGACTGGGGTGTTTTT 61.841 57.895 12.10 0.00 0.00 1.94
669 670 3.732849 GGGAGGGAGGCTGTTGGG 61.733 72.222 0.00 0.00 0.00 4.12
670 671 3.732849 GGAGGGAGGCTGTTGGGG 61.733 72.222 0.00 0.00 0.00 4.96
671 672 3.732849 GAGGGAGGCTGTTGGGGG 61.733 72.222 0.00 0.00 0.00 5.40
689 690 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09
690 691 2.588314 GCGGCTGGAGATGCTCTG 60.588 66.667 0.00 0.00 0.00 3.35
691 692 3.086391 GCGGCTGGAGATGCTCTGA 62.086 63.158 0.00 0.00 0.00 3.27
692 693 1.067749 CGGCTGGAGATGCTCTGAG 59.932 63.158 0.00 0.00 0.00 3.35
693 694 1.674764 CGGCTGGAGATGCTCTGAGT 61.675 60.000 6.53 0.00 0.00 3.41
694 695 0.104671 GGCTGGAGATGCTCTGAGTC 59.895 60.000 6.53 0.00 0.00 3.36
695 696 1.113788 GCTGGAGATGCTCTGAGTCT 58.886 55.000 6.53 1.96 0.00 3.24
696 697 1.481772 GCTGGAGATGCTCTGAGTCTT 59.518 52.381 6.53 0.00 0.00 3.01
697 698 2.481795 GCTGGAGATGCTCTGAGTCTTC 60.482 54.545 6.53 1.82 0.00 2.87
698 699 2.101249 CTGGAGATGCTCTGAGTCTTCC 59.899 54.545 6.53 9.07 0.00 3.46
699 700 1.066908 GGAGATGCTCTGAGTCTTCCG 59.933 57.143 6.53 0.00 0.00 4.30
700 701 0.459489 AGATGCTCTGAGTCTTCCGC 59.541 55.000 6.53 0.00 0.00 5.54
701 702 0.459489 GATGCTCTGAGTCTTCCGCT 59.541 55.000 6.53 0.00 0.00 5.52
702 703 0.901124 ATGCTCTGAGTCTTCCGCTT 59.099 50.000 6.53 0.00 0.00 4.68
703 704 0.681733 TGCTCTGAGTCTTCCGCTTT 59.318 50.000 6.53 0.00 0.00 3.51
704 705 1.074752 GCTCTGAGTCTTCCGCTTTG 58.925 55.000 6.53 0.00 0.00 2.77
705 706 1.719600 CTCTGAGTCTTCCGCTTTGG 58.280 55.000 0.00 0.00 40.09 3.28
706 707 0.320771 TCTGAGTCTTCCGCTTTGGC 60.321 55.000 0.00 0.00 37.80 4.52
707 708 1.301677 CTGAGTCTTCCGCTTTGGCC 61.302 60.000 0.00 0.00 37.80 5.36
708 709 1.003233 GAGTCTTCCGCTTTGGCCT 60.003 57.895 3.32 0.00 37.80 5.19
709 710 0.606673 GAGTCTTCCGCTTTGGCCTT 60.607 55.000 3.32 0.00 37.80 4.35
710 711 0.606673 AGTCTTCCGCTTTGGCCTTC 60.607 55.000 3.32 0.00 37.80 3.46
711 712 1.303317 TCTTCCGCTTTGGCCTTCC 60.303 57.895 3.32 0.00 37.80 3.46
712 713 2.282887 TTCCGCTTTGGCCTTCCC 60.283 61.111 3.32 0.00 37.80 3.97
713 714 3.140073 TTCCGCTTTGGCCTTCCCA 62.140 57.895 3.32 0.00 43.51 4.37
714 715 3.064324 CCGCTTTGGCCTTCCCAG 61.064 66.667 3.32 0.00 46.39 4.45
715 716 2.282462 CGCTTTGGCCTTCCCAGT 60.282 61.111 3.32 0.00 46.39 4.00
716 717 2.335712 CGCTTTGGCCTTCCCAGTC 61.336 63.158 3.32 0.00 46.39 3.51
717 718 2.335712 GCTTTGGCCTTCCCAGTCG 61.336 63.158 3.32 0.00 46.39 4.18
718 719 1.374947 CTTTGGCCTTCCCAGTCGA 59.625 57.895 3.32 0.00 46.39 4.20
719 720 0.035056 CTTTGGCCTTCCCAGTCGAT 60.035 55.000 3.32 0.00 46.39 3.59
720 721 1.209504 CTTTGGCCTTCCCAGTCGATA 59.790 52.381 3.32 0.00 46.39 2.92
721 722 0.830648 TTGGCCTTCCCAGTCGATAG 59.169 55.000 3.32 0.00 46.39 2.08
722 723 1.048724 TGGCCTTCCCAGTCGATAGG 61.049 60.000 3.32 0.00 39.18 2.57
723 724 0.759436 GGCCTTCCCAGTCGATAGGA 60.759 60.000 7.60 2.57 0.00 2.94
724 725 0.676736 GCCTTCCCAGTCGATAGGAG 59.323 60.000 7.60 0.00 0.00 3.69
725 726 1.754555 GCCTTCCCAGTCGATAGGAGA 60.755 57.143 7.60 1.53 0.00 3.71
726 727 2.235016 CCTTCCCAGTCGATAGGAGAG 58.765 57.143 7.60 5.14 0.00 3.20
727 728 2.423660 CCTTCCCAGTCGATAGGAGAGT 60.424 54.545 7.60 0.00 0.00 3.24
728 729 2.350057 TCCCAGTCGATAGGAGAGTG 57.650 55.000 7.60 0.00 38.44 3.51
729 730 1.844497 TCCCAGTCGATAGGAGAGTGA 59.156 52.381 7.60 0.00 40.50 3.41
730 731 1.950909 CCCAGTCGATAGGAGAGTGAC 59.049 57.143 7.60 0.00 40.50 3.67
731 732 1.600013 CCAGTCGATAGGAGAGTGACG 59.400 57.143 0.07 0.00 40.50 4.35
732 733 1.600013 CAGTCGATAGGAGAGTGACGG 59.400 57.143 0.00 0.00 40.50 4.79
733 734 1.485480 AGTCGATAGGAGAGTGACGGA 59.515 52.381 0.00 0.00 34.82 4.69
734 735 1.598601 GTCGATAGGAGAGTGACGGAC 59.401 57.143 0.00 0.00 0.00 4.79
735 736 1.485480 TCGATAGGAGAGTGACGGACT 59.515 52.381 0.00 0.00 37.76 3.85
736 737 1.600013 CGATAGGAGAGTGACGGACTG 59.400 57.143 0.00 0.00 33.83 3.51
737 738 2.742204 CGATAGGAGAGTGACGGACTGA 60.742 54.545 0.00 0.00 33.83 3.41
738 739 2.404923 TAGGAGAGTGACGGACTGAG 57.595 55.000 0.00 0.00 33.83 3.35
739 740 0.963355 AGGAGAGTGACGGACTGAGC 60.963 60.000 0.00 0.00 33.83 4.26
740 741 1.509004 GAGAGTGACGGACTGAGCC 59.491 63.158 0.00 0.00 33.83 4.70
741 742 1.228583 AGAGTGACGGACTGAGCCA 60.229 57.895 0.00 0.00 33.83 4.75
742 743 1.080434 GAGTGACGGACTGAGCCAC 60.080 63.158 0.00 0.00 33.83 5.01
743 744 2.430921 GTGACGGACTGAGCCACG 60.431 66.667 0.00 0.00 0.00 4.94
744 745 4.357947 TGACGGACTGAGCCACGC 62.358 66.667 0.00 0.00 0.00 5.34
747 748 4.457496 CGGACTGAGCCACGCCAT 62.457 66.667 0.00 0.00 0.00 4.40
748 749 2.900273 GGACTGAGCCACGCCATA 59.100 61.111 0.00 0.00 0.00 2.74
749 750 1.227380 GGACTGAGCCACGCCATAG 60.227 63.158 0.00 0.00 0.00 2.23
