Multiple sequence alignment - TraesCS1D01G449100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G449100 chr1D 100.000 3290 0 0 1 3290 491605311 491602022 0.000000e+00 6076.0
1 TraesCS1D01G449100 chr1D 92.308 52 2 2 2993 3043 105339191 105339141 4.550000e-09 73.1
2 TraesCS1D01G449100 chr1D 94.872 39 2 0 3250 3288 88411153 88411115 9.860000e-06 62.1
3 TraesCS1D01G449100 chr1D 94.872 39 2 0 3250 3288 134602801 134602839 9.860000e-06 62.1
4 TraesCS1D01G449100 chr1A 90.320 1312 75 29 1329 2627 589394272 589393000 0.000000e+00 1672.0
5 TraesCS1D01G449100 chr1A 92.410 527 22 8 1 521 589395563 589395049 0.000000e+00 736.0
6 TraesCS1D01G449100 chr1A 92.308 351 15 7 2661 3002 589392818 589392471 3.820000e-134 488.0
7 TraesCS1D01G449100 chr1A 90.361 332 18 6 579 906 589395058 589394737 1.090000e-114 424.0
8 TraesCS1D01G449100 chr1A 94.068 236 13 1 1098 1333 589394627 589394393 1.120000e-94 357.0
9 TraesCS1D01G449100 chr1A 90.099 101 10 0 3113 3213 550442995 550443095 7.410000e-27 132.0
10 TraesCS1D01G449100 chr1A 98.077 52 1 0 523 574 120017809 120017860 1.260000e-14 91.6
11 TraesCS1D01G449100 chr1A 92.453 53 3 1 2994 3046 539979629 539979578 1.270000e-09 75.0
12 TraesCS1D01G449100 chr1A 90.741 54 4 1 921 973 589394738 589394685 1.640000e-08 71.3
13 TraesCS1D01G449100 chr5D 81.065 1315 198 26 1111 2400 494773821 494775109 0.000000e+00 1002.0
14 TraesCS1D01G449100 chr5D 80.423 1323 201 28 1026 2341 494761770 494763041 0.000000e+00 955.0
15 TraesCS1D01G449100 chr5D 80.512 1211 182 25 959 2151 494654302 494655476 0.000000e+00 880.0
16 TraesCS1D01G449100 chr5D 79.568 1204 192 26 1026 2223 494684780 494685935 0.000000e+00 811.0
17 TraesCS1D01G449100 chr5D 78.264 1210 199 27 1037 2241 494645932 494647082 0.000000e+00 719.0
18 TraesCS1D01G449100 chr5D 79.543 1051 173 25 1111 2131 494687207 494688245 0.000000e+00 712.0
19 TraesCS1D01G449100 chr5D 98.113 53 1 0 522 574 22835637 22835689 3.500000e-15 93.5
20 TraesCS1D01G449100 chr5B 82.012 1173 168 19 1037 2201 610965577 610966714 0.000000e+00 957.0
21 TraesCS1D01G449100 chr5B 81.710 1181 181 18 1026 2201 611323098 611324248 0.000000e+00 952.0
22 TraesCS1D01G449100 chr5B 79.651 1204 188 25 1026 2223 610922957 610924109 0.000000e+00 813.0
23 TraesCS1D01G449100 chr5B 80.349 1089 184 18 1119 2201 611077330 611078394 0.000000e+00 798.0
24 TraesCS1D01G449100 chr5B 79.719 1139 184 32 1111 2241 610867465 610868564 0.000000e+00 780.0
25 TraesCS1D01G449100 chr5B 79.807 1035 181 18 1112 2141 611045452 611046463 0.000000e+00 728.0
26 TraesCS1D01G449100 chr5B 79.675 123 17 7 754 872 610880096 610880214 7.570000e-12 82.4
27 TraesCS1D01G449100 chr5B 93.182 44 3 0 3246 3289 56568161 56568204 7.620000e-07 65.8
