Multiple sequence alignment - TraesCS1D01G449200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G449200 chr1D 100.000 5860 0 0 1 5860 491631411 491637270 0.000000e+00 10822.0
1 TraesCS1D01G449200 chr1D 88.150 692 66 12 1 688 342625025 342625704 0.000000e+00 809.0
2 TraesCS1D01G449200 chr1D 88.382 680 66 12 1 675 28816133 28816804 0.000000e+00 806.0
3 TraesCS1D01G449200 chr1D 88.410 673 66 8 6 674 290426220 290426884 0.000000e+00 800.0
4 TraesCS1D01G449200 chr1D 80.737 353 47 11 1430 1774 244172678 244173017 7.540000e-64 255.0
5 TraesCS1D01G449200 chr1B 91.356 2927 155 43 790 3663 683572382 683575263 0.000000e+00 3914.0
6 TraesCS1D01G449200 chr1B 92.547 1127 55 20 4227 5339 683576061 683577172 0.000000e+00 1589.0
7 TraesCS1D01G449200 chr1B 95.692 441 18 1 5421 5860 683577171 683577611 0.000000e+00 708.0
8 TraesCS1D01G449200 chr1B 88.943 407 31 5 4928 5322 683580522 683580926 1.900000e-134 490.0
9 TraesCS1D01G449200 chr1B 83.268 508 50 17 1861 2363 683586409 683586886 9.020000e-118 435.0
10 TraesCS1D01G449200 chr1B 86.914 405 23 17 1955 2358 641930923 641930548 1.510000e-115 427.0
11 TraesCS1D01G449200 chr1B 86.071 280 29 6 3837 4111 683575479 683575753 5.740000e-75 292.0
12 TraesCS1D01G449200 chr1B 92.857 126 7 1 4105 4228 683575776 683575901 1.300000e-41 182.0
13 TraesCS1D01G449200 chr1B 94.805 77 4 0 3733 3809 683575248 683575324 2.870000e-23 121.0
14 TraesCS1D01G449200 chr1B 89.286 56 3 1 3758 3810 634281945 634282000 3.790000e-07 67.6
15 TraesCS1D01G449200 chr1A 89.477 3022 201 60 706 3661 589439947 589442917 0.000000e+00 3711.0
16 TraesCS1D01G449200 chr1A 93.103 928 60 3 4257 5180 589443434 589444361 0.000000e+00 1356.0
17 TraesCS1D01G449200 chr1A 86.304 1285 94 34 4518 5768 589497576 589498812 0.000000e+00 1323.0
18 TraesCS1D01G449200 chr1A 94.103 780 42 4 4563 5341 589450765 589451541 0.000000e+00 1182.0
19 TraesCS1D01G449200 chr1A 91.065 291 21 4 5570 5858 589476550 589476837 7.120000e-104 388.0
20 TraesCS1D01G449200 chr1A 90.942 276 21 3 5585 5858 589444894 589445167 9.280000e-98 368.0
21 TraesCS1D01G449200 chr1A 82.030 473 29 24 5421 5860 589451541 589451990 9.340000e-93 351.0
22 TraesCS1D01G449200 chr1A 89.209 278 26 3 3836 4111 589443034 589443309 1.560000e-90 344.0
23 TraesCS1D01G449200 chr1A 84.583 240 33 3 1435 1674 41796408 41796173 9.820000e-58 235.0
24 TraesCS1D01G449200 chr1A 92.025 163 9 1 4522 4680 589476393 589476555 5.910000e-55 226.0
25 TraesCS1D01G449200 chr1A 95.745 94 4 0 5336 5429 497890464 497890557 1.020000e-32 152.0
26 TraesCS1D01G449200 chr1A 93.878 98 6 0 5338 5435 589793252 589793155 1.320000e-31 148.0
27 TraesCS1D01G449200 chr1A 92.308 104 5 3 5335 5436 86242787 86242685 1.700000e-30 145.0
28 TraesCS1D01G449200 chr1A 97.500 40 1 0 5555 5594 8006996 8007035 1.050000e-07 69.4
29 TraesCS1D01G449200 chr5B 90.078 2550 171 46 1142 3663 298689029 298686534 0.000000e+00 3232.0
30 TraesCS1D01G449200 chr5B 91.822 269 13 3 1558 1817 621789832 621789564 3.340000e-97 366.0
31 TraesCS1D01G449200 chr5B 91.667 84 6 1 3729 3811 298686554 298686471 1.330000e-21 115.0
32 TraesCS1D01G449200 chr4A 90.545 1946 132 24 1724 3663 340790266 340792165 0.000000e+00 2527.0
33 TraesCS1D01G449200 chr4A 89.951 607 40 10 1558 2160 588877514 588878103 0.000000e+00 763.0
34 TraesCS1D01G449200 chr4A 91.005 567 33 13 1142 1698 340789636 340790194 0.000000e+00 749.0
35 TraesCS1D01G449200 chr4A 95.699 93 4 0 5338 5430 661959873 661959781 3.660000e-32 150.0
36 TraesCS1D01G449200 chr4A 92.857 84 5 1 3729 3811 340792145 340792228 2.870000e-23 121.0
37 TraesCS1D01G449200 chr7A 92.674 778 52 5 2889 3663 713947199 713947974 0.000000e+00 1116.0
38 TraesCS1D01G449200 chr7A 87.160 405 24 3 1954 2358 55193193 55192817 9.020000e-118 435.0
39 TraesCS1D01G449200 chr7A 92.857 84 5 1 3729 3811 713947954 713948037 2.870000e-23 121.0
40 TraesCS1D01G449200 chr7A 85.106 94 7 2 5515 5601 67001001 67001094 8.090000e-14 89.8
41 TraesCS1D01G449200 chr7A 84.043 94 8 2 5515 5601 66985203 66985296 3.760000e-12 84.2
42 TraesCS1D01G449200 chr7A 84.043 94 8 3 5515 5601 67280043 67280136 3.760000e-12 84.2
43 TraesCS1D01G449200 chr7B 83.615 1184 129 39 864 2013 42367324 42368476 0.000000e+00 1051.0
44 TraesCS1D01G449200 chr7B 86.173 405 27 15 1955 2358 63706250 63705874 1.520000e-110 411.0
45 TraesCS1D01G449200 chr2D 87.648 842 61 24 1197 2009 648846647 648847474 0.000000e+00 939.0
46 TraesCS1D01G449200 chr2D 87.415 739 62 23 1229 1946 100848149 100847421 0.000000e+00 821.0
47 TraesCS1D01G449200 chr2D 88.609 676 67 7 3 674 374424104 374423435 0.000000e+00 813.0
48 TraesCS1D01G449200 chr2D 88.064 687 68 11 6 687 325822425 325821748 0.000000e+00 802.0
49 TraesCS1D01G449200 chr2A 89.039 666 62 8 14 675 103386499 103385841 0.000000e+00 815.0
50 TraesCS1D01G449200 chr2A 88.348 678 66 10 1 674 401181864 401182532 0.000000e+00 802.0
51 TraesCS1D01G449200 chr5D 87.901 686 71 11 6 688 474734003 474734679 0.000000e+00 797.0
52 TraesCS1D01G449200 chr5D 91.304 460 27 9 1197 1648 434898565 434898111 3.000000e-172 616.0
53 TraesCS1D01G449200 chr5D 89.783 460 34 9 1197 1648 449435917 449435463 1.420000e-160 577.0
54 TraesCS1D01G449200 chr5D 100.000 29 0 0 5567 5595 232194521 232194493 3.000000e-03 54.7
55 TraesCS1D01G449200 chr3D 87.883 685 70 10 6 687 149201204 149200530 0.000000e+00 793.0
56 TraesCS1D01G449200 chr3D 87.086 604 50 20 1078 1663 588637992 588637399 0.000000e+00 658.0
57 TraesCS1D01G449200 chr3D 86.000 600 55 21 1082 1663 432912484 432913072 3.000000e-172 616.0
58 TraesCS1D01G449200 chr3D 90.024 411 26 9 1558 1958 564479851 564479446 8.700000e-143 518.0
59 TraesCS1D01G449200 chr3D 87.901 405 21 3 1954 2358 564479300 564478924 8.950000e-123 451.0
60 TraesCS1D01G449200 chr3D 95.789 95 4 0 5338 5432 153849588 153849494 2.830000e-33 154.0
61 TraesCS1D01G449200 chr7D 87.521 601 51 20 1078 1663 618996972 618997563 0.000000e+00 673.0