750 751 1.884926 GACTGAGCCACGCCATAGC 60.885 63.158 0.00 0.00 0.00 2.97
751 752 2.303549 GACTGAGCCACGCCATAGCT 62.304 60.000 0.00 0.00 40.24 3.32
752 753 1.886313 CTGAGCCACGCCATAGCTG 60.886 63.158 0.00 0.00 36.87 4.24
753 754 3.275338 GAGCCACGCCATAGCTGC 61.275 66.667 0.00 0.00 36.87 5.25
754 755 4.100084 AGCCACGCCATAGCTGCA 62.100 61.111 1.02 0.00 34.99 4.41
755 756 3.580193 GCCACGCCATAGCTGCAG 61.580 66.667 10.11 10.11 36.60 4.41
756 757 3.580193 CCACGCCATAGCTGCAGC 61.580 66.667 31.53 31.53 42.49 5.25
766 767 3.194719 GCTGCAGCTGATTGGTCC 58.805 61.111 31.33 0.00 38.21 4.46
767 768 1.676635 GCTGCAGCTGATTGGTCCA 60.677 57.895 31.33 2.50 38.21 4.02
768 769 1.246056 GCTGCAGCTGATTGGTCCAA 61.246 55.000 31.33 6.80 38.21 3.53
769 770 0.524862 CTGCAGCTGATTGGTCCAAC 59.475 55.000 20.43 1.92 0.00 3.77
770 771 0.111061 TGCAGCTGATTGGTCCAACT 59.889 50.000 20.43 0.00 0.00 3.16
771 772 1.251251 GCAGCTGATTGGTCCAACTT 58.749 50.000 20.43 0.00 0.00 2.66
772 773 1.068055 GCAGCTGATTGGTCCAACTTG 60.068 52.381 20.43 2.73 0.00 3.16
773 774 1.542915 CAGCTGATTGGTCCAACTTGG 59.457 52.381 8.42 0.74 39.43 3.61
774 775 1.145738 AGCTGATTGGTCCAACTTGGT 59.854 47.619 6.41 2.59 39.03 3.67
775 776 1.270550 GCTGATTGGTCCAACTTGGTG 59.729 52.381 6.41 0.00 39.03 4.17
776 777 2.586425 CTGATTGGTCCAACTTGGTGT 58.414 47.619 6.41 0.00 39.03 4.16
777 778 2.294233 CTGATTGGTCCAACTTGGTGTG 59.706 50.000 6.41 0.00 39.03 3.82
778 779 1.000274 GATTGGTCCAACTTGGTGTGC 60.000 52.381 6.41 0.00 39.03 4.57
779 780 1.380403 TTGGTCCAACTTGGTGTGCG 61.380 55.000 7.72 0.00 39.03 5.34
780 781 1.822186 GGTCCAACTTGGTGTGCGT 60.822 57.895 7.72 0.00 39.03 5.24
781 782 1.355210 GTCCAACTTGGTGTGCGTG 59.645 57.895 7.72 0.00 39.03 5.34
782 783 1.078072 TCCAACTTGGTGTGCGTGT 60.078 52.632 7.72 0.00 39.03 4.49
783 784 1.063972 CCAACTTGGTGTGCGTGTG 59.936 57.895 0.00 0.00 31.35 3.82
784 785 1.653094 CCAACTTGGTGTGCGTGTGT 61.653 55.000 0.00 0.00 31.35 3.72
785 786 0.523125 CAACTTGGTGTGCGTGTGTG 60.523 55.000 0.00 0.00 0.00 3.82
786 787 2.024588 CTTGGTGTGCGTGTGTGC 59.975 61.111 0.00 0.00 0.00 4.57
787 788 3.788586 CTTGGTGTGCGTGTGTGCG 62.789 63.158 0.00 0.00 37.81 5.34
789 790 4.589700 GGTGTGCGTGTGTGCGTG 62.590 66.667 0.00 0.00 37.81 5.34
790 791 3.860125 GTGTGCGTGTGTGCGTGT 61.860 61.111 0.00 0.00 37.81 4.49
791 792 3.559344 TGTGCGTGTGTGCGTGTC 61.559 61.111 0.00 0.00 37.81 3.67
792 793 4.293626 GTGCGTGTGTGCGTGTCC 62.294 66.667 0.00 0.00 37.81 4.02
795 796 4.602259 CGTGTGTGCGTGTCCCCT 62.602 66.667 0.00 0.00 0.00 4.79
796 797 2.738480 GTGTGTGCGTGTCCCCTA 59.262 61.111 0.00 0.00 0.00 3.53
797 798 1.666872 GTGTGTGCGTGTCCCCTAC 60.667 63.158 0.00 0.00 0.00 3.18
798 799 2.134933 TGTGTGCGTGTCCCCTACA 61.135 57.895 0.00 0.00 35.06 2.74
799 800 1.070105 GTGTGCGTGTCCCCTACAA 59.930 57.895 0.00 0.00 40.63 2.41
800 801 0.949105 GTGTGCGTGTCCCCTACAAG 60.949 60.000 0.00 0.00 40.63 3.16
801 802 1.116536 TGTGCGTGTCCCCTACAAGA 61.117 55.000 0.00 0.00 40.63 3.02
802 803 0.669625 GTGCGTGTCCCCTACAAGAC 60.670 60.000 0.00 0.00 40.63 3.01
803 804 1.116536 TGCGTGTCCCCTACAAGACA 61.117 55.000 0.00 0.00 40.63 3.41
806 807 2.358039 TGTCCCCTACAAGACACGG 58.642 57.895 0.00 0.00 38.07 4.94
824 827 0.655733 GGCATCCGGTGAAATGTACG 59.344 55.000 0.00 0.00 0.00 3.67
829 832 2.883574 TCCGGTGAAATGTACGATGAC 58.116 47.619 0.00 0.00 0.00 3.06
830 833 1.931172 CCGGTGAAATGTACGATGACC 59.069 52.381 0.00 0.00 0.00 4.02
831 834 2.612604 CGGTGAAATGTACGATGACCA 58.387 47.619 0.00 0.00 0.00 4.02
836 839 3.007506 TGAAATGTACGATGACCACACCT 59.992 43.478 0.00 0.00 0.00 4.00
854 857 1.667724 CCTTGCTCTAACTGATTGGCG 59.332 52.381 0.00 0.00 0.00 5.69
858 861 1.202076 GCTCTAACTGATTGGCGCAAC 60.202 52.381 10.83 0.00 28.24 4.17
859 862 2.350522 CTCTAACTGATTGGCGCAACT 58.649 47.619 10.83 0.00 0.00 3.16
862 865 0.537143 AACTGATTGGCGCAACTGGA 60.537 50.000 10.83 0.00 0.00 3.86
864 867 2.262471 CTGATTGGCGCAACTGGAGC 62.262 60.000 10.83 0.00 42.17 4.70
893 896 1.760086 CCAAAGTTGTGGTGGCCCA 60.760 57.895 0.00 0.00 38.87 5.36
927 937 3.645884 CACATGCAGTTTTCTTCTTGGG 58.354 45.455 0.00 0.00 0.00 4.12
1007 1024 1.613437 CCGGAGCAAAGAAATGGTTGT 59.387 47.619 0.00 0.00 0.00 3.32
1012 1029 4.082026 GGAGCAAAGAAATGGTTGTAGCAT 60.082 41.667 0.00 0.00 38.04 3.79
1034 1051 3.054139 TGCTTCCTCTTGCTAACCATCAT 60.054 43.478 0.00 0.00 0.00 2.45
1035 1052 3.563390 GCTTCCTCTTGCTAACCATCATC 59.437 47.826 0.00 0.00 0.00 2.92
1036 1053 3.845781 TCCTCTTGCTAACCATCATCC 57.154 47.619 0.00 0.00 0.00 3.51
1037 1054 3.387962 TCCTCTTGCTAACCATCATCCT 58.612 45.455 0.00 0.00 0.00 3.24
1038 1055 4.556697 TCCTCTTGCTAACCATCATCCTA 58.443 43.478 0.00 0.00 0.00 2.94