28 TraesCS1D01G449100 chr5A 81.435 1185 177 19 1026 2199 618602721 618603873 0.000000e+00 929.0
29 TraesCS1D01G449100 chr5A 81.192 1191 186 19 1037 2224 618270572 618271727 0.000000e+00 924.0
30 TraesCS1D01G449100 chr5A 81.701 1082 167 21 1111 2183 618478162 618479221 0.000000e+00 872.0
31 TraesCS1D01G449100 chr5A 82.482 999 144 17 1211 2201 618430317 618431292 0.000000e+00 846.0
32 TraesCS1D01G449100 chr5A 80.018 1096 182 22 1111 2201 618125934 618126997 0.000000e+00 776.0
33 TraesCS1D01G449100 chr5A 79.686 1083 177 22 1112 2186 618273284 618274331 0.000000e+00 741.0
34 TraesCS1D01G449100 chr5A 77.186 1201 224 32 1042 2223 618605501 618606670 0.000000e+00 654.0
35 TraesCS1D01G449100 chr2D 81.449 345 43 14 4 338 53772784 53772451 2.520000e-66 263.0
36 TraesCS1D01G449100 chr2D 91.228 57 2 3 2991 3046 647845675 647845729 1.270000e-09 75.0
37 TraesCS1D01G449100 chr3B 79.221 385 56 16 1 375 134062093 134062463 2.540000e-61 246.0
38 TraesCS1D01G449100 chr3B 98.077 52 1 0 523 574 61984794 61984845 1.260000e-14 91.6
39 TraesCS1D01G449100 chr3B 87.097 62 4 3 2999 3059 729951478 729951420 2.120000e-07 67.6
40 TraesCS1D01G449100 chr3B 96.970 33 0 1 3211 3243 173371521 173371490 2.000000e-03 54.7
41 TraesCS1D01G449100 chr3A 78.851 383 57 15 1 373 713969002 713969370 1.530000e-58 237.0
42 TraesCS1D01G449100 chr3A 78.400 375 59 12 13 378 41168353 41167992 1.190000e-54 224.0
43 TraesCS1D01G449100 chr3A 89.109 101 11 0 3113 3213 600026531 600026631 3.450000e-25 126.0
44 TraesCS1D01G449100 chr3A 93.878 49 3 0 2995 3043 707615482 707615434 1.270000e-09 75.0
45 TraesCS1D01G449100 chr3A 89.474 57 5 1 2987 3042 330699682 330699626 1.640000e-08 71.3
46 TraesCS1D01G449100 chr3A 91.111 45 4 0 3246 3290 187060636 187060592 9.860000e-06 62.1
47 TraesCS1D01G449100 chr3A 91.304 46 3 1 3245 3289 585036630 585036585 9.860000e-06 62.1
48 TraesCS1D01G449100 chr3D 78.961 385 52 19 4 375 548515706 548515338 5.490000e-58 235.0
49 TraesCS1D01G449100 chr3D 96.970 33 0 1 3211 3243 341502454 341502423 2.000000e-03 54.7
50 TraesCS1D01G449100 chrUn 75.543 368 49 19 4 361 340339750 340339414 3.420000e-30 143.0
51 TraesCS1D01G449100 chrUn 75.543 368 49 19 4 361 340390607 340390271 3.420000e-30 143.0
52 TraesCS1D01G449100 chrUn 75.472 371 50 19 1 361 475948673 475949012 3.420000e-30 143.0
53 TraesCS1D01G449100 chrUn 100.000 30 0 0 3215 3244 246239865 246239836 4.590000e-04 56.5
54 TraesCS1D01G449100 chrUn 100.000 30 0 0 3215 3244 295633945 295633916 4.590000e-04 56.5
55 TraesCS1D01G449100 chr1B 89.423 104 9 2 3110 3212 514570482 514570380 2.660000e-26 130.0
56 TraesCS1D01G449100 chr1B 86.239 109 15 0 3105 3213 166080607 166080715 5.770000e-23 119.0