62 TraesCS1D01G449200 chr7D 90.549 455 29 10 1202 1648 470591449 470591897 1.820000e-164 590.0
63 TraesCS1D01G449200 chr7D 81.481 351 44 7 1438 1779 554888628 554888290 9.680000e-68 268.0
64 TraesCS1D01G449200 chr7D 85.526 76 6 3 5514 5589 220647244 220647314 2.260000e-09 75.0
65 TraesCS1D01G449200 chr6B 89.294 411 29 9 1558 1958 418731268 418730863 8.770000e-138 501.0
66 TraesCS1D01G449200 chr6B 84.956 339 33 14 1681 2009 711530640 711530310 1.570000e-85 327.0
67 TraesCS1D01G449200 chr6B 83.673 245 32 6 1432 1674 36325376 36325614 2.130000e-54 224.0
68 TraesCS1D01G449200 chr2B 88.321 411 33 10 1558 1958 750473296 750473701 4.110000e-131 479.0
69 TraesCS1D01G449200 chr2B 87.407 405 22 4 1955 2358 750473839 750474215 6.970000e-119 438.0
70 TraesCS1D01G449200 chr2B 84.711 242 29 6 1435 1674 25164550 25164315 9.820000e-58 235.0
71 TraesCS1D01G449200 chr2B 83.158 95 7 6 5510 5596 25122669 25122576 1.750000e-10 78.7
72 TraesCS1D01G449200 chr2B 82.955 88 8 5 5511 5591 184971391 184971478 8.150000e-09 73.1
73 TraesCS1D01G449200 chr6A 87.160 405 24 9 1954 2358 54395103 54394727 9.020000e-118 435.0
74 TraesCS1D01G449200 chr6A 93.814 97 6 0 5334 5430 262052046 262052142 4.730000e-31 147.0
75 TraesCS1D01G449200 chr6A 97.500 40 1 0 5555 5594 22159299 22159338 1.050000e-07 69.4
76 TraesCS1D01G449200 chr5A 82.857 245 34 6 1432 1674 144656398 144656636 4.600000e-51 213.0
77 TraesCS1D01G449200 chr4B 94.845 97 4 1 5335 5430 610796098 610796194 3.660000e-32 150.0
78 TraesCS1D01G449200 chr6D 93.814 97 6 0 5334 5430 221219312 221219408 4.730000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G449200 chr1D 491631411 491637270 5859 False 10822.000000 10822 100.00000 1 5860 1 chr1D.!!$F5 5859
1 TraesCS1D01G449200 chr1D 342625025 342625704 679 False 809.000000 809 88.15000 1 688 1 chr1D.!!$F4 687
2 TraesCS1D01G449200 chr1D 28816133 28816804 671 False 806.000000 806 88.38200 1 675 1 chr1D.!!$F1 674
3 TraesCS1D01G449200 chr1D 290426220 290426884 664 False 800.000000 800 88.41000 6 674 1 chr1D.!!$F3 668
4 TraesCS1D01G449200 chr1B 683572382 683580926 8544 False 1042.285714 3914 91.75300 790 5860 7 chr1B.!!$F3 5070
5 TraesCS1D01G449200 chr1A 589439947 589445167 5220 False 1444.750000 3711 90.68275 706 5858 4 chr1A.!!$F4 5152
6 TraesCS1D01G449200 chr1A 589497576 589498812 1236 False 1323.000000 1323 86.30400 4518 5768 1 chr1A.!!$F3 1250
7 TraesCS1D01G449200 chr1A 589450765 589451990 1225 False 766.500000 1182 88.06650 4563 5860 2 chr1A.!!$F5 1297
8 TraesCS1D01G449200 chr5B 298686471 298689029 2558 True 1673.500000 3232 90.87250 1142 3811 2 chr5B.!!$R2 2669
9 TraesCS1D01G449200 chr4A 340789636 340792228 2592 False 1132.333333 2527 91.46900 1142 3811 3 chr4A.!!$F2 2669
10 TraesCS1D01G449200 chr4A 588877514 588878103 589 False 763.000000 763 89.95100 1558 2160 1 chr4A.!!$F1 602
11 TraesCS1D01G449200 chr7A 713947199 713948037 838 False 618.500000 1116 92.76550 2889 3811 2 chr7A.!!$F4 922
12 TraesCS1D01G449200 chr7B 42367324 42368476 1152 False 1051.000000 1051 83.61500 864 2013 1 chr7B.!!$F1 1149
13 TraesCS1D01G449200 chr2D 648846647 648847474 827 False 939.000000 939 87.64800 1197 2009 1 chr2D.!!$F1 812
14 TraesCS1D01G449200 chr2D 100847421 100848149 728 True 821.000000 821 87.41500 1229 1946 1 chr2D.!!$R1 717
15 TraesCS1D01G449200 chr2D 374423435 374424104 669 True 813.000000 813 88.60900 3 674 1 chr2D.!!$R3 671
16 TraesCS1D01G449200 chr2D 325821748 325822425 677 True 802.000000 802 88.06400 6 687 1 chr2D.!!$R2 681
17 TraesCS1D01G449200 chr2A 103385841 103386499 658 True 815.000000 815 89.03900 14 675 1 chr2A.!!$R1 661
18 TraesCS1D01G449200 chr2A 401181864 401182532 668 False 802.000000 802 88.34800 1 674 1 chr2A.!!$F1 673
19 TraesCS1D01G449200 chr5D 474734003 474734679 676 False 797.000000 797 87.90100 6 688 1 chr5D.!!$F1 682
20 TraesCS1D01G449200 chr3D 149200530 149201204 674 True 793.000000 793 87.88300 6 687 1 chr3D.!!$R1 681
21 TraesCS1D01G449200 chr3D 588637399 588637992 593 True 658.000000 658 87.08600 1078 1663 1 chr3D.!!$R3 585
22 TraesCS1D01G449200 chr3D 432912484 432913072 588 False 616.000000 616 86.00000 1082 1663 1 chr3D.!!$F1 581
23 TraesCS1D01G449200 chr3D 564478924 564479851 927 True 484.500000 518 88.96250 1558 2358 2 chr3D.!!$R4 800
24 TraesCS1D01G449200 chr7D 618996972 618997563 591 False 673.000000 673 87.52100 1078 1663 1 chr7D.!!$F3 585
25 TraesCS1D01G449200 chr2B 750473296 750474215 919 False 458.500000 479 87.86400 1558 2358 2 chr2B.!!$F2 800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 647 0.536687 TGGAGACCGAACACGAGTCT 60.537 55.0 0.00 0.00 38.85 3.24 F
1374 1476 0.179100 ACATCTTCATCGAGGGCGTG 60.179 55.0 0.00 0.00 38.98 5.34 F
2761 3303 0.039617 GAGATCTCGCCATCACGGAG 60.040 60.0 7.04 0.00 36.56 4.63 F
3700 4249 1.118838 TGGGACCAAAGGCTTTGTTG 58.881 50.0 31.68 22.18 38.98 3.33 F
3701 4250 1.119684 GGGACCAAAGGCTTTGTTGT 58.880 50.0 31.68 24.78 38.98 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 2628 0.178906 TGTGATGAGGGGTGGAGACA 60.179 55.000 0.00 0.00 38.70 3.41 R
3083 3626 0.460284 CATGGAGTACTGCCACCGTC 60.460 60.000 12.28 0.00 38.44 4.79 R
3974 4654 0.603065 AGAAAACAAAGGGGATGCGC 59.397 50.000 0.00 0.00 0.00 6.09 R
4756 5649 1.118838 GGATCTCCAGTAGCTGCTGT 58.881 55.000 27.15 11.35 34.84 4.40 R
4940 5834 1.154413 CATTATTGATCGGCGCGGC 60.154 57.895 24.49 24.49 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.305386 TGATGACATTGGAGTATCTAGGTGG 59.695 44.000 0.00 0.00 33.73 4.61
70 71 7.582352 CATTAGAGTTGGTTGATGCATATCAG 58.418 38.462 0.00 0.00 43.76 2.90
244 247 4.404394 TCTTTGTCGCATGTAGAGGGATTA 59.596 41.667 0.00 0.00 0.00 1.75
298 301 8.293699 TGAGAGATTGCAGTAGTGAAAGTATA 57.706 34.615 0.42 0.00 0.00 1.47
326 330 5.357878 CCTATGCCTTGTTTCTAAGCATTGA 59.642 40.000 0.66 0.00 31.61 2.57
342 346 5.713025 AGCATTGAAATATCGTTTGTGCTT 58.287 33.333 0.00 0.00 37.11 3.91