1039 1056 5.158141 TCCTCTTGCTAACCATCATCCTAT 58.842 41.667 0.00 0.00 0.00 2.57
1047 1064 5.046304 GCTAACCATCATCCTATTCCTAGCA 60.046 44.000 0.00 0.00 0.00 3.49
1058 1075 0.321919 TTCCTAGCAACAGCCAGCAG 60.322 55.000 0.00 0.00 0.00 4.24
1105 1128 0.667184 CAACGCAAGCCAAACATCCC 60.667 55.000 0.00 0.00 45.62 3.85
1191 1214 0.586748 CGGACAATCGTCTCGTCTCG 60.587 60.000 0.00 0.00 42.21 4.04
1197 1220 1.583495 ATCGTCTCGTCTCGTGGCAA 61.583 55.000 0.00 0.00 0.00 4.52
1211 1234 3.792716 GGCAACAAGGTGCACATAC 57.207 52.632 20.43 0.61 46.81 2.39
1212 1235 0.109781 GGCAACAAGGTGCACATACG 60.110 55.000 20.43 9.26 46.81 3.06
1213 1236 0.109781 GCAACAAGGTGCACATACGG 60.110 55.000 20.43 7.67 44.29 4.02
1232 1255 3.357079 CAACTGCTGCCGGTGGAC 61.357 66.667 1.90 0.00 0.00 4.02
1299 1328 3.070159 ACCTCCACTACGATGATCCAATG 59.930 47.826 0.00 0.00 0.00 2.82
1331 1484 9.993454 TTATTTATCTGATGATGAACCTGAGAG 57.007 33.333 0.00 0.00 32.25 3.20
1368 1521 4.873259 GGTCAGTTATCTCCTTCTTTGCTC 59.127 45.833 0.00 0.00 0.00 4.26
1386 1660 2.261671 GCTCTCCGACGCCTCAAA 59.738 61.111 0.00 0.00 0.00 2.69
1430 1704 0.826715 CTCCTCGGAGATGCAAAGGA 59.173 55.000 6.58 0.00 44.53 3.36
1485 1763 7.609532 AGTTTGATTTATCTCAACCTCTCCAAG 59.390 37.037 0.00 0.00 34.96 3.61
1497 1775 3.245052 ACCTCTCCAAGATGGGTTTTCAG 60.245 47.826 0.00 0.00 38.32 3.02
1543 1821 4.504340 GCAACCTCTCCAACCTAGTACAAA 60.504 45.833 0.00 0.00 0.00 2.83
1566 1844 8.632551 CAAATTGACATACAGCGCAATATTATG 58.367 33.333 11.47 10.75 31.30 1.90
1573 1851 1.134487 CGCAATATTATGGGCGCCG 59.866 57.895 22.54 3.77 43.14 6.46
1574 1852 1.506262 GCAATATTATGGGCGCCGG 59.494 57.895 22.54 0.00 0.00 6.13
1588 1866 1.525619 GCGCCGGTTATCAATACTCAC 59.474 52.381 1.90 0.00 0.00 3.51
1632 1910 0.663688 TCCGCTCGCTAGAACATCTC 59.336 55.000 0.00 0.00 0.00 2.75
1682 1960 0.743345 GTTGACTGGGTCCATACGGC 60.743 60.000 0.00 0.00 0.00 5.68
1876 2155 3.373220 CCTCAGGAGCCTAAGGTTAGAGA 60.373 52.174 0.00 0.00 32.47 3.10
1900 2179 3.417101 TGTGGATTATCAGGCACGTTTT 58.583 40.909 0.00 0.00 0.00 2.43
2175 6250 5.009631 ACCAGCTTAAACATGCTTGATGTA 58.990 37.500 6.60 0.00 45.12 2.29
2266 6341 3.429272 CCTTCAGCAAAACAACTTGAGCA 60.429 43.478 0.00 0.00 0.00 4.26
2268 6343 1.856597 CAGCAAAACAACTTGAGCAGC 59.143 47.619 0.00 0.00 0.00 5.25
2277 6352 2.033141 TTGAGCAGCTCAGTGCCC 59.967 61.111 24.15 0.00 45.20 5.36
2280 6355 3.890936 GAGCAGCTCAGTGCCCGTT 62.891 63.158 18.17 0.00 45.20 4.44
2301 6376 5.587289 GTTGAGATTGGCACACTTACAAAA 58.413 37.500 0.00 0.00 39.29 2.44
2314 6389 9.166126 GCACACTTACAAAATTGACTTACTTAC 57.834 33.333 0.00 0.00 0.00 2.34
2323 6398 5.578157 ATTGACTTACTTACACCTTGGGT 57.422 39.130 0.00 0.00 35.62 4.51
2324 6399 5.376756 TTGACTTACTTACACCTTGGGTT 57.623 39.130 0.00 0.00 31.02 4.11
2342 6417 2.159296 GGTTCAACAACTTGAGCGGTTT 60.159 45.455 0.00 0.00 38.24 3.27
2442 6520 5.776744 ACAGAAGATCATTTTGCTGGTTTC 58.223 37.500 0.00 0.00 0.00 2.78
2462 6540 9.703892 TGGTTTCATGAATTTAAAGTACATTGG 57.296 29.630 9.40 0.00 0.00 3.16
2549 6627 4.122046 TCAGCATGGTTATCATCTTGTCG 58.878 43.478 0.00 0.00 36.16 4.35
2635 6713 4.473477 AACACAGGTCTAGTTGATAGGC 57.527 45.455 0.00 0.00 35.19 3.93
2690 6768 2.795231 ACATGGTTGGACATCTCCTG 57.205 50.000 0.00 0.00 37.48 3.86
2716 6794 0.172803 ACTAAGCGGCGACTTACCAG 59.827 55.000 12.98 10.45 0.00 4.00
2717 6795 1.146358 CTAAGCGGCGACTTACCAGC 61.146 60.000 12.98 0.00 0.00 4.85
2718 6796 1.879737 TAAGCGGCGACTTACCAGCA 61.880 55.000 12.98 0.00 31.79 4.41
2907 6989 3.961480 TCCAATGCTATATCGGGACTG 57.039 47.619 0.00 0.00 0.00 3.51
2960 7042 7.814264 ATTGCGGATCTTAGATCTTTCAAAT 57.186 32.000 20.01 11.04 0.00 2.32
2964 7046 9.996554 TGCGGATCTTAGATCTTTCAAATAATA 57.003 29.630 20.01 0.00 0.00 0.98
3009 7091 2.952978 TGTGGCCGAAAAGAGCTAAAAA 59.047 40.909 0.00 0.00 0.00 1.94
3031 7113 2.092212 AGTGGAACCCATCTGGCAATAG 60.092 50.000 0.00 0.00 37.80 1.73
3037 7119 2.243221 ACCCATCTGGCAATAGCTCTTT 59.757 45.455 0.00 0.00 41.70 2.52
3064 7146 6.677781 ATTCGTTTCAGTGAGTTCTTTCAA 57.322 33.333 0.00 0.00 0.00 2.69
3119 7201 6.542005 ACAACAATTTTTCAAGTGGATTTCCC 59.458 34.615 0.00 0.00 31.98 3.97
3191 7273 0.036388 GATTCACCGGAGAGTTGCCA 60.036 55.000 9.46 0.00 0.00 4.92
3295 7377 6.645790 AATCATGGGACTTCATGCTATTTC 57.354 37.500 0.00 0.00 42.96 2.17
3325 7407 8.474831 TCTTGATCTGTCCGATAATAACTTTGA 58.525 33.333 0.00 0.00 30.84 2.69
3404 7498 8.883731 ACAATATTTCGTGATCCTTTTGTAGAG 58.116 33.333 0.00 0.00 0.00 2.43
3423 7517 6.667848 TGTAGAGGATGAAAGTGGTGAGAATA 59.332 38.462 0.00 0.00 0.00 1.75
3481 7578 0.244721 GTGGTGATGAAAGGGCAAGC 59.755 55.000 0.00 0.00 0.00 4.01