57 TraesCS1D01G449100 chr1B 93.506 77 5 0 2912 2988 683543031 683542955 7.460000e-22 115.0
58 TraesCS1D01G449100 chr1B 81.308 107 14 4 2672 2773 615974564 615974459 7.570000e-12 82.4
59 TraesCS1D01G449100 chr1B 92.308 52 2 2 2985 3036 150541494 150541543 4.550000e-09 73.1
60 TraesCS1D01G449100 chr1B 90.909 44 4 0 3246 3289 176038806 176038849 3.550000e-05 60.2
61 TraesCS1D01G449100 chr7D 90.526 95 9 0 3119 3213 375305484 375305390 3.450000e-25 126.0
62 TraesCS1D01G449100 chr7D 94.643 56 3 0 520 575 325580881 325580936 1.630000e-13 87.9
63 TraesCS1D01G449100 chr7D 80.556 108 13 6 2672 2773 68911234 68911129 3.520000e-10 76.8
64 TraesCS1D01G449100 chr7D 100.000 29 0 0 2639 2667 66515473 66515501 2.000000e-03 54.7
65 TraesCS1D01G449100 chr7D 100.000 29 0 0 2638 2666 66544964 66544992 2.000000e-03 54.7
66 TraesCS1D01G449100 chr7D 96.875 32 1 0 2639 2670 68803332 68803301 2.000000e-03 54.7
67 TraesCS1D01G449100 chr7B 90.526 95 9 0 3119 3213 265459226 265459132 3.450000e-25 126.0
68 TraesCS1D01G449100 chr7B 94.737 57 3 0 518 574 728507217 728507273 4.520000e-14 89.8
69 TraesCS1D01G449100 chr7B 85.185 54 8 0 424 477 65318986 65318933 4.590000e-04 56.5
70 TraesCS1D01G449100 chr7B 96.875 32 1 0 2639 2670 10210433 10210402 2.000000e-03 54.7
71 TraesCS1D01G449100 chr6B 89.109 101 11 0 3113 3213 228695151 228695251 3.450000e-25 126.0
72 TraesCS1D01G449100 chr6B 95.455 44 2 0 3245 3288 684977989 684977946 1.640000e-08 71.3
73 TraesCS1D01G449100 chr6B 94.444 36 2 0 3208 3243 261659995 261659960 4.590000e-04 56.5
74 TraesCS1D01G449100 chr2B 89.109 101 11 0 3113 3213 174395767 174395867 3.450000e-25 126.0
75 TraesCS1D01G449100 chr2B 96.296 54 2 0 521 574 385563515 385563568 4.520000e-14 89.8
76 TraesCS1D01G449100 chr4B 88.350 103 12 0 3111 3213 575779059 575778957 1.240000e-24 124.0
77 TraesCS1D01G449100 chr4B 100.000 28 0 0 2640 2667 258794162 258794189 6.000000e-03 52.8
78 TraesCS1D01G449100 chr2A 98.077 52 0 1 522 573 2661326 2661276 4.520000e-14 89.8
79 TraesCS1D01G449100 chr2A 96.296 54 2 0 521 574 414994385 414994332 4.520000e-14 89.8
80 TraesCS1D01G449100 chr6A 94.643 56 3 0 520 575 273874218 273874163 1.630000e-13 87.9
81 TraesCS1D01G449100 chr6A 79.630 108 14 6 2672 2773 174385058 174385163 1.640000e-08 71.3
82 TraesCS1D01G449100 chr6A 94.444 36 2 0 3208 3243 22432924 22432889 4.590000e-04 56.5
83 TraesCS1D01G449100 chr7A 93.878 49 3 0 2994 3042 579090120 579090072 1.270000e-09 75.0
84 TraesCS1D01G449100 chr7A 93.878 49 3 0 2994 3042 688463562 688463610 1.270000e-09 75.0
85 TraesCS1D01G449100 chr4D 94.872 39 2 0 3250 3288 122978162 122978124 9.860000e-06 62.1