365 369 6.189677 TCGTTTTATCATTTGCTACCTTGG 57.810 37.500 0.00 0.00 0.00 3.61
438 442 3.079578 ACTTGTATCACCGTCTCTTCGA 58.920 45.455 0.00 0.00 0.00 3.71
542 548 5.246981 TGTTTGAGAGGACCATCTTCATT 57.753 39.130 0.00 0.00 0.00 2.57
570 576 4.706962 GCCTCCCACAGATTGATAAAACTT 59.293 41.667 0.00 0.00 0.00 2.66
582 588 9.927081 AGATTGATAAAACTTTAGGTCATCCAT 57.073 29.630 0.00 0.00 35.89 3.41
626 633 4.761739 CCTACAAAATTCTGCACTTGGAGA 59.238 41.667 0.00 0.00 40.83 3.71
629 636 1.813513 AATTCTGCACTTGGAGACCG 58.186 50.000 0.00 0.00 42.27 4.79
640 647 0.536687 TGGAGACCGAACACGAGTCT 60.537 55.000 0.00 0.00 38.85 3.24
641 648 1.271001 TGGAGACCGAACACGAGTCTA 60.271 52.381 0.00 0.00 37.53 2.59
642 649 1.130186 GGAGACCGAACACGAGTCTAC 59.870 57.143 0.00 0.00 37.53 2.59
643 650 1.802960 GAGACCGAACACGAGTCTACA 59.197 52.381 0.00 0.00 37.53 2.74
644 651 2.419324 GAGACCGAACACGAGTCTACAT 59.581 50.000 0.00 0.00 37.53 2.29
650 657 4.919168 CCGAACACGAGTCTACATTACAAA 59.081 41.667 0.00 0.00 0.00 2.83
678 686 6.642707 AGTTGTATAGTAGACATCAGAGCC 57.357 41.667 8.33 0.00 0.00 4.70
679 687 5.536916 AGTTGTATAGTAGACATCAGAGCCC 59.463 44.000 8.33 0.00 0.00 5.19
680 688 5.326283 TGTATAGTAGACATCAGAGCCCT 57.674 43.478 0.00 0.00 0.00 5.19
681 689 5.706447 TGTATAGTAGACATCAGAGCCCTT 58.294 41.667 0.00 0.00 0.00 3.95
682 690 5.770663 TGTATAGTAGACATCAGAGCCCTTC 59.229 44.000 0.00 0.00 0.00 3.46
683 691 3.396685 AGTAGACATCAGAGCCCTTCT 57.603 47.619 0.00 0.00 36.25 2.85
684 692 3.718723 AGTAGACATCAGAGCCCTTCTT 58.281 45.455 0.00 0.00 32.41 2.52
685 693 3.704061 AGTAGACATCAGAGCCCTTCTTC 59.296 47.826 0.00 0.00 32.41 2.87
686 694 2.831565 AGACATCAGAGCCCTTCTTCT 58.168 47.619 0.00 0.00 32.41 2.85
687 695 3.987745 AGACATCAGAGCCCTTCTTCTA 58.012 45.455 0.00 0.00 32.41 2.10
688 696 4.555689 AGACATCAGAGCCCTTCTTCTAT 58.444 43.478 0.00 0.00 32.41 1.98
689 697 5.710646 AGACATCAGAGCCCTTCTTCTATA 58.289 41.667 0.00 0.00 32.41 1.31
690 698 6.139671 AGACATCAGAGCCCTTCTTCTATAA 58.860 40.000 0.00 0.00 32.41 0.98
691 699 6.613271 AGACATCAGAGCCCTTCTTCTATAAA 59.387 38.462 0.00 0.00 32.41 1.40
692 700 7.126421 AGACATCAGAGCCCTTCTTCTATAAAA 59.874 37.037 0.00 0.00 32.41 1.52
693 701 7.633789 ACATCAGAGCCCTTCTTCTATAAAAA 58.366 34.615 0.00 0.00 32.41 1.94
741 755 3.450457 TGCTTTTGTTCATTCAACCACCT 59.550 39.130 0.00 0.00 33.51 4.00
773 789 9.654417 CTTTTTGTGGATGAATTTGTGAATTTC 57.346 29.630 0.00 0.00 35.65 2.17
782 798 6.980593 TGAATTTGTGAATTTCGGACAAGAT 58.019 32.000 3.45 0.00 35.65 2.40
783 799 7.083858 TGAATTTGTGAATTTCGGACAAGATC 58.916 34.615 3.45 6.28 35.65 2.75
784 800 6.573664 ATTTGTGAATTTCGGACAAGATCA 57.426 33.333 0.00 0.00 31.50 2.92
785 801 5.611796 TTGTGAATTTCGGACAAGATCAG 57.388 39.130 0.00 0.00 0.00 2.90
911 953 4.109675 CCCCGATCCACCACCACC 62.110 72.222 0.00 0.00 0.00 4.61
912 954 3.326578 CCCGATCCACCACCACCA 61.327 66.667 0.00 0.00 0.00 4.17
913 955 2.046314 CCGATCCACCACCACCAC 60.046 66.667 0.00 0.00 0.00 4.16
916 958 1.303317 GATCCACCACCACCACCAC 60.303 63.158 0.00 0.00 0.00 4.16
917 959 2.063015 GATCCACCACCACCACCACA 62.063 60.000 0.00 0.00 0.00 4.17
1183 1249 4.796495 AATCGCCTTCCGCCACCC 62.796 66.667 0.00 0.00 36.73 4.61
1293 1382 2.642311 TCAAGGTACCTGCTTTCCATCA 59.358 45.455 17.14 0.00 0.00 3.07
1374 1476 0.179100 ACATCTTCATCGAGGGCGTG 60.179 55.000 0.00 0.00 38.98 5.34
1531 1638 2.239402 TGCTTACATTCCTCATCTGCCA 59.761 45.455 0.00 0.00 0.00 4.92
1543 1650 3.689347 TCATCTGCCAACTGCTTACATT 58.311 40.909 0.00 0.00 42.00 2.71
1544 1651 3.691118 TCATCTGCCAACTGCTTACATTC 59.309 43.478 0.00 0.00 42.00 2.67
1545 1652 2.436417 TCTGCCAACTGCTTACATTCC 58.564 47.619 0.00 0.00 42.00 3.01
1546 1653 2.040278 TCTGCCAACTGCTTACATTCCT 59.960 45.455 0.00 0.00 42.00 3.36
1548 1655 2.224744 TGCCAACTGCTTACATTCCTCA 60.225 45.455 0.00 0.00 42.00 3.86
1549 1656 2.819608 GCCAACTGCTTACATTCCTCAA 59.180 45.455 0.00 0.00 36.87 3.02
1550 1657 3.366374 GCCAACTGCTTACATTCCTCAAC 60.366 47.826 0.00 0.00 36.87 3.18
1551 1658 4.074970 CCAACTGCTTACATTCCTCAACT 58.925 43.478 0.00 0.00 0.00 3.16
1556 1663 4.575885 TGCTTACATTCCTCAACTGTACC 58.424 43.478 0.00 0.00 0.00 3.34
1558 1665 2.762535 ACATTCCTCAACTGTACCGG 57.237 50.000 0.00 0.00 0.00 5.28
1559 1666 2.253610 ACATTCCTCAACTGTACCGGA 58.746 47.619 9.46 0.00 0.00 5.14
1560 1667 2.838202 ACATTCCTCAACTGTACCGGAT 59.162 45.455 9.46 0.00 0.00 4.18
1575 1689 1.683943 CGGATGATGGATGCAGGTTT 58.316 50.000 0.00 0.00 0.00 3.27
1820 1997 6.312399 CTGTATTTTGGACAGTGTTGCTTA 57.688 37.500 0.00 0.00 39.61 3.09
1821 1998 6.067263 TGTATTTTGGACAGTGTTGCTTAC 57.933 37.500 0.00 0.00 0.00 2.34
1822 1999 5.590663 TGTATTTTGGACAGTGTTGCTTACA 59.409 36.000 0.00 0.00 0.00 2.41
1862 2054 1.486310 TCCTCAGCGCTGAATTGGTAT 59.514 47.619 37.16 0.00 39.39 2.73
1897 2094 3.253432 GCTTACTTCCTGTTTGTCTTGGG 59.747 47.826 0.00 0.00 0.00 4.12
2102 2626 3.382546 GTGTTGATCTTGCCTGCCATTAT 59.617 43.478 0.00 0.00 0.00 1.28
2103 2627 4.025360 TGTTGATCTTGCCTGCCATTATT 58.975 39.130 0.00 0.00 0.00 1.40
2104 2628 4.467082 TGTTGATCTTGCCTGCCATTATTT 59.533 37.500 0.00 0.00 0.00 1.40
2143 2684 6.058833 TCACAAGTGCAGTCTTGGTTTTATA 58.941 36.000 18.25 0.00 46.11 0.98
2145 2686 7.880713 TCACAAGTGCAGTCTTGGTTTTATATA 59.119 33.333 18.25 0.00 46.11 0.86
2146 2687 7.962918 CACAAGTGCAGTCTTGGTTTTATATAC 59.037 37.037 18.25 0.00 46.11 1.47
2147 2688 7.663905 ACAAGTGCAGTCTTGGTTTTATATACA 59.336 33.333 18.25 0.00 46.11 2.29
2148 2689 7.611213 AGTGCAGTCTTGGTTTTATATACAC 57.389 36.000 0.00 0.00 0.00 2.90
2151 2692 7.120726 GTGCAGTCTTGGTTTTATATACACCTT 59.879 37.037 10.42 0.00 0.00 3.50
2152 2693 7.335924 TGCAGTCTTGGTTTTATATACACCTTC 59.664 37.037 10.42 1.73 0.00 3.46
2153 2694 7.335924 GCAGTCTTGGTTTTATATACACCTTCA 59.664 37.037 10.42 0.00 0.00 3.02
2154 2695 9.396022 CAGTCTTGGTTTTATATACACCTTCAT 57.604 33.333 10.42 0.00 0.00 2.57
2155 2696 9.975218 AGTCTTGGTTTTATATACACCTTCATT 57.025 29.630 10.42 0.00 0.00 2.57
2205 2746 9.541143 AAATAAGTGTTTTTGGTTGGATGTTAG 57.459 29.630 0.00 0.00 0.00 2.34