3496 7593 1.452108 AAGCGCTTGAGTATGGGGC 60.452 57.895 24.40 0.00 38.83 5.80
3586 7683 1.140312 AGCTCCCTTGTTGGTCTCAA 58.860 50.000 0.00 0.00 0.00 3.02
3746 7850 7.277981 ACATACCTGAGCTATTTAAACTTGTCG 59.722 37.037 0.00 0.00 0.00 4.35
3774 7878 8.361139 ACAATAATCTGTCTAGAAGAATACCCG 58.639 37.037 0.00 0.00 36.32 5.28
3826 7930 4.406003 AGATGACCCAACCTCTATGTACAC 59.594 45.833 0.00 0.00 0.00 2.90
3892 7996 1.112113 GGTCCGCCTAGAGATCAACA 58.888 55.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.447489 CAGAGGTTCGCTGAGGCAG 60.447 63.158 0.00 0.00 38.60 4.85
11 12 2.659016 CAGAGGTTCGCTGAGGCA 59.341 61.111 0.00 0.00 38.60 4.75
12 13 2.817396 GCAGAGGTTCGCTGAGGC 60.817 66.667 2.96 0.00 33.20 4.70
13 14 1.153667 GAGCAGAGGTTCGCTGAGG 60.154 63.158 2.96 0.00 38.99 3.86
14 15 0.246086 AAGAGCAGAGGTTCGCTGAG 59.754 55.000 2.96 0.00 38.99 3.35
15 16 0.681733 AAAGAGCAGAGGTTCGCTGA 59.318 50.000 2.96 0.00 38.99 4.26
16 17 1.517242 AAAAGAGCAGAGGTTCGCTG 58.483 50.000 0.00 0.00 38.99 5.18
17 18 2.147150 GAAAAAGAGCAGAGGTTCGCT 58.853 47.619 0.00 0.00 42.42 4.93
18 19 1.197949 GGAAAAAGAGCAGAGGTTCGC 59.802 52.381 0.00 0.00 0.00 4.70
19 20 1.461127 CGGAAAAAGAGCAGAGGTTCG 59.539 52.381 0.00 0.00 0.00 3.95
20 21 1.807142 CCGGAAAAAGAGCAGAGGTTC 59.193 52.381 0.00 0.00 0.00 3.62
21 22 1.897560 CCGGAAAAAGAGCAGAGGTT 58.102 50.000 0.00 0.00 0.00 3.50
22 23 0.606673 GCCGGAAAAAGAGCAGAGGT 60.607 55.000 5.05 0.00 0.00 3.85
23 24 1.639298 CGCCGGAAAAAGAGCAGAGG 61.639 60.000 5.05 0.00 0.00 3.69
24 25 1.639298 CCGCCGGAAAAAGAGCAGAG 61.639 60.000 5.05 0.00 0.00 3.35
25 26 1.671054 CCGCCGGAAAAAGAGCAGA 60.671 57.895 5.05 0.00 0.00 4.26
26 27 2.690778 CCCGCCGGAAAAAGAGCAG 61.691 63.158 5.05 0.00 0.00 4.24
27 28 2.671619 CCCGCCGGAAAAAGAGCA 60.672 61.111 5.05 0.00 0.00 4.26
28 29 3.440415 CCCCGCCGGAAAAAGAGC 61.440 66.667 5.05 0.00 0.00 4.09
29 30 2.349755 TCCCCGCCGGAAAAAGAG 59.650 61.111 5.05 0.00 37.88 2.85
37 38 3.901797 GATAGCCATTCCCCGCCGG 62.902 68.421 0.00 0.00 0.00 6.13
38 39 1.541310 TAGATAGCCATTCCCCGCCG 61.541 60.000 0.00 0.00 0.00 6.46
39 40 0.250513 CTAGATAGCCATTCCCCGCC 59.749 60.000 0.00 0.00 0.00 6.13
40 41 0.391793 GCTAGATAGCCATTCCCCGC 60.392 60.000 0.09 0.00 43.39 6.13
41 42 0.108615 CGCTAGATAGCCATTCCCCG 60.109 60.000 6.28 0.00 46.34 5.73
42 43 0.250513 CCGCTAGATAGCCATTCCCC 59.749 60.000 6.28 0.00 46.34 4.81
43 44 1.205893 CTCCGCTAGATAGCCATTCCC 59.794 57.143 6.28 0.00 46.34 3.97
44 45 2.094442 GTCTCCGCTAGATAGCCATTCC 60.094 54.545 6.28 0.00 46.34 3.01
45 46 2.414824 CGTCTCCGCTAGATAGCCATTC 60.415 54.545 6.28 0.00 46.34 2.67
46 47 1.542030 CGTCTCCGCTAGATAGCCATT 59.458 52.381 6.28 0.00 46.34 3.16
47 48 1.169577 CGTCTCCGCTAGATAGCCAT 58.830 55.000 6.28 0.00 46.34 4.40
48 49 0.889638 CCGTCTCCGCTAGATAGCCA 60.890 60.000 6.28 0.00 46.34 4.75
49 50 1.587933 CCCGTCTCCGCTAGATAGCC 61.588 65.000 6.28 0.00 46.34 3.93
50 51 1.877367 CCCGTCTCCGCTAGATAGC 59.123 63.158 1.59 1.59 45.62 2.97
51 52 1.877367 GCCCGTCTCCGCTAGATAG 59.123 63.158 0.00 0.00 36.36 2.08
52 53 1.964891 CGCCCGTCTCCGCTAGATA 60.965 63.158 0.00 0.00 36.36 1.98
53 54 3.288290 CGCCCGTCTCCGCTAGAT 61.288 66.667 0.00 0.00 36.36 1.98
80 81 1.367840 CCACTAGCTGTATCCCGGC 59.632 63.158 0.00 0.00 46.50 6.13
81 82 1.367840 GCCACTAGCTGTATCCCGG 59.632 63.158 0.00 0.00 38.99 5.73
82 83 1.007271 CGCCACTAGCTGTATCCCG 60.007 63.158 0.00 0.00 40.39 5.14
83 84 1.367840 CCGCCACTAGCTGTATCCC 59.632 63.158 0.00 0.00 40.39 3.85
84 85 1.301009 GCCGCCACTAGCTGTATCC 60.301 63.158 0.00 0.00 40.39 2.59
85 86 1.301009 GGCCGCCACTAGCTGTATC 60.301 63.158 3.91 0.00 40.39 2.24
86 87 2.822399 GGCCGCCACTAGCTGTAT 59.178 61.111 3.91 0.00 40.39 2.29
87 88 3.833645 CGGCCGCCACTAGCTGTA 61.834 66.667 14.67 0.00 40.39 2.74
89 90 4.880537 CTCGGCCGCCACTAGCTG 62.881 72.222 23.51 0.00 40.39 4.24
120 121 3.839432 CTTCCCCGACTCGCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
121 122 1.885163 TTTCTTCCCCGACTCGCCTC 61.885 60.000 0.00 0.00 0.00 4.70
122 123 1.477685 TTTTCTTCCCCGACTCGCCT 61.478 55.000 0.00 0.00 0.00 5.52
123 124 0.604511 TTTTTCTTCCCCGACTCGCC 60.605 55.000 0.00 0.00 0.00 5.54
124 125 0.516001 GTTTTTCTTCCCCGACTCGC 59.484 55.000 0.00 0.00 0.00 5.03
125 126 2.165319 AGTTTTTCTTCCCCGACTCG 57.835 50.000 0.00 0.00 0.00 4.18
126 127 3.250280 GTCAAGTTTTTCTTCCCCGACTC 59.750 47.826 0.00 0.00 33.63 3.36
127 128 3.118000 AGTCAAGTTTTTCTTCCCCGACT 60.118 43.478 0.00 0.00 33.66 4.18
128 129 3.211865 AGTCAAGTTTTTCTTCCCCGAC 58.788 45.455 0.00 0.00 33.63 4.79
129 130 3.570912 AGTCAAGTTTTTCTTCCCCGA 57.429 42.857 0.00 0.00 33.63 5.14
130 131 4.649088 AAAGTCAAGTTTTTCTTCCCCG 57.351 40.909 0.00 0.00 33.63 5.73