86 TraesCS1D01G449100 chr4D 94.872 39 2 0 3250 3288 127646568 127646606 9.860000e-06 62.1
87 TraesCS1D01G449100 chr4D 100.000 29 0 0 3215 3243 175961555 175961527 2.000000e-03 54.7
88 TraesCS1D01G449100 chr4D 96.875 32 1 0 3212 3243 263496302 263496333 2.000000e-03 54.7
89 TraesCS1D01G449100 chr6D 100.000 29 0 0 3215 3243 307327657 307327629 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G449100 chr1D 491602022 491605311 3289 True 6076.000000 6076 100.000000 1 3290 1 chr1D.!!$R3 3289
1 TraesCS1D01G449100 chr1A 589392471 589395563 3092 True 624.716667 1672 91.701333 1 3002 6 chr1A.!!$R2 3001
2 TraesCS1D01G449100 chr5D 494773821 494775109 1288 False 1002.000000 1002 81.065000 1111 2400 1 chr5D.!!$F5 1289
3 TraesCS1D01G449100 chr5D 494761770 494763041 1271 False 955.000000 955 80.423000 1026 2341 1 chr5D.!!$F4 1315
4 TraesCS1D01G449100 chr5D 494654302 494655476 1174 False 880.000000 880 80.512000 959 2151 1 chr5D.!!$F3 1192
5 TraesCS1D01G449100 chr5D 494684780 494688245 3465 False 761.500000 811 79.555500 1026 2223 2 chr5D.!!$F6 1197
6 TraesCS1D01G449100 chr5D 494645932 494647082 1150 False 719.000000 719 78.264000 1037 2241 1 chr5D.!!$F2 1204
7 TraesCS1D01G449100 chr5B 610965577 610966714 1137 False 957.000000 957 82.012000 1037 2201 1 chr5B.!!$F5 1164
8 TraesCS1D01G449100 chr5B 611323098 611324248 1150 False 952.000000 952 81.710000 1026 2201 1 chr5B.!!$F8 1175
9 TraesCS1D01G449100 chr5B 610922957 610924109 1152 False 813.000000 813 79.651000 1026 2223 1 chr5B.!!$F4 1197
10 TraesCS1D01G449100 chr5B 611077330 611078394 1064 False 798.000000 798 80.349000 1119 2201 1 chr5B.!!$F7 1082
11 TraesCS1D01G449100 chr5B 610867465 610868564 1099 False 780.000000 780 79.719000 1111 2241 1 chr5B.!!$F2 1130
12 TraesCS1D01G449100 chr5B 611045452 611046463 1011 False 728.000000 728 79.807000 1112 2141 1 chr5B.!!$F6 1029
13 TraesCS1D01G449100 chr5A 618478162 618479221 1059 False 872.000000 872 81.701000 1111 2183 1 chr5A.!!$F3 1072
14 TraesCS1D01G449100 chr5A 618430317 618431292 975 False 846.000000 846 82.482000 1211 2201 1 chr5A.!!$F2 990
15 TraesCS1D01G449100 chr5A 618270572 618274331 3759 False 832.500000 924 80.439000 1037 2224 2 chr5A.!!$F4 1187
16 TraesCS1D01G449100 chr5A 618602721 618606670 3949 False 791.500000 929 79.310500 1026 2223 2 chr5A.!!$F5 1197
17 TraesCS1D01G449100 chr5A 618125934 618126997 1063 False 776.000000 776 80.018000 1111 2201 1 chr5A.!!$F1 1090

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 534 0.034896 AGTACCCAAGACACCGCTTG 59.965 55.0 0.0 0.0 43.74 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2526 5170 0.249911 GGAGTTCTCAACGTGCACCT 60.25 55.0 12.15 0.0 36.23 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 132 0.697854 AGAGACCCGCCCCCATAATT 60.698 55.000 0.00 0.00 0.00 1.40