2210 2751 7.710475 AGTGTTTTTGGTTGGATGTTAGATTTG 59.290 33.333 0.00 0.00 0.00 2.32
2213 2754 5.798125 TTGGTTGGATGTTAGATTTGCAA 57.202 34.783 0.00 0.00 0.00 4.08
2216 2757 6.586344 TGGTTGGATGTTAGATTTGCAAAAA 58.414 32.000 17.19 3.08 0.00 1.94
2341 2882 4.867047 CACCATACTTTGTGACTAGCTCTG 59.133 45.833 0.00 0.00 34.37 3.35
2348 2889 1.289231 TGTGACTAGCTCTGGAGGGAT 59.711 52.381 0.00 0.00 0.00 3.85
2364 2905 1.680338 GGATGGACATGCTTGGTACC 58.320 55.000 4.43 4.43 0.00 3.34
2402 2943 0.324943 TGCTTGCCTTGAGTCCTACC 59.675 55.000 0.00 0.00 0.00 3.18
2403 2944 0.615850 GCTTGCCTTGAGTCCTACCT 59.384 55.000 0.00 0.00 0.00 3.08
2404 2945 1.831736 GCTTGCCTTGAGTCCTACCTA 59.168 52.381 0.00 0.00 0.00 3.08
2405 2946 2.418884 GCTTGCCTTGAGTCCTACCTAC 60.419 54.545 0.00 0.00 0.00 3.18
2418 2959 7.068839 TGAGTCCTACCTACTCTGATTGATTTC 59.931 40.741 4.99 0.00 43.13 2.17
2526 3067 4.892934 ACACTCCTTTCTATTGTGCCAAAA 59.107 37.500 0.00 0.00 32.49 2.44
2565 3106 4.142447 TGGTTATCAAGCTACGAGTCACTC 60.142 45.833 0.00 0.00 0.00 3.51
2601 3142 8.451748 GTGGTAAGTTCAGAATCCTTTGAATAC 58.548 37.037 0.00 0.00 35.91 1.89
2746 3288 8.985315 TTTCTGGTTTAATGCTATCATGAGAT 57.015 30.769 0.09 0.00 38.29 2.75
2758 3300 1.000938 TCATGAGATCTCGCCATCACG 60.001 52.381 17.76 0.00 0.00 4.35
2761 3303 0.039617 GAGATCTCGCCATCACGGAG 60.040 60.000 7.04 0.00 36.56 4.63
2857 3400 7.054491 AGCATTCAAGTTGTCCTAATTTGTT 57.946 32.000 2.11 0.00 0.00 2.83
2859 3402 8.082242 AGCATTCAAGTTGTCCTAATTTGTTAC 58.918 33.333 2.11 0.00 0.00 2.50
3061 3604 7.099120 CCTGATCCTTTCTTTTAAACCATTGG 58.901 38.462 0.00 0.00 0.00 3.16
3083 3626 6.735678 GGTTGCATTTAACCTTAATTTGGG 57.264 37.500 0.00 0.00 45.29 4.12
3118 3661 4.969359 ACTCCATGTAGCCTTTGGTATAGT 59.031 41.667 0.00 0.00 0.00 2.12
3185 3728 6.737254 ACCATTCCTGTAACTATTTTGTCG 57.263 37.500 0.00 0.00 0.00 4.35
3351 3894 2.932614 CAAGCTACAGTGAGGTACATGC 59.067 50.000 0.00 0.00 0.00 4.06
3396 3939 7.171508 TCCTAATATCGTCTATGAAACGTACGT 59.828 37.037 16.72 16.72 40.86 3.57
3412 3955 3.001431 CGTACGTTGAACAAACCACATGA 59.999 43.478 7.22 0.00 35.13 3.07
3424 3967 5.833131 ACAAACCACATGACCTTAGTTCATT 59.167 36.000 0.00 0.00 0.00 2.57
3481 4025 7.899330 CGTTCAAATATTTCATTTGATTGCACC 59.101 33.333 11.91 0.00 44.45 5.01
3509 4053 6.183360 TGTTCTTCATCAAAACTCAGCCATTT 60.183 34.615 0.00 0.00 0.00 2.32
3519 4063 7.500892 TCAAAACTCAGCCATTTTGAACTACTA 59.499 33.333 9.14 0.00 46.53 1.82
3646 4195 5.675684 AGGTTTTGAATTTGTTCACTGGT 57.324 34.783 0.00 0.00 0.00 4.00
3647 4196 6.048732 AGGTTTTGAATTTGTTCACTGGTT 57.951 33.333 0.00 0.00 0.00 3.67
3648 4197 7.176589 AGGTTTTGAATTTGTTCACTGGTTA 57.823 32.000 0.00 0.00 0.00 2.85
3649 4198 7.616313 AGGTTTTGAATTTGTTCACTGGTTAA 58.384 30.769 0.00 0.00 0.00 2.01
3650 4199 8.264347 AGGTTTTGAATTTGTTCACTGGTTAAT 58.736 29.630 0.00 0.00 0.00 1.40
3651 4200 8.888716 GGTTTTGAATTTGTTCACTGGTTAATT 58.111 29.630 0.00 0.00 0.00 1.40
3652 4201 9.701355 GTTTTGAATTTGTTCACTGGTTAATTG 57.299 29.630 0.00 0.00 0.00 2.32
3653 4202 8.430801 TTTGAATTTGTTCACTGGTTAATTGG 57.569 30.769 0.00 0.00 0.00 3.16
3654 4203 7.118496 TGAATTTGTTCACTGGTTAATTGGT 57.882 32.000 0.00 0.00 0.00 3.67
3655 4204 7.560368 TGAATTTGTTCACTGGTTAATTGGTT 58.440 30.769 0.00 0.00 0.00 3.67
3656 4205 8.696374 TGAATTTGTTCACTGGTTAATTGGTTA 58.304 29.630 0.00 0.00 0.00 2.85
3657 4206 9.705290 GAATTTGTTCACTGGTTAATTGGTTAT 57.295 29.630 0.00 0.00 0.00 1.89
3660 4209 8.879342 TTGTTCACTGGTTAATTGGTTATTTG 57.121 30.769 0.00 0.00 0.00 2.32
3661 4210 8.239038 TGTTCACTGGTTAATTGGTTATTTGA 57.761 30.769 0.00 0.00 0.00 2.69
3662 4211 8.865090 TGTTCACTGGTTAATTGGTTATTTGAT 58.135 29.630 0.00 0.00 0.00 2.57
3665 4214 8.682710 TCACTGGTTAATTGGTTATTTGATAGC 58.317 33.333 0.00 0.00 0.00 2.97
3666 4215 7.920682 CACTGGTTAATTGGTTATTTGATAGCC 59.079 37.037 0.00 0.00 36.73 3.93
3667 4216 7.839200 ACTGGTTAATTGGTTATTTGATAGCCT 59.161 33.333 3.12 0.00 37.07 4.58
3668 4217 9.349713 CTGGTTAATTGGTTATTTGATAGCCTA 57.650 33.333 3.12 0.00 37.07 3.93
3669 4218 9.127277 TGGTTAATTGGTTATTTGATAGCCTAC 57.873 33.333 3.12 0.00 37.07 3.18
3670 4219 9.350951 GGTTAATTGGTTATTTGATAGCCTACT 57.649 33.333 3.12 0.00 37.07 2.57
3672 4221 9.569122 TTAATTGGTTATTTGATAGCCTACTCC 57.431 33.333 3.12 0.00 37.07 3.85
3673 4222 6.569127 TTGGTTATTTGATAGCCTACTCCA 57.431 37.500 3.12 0.00 37.07 3.86
3674 4223 6.569127 TGGTTATTTGATAGCCTACTCCAA 57.431 37.500 3.12 0.00 37.07 3.53
3675 4224 6.354130 TGGTTATTTGATAGCCTACTCCAAC 58.646 40.000 3.12 0.00 37.07 3.77
3676 4225 6.157994 TGGTTATTTGATAGCCTACTCCAACT 59.842 38.462 3.12 0.00 37.07 3.16
3677 4226 7.054751 GGTTATTTGATAGCCTACTCCAACTT 58.945 38.462 0.00 0.00 33.77 2.66
3678 4227 7.012421 GGTTATTTGATAGCCTACTCCAACTTG 59.988 40.741 0.00 0.00 33.77 3.16
3679 4228 5.499004 TTTGATAGCCTACTCCAACTTGT 57.501 39.130 0.00 0.00 0.00 3.16
3680 4229 5.499004 TTGATAGCCTACTCCAACTTGTT 57.501 39.130 0.00 0.00 0.00 2.83
3681 4230 5.499004 TGATAGCCTACTCCAACTTGTTT 57.501 39.130 0.00 0.00 0.00 2.83
3682 4231 5.245531 TGATAGCCTACTCCAACTTGTTTG 58.754 41.667 0.00 0.00 34.63 2.93
3692 4241 3.177997 CAACTTGTTTGGGACCAAAGG 57.822 47.619 16.33 11.81 45.16 3.11
3693 4242 1.119684 ACTTGTTTGGGACCAAAGGC 58.880 50.000 16.33 7.06 45.16 4.35
3694 4243 1.342975 ACTTGTTTGGGACCAAAGGCT 60.343 47.619 16.33 0.00 45.16 4.58
3695 4244 1.762370 CTTGTTTGGGACCAAAGGCTT 59.238 47.619 16.33 0.00 45.16 4.35
3696 4245 1.872773 TGTTTGGGACCAAAGGCTTT 58.127 45.000 16.33 6.68 45.16 3.51
3697 4246 1.484240 TGTTTGGGACCAAAGGCTTTG 59.516 47.619 28.79 28.79 45.16 2.77
3698 4247 1.484653 GTTTGGGACCAAAGGCTTTGT 59.515 47.619 31.68 22.03 45.16 2.83
3699 4248 1.872773 TTGGGACCAAAGGCTTTGTT 58.127 45.000 31.68 22.65 38.98 2.83
3700 4249 1.118838 TGGGACCAAAGGCTTTGTTG 58.881 50.000 31.68 22.18 38.98 3.33
3701 4250 1.119684 GGGACCAAAGGCTTTGTTGT 58.880 50.000 31.68 24.78 38.98 3.32
3702 4251 1.484653 GGGACCAAAGGCTTTGTTGTT 59.515 47.619 31.68 16.91 38.98 2.83