131 132 5.810587 GTGAAAAGTCAAGTTTTTCTTCCCC 59.189 40.000 10.62 0.00 42.31 4.81
132 133 5.810587 GGTGAAAAGTCAAGTTTTTCTTCCC 59.189 40.000 10.62 5.74 42.31 3.97
133 134 6.531594 CAGGTGAAAAGTCAAGTTTTTCTTCC 59.468 38.462 10.62 11.70 42.31 3.46
134 135 7.273598 GTCAGGTGAAAAGTCAAGTTTTTCTTC 59.726 37.037 10.62 5.42 42.31 2.87
135 136 7.090808 GTCAGGTGAAAAGTCAAGTTTTTCTT 58.909 34.615 10.62 0.00 42.31 2.52
136 137 6.208599 TGTCAGGTGAAAAGTCAAGTTTTTCT 59.791 34.615 10.62 0.38 42.31 2.52
137 138 6.386654 TGTCAGGTGAAAAGTCAAGTTTTTC 58.613 36.000 4.07 4.07 42.22 2.29
138 139 6.015434 ACTGTCAGGTGAAAAGTCAAGTTTTT 60.015 34.615 4.53 0.00 34.87 1.94
139 140 5.476945 ACTGTCAGGTGAAAAGTCAAGTTTT 59.523 36.000 4.53 0.00 34.87 2.43
140 141 5.010282 ACTGTCAGGTGAAAAGTCAAGTTT 58.990 37.500 4.53 0.00 34.87 2.66
141 142 4.396166 CACTGTCAGGTGAAAAGTCAAGTT 59.604 41.667 4.53 0.00 39.34 2.66
142 143 3.941483 CACTGTCAGGTGAAAAGTCAAGT 59.059 43.478 4.53 0.00 39.34 3.16
143 144 3.941483 ACACTGTCAGGTGAAAAGTCAAG 59.059 43.478 4.53 0.00 40.13 3.02
144 145 3.689161 CACACTGTCAGGTGAAAAGTCAA 59.311 43.478 13.32 0.00 40.13 3.18
145 146 3.270027 CACACTGTCAGGTGAAAAGTCA 58.730 45.455 13.32 0.00 40.13 3.41
146 147 2.614057 CCACACTGTCAGGTGAAAAGTC 59.386 50.000 17.94 0.00 40.13 3.01
147 148 2.643551 CCACACTGTCAGGTGAAAAGT 58.356 47.619 17.94 0.00 40.13 2.66
148 149 1.949525 CCCACACTGTCAGGTGAAAAG 59.050 52.381 17.94 6.03 40.13 2.27
149 150 2.021723 GCCCACACTGTCAGGTGAAAA 61.022 52.381 17.94 0.00 40.13 2.29
150 151 0.465460 GCCCACACTGTCAGGTGAAA 60.465 55.000 17.94 0.00 40.13 2.69
151 152 1.148273 GCCCACACTGTCAGGTGAA 59.852 57.895 17.94 0.00 40.13 3.18
152 153 1.344953 AAGCCCACACTGTCAGGTGA 61.345 55.000 17.94 0.00 40.13 4.02
153 154 0.466189 AAAGCCCACACTGTCAGGTG 60.466 55.000 4.53 9.26 42.34 4.00
154 155 0.258774 AAAAGCCCACACTGTCAGGT 59.741 50.000 4.53 0.00 0.00 4.00
155 156 0.954452 GAAAAGCCCACACTGTCAGG 59.046 55.000 4.53 0.00 0.00 3.86
156 157 0.954452 GGAAAAGCCCACACTGTCAG 59.046 55.000 0.00 0.00 0.00 3.51
157 158 3.109847 GGAAAAGCCCACACTGTCA 57.890 52.632 0.00 0.00 0.00 3.58
167 168 4.419939 CGGCGCAAGGGAAAAGCC 62.420 66.667 10.83 0.00 44.00 4.35
168 169 2.802740 CTTCGGCGCAAGGGAAAAGC 62.803 60.000 10.83 0.00 38.28 3.51
169 170 1.210155 CTTCGGCGCAAGGGAAAAG 59.790 57.895 10.83 0.00 38.28 2.27
170 171 2.914908 GCTTCGGCGCAAGGGAAAA 61.915 57.895 10.83 0.00 38.28 2.29
171 172 3.361977 GCTTCGGCGCAAGGGAAA 61.362 61.111 10.83 0.00 38.28 3.13
223 224 3.436055 TTTTTGGCCCGGCGATCG 61.436 61.111 11.69 11.69 38.88 3.69
237 238 3.289062 CCGGTTCGGCCCGTTTTT 61.289 61.111 1.63 0.00 46.66 1.94
247 248 1.058284 GTCGAAAATCGCCGGTTCG 59.942 57.895 15.77 15.77 44.18 3.95
248 249 1.058284 CGTCGAAAATCGCCGGTTC 59.942 57.895 1.90 0.00 37.61 3.62
249 250 1.620413 GACGTCGAAAATCGCCGGTT 61.620 55.000 1.90 0.00 45.99 4.44
250 251 2.048877 ACGTCGAAAATCGCCGGT 60.049 55.556 1.90 0.00 45.99 5.28
251 252 2.693285 GACGTCGAAAATCGCCGG 59.307 61.111 8.06 0.00 45.99 6.13
253 254 1.012486 ACAGGACGTCGAAAATCGCC 61.012 55.000 9.92 0.00 40.21 5.54
254 255 0.093026 CACAGGACGTCGAAAATCGC 59.907 55.000 9.92 0.00 40.21 4.58
255 256 0.713883 CCACAGGACGTCGAAAATCG 59.286 55.000 9.92 0.00 42.10 3.34
256 257 1.076332 CCCACAGGACGTCGAAAATC 58.924 55.000 9.92 0.00 33.47 2.17
257 258 0.953960 GCCCACAGGACGTCGAAAAT 60.954 55.000 9.92 0.00 33.47 1.82
258 259 1.595929 GCCCACAGGACGTCGAAAA 60.596 57.895 9.92 0.00 33.47 2.29
259 260 2.029964 GCCCACAGGACGTCGAAA 59.970 61.111 9.92 0.00 33.47 3.46
260 261 4.351938 CGCCCACAGGACGTCGAA 62.352 66.667 9.92 0.00 33.47 3.71
275 276 2.841160 AAAAACACCCCAGTCGCGC 61.841 57.895 0.00 0.00 0.00 6.86
276 277 3.427670 AAAAACACCCCAGTCGCG 58.572 55.556 0.00 0.00 0.00 5.87
652 653 3.732849 CCCAACAGCCTCCCTCCC 61.733 72.222 0.00 0.00 0.00 4.30
653 654 3.732849 CCCCAACAGCCTCCCTCC 61.733 72.222 0.00 0.00 0.00 4.30
654 655 3.732849 CCCCCAACAGCCTCCCTC 61.733 72.222 0.00 0.00 0.00 4.30
682 683 0.459489 AGCGGAAGACTCAGAGCATC 59.541 55.000 0.00 0.00 0.00 3.91
683 684 0.901124 AAGCGGAAGACTCAGAGCAT 59.099 50.000 0.00 0.00 0.00 3.79
684 685 0.681733 AAAGCGGAAGACTCAGAGCA 59.318 50.000 0.00 0.00 0.00 4.26
685 686 1.074752 CAAAGCGGAAGACTCAGAGC 58.925 55.000 0.00 0.00 0.00 4.09
686 687 1.719600 CCAAAGCGGAAGACTCAGAG 58.280 55.000 0.00 0.00 36.56 3.35
687 688 0.320771 GCCAAAGCGGAAGACTCAGA 60.321 55.000 0.00 0.00 36.56 3.27
688 689 1.301677 GGCCAAAGCGGAAGACTCAG 61.302 60.000 0.00 0.00 41.24 3.35
689 690 1.302511 GGCCAAAGCGGAAGACTCA 60.303 57.895 0.00 0.00 41.24 3.41
690 691 0.606673 AAGGCCAAAGCGGAAGACTC 60.607 55.000 5.01 0.00 41.24 3.36
691 692 0.606673 GAAGGCCAAAGCGGAAGACT 60.607 55.000 5.01 0.00 41.24 3.24
692 693 1.587043 GGAAGGCCAAAGCGGAAGAC 61.587 60.000 5.01 0.00 41.24 3.01
693 694 1.303317 GGAAGGCCAAAGCGGAAGA 60.303 57.895 5.01 0.00 41.24 2.87
694 695 2.343426 GGGAAGGCCAAAGCGGAAG 61.343 63.158 5.01 0.00 41.24 3.46
695 696 2.282887 GGGAAGGCCAAAGCGGAA 60.283 61.111 5.01 0.00 41.24 4.30
696 697 3.567579 CTGGGAAGGCCAAAGCGGA 62.568 63.158 5.01 0.00 41.24 5.54
697 698 3.064324 CTGGGAAGGCCAAAGCGG 61.064 66.667 5.01 0.00 41.24 5.52
698 699 2.282462 ACTGGGAAGGCCAAAGCG 60.282 61.111 5.01 0.00 41.24 4.68
699 700 2.335712 CGACTGGGAAGGCCAAAGC 61.336 63.158 5.01 0.00 35.15 3.51
700 701 0.035056 ATCGACTGGGAAGGCCAAAG 60.035 55.000 5.01 0.00 35.15 2.77
701 702 1.209504 CTATCGACTGGGAAGGCCAAA 59.790 52.381 5.01 0.00 35.15 3.28
702 703 0.830648 CTATCGACTGGGAAGGCCAA 59.169 55.000 5.01 0.00 35.15 4.52
703 704 1.048724 CCTATCGACTGGGAAGGCCA 61.049 60.000 5.01 0.00 35.15 5.36
704 705 0.759436 TCCTATCGACTGGGAAGGCC 60.759 60.000 0.00 0.00 30.22 5.19
705 706 0.676736 CTCCTATCGACTGGGAAGGC 59.323 60.000 5.79 0.00 33.47 4.35
706 707 2.235016 CTCTCCTATCGACTGGGAAGG 58.765 57.143 5.79 0.00 33.47 3.46
707 708 2.621055 CACTCTCCTATCGACTGGGAAG 59.379 54.545 5.79 6.24 33.47 3.46
708 709 2.241430 TCACTCTCCTATCGACTGGGAA 59.759 50.000 5.79 0.00 33.47 3.97
709 710 1.844497 TCACTCTCCTATCGACTGGGA 59.156 52.381 5.79 4.54 32.74 4.37
710 711 1.950909 GTCACTCTCCTATCGACTGGG 59.049 57.143 5.79 0.37 0.00 4.45
711 712 1.600013 CGTCACTCTCCTATCGACTGG 59.400 57.143 0.00 0.00 0.00 4.00
712 713 1.600013 CCGTCACTCTCCTATCGACTG 59.400 57.143 0.00 0.00 0.00 3.51
713 714 1.485480 TCCGTCACTCTCCTATCGACT 59.515 52.381 0.00 0.00 0.00 4.18
714 715 1.598601 GTCCGTCACTCTCCTATCGAC 59.401 57.143 0.00 0.00 0.00 4.20
715 716 1.485480 AGTCCGTCACTCTCCTATCGA 59.515 52.381 0.00 0.00 0.00 3.59
716 717 1.600013 CAGTCCGTCACTCTCCTATCG 59.400 57.143 0.00 0.00 30.26 2.92
717 718 2.875933 CTCAGTCCGTCACTCTCCTATC 59.124 54.545 0.00 0.00 30.26 2.08
718 719 2.925724 CTCAGTCCGTCACTCTCCTAT 58.074 52.381 0.00 0.00 30.26 2.57
719 720 1.679336 GCTCAGTCCGTCACTCTCCTA 60.679 57.143 0.00 0.00 30.26 2.94
720 721 0.963355 GCTCAGTCCGTCACTCTCCT 60.963 60.000 0.00 0.00 30.26 3.69
721 722 1.509004 GCTCAGTCCGTCACTCTCC 59.491 63.158 0.00 0.00 30.26 3.71
722 723 1.244697 TGGCTCAGTCCGTCACTCTC 61.245 60.000 0.00 0.00 30.26 3.20
723 724 1.228583 TGGCTCAGTCCGTCACTCT 60.229 57.895 0.00 0.00 30.26 3.24
724 725 1.080434 GTGGCTCAGTCCGTCACTC 60.080 63.158 0.00 0.00 30.26 3.51
725 726 2.920645 CGTGGCTCAGTCCGTCACT 61.921 63.158 0.00 0.00 34.67 3.41
726 727 2.430921 CGTGGCTCAGTCCGTCAC 60.431 66.667 0.00 0.00 0.00 3.67
727 728 4.357947 GCGTGGCTCAGTCCGTCA 62.358 66.667 0.00 0.00 0.00 4.35
730 731 2.960957 CTATGGCGTGGCTCAGTCCG 62.961 65.000 0.00 0.00 0.00 4.79
731 732 1.227380 CTATGGCGTGGCTCAGTCC 60.227 63.158 0.00 0.00 0.00 3.85
732 733 1.884926 GCTATGGCGTGGCTCAGTC 60.885 63.158 7.91 0.00 0.00 3.51
733 734 2.187946 GCTATGGCGTGGCTCAGT 59.812 61.111 7.91 0.00 0.00 3.41
734 735 1.886313 CAGCTATGGCGTGGCTCAG 60.886 63.158 15.24 1.10 43.57 3.35
735 736 2.187685 CAGCTATGGCGTGGCTCA 59.812 61.111 15.24 0.00 43.57 4.26
736 737 3.275338 GCAGCTATGGCGTGGCTC 61.275 66.667 15.24 6.67 43.57 4.70
737 738 4.100084 TGCAGCTATGGCGTGGCT 62.100 61.111 12.23 12.23 46.75 4.75
738 739 3.580193 CTGCAGCTATGGCGTGGC 61.580 66.667 6.99 6.99 44.37 5.01
739 740 3.580193 GCTGCAGCTATGGCGTGG 61.580 66.667 31.33 0.00 44.37 4.94
749 750 1.246056 TTGGACCAATCAGCTGCAGC 61.246 55.000 31.53 31.53 42.49 5.25
750 751 0.524862 GTTGGACCAATCAGCTGCAG 59.475 55.000 10.83 10.11 0.00 4.41
751 752 0.111061 AGTTGGACCAATCAGCTGCA 59.889 50.000 10.83 0.00 0.00 4.41
752 753 1.068055 CAAGTTGGACCAATCAGCTGC 60.068 52.381 10.83 0.00 0.00 5.25
753 754 1.542915 CCAAGTTGGACCAATCAGCTG 59.457 52.381 17.60 7.63 40.96 4.24
754 755 1.145738 ACCAAGTTGGACCAATCAGCT 59.854 47.619 28.80 0.00 40.96 4.24
755 756 1.270550 CACCAAGTTGGACCAATCAGC 59.729 52.381 28.80 0.00 40.96 4.26
756 757 2.294233 CACACCAAGTTGGACCAATCAG 59.706 50.000 28.80 9.26 40.96 2.90
757 758 2.305928 CACACCAAGTTGGACCAATCA 58.694 47.619 28.80 0.00 40.96 2.57
758 759 1.000274 GCACACCAAGTTGGACCAATC 60.000 52.381 28.80 8.17 40.96 2.67
759 760 1.039856 GCACACCAAGTTGGACCAAT 58.960 50.000 28.80 2.10 40.96 3.16
760 761 1.380403 CGCACACCAAGTTGGACCAA 61.380 55.000 28.80 1.69 40.96 3.67
761 762 1.821759 CGCACACCAAGTTGGACCA 60.822 57.895 28.80 0.00 40.96 4.02
762 763 1.822186 ACGCACACCAAGTTGGACC 60.822 57.895 28.80 11.48 40.96 4.46
763 764 1.355210 CACGCACACCAAGTTGGAC 59.645 57.895 28.80 12.90 40.96 4.02