3703 4252 2.549926 GGACCAAAGGCTTTGTTGTTG 58.450 47.619 31.68 20.95 38.98 3.33
3704 4253 2.093711 GGACCAAAGGCTTTGTTGTTGT 60.094 45.455 31.68 23.54 38.98 3.32
3705 4254 3.595173 GACCAAAGGCTTTGTTGTTGTT 58.405 40.909 31.68 11.74 38.98 2.83
3706 4255 3.333804 ACCAAAGGCTTTGTTGTTGTTG 58.666 40.909 31.68 19.13 38.98 3.33
3707 4256 3.244387 ACCAAAGGCTTTGTTGTTGTTGT 60.244 39.130 31.68 19.69 38.98 3.32
3708 4257 3.750652 CCAAAGGCTTTGTTGTTGTTGTT 59.249 39.130 31.68 0.00 38.98 2.83
3709 4258 4.378253 CCAAAGGCTTTGTTGTTGTTGTTG 60.378 41.667 31.68 13.01 38.98 3.33
3710 4259 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
3711 4260 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3712 4261 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
3713 4262 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
3714 4263 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
3715 4264 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
3716 4265 4.458951 TTGTTGTTGTTGTTGTTGTTGC 57.541 36.364 0.00 0.00 0.00 4.17
3717 4266 3.722147 TGTTGTTGTTGTTGTTGTTGCT 58.278 36.364 0.00 0.00 0.00 3.91
3718 4267 3.492383 TGTTGTTGTTGTTGTTGTTGCTG 59.508 39.130 0.00 0.00 0.00 4.41
3719 4268 3.377346 TGTTGTTGTTGTTGTTGCTGT 57.623 38.095 0.00 0.00 0.00 4.40
3720 4269 3.722147 TGTTGTTGTTGTTGTTGCTGTT 58.278 36.364 0.00 0.00 0.00 3.16
3721 4270 3.492383 TGTTGTTGTTGTTGTTGCTGTTG 59.508 39.130 0.00 0.00 0.00 3.33
3722 4271 3.377346 TGTTGTTGTTGTTGCTGTTGT 57.623 38.095 0.00 0.00 0.00 3.32
3723 4272 3.722147 TGTTGTTGTTGTTGCTGTTGTT 58.278 36.364 0.00 0.00 0.00 2.83
3724 4273 3.492383 TGTTGTTGTTGTTGCTGTTGTTG 59.508 39.130 0.00 0.00 0.00 3.33
3725 4274 2.064762 TGTTGTTGTTGCTGTTGTTGC 58.935 42.857 0.00 0.00 0.00 4.17
3726 4275 2.288702 TGTTGTTGTTGCTGTTGTTGCT 60.289 40.909 0.00 0.00 0.00 3.91
3727 4276 1.993542 TGTTGTTGCTGTTGTTGCTG 58.006 45.000 0.00 0.00 0.00 4.41
3728 4277 1.271934 TGTTGTTGCTGTTGTTGCTGT 59.728 42.857 0.00 0.00 0.00 4.40
3729 4278 2.288702 TGTTGTTGCTGTTGTTGCTGTT 60.289 40.909 0.00 0.00 0.00 3.16
3730 4279 1.993542 TGTTGCTGTTGTTGCTGTTG 58.006 45.000 0.00 0.00 0.00 3.33
3799 4351 4.707934 TCATGGTGTGATCAAATCATGCTT 59.292 37.500 27.91 0.00 42.04 3.91
3861 4540 7.062749 AGGACAATAGTTGAGTTGTGACTTA 57.937 36.000 0.00 0.00 38.57 2.24
3870 4550 6.149474 AGTTGAGTTGTGACTTAATGGCATAC 59.851 38.462 0.00 0.00 35.31 2.39
3874 4554 4.568072 TGTGACTTAATGGCATACTGGT 57.432 40.909 0.00 0.00 35.31 4.00
3878 4558 6.099701 TGTGACTTAATGGCATACTGGTATCT 59.900 38.462 0.00 0.00 35.31 1.98
3887 4567 3.557264 GCATACTGGTATCTGGGGCTTAC 60.557 52.174 0.00 0.00 0.00 2.34
3898 4578 6.775594 ATCTGGGGCTTACTTTTGTTAATC 57.224 37.500 0.00 0.00 0.00 1.75
3903 4583 5.245301 GGGGCTTACTTTTGTTAATCCTGTT 59.755 40.000 0.00 0.00 0.00 3.16
3907 4587 9.923143 GGCTTACTTTTGTTAATCCTGTTATTT 57.077 29.630 0.00 0.00 0.00 1.40
3962 4642 8.821686 AATCATATGGTGGTCAACTCATTAAA 57.178 30.769 2.13 0.00 0.00 1.52
3974 4654 7.253422 GTCAACTCATTAAACAGATTGGGATG 58.747 38.462 0.00 0.00 0.00 3.51
3975 4655 5.841957 ACTCATTAAACAGATTGGGATGC 57.158 39.130 0.00 0.00 0.00 3.91
4012 4692 7.012894 TGTTTTCTGATCCGTGATTGTTAGTTT 59.987 33.333 0.00 0.00 0.00 2.66
4020 4700 7.355332 TCCGTGATTGTTAGTTTAAAGCTAC 57.645 36.000 0.00 0.00 0.00 3.58
4042 4723 4.158394 ACAAACGATGGCTGCTATTCATTT 59.842 37.500 0.00 0.00 0.00 2.32
4053 4734 5.850128 GCTGCTATTCATTTGATTAAGCTCG 59.150 40.000 0.00 0.00 0.00 5.03
4063 4744 3.674997 TGATTAAGCTCGGCAGAACTTT 58.325 40.909 7.80 0.00 34.85 2.66
4082 4763 5.324409 ACTTTAACATCTGCCCATTCTCAA 58.676 37.500 0.00 0.00 0.00 3.02
4123 4834 5.173854 GCAAAACTGTGCTGTTATTTGTCTC 59.826 40.000 0.00 0.00 41.51 3.36
4145 4856 3.371034 TGTATGGCAGTGCTACTCCTAA 58.629 45.455 16.11 0.00 0.00 2.69
4176 4887 4.623932 TGGCAGAAGTTAACTGATGAGT 57.376 40.909 19.43 0.29 37.54 3.41
4177 4888 4.569943 TGGCAGAAGTTAACTGATGAGTC 58.430 43.478 19.43 8.97 37.54 3.36
4182 4893 7.865385 GGCAGAAGTTAACTGATGAGTCTATAG 59.135 40.741 19.43 0.00 37.54 1.31
4191 4904 8.487313 AACTGATGAGTCTATAGCTATCGTAG 57.513 38.462 10.16 2.37 0.00 3.51
4283 5174 1.276989 CTGGGCAATCATGGTTTGCTT 59.723 47.619 24.11 0.00 46.74 3.91
4337 5228 4.713824 TTCTCACGGTTCCTGTACTATG 57.286 45.455 0.00 0.00 0.00 2.23
4416 5307 6.922333 AGAGTATTCTGAGATATGGTCTGCCA 60.922 42.308 0.00 0.00 39.86 4.92
4452 5344 5.186992 GGTAATTTCCCTGGCTGTTATTTGT 59.813 40.000 0.00 0.00 0.00 2.83
4453 5345 5.823861 AATTTCCCTGGCTGTTATTTGTT 57.176 34.783 0.00 0.00 0.00 2.83
4543 5435 6.234920 TGGTAATTTAGCTTGCTGTTCTACA 58.765 36.000 5.26 0.00 0.00 2.74
4544 5436 6.712998 TGGTAATTTAGCTTGCTGTTCTACAA 59.287 34.615 5.26 0.00 0.00 2.41
4559 5451 7.273815 GCTGTTCTACAATAGTCAGTCTAACAC 59.726 40.741 0.00 0.00 34.30 3.32
4573 5465 6.162079 CAGTCTAACACTGTCATGTCTGATT 58.838 40.000 4.01 1.55 46.81 2.57
4658 5550 3.372025 GGAACATCTTGGAAGGGCTATGT 60.372 47.826 0.00 0.00 0.00 2.29
4742 5635 3.321497 CTGCTCTTGTCTTTCGCTAACT 58.679 45.455 0.00 0.00 0.00 2.24
4756 5649 7.442969 TCTTTCGCTAACTGAACCTTCAAATTA 59.557 33.333 0.00 0.00 36.64 1.40
4787 5680 0.450983 GGAGATCCGAAGACGACGTT 59.549 55.000 0.13 0.00 42.66 3.99
4920 5814 2.083167 TGGTATGTCGGTTTCGGTTC 57.917 50.000 0.00 0.00 36.95 3.62
4923 5817 2.350498 GGTATGTCGGTTTCGGTTCATG 59.650 50.000 0.00 0.00 36.95 3.07
4940 5834 5.982516 GGTTCATGCTTCTGTAGTAGATGAG 59.017 44.000 0.00 0.00 34.80 2.90
4969 5863 5.233476 GCCGATCAATAATGTAGTGTTTCGA 59.767 40.000 0.00 0.00 34.81 3.71
5011 5905 2.550180 GCACAAAGTGGGACTTCTCTTC 59.450 50.000 0.00 0.00 37.47 2.87
5220 6258 5.633182 CCTTGTTGGTTGTAATGTGTATTGC 59.367 40.000 0.00 0.00 0.00 3.56
5341 6389 4.144297 TGCTTGTTGCCTCTGAAATACTT 58.856 39.130 0.00 0.00 42.00 2.24
5346 6394 3.914426 TGCCTCTGAAATACTTCCTCC 57.086 47.619 0.00 0.00 0.00 4.30
5349 6397 3.383825 GCCTCTGAAATACTTCCTCCGTA 59.616 47.826 0.00 0.00 0.00 4.02
5350 6398 4.142004 GCCTCTGAAATACTTCCTCCGTAA 60.142 45.833 0.00 0.00 0.00 3.18