764 765 1.078072 ACACGCACACCAAGTTGGA 60.078 52.632 28.80 0.00 40.96 3.53
765 766 1.063972 CACACGCACACCAAGTTGG 59.936 57.895 20.76 20.76 45.02 3.77
766 767 0.523125 CACACACGCACACCAAGTTG 60.523 55.000 0.00 0.00 0.00 3.16
767 768 1.800032 CACACACGCACACCAAGTT 59.200 52.632 0.00 0.00 0.00 2.66
768 769 2.760159 GCACACACGCACACCAAGT 61.760 57.895 0.00 0.00 0.00 3.16
769 770 2.024588 GCACACACGCACACCAAG 59.975 61.111 0.00 0.00 0.00 3.61
770 771 3.870422 CGCACACACGCACACCAA 61.870 61.111 0.00 0.00 0.00 3.67
772 773 4.589700 CACGCACACACGCACACC 62.590 66.667 0.00 0.00 36.19 4.16
773 774 3.767066 GACACGCACACACGCACAC 62.767 63.158 0.00 0.00 36.19 3.82
774 775 3.559344 GACACGCACACACGCACA 61.559 61.111 0.00 0.00 36.19 4.57
775 776 4.293626 GGACACGCACACACGCAC 62.294 66.667 0.00 0.00 36.19 5.34
778 779 3.215597 TAGGGGACACGCACACACG 62.216 63.158 0.00 0.00 39.50 4.49
779 780 1.666872 GTAGGGGACACGCACACAC 60.667 63.158 0.00 0.00 0.00 3.82
780 781 1.687297 TTGTAGGGGACACGCACACA 61.687 55.000 0.00 0.00 37.96 3.72
781 782 0.949105 CTTGTAGGGGACACGCACAC 60.949 60.000 0.00 0.00 37.96 3.82
782 783 1.116536 TCTTGTAGGGGACACGCACA 61.117 55.000 0.00 0.00 37.96 4.57
783 784 0.669625 GTCTTGTAGGGGACACGCAC 60.670 60.000 0.00 0.00 37.96 5.34
784 785 1.116536 TGTCTTGTAGGGGACACGCA 61.117 55.000 0.00 0.00 37.96 5.24
785 786 1.669440 TGTCTTGTAGGGGACACGC 59.331 57.895 0.00 0.00 37.96 5.34
788 789 1.823169 GCCGTGTCTTGTAGGGGACA 61.823 60.000 0.00 0.00 39.71 4.02
789 790 1.079336 GCCGTGTCTTGTAGGGGAC 60.079 63.158 0.00 0.00 0.00 4.46
790 791 0.907704 ATGCCGTGTCTTGTAGGGGA 60.908 55.000 0.00 0.00 0.00 4.81
791 792 0.462047 GATGCCGTGTCTTGTAGGGG 60.462 60.000 0.00 0.00 0.00 4.79
792 793 0.462047 GGATGCCGTGTCTTGTAGGG 60.462 60.000 0.00 0.00 0.00 3.53
793 794 0.806102 CGGATGCCGTGTCTTGTAGG 60.806 60.000 0.00 0.00 42.73 3.18
794 795 0.806102 CCGGATGCCGTGTCTTGTAG 60.806 60.000 0.00 0.00 46.80 2.74
795 796 1.216977 CCGGATGCCGTGTCTTGTA 59.783 57.895 0.00 0.00 46.80 2.41
796 797 2.047274 CCGGATGCCGTGTCTTGT 60.047 61.111 0.00 0.00 46.80 3.16
797 798 2.047274 ACCGGATGCCGTGTCTTG 60.047 61.111 9.46 0.00 46.80 3.02
798 799 2.047274 CACCGGATGCCGTGTCTT 60.047 61.111 9.46 0.00 46.80 3.01
799 800 2.107041 TTTCACCGGATGCCGTGTCT 62.107 55.000 9.46 0.00 46.80 3.41
800 801 1.024579 ATTTCACCGGATGCCGTGTC 61.025 55.000 9.46 0.00 46.80 3.67
801 802 1.002624 ATTTCACCGGATGCCGTGT 60.003 52.632 9.46 0.06 46.80 4.49
802 803 1.305219 ACATTTCACCGGATGCCGTG 61.305 55.000 9.46 1.93 46.80 4.94
803 804 0.250793 TACATTTCACCGGATGCCGT 59.749 50.000 9.46 0.00 46.80 5.68
805 806 0.655733 CGTACATTTCACCGGATGCC 59.344 55.000 9.46 0.00 0.00 4.40
806 807 1.647346 TCGTACATTTCACCGGATGC 58.353 50.000 9.46 0.00 0.00 3.91
816 817 3.695830 AGGTGTGGTCATCGTACATTT 57.304 42.857 0.00 0.00 0.00 2.32
819 820 1.606994 GCAAGGTGTGGTCATCGTACA 60.607 52.381 0.00 0.00 0.00 2.90
820 821 1.076332 GCAAGGTGTGGTCATCGTAC 58.924 55.000 0.00 0.00 0.00 3.67
829 832 2.839486 TCAGTTAGAGCAAGGTGTGG 57.161 50.000 0.00 0.00 0.00 4.17
830 833 3.438087 CCAATCAGTTAGAGCAAGGTGTG 59.562 47.826 0.00 0.00 0.00 3.82
831 834 3.679389 CCAATCAGTTAGAGCAAGGTGT 58.321 45.455 0.00 0.00 0.00 4.16
836 839 1.086696 GCGCCAATCAGTTAGAGCAA 58.913 50.000 0.00 0.00 0.00 3.91
854 857 0.895100 TTGGGTGATGCTCCAGTTGC 60.895 55.000 0.00 0.00 34.17 4.17
858 861 1.379044 GGGTTGGGTGATGCTCCAG 60.379 63.158 0.00 0.00 34.17 3.86
859 862 1.724148 TTGGGTTGGGTGATGCTCCA 61.724 55.000 0.00 0.00 0.00 3.86
862 865 0.188342 ACTTTGGGTTGGGTGATGCT 59.812 50.000 0.00 0.00 0.00 3.79
888 891 2.112815 GCCGTGTCTTGTATGGGCC 61.113 63.158 0.00 0.00 34.54 5.80
893 896 1.086696 GCATGTGCCGTGTCTTGTAT 58.913 50.000 0.00 0.00 34.31 2.29
927 937 2.048877 GGCATGGCAAGTGTGTGC 60.049 61.111 15.47 0.00 44.14 4.57
1007 1024 3.535561 GTTAGCAAGAGGAAGCATGCTA 58.464 45.455 23.00 0.00 46.61 3.49
1012 1029 2.305635 TGATGGTTAGCAAGAGGAAGCA 59.694 45.455 0.00 0.00 35.28 3.91
1034 1051 2.435805 CTGGCTGTTGCTAGGAATAGGA 59.564 50.000 19.68 0.00 42.99 2.94
1035 1052 2.843701 CTGGCTGTTGCTAGGAATAGG 58.156 52.381 19.68 6.24 42.99 2.57
1036 1053 2.216898 GCTGGCTGTTGCTAGGAATAG 58.783 52.381 15.11 15.11 46.16 1.73
1037 1054 1.559219 TGCTGGCTGTTGCTAGGAATA 59.441 47.619 0.00 0.00 44.15 1.75
1038 1055 0.329261 TGCTGGCTGTTGCTAGGAAT 59.671 50.000 0.00 0.00 44.15 3.01
1039 1056 0.321919 CTGCTGGCTGTTGCTAGGAA 60.322 55.000 0.00 0.00 46.03 3.36
1047 1064 2.908940 GTGGTGCTGCTGGCTGTT 60.909 61.111 0.00 0.00 42.39 3.16
1058 1075 2.930562 AGGAGGAGGTGGTGGTGC 60.931 66.667 0.00 0.00 0.00 5.01
1191 1214 0.958091 TATGTGCACCTTGTTGCCAC 59.042 50.000 15.69 0.00 42.25 5.01