5369 6417 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
5370 6418 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
5371 6419 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
5385 6433 9.570488 AAGAGCGTTTAGAATACTAAAGTACTG 57.430 33.333 0.00 0.00 45.42 2.74
5386 6434 8.954350 AGAGCGTTTAGAATACTAAAGTACTGA 58.046 33.333 0.00 0.00 45.42 3.41
5387 6435 9.733219 GAGCGTTTAGAATACTAAAGTACTGAT 57.267 33.333 0.00 0.00 45.42 2.90
5389 6437 9.298774 GCGTTTAGAATACTAAAGTACTGATGT 57.701 33.333 0.00 0.00 45.42 3.06
5395 6443 9.298774 AGAATACTAAAGTACTGATGTAAACGC 57.701 33.333 0.00 0.00 32.72 4.84
5537 6626 9.597681 TTCTACTCCCTCCGTAAAGAAATATAT 57.402 33.333 0.00 0.00 0.00 0.86
5744 6899 2.423538 ACGTGGCATAAGAAATCCAAGC 59.576 45.455 0.00 0.00 32.52 4.01
5768 6923 9.277783 AGCAGTTCTGAATAATATTACACCATC 57.722 33.333 3.84 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.489489 AGATACTCCAATGTCATCACAAGTATT 58.511 33.333 9.61 0.00 35.64 1.89
22 23 4.040952 GCCACCTAGATACTCCAATGTCAT 59.959 45.833 0.00 0.00 0.00 3.06
44 45 4.644103 ATGCATCAACCAACTCTAATGC 57.356 40.909 0.00 0.00 39.85 3.56
124 125 7.693969 ATTCTTTCCGATCAATCTTTTGAGT 57.306 32.000 0.00 0.00 44.75 3.41
195 198 4.688879 CACTCCAAAGTTGTTATGTAGCGA 59.311 41.667 0.00 0.00 31.71 4.93
201 204 6.867662 AAGAGTCACTCCAAAGTTGTTATG 57.132 37.500 0.00 0.00 31.71 1.90
206 209 5.162000 GACAAAGAGTCACTCCAAAGTTG 57.838 43.478 0.00 1.61 46.77 3.16
269 272 5.213891 TCACTACTGCAATCTCTCAACAA 57.786 39.130 0.00 0.00 0.00 2.83
298 301 4.462834 GCTTAGAAACAAGGCATAGGGTTT 59.537 41.667 0.00 0.00 36.27 3.27
326 330 8.018520 TGATAAAACGAAGCACAAACGATATTT 58.981 29.630 0.00 0.00 0.00 1.40
342 346 5.708230 ACCAAGGTAGCAAATGATAAAACGA 59.292 36.000 0.00 0.00 0.00 3.85
438 442 5.593679 ATTGTATAGGTGCACTAGTTCGT 57.406 39.130 17.98 0.00 34.56 3.85
498 503 5.481473 ACAACCCTGCAATCAAATACAAGAT 59.519 36.000 0.00 0.00 0.00 2.40
542 548 0.824109 CAATCTGTGGGAGGCGTAGA 59.176 55.000 0.00 0.00 0.00 2.59
595 602 5.701290 GTGCAGAATTTTGTAGGACAGTAGT 59.299 40.000 0.00 0.00 0.00 2.73
612 619 0.756294 TTCGGTCTCCAAGTGCAGAA 59.244 50.000 0.00 0.00 0.00 3.02
626 633 3.503363 TGTAATGTAGACTCGTGTTCGGT 59.497 43.478 0.00 0.00 37.69 4.69
661 669 5.073437 AGAAGGGCTCTGATGTCTACTAT 57.927 43.478 0.00 0.00 31.12 2.12
726 734 3.636764 AGGTGAAAGGTGGTTGAATGAAC 59.363 43.478 0.00 0.00 0.00 3.18
741 755 7.065563 CACAAATTCATCCACAAAAAGGTGAAA 59.934 33.333 0.00 0.00 41.32 2.69
773 789 2.028112 TCCTGAAACCTGATCTTGTCCG 60.028 50.000 0.00 0.00 0.00 4.79
782 798 0.491823 TCCCCTCTCCTGAAACCTGA 59.508 55.000 0.00 0.00 0.00 3.86
783 799 0.908198 CTCCCCTCTCCTGAAACCTG 59.092 60.000 0.00 0.00 0.00 4.00
784 800 0.912006 GCTCCCCTCTCCTGAAACCT 60.912 60.000 0.00 0.00 0.00 3.50
785 801 0.912006 AGCTCCCCTCTCCTGAAACC 60.912 60.000 0.00 0.00 0.00 3.27
911 953 1.073964 CGATCTGCTCTTGTGTGGTG 58.926 55.000 0.00 0.00 0.00 4.17
912 954 0.969149 TCGATCTGCTCTTGTGTGGT 59.031 50.000 0.00 0.00 0.00 4.16
913 955 2.084610 TTCGATCTGCTCTTGTGTGG 57.915 50.000 0.00 0.00 0.00 4.17
916 958 3.264947 TGGATTTCGATCTGCTCTTGTG 58.735 45.455 0.00 0.00 0.00 3.33
917 959 3.529533 CTGGATTTCGATCTGCTCTTGT 58.470 45.455 0.00 0.00 0.00 3.16
1482 1584 2.350514 GCACAGGCAGAAGGAGCT 59.649 61.111 0.00 0.00 40.72 4.09
1483 1585 2.749441 GGCACAGGCAGAAGGAGC 60.749 66.667 0.00 0.00 43.71 4.70
1531 1638 4.718961 ACAGTTGAGGAATGTAAGCAGTT 58.281 39.130 0.00 0.00 0.00 3.16
1543 1650 2.225382 TCATCCGGTACAGTTGAGGA 57.775 50.000 0.00 0.00 35.24 3.71
1544 1651 2.483714 CCATCATCCGGTACAGTTGAGG 60.484 54.545 0.00 0.00 0.00 3.86
1545 1652 2.430694 TCCATCATCCGGTACAGTTGAG 59.569 50.000 0.00 0.00 0.00 3.02
1546 1653 2.462723 TCCATCATCCGGTACAGTTGA 58.537 47.619 0.00 0.00 0.00 3.18
1548 1655 2.485479 GCATCCATCATCCGGTACAGTT 60.485 50.000 0.00 0.00 0.00 3.16
1549 1656 1.070758 GCATCCATCATCCGGTACAGT 59.929 52.381 0.00 0.00 0.00 3.55
1550 1657 1.070601 TGCATCCATCATCCGGTACAG 59.929 52.381 0.00 0.00 0.00 2.74
1551 1658 1.070601 CTGCATCCATCATCCGGTACA 59.929 52.381 0.00 0.00 0.00 2.90
1556 1663 1.335810 CAAACCTGCATCCATCATCCG 59.664 52.381 0.00 0.00 0.00 4.18
1558 1665 2.756760 ACACAAACCTGCATCCATCATC 59.243 45.455 0.00 0.00 0.00 2.92
1559 1666 2.494471 CACACAAACCTGCATCCATCAT 59.506 45.455 0.00 0.00 0.00 2.45
1560 1667 1.887854 CACACAAACCTGCATCCATCA 59.112 47.619 0.00 0.00 0.00 3.07
1575 1689 3.164977 TTGCCCTCGTCCCACACA 61.165 61.111 0.00 0.00 0.00 3.72
1820 1997 5.467735 GGACCGAATGTAACTGTTAAAGTGT 59.532 40.000 1.10 0.00 39.81 3.55
1821 1998 5.699458 AGGACCGAATGTAACTGTTAAAGTG 59.301 40.000 1.10 0.00 39.81 3.16
1822 1999 5.861727 AGGACCGAATGTAACTGTTAAAGT 58.138 37.500 1.10 0.00 42.60 2.66
1823 2000 5.929992 TGAGGACCGAATGTAACTGTTAAAG 59.070 40.000 1.10 0.00 0.00 1.85
1824 2001 5.856156 TGAGGACCGAATGTAACTGTTAAA 58.144 37.500 1.10 0.00 0.00 1.52
1825 2002 5.471556 TGAGGACCGAATGTAACTGTTAA 57.528 39.130 1.10 0.00 0.00 2.01
1826 2003 4.619863 GCTGAGGACCGAATGTAACTGTTA 60.620 45.833 0.00 0.00 0.00 2.41
1862 2054 7.630082 ACAGGAAGTAAGCTACATCCAAAATA 58.370 34.615 15.33 0.00 46.23 1.40
1897 2094 1.804748 CTTAGCCGGAACCAAACAGAC 59.195 52.381 5.05 0.00 0.00 3.51
1958 2454 0.610232 CCAGAAAAGGGGACAGCAGG 60.610 60.000 0.00 0.00 0.00 4.85
1961 2457 1.228552 TGCCAGAAAAGGGGACAGC 60.229 57.895 0.00 0.00 0.00 4.40
2102 2626 1.351017 GTGATGAGGGGTGGAGACAAA 59.649 52.381 0.00 0.00 46.06 2.83
2103 2627 0.984230 GTGATGAGGGGTGGAGACAA 59.016 55.000 0.00 0.00 46.06 3.18
2104 2628 0.178906 TGTGATGAGGGGTGGAGACA 60.179 55.000 0.00 0.00 38.70 3.41
2145 2686 9.320295 TCCCAAAATAAAATAGAATGAAGGTGT 57.680 29.630 0.00 0.00 0.00 4.16
2168 2709 9.586435 CCAAAAACACTTATTTTCATCTATCCC 57.414 33.333 0.00 0.00 31.35 3.85
2178 2719 8.800370 AACATCCAACCAAAAACACTTATTTT 57.200 26.923 0.00 0.00 33.13 1.82
2192 2733 5.798125 TTTGCAAATCTAACATCCAACCA 57.202 34.783 8.05 0.00 0.00 3.67
2205 2746 6.036408 GGGCATATTCAGTCTTTTTGCAAATC 59.964 38.462 13.65 4.59 0.00 2.17
2210 2751 4.725790 AGGGCATATTCAGTCTTTTTGC 57.274 40.909 0.00 0.00 0.00 3.68
2213 2754 5.779771 TGGAAAAGGGCATATTCAGTCTTTT 59.220 36.000 0.00 0.00 37.21 2.27
2216 2757 4.530875 CTGGAAAAGGGCATATTCAGTCT 58.469 43.478 0.00 0.00 0.00 3.24
2281 2822 3.068590 CCAGTTTGCTTCCTGTTGATTGT 59.931 43.478 0.00 0.00 0.00 2.71
2341 2882 0.466922 CCAAGCATGTCCATCCCTCC 60.467 60.000 0.00 0.00 0.00 4.30
2348 2889 1.064003 ACTGGTACCAAGCATGTCCA 58.936 50.000 17.11 0.00 31.47 4.02
2364 2905 5.718649 AGCAACAACGTAGCATAATACTG 57.281 39.130 0.00 0.00 0.00 2.74
2402 2943 9.434420 ACAAGAAGAAGAAATCAATCAGAGTAG 57.566 33.333 0.00 0.00 0.00 2.57
2404 2945 9.956640 ATACAAGAAGAAGAAATCAATCAGAGT 57.043 29.630 0.00 0.00 0.00 3.24
2418 2959 5.412594 TGCTAAACTGCCATACAAGAAGAAG 59.587 40.000 0.00 0.00 0.00 2.85
2526 3067 8.893563 TTGATAACCAGTCTTTTTGGGAATAT 57.106 30.769 0.00 0.00 40.11 1.28
2565 3106 4.919168 TCTGAACTTACCACAAACGTATCG 59.081 41.667 0.00 0.00 0.00 2.92
2601 3142 7.869937 ACGATGGTTTATCAGAGACATTATCAG 59.130 37.037 0.00 0.00 35.43 2.90
2746 3288 0.466372 AGATCTCCGTGATGGCGAGA 60.466 55.000 0.00 0.00 34.24 4.04
3061 3604 6.090223 CGTCCCAAATTAAGGTTAAATGCAAC 59.910 38.462 0.00 0.00 0.00 4.17
3083 3626 0.460284 CATGGAGTACTGCCACCGTC 60.460 60.000 12.28 0.00 38.44 4.79
3169 3712 7.597743 AGTTAGTGGACGACAAAATAGTTACAG 59.402 37.037 0.00 0.00 0.00 2.74
3185 3728 5.169295 AGTGCGAAATAGAAGTTAGTGGAC 58.831 41.667 0.00 0.00 0.00 4.02
3351 3894 7.624360 TTAGGACATAATACACTGCAAAAGG 57.376 36.000 0.00 0.00 0.00 3.11
3396 3939 5.197451 ACTAAGGTCATGTGGTTTGTTCAA 58.803 37.500 0.00 0.00 0.00 2.69
3412 3955 8.203485 TCTTTTGCAAATGAAATGAACTAAGGT 58.797 29.630 21.62 0.00 0.00 3.50
3503 4047 4.884164 AGCTGGATAGTAGTTCAAAATGGC 59.116 41.667 0.00 0.00 0.00 4.40
3509 4053 3.521560 CGCAAGCTGGATAGTAGTTCAA 58.478 45.455 0.00 0.00 0.00 2.69
3519 4063 1.304282 ATCCAACCGCAAGCTGGAT 59.696 52.632 8.11 8.11 46.99 3.41
3597 4143 4.523943 TGTTCAGGCTTGCAATTTGACTAT 59.476 37.500 0.00 0.00 0.00 2.12
3599 4145 2.694628 TGTTCAGGCTTGCAATTTGACT 59.305 40.909 0.00 0.00 0.00 3.41
3600 4146 3.054878 CTGTTCAGGCTTGCAATTTGAC 58.945 45.455 0.00 0.00 0.00 3.18
3602 4148 3.102052 ACTGTTCAGGCTTGCAATTTG 57.898 42.857 0.00 0.00 0.00 2.32
3603 4149 4.262164 CCTTACTGTTCAGGCTTGCAATTT 60.262 41.667 0.00 0.00 0.00 1.82
3607 4156 1.142870 ACCTTACTGTTCAGGCTTGCA 59.857 47.619 4.82 0.00 32.79 4.08
3646 4195 9.569122 GGAGTAGGCTATCAAATAACCAATTAA 57.431 33.333 0.00 0.00 0.00 1.40
3647 4196 8.719596 TGGAGTAGGCTATCAAATAACCAATTA 58.280 33.333 0.00 0.00 0.00 1.40
3648 4197 7.582719 TGGAGTAGGCTATCAAATAACCAATT 58.417 34.615 0.00 0.00 0.00 2.32
3649 4198 7.149202 TGGAGTAGGCTATCAAATAACCAAT 57.851 36.000 0.00 0.00 0.00 3.16
3650 4199 6.569127 TGGAGTAGGCTATCAAATAACCAA 57.431 37.500 0.00 0.00 0.00 3.67
3651 4200 6.157994 AGTTGGAGTAGGCTATCAAATAACCA 59.842 38.462 0.00 0.00 0.00 3.67
3652 4201 6.592870 AGTTGGAGTAGGCTATCAAATAACC 58.407 40.000 0.00 0.00 0.00 2.85
3653 4202 7.553044 ACAAGTTGGAGTAGGCTATCAAATAAC 59.447 37.037 7.96 0.00 0.00 1.89
3654 4203 7.630082 ACAAGTTGGAGTAGGCTATCAAATAA 58.370 34.615 7.96 0.00 0.00 1.40
3655 4204 7.195374 ACAAGTTGGAGTAGGCTATCAAATA 57.805 36.000 7.96 0.00 0.00 1.40
3656 4205 6.067217 ACAAGTTGGAGTAGGCTATCAAAT 57.933 37.500 7.96 0.25 0.00 2.32
3657 4206 5.499004 ACAAGTTGGAGTAGGCTATCAAA 57.501 39.130 7.96 0.00 0.00 2.69
3658 4207 5.499004 AACAAGTTGGAGTAGGCTATCAA 57.501 39.130 7.96 0.83 0.00 2.57
3659 4208 5.245531 CAAACAAGTTGGAGTAGGCTATCA 58.754 41.667 7.96 0.00 33.18 2.15
3660 4209 5.803020 CAAACAAGTTGGAGTAGGCTATC 57.197 43.478 7.96 0.00 33.18 2.08
3672 4221 2.741553 GCCTTTGGTCCCAAACAAGTTG 60.742 50.000 7.40 0.00 40.51 3.16
3673 4222 1.484653 GCCTTTGGTCCCAAACAAGTT 59.515 47.619 7.40 0.00 40.51 2.66
3674 4223 1.119684 GCCTTTGGTCCCAAACAAGT 58.880 50.000 7.40 0.00 40.51 3.16
3675 4224 1.413118 AGCCTTTGGTCCCAAACAAG 58.587 50.000 7.40 0.00 40.51 3.16
3676 4225 1.872773 AAGCCTTTGGTCCCAAACAA 58.127 45.000 7.40 0.00 40.51 2.83
3677 4226 1.484240 CAAAGCCTTTGGTCCCAAACA 59.516 47.619 9.37 0.00 40.51 2.83
3678 4227 1.484653 ACAAAGCCTTTGGTCCCAAAC 59.515 47.619 20.55 0.00 44.81 2.93
3679 4228 1.872773 ACAAAGCCTTTGGTCCCAAA 58.127 45.000 20.55 10.87 44.81 3.28
3680 4229 1.484240 CAACAAAGCCTTTGGTCCCAA 59.516 47.619 20.55 0.00 44.81 4.12
3681 4230 1.118838 CAACAAAGCCTTTGGTCCCA 58.881 50.000 20.55 0.00 44.81 4.37
3682 4231 1.119684 ACAACAAAGCCTTTGGTCCC 58.880 50.000 20.55 0.00 44.81 4.46
3683 4232 2.093711 ACAACAACAAAGCCTTTGGTCC 60.094 45.455 20.55 0.00 44.81 4.46
3684 4233 3.245518 ACAACAACAAAGCCTTTGGTC 57.754 42.857 20.55 0.00 44.81 4.02
3685 4234 3.244387 ACAACAACAACAAAGCCTTTGGT 60.244 39.130 20.55 12.23 44.81 3.67
3686 4235 3.333804 ACAACAACAACAAAGCCTTTGG 58.666 40.909 20.55 6.98 44.81 3.28
3687 4236 4.213059 ACAACAACAACAACAAAGCCTTTG 59.787 37.500 15.47 15.47 45.95 2.77
3688 4237 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3689 4238 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3690 4239 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3691 4240 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
3692 4241 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
3693 4242 4.903016 GCAACAACAACAACAACAACAAAG 59.097 37.500 0.00 0.00 0.00 2.77
3694 4243 4.572389 AGCAACAACAACAACAACAACAAA 59.428 33.333 0.00 0.00 0.00 2.83
3695 4244 4.025396 CAGCAACAACAACAACAACAACAA 60.025 37.500 0.00 0.00 0.00 2.83
3696 4245 3.492383 CAGCAACAACAACAACAACAACA 59.508 39.130 0.00 0.00 0.00 3.33
3697 4246 3.492756 ACAGCAACAACAACAACAACAAC 59.507 39.130 0.00 0.00 0.00 3.32
3698 4247 3.722147 ACAGCAACAACAACAACAACAA 58.278 36.364 0.00 0.00 0.00 2.83
3699 4248 3.377346 ACAGCAACAACAACAACAACA 57.623 38.095 0.00 0.00 0.00 3.33
3700 4249 3.492756 ACAACAGCAACAACAACAACAAC 59.507 39.130 0.00 0.00 0.00 3.32
3701 4250 3.722147 ACAACAGCAACAACAACAACAA 58.278 36.364 0.00 0.00 0.00 2.83