1197 1220 0.394938 TGTCCGTATGTGCACCTTGT 59.605 50.000 15.69 0.16 0.00 3.16
1208 1231 1.447838 CGGCAGCAGTTGTCCGTAT 60.448 57.895 10.55 0.00 39.81 3.06
1209 1232 2.048597 CGGCAGCAGTTGTCCGTA 60.049 61.111 10.55 0.00 39.81 4.02
1210 1233 4.988598 CCGGCAGCAGTTGTCCGT 62.989 66.667 15.32 0.00 41.70 4.69
1211 1234 4.988598 ACCGGCAGCAGTTGTCCG 62.989 66.667 0.00 11.43 42.39 4.79
1212 1235 3.357079 CACCGGCAGCAGTTGTCC 61.357 66.667 0.00 0.00 0.00 4.02
1213 1236 3.357079 CCACCGGCAGCAGTTGTC 61.357 66.667 0.00 0.00 0.00 3.18
1266 1289 2.777832 AGTGGAGGTCAAGCTTGATC 57.222 50.000 30.65 29.72 39.73 2.92
1368 1521 2.890847 ATTTGAGGCGTCGGAGAGCG 62.891 60.000 1.39 0.00 36.95 5.03
1386 1660 4.475345 AGTTCTGGCTAAGGTCGAGATAT 58.525 43.478 0.00 0.00 0.00 1.63
1430 1704 0.251341 GCCCAAGAATCCCGGCATAT 60.251 55.000 0.00 0.00 41.25 1.78
1485 1763 1.272147 ACTCTGCCCTGAAAACCCATC 60.272 52.381 0.00 0.00 0.00 3.51
1543 1821 6.127925 CCCATAATATTGCGCTGTATGTCAAT 60.128 38.462 9.73 0.00 34.08 2.57
1566 1844 0.250166 AGTATTGATAACCGGCGCCC 60.250 55.000 23.46 5.93 0.00 6.13
1588 1866 2.157668 GCGCCAACCAAGATATATCGTG 59.842 50.000 18.50 18.50 36.29 4.35
1632 1910 1.097547 GGTCGATCCAGCCCATGTTG 61.098 60.000 0.00 0.00 35.97 3.33
1682 1960 0.098728 CAAATTAGGAAGTGCGCCGG 59.901 55.000 4.18 0.00 0.00 6.13
1876 2155 3.620488 ACGTGCCTGATAATCCACAATT 58.380 40.909 0.00 0.00 0.00 2.32
1900 2179 4.134563 GTCAAGTTTCCCAGCTTGTTAGA 58.865 43.478 0.00 0.00 41.83 2.10
2026 2306 5.008415 CCTCTTTTATGTCCATGCTGATGTC 59.992 44.000 0.00 0.00 0.00 3.06
2128 2408 7.095816 GGTTAGGTTTGACACAAATTGTAATGC 60.096 37.037 0.00 0.00 39.17 3.56
2175 6250 1.608590 CCGCTCAATTGGTTGTGACTT 59.391 47.619 5.42 0.00 36.69 3.01
2266 6341 1.548357 ATCTCAACGGGCACTGAGCT 61.548 55.000 0.33 0.00 44.79 4.09
2268 6343 1.081892 CAATCTCAACGGGCACTGAG 58.918 55.000 0.00 0.00 40.42 3.35
2277 6352 2.805671 TGTAAGTGTGCCAATCTCAACG 59.194 45.455 0.00 0.00 0.00 4.10
2280 6355 6.040278 TCAATTTTGTAAGTGTGCCAATCTCA 59.960 34.615 0.00 0.00 31.55 3.27
2301 6376 5.578157 ACCCAAGGTGTAAGTAAGTCAAT 57.422 39.130 0.00 0.00 32.98 2.57
2314 6389 2.757868 TCAAGTTGTTGAACCCAAGGTG 59.242 45.455 2.11 0.00 39.85 4.00
2323 6398 2.159310 CCAAACCGCTCAAGTTGTTGAA 60.159 45.455 2.11 0.00 42.27 2.69
2324 6399 1.403679 CCAAACCGCTCAAGTTGTTGA 59.596 47.619 2.11 0.00 40.55 3.18
2549 6627 2.082140 AGGAAACTTGGGACCCAAAC 57.918 50.000 26.15 16.53 43.44 2.93
2653 6731 4.094442 CCATGTAACTTCGGAAAAGGTAGC 59.906 45.833 0.00 0.00 0.00 3.58
2690 6768 0.651031 GTCGCCGCTTAGTTGATTCC 59.349 55.000 0.00 0.00 0.00 3.01
2716 6794 3.755378 ACTGACATGAACTCCAGATTTGC 59.245 43.478 0.00 0.00 0.00 3.68
2717 6795 4.999311 TCACTGACATGAACTCCAGATTTG 59.001 41.667 0.00 0.00 0.00 2.32
2718 6796 5.233083 TCACTGACATGAACTCCAGATTT 57.767 39.130 0.00 0.00 0.00 2.17
2881 6962 5.473504 GTCCCGATATAGCATTGGAAAACAT 59.526 40.000 0.00 0.00 0.00 2.71
2915 6997 3.906014 TTCCGCAATCGACAAATTGAA 57.094 38.095 0.00 0.00 38.64 2.69
2960 7042 6.603201 CAGGAAGTCCCTTTGAAAGCATATTA 59.397 38.462 0.00 0.00 44.85 0.98
2964 7046 3.160269 CAGGAAGTCCCTTTGAAAGCAT 58.840 45.455 0.00 0.00 44.85 3.79
3009 7091 0.482446 TTGCCAGATGGGTTCCACTT 59.518 50.000 0.12 0.00 35.80 3.16
3031 7113 7.132863 ACTCACTGAAACGAATTTTAAAGAGC 58.867 34.615 0.00 0.00 0.00 4.09
3037 7119 8.670135 TGAAAGAACTCACTGAAACGAATTTTA 58.330 29.630 0.00 0.00 0.00 1.52
3090 7172 5.240891 TCCACTTGAAAAATTGTTGTTGCA 58.759 33.333 0.00 0.00 0.00 4.08
3119 7201 2.271800 GGACATTGTCGTAGGAGCAAG 58.728 52.381 10.56 3.29 32.65 4.01
3191 7273 3.749954 GCATGGCTTCACTAATCCATCCT 60.750 47.826 0.00 0.00 39.13 3.24
3404 7498 7.439655 GTGATACTATTCTCACCACTTTCATCC 59.560 40.741 0.00 0.00 36.59 3.51
3407 7501 7.178451 TCAGTGATACTATTCTCACCACTTTCA 59.822 37.037 0.00 0.00 42.18 2.69
3423 7517 9.845214 ATTAACCCTTCCTATATCAGTGATACT 57.155 33.333 15.07 7.48 0.00 2.12
3442 7536 3.498397 CACCGTGATGCTATCATTAACCC 59.502 47.826 0.00 0.00 42.04 4.11
3481 7578 0.466189 ATTGGCCCCATACTCAAGCG 60.466 55.000 0.00 0.00 0.00 4.68
3564 7661 2.038557 TGAGACCAACAAGGGAGCTTAC 59.961 50.000 0.00 0.00 43.89 2.34
3762 7866 1.271840 TGCCCTGCGGGTATTCTTCT 61.272 55.000 11.58 0.00 46.51 2.85
3774 7878 1.375908 TGTCGAGTTGATGCCCTGC 60.376 57.895 0.00 0.00 0.00 4.85
3826 7930 3.012518 CCACAAAGAGCAGGATTACCAG 58.987 50.000 0.00 0.00 38.94 4.00
3892 7996 0.400213 TGCTGGATCTCCGTTGGTTT 59.600 50.000 0.00 0.00 39.43 3.27
3921 8025 2.353889 CCATTTGAGACAAGCCATCTCG 59.646 50.000 5.33 0.00 44.76 4.04
3922 8026 3.614092 TCCATTTGAGACAAGCCATCTC 58.386 45.455 3.14 3.14 42.57 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.