3702 4251 3.377346 ACAACAGCAACAACAACAACA 57.623 38.095 0.00 0.00 0.00 3.33
3703 4252 3.664014 GCAACAACAGCAACAACAACAAC 60.664 43.478 0.00 0.00 0.00 3.32
3704 4253 2.478134 GCAACAACAGCAACAACAACAA 59.522 40.909 0.00 0.00 0.00 2.83
3705 4254 2.064762 GCAACAACAGCAACAACAACA 58.935 42.857 0.00 0.00 0.00 3.33
3706 4255 2.092524 CAGCAACAACAGCAACAACAAC 59.907 45.455 0.00 0.00 0.00 3.32
3707 4256 2.288702 ACAGCAACAACAGCAACAACAA 60.289 40.909 0.00 0.00 0.00 2.83
3708 4257 1.271934 ACAGCAACAACAGCAACAACA 59.728 42.857 0.00 0.00 0.00 3.33
3709 4258 1.994916 ACAGCAACAACAGCAACAAC 58.005 45.000 0.00 0.00 0.00 3.32
3710 4259 2.288702 ACAACAGCAACAACAGCAACAA 60.289 40.909 0.00 0.00 0.00 2.83
3711 4260 1.271934 ACAACAGCAACAACAGCAACA 59.728 42.857 0.00 0.00 0.00 3.33
3712 4261 1.994916 ACAACAGCAACAACAGCAAC 58.005 45.000 0.00 0.00 0.00 4.17
3713 4262 2.739885 AACAACAGCAACAACAGCAA 57.260 40.000 0.00 0.00 0.00 3.91
3714 4263 3.857549 TTAACAACAGCAACAACAGCA 57.142 38.095 0.00 0.00 0.00 4.41
3715 4264 4.025813 CCAATTAACAACAGCAACAACAGC 60.026 41.667 0.00 0.00 0.00 4.40
3716 4265 5.108517 ACCAATTAACAACAGCAACAACAG 58.891 37.500 0.00 0.00 0.00 3.16
3717 4266 5.078411 ACCAATTAACAACAGCAACAACA 57.922 34.783 0.00 0.00 0.00 3.33
3718 4267 7.707774 ATAACCAATTAACAACAGCAACAAC 57.292 32.000 0.00 0.00 0.00 3.32
3719 4268 8.607459 CAAATAACCAATTAACAACAGCAACAA 58.393 29.630 0.00 0.00 0.00 2.83
3720 4269 7.981789 TCAAATAACCAATTAACAACAGCAACA 59.018 29.630 0.00 0.00 0.00 3.33
3721 4270 8.359060 TCAAATAACCAATTAACAACAGCAAC 57.641 30.769 0.00 0.00 0.00 4.17
3722 4271 9.202273 GATCAAATAACCAATTAACAACAGCAA 57.798 29.630 0.00 0.00 0.00 3.91
3723 4272 8.584157 AGATCAAATAACCAATTAACAACAGCA 58.416 29.630 0.00 0.00 0.00 4.41
3724 4273 8.986477 AGATCAAATAACCAATTAACAACAGC 57.014 30.769 0.00 0.00 0.00 4.40
3832 4384 8.784043 GTCACAACTCAACTATTGTCCTTATTT 58.216 33.333 0.00 0.00 36.92 1.40
3834 4386 7.680730 AGTCACAACTCAACTATTGTCCTTAT 58.319 34.615 0.00 0.00 36.92 1.73
3861 4540 2.376518 CCCCAGATACCAGTATGCCATT 59.623 50.000 0.00 0.00 31.97 3.16
3870 4550 3.933861 AAAGTAAGCCCCAGATACCAG 57.066 47.619 0.00 0.00 0.00 4.00
3874 4554 6.831868 GGATTAACAAAAGTAAGCCCCAGATA 59.168 38.462 0.00 0.00 32.02 1.98
3878 4558 4.770010 CAGGATTAACAAAAGTAAGCCCCA 59.230 41.667 0.00 0.00 37.67 4.96
3898 4578 3.820467 TGCACTGGTGAGAAAATAACAGG 59.180 43.478 4.79 0.00 0.00 4.00
3903 4583 4.574674 AGGATGCACTGGTGAGAAAATA 57.425 40.909 4.79 0.00 0.00 1.40
3907 4587 1.421268 ACAAGGATGCACTGGTGAGAA 59.579 47.619 4.79 0.00 0.00 2.87
3962 4642 2.711711 GATGCGCATCCCAATCTGT 58.288 52.632 35.11 5.74 31.76 3.41
3974 4654 0.603065 AGAAAACAAAGGGGATGCGC 59.397 50.000 0.00 0.00 0.00 6.09
3975 4655 1.885887 TCAGAAAACAAAGGGGATGCG 59.114 47.619 0.00 0.00 0.00 4.73
4012 4692 2.418628 GCAGCCATCGTTTGTAGCTTTA 59.581 45.455 0.00 0.00 0.00 1.85
4020 4700 3.976793 ATGAATAGCAGCCATCGTTTG 57.023 42.857 0.00 0.00 0.00 2.93
4042 4723 3.334583 AAGTTCTGCCGAGCTTAATCA 57.665 42.857 5.45 0.00 38.69 2.57
4082 4763 8.789762 ACAGTTTTGCCTATTACTACGATTTTT 58.210 29.630 0.00 0.00 0.00 1.94
4123 4834 8.897891 CCATTAGGAGTAGCACTGCCATACAG 62.898 50.000 0.00 0.00 45.10 2.74
4145 4856 3.377253 AACTTCTGCCATGATGACCAT 57.623 42.857 0.00 0.00 35.44 3.55
4240 5114 4.536765 CAACCAAAGCCCAATATCTAGGT 58.463 43.478 0.00 0.00 0.00 3.08
4315 5206 4.710375 ACATAGTACAGGAACCGTGAGAAT 59.290 41.667 0.00 0.00 0.00 2.40
4337 5228 6.481434 TCCAGGAGCTAAATACCTAGAAAC 57.519 41.667 0.00 0.00 32.35 2.78
4416 5307 2.433436 GAAATTACCAGGAACCGTGCT 58.567 47.619 0.00 0.00 0.00 4.40
4452 5344 7.280876 CAGATGTGAAAGTATAAAGCTGGCTAA 59.719 37.037 0.00 0.00 0.00 3.09
4453 5345 6.763135 CAGATGTGAAAGTATAAAGCTGGCTA 59.237 38.462 0.00 0.00 0.00 3.93
4489 5381 4.407818 CGCAGTTGTCTGTTGTAAAAACA 58.592 39.130 0.00 0.00 43.05 2.83
4559 5451 4.153655 CACAACAGGAATCAGACATGACAG 59.846 45.833 0.00 0.00 38.57 3.51
4573 5465 2.618241 GACTGATGCAAACACAACAGGA 59.382 45.455 0.00 0.00 32.60 3.86
4718 5610 1.784062 CGAAAGACAAGAGCAGGCG 59.216 57.895 0.00 0.00 0.00 5.52
4742 5635 4.144297 AGCTGCTGTAATTTGAAGGTTCA 58.856 39.130 0.00 0.00 34.92 3.18
4756 5649 1.118838 GGATCTCCAGTAGCTGCTGT 58.881 55.000 27.15 11.35 34.84 4.40
4920 5814 4.305769 GGCTCATCTACTACAGAAGCATG 58.694 47.826 0.00 0.00 38.42 4.06
4923 5817 2.860582 GCGGCTCATCTACTACAGAAGC 60.861 54.545 0.00 0.00 36.69 3.86
4940 5834 1.154413 CATTATTGATCGGCGCGGC 60.154 57.895 24.49 24.49 0.00 6.53
4969 5863 2.165845 CCAGGATACGTTCGAGGTTCTT 59.834 50.000 0.00 0.00 46.39 2.52
5233 6271 9.369904 GAAGTATGCAAATTTGGTGTATTTGAT 57.630 29.630 19.47 5.84 42.72 2.57
5270 6308 9.958180 TTCTTCAATACAATCTCCTATTGAACA 57.042 29.630 8.19 0.00 41.34 3.18
5341 6389 6.488006 ACGCTCTTATATTAGTTTACGGAGGA 59.512 38.462 0.00 0.00 0.00 3.71
5363 6411 9.298774 ACATCAGTACTTTAGTATTCTAAACGC 57.701 33.333 0.00 0.00 40.05 4.84
5369 6417 9.298774 GCGTTTACATCAGTACTTTAGTATTCT 57.701 33.333 0.00 0.00 32.54 2.40
5370 6418 9.298774 AGCGTTTACATCAGTACTTTAGTATTC 57.701 33.333 0.00 0.00 32.54 1.75
5371 6419 9.298774 GAGCGTTTACATCAGTACTTTAGTATT 57.701 33.333 0.00 0.00 32.54 1.89
5373 6421 8.048534 AGAGCGTTTACATCAGTACTTTAGTA 57.951 34.615 0.00 0.00 0.00 1.82
5374 6422 6.921914 AGAGCGTTTACATCAGTACTTTAGT 58.078 36.000 0.00 0.00 0.00 2.24
5406 6454 7.760340 CAGTTATCAACTACTCCCTCTGTAAAC 59.240 40.741 0.00 0.00 40.46 2.01
5407 6455 7.453752 ACAGTTATCAACTACTCCCTCTGTAAA 59.546 37.037 0.00 0.00 40.46 2.01
5408 6456 6.952358 ACAGTTATCAACTACTCCCTCTGTAA 59.048 38.462 0.00 0.00 40.46 2.41
5409 6457 6.491383 ACAGTTATCAACTACTCCCTCTGTA 58.509 40.000 0.00 0.00 40.46 2.74
5622 6775 2.844122 ATTACCTTTCGGCGAAATGC 57.156 45.000 32.28 0.00 45.38 3.56
5768 6923 6.980397 TGTATTCTGCTATGTCATACACACTG 59.020 38.462 0.00 0.00 38.04 3.66
5770 6925 7.953158 ATGTATTCTGCTATGTCATACACAC 57.047 36.000 0.00 0.00 38.04 3.82
5801 6956 1.336755 GCCACACGGTTTTGTCTCATT 59.663 47.619 0.00 0.00 33.28 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.