133 134 0.106217 AGACCCGCCCCCATAATTTG 60.106 55.000 0.00 0.00 0.00 2.32
183 184 0.470341 GTTGGATCTAGTGAGGGGGC 59.530 60.000 0.00 0.00 0.00 5.80
189 190 2.043248 TAGTGAGGGGGCTCGGAC 60.043 66.667 0.00 0.00 0.00 4.79
195 196 2.124695 GGGGGCTCGGACACATTC 60.125 66.667 0.00 0.00 0.00 2.67
220 221 2.232298 GAGGCTGGAGGAGACAACCG 62.232 65.000 0.00 0.00 34.73 4.44
225 226 0.039180 TGGAGGAGACAACCGAGCTA 59.961 55.000 0.00 0.00 34.73 3.32
231 232 2.223618 GGAGACAACCGAGCTAGATGTC 60.224 54.545 18.35 18.35 40.45 3.06
257 258 5.740224 GCATAGTCGAATCAAGGATGGAAGA 60.740 44.000 0.00 0.00 0.00 2.87
262 263 4.406972 TCGAATCAAGGATGGAAGAGATGT 59.593 41.667 0.00 0.00 0.00 3.06
265 266 5.549742 ATCAAGGATGGAAGAGATGTCTC 57.450 43.478 1.75 1.75 43.17 3.36
266 267 4.356436 TCAAGGATGGAAGAGATGTCTCA 58.644 43.478 12.21 0.00 45.21 3.27
267 268 4.967442 TCAAGGATGGAAGAGATGTCTCAT 59.033 41.667 12.21 0.02 45.21 2.90
268 269 4.959560 AGGATGGAAGAGATGTCTCATG 57.040 45.455 12.21 0.00 45.21 3.07
269 270 4.296912 AGGATGGAAGAGATGTCTCATGT 58.703 43.478 12.21 0.00 45.21 3.21
270 271 4.344679 AGGATGGAAGAGATGTCTCATGTC 59.655 45.833 12.21 6.38 45.21 3.06
271 272 4.344679 GGATGGAAGAGATGTCTCATGTCT 59.655 45.833 12.21 0.00 45.21 3.41
321 322 9.330063 CTGTCTGTATACCATGTGAAATATTGT 57.670 33.333 0.00 0.00 0.00 2.71
336 337 6.821160 TGAAATATTGTATGGAAGCGTCTCAA 59.179 34.615 0.00 1.85 0.00 3.02
339 340 3.678056 TGTATGGAAGCGTCTCAACTT 57.322 42.857 0.00 0.00 0.00 2.66
346 347 4.192317 GGAAGCGTCTCAACTTTCCATAT 58.808 43.478 0.00 0.00 37.05 1.78
398 401 2.179517 GAGAGACGTCTGGTGGCG 59.820 66.667 25.58 0.00 30.97 5.69
518 524 9.802039 AGAATCTATCTCTAACTAGTACCCAAG 57.198 37.037 0.00 0.00 30.46 3.61
519 525 9.796180 GAATCTATCTCTAACTAGTACCCAAGA 57.204 37.037 0.00 0.00 0.00 3.02
520 526 9.577222 AATCTATCTCTAACTAGTACCCAAGAC 57.423 37.037 0.00 0.00 0.00 3.01
521 527 8.098963 TCTATCTCTAACTAGTACCCAAGACA 57.901 38.462 0.00 0.00 0.00 3.41
522 528 7.992033 TCTATCTCTAACTAGTACCCAAGACAC 59.008 40.741 0.00 0.00 0.00 3.67
523 529 5.259632 TCTCTAACTAGTACCCAAGACACC 58.740 45.833 0.00 0.00 0.00 4.16
524 530 4.012374 TCTAACTAGTACCCAAGACACCG 58.988 47.826 0.00 0.00 0.00 4.94
525 531 0.893447 ACTAGTACCCAAGACACCGC 59.107 55.000 0.00 0.00 0.00 5.68
526 532 1.183549 CTAGTACCCAAGACACCGCT 58.816 55.000 0.00 0.00 0.00 5.52
527 533 1.549170 CTAGTACCCAAGACACCGCTT 59.451 52.381 0.00 0.00 0.00 4.68
528 534 0.034896 AGTACCCAAGACACCGCTTG 59.965 55.000 0.00 0.00 43.74 4.01
532 538 4.779475 CAAGACACCGCTTGGACT 57.221 55.556 0.00 0.00 41.15 3.85
533 539 3.906660 CAAGACACCGCTTGGACTA 57.093 52.632 0.00 0.00 41.15 2.59
534 540 2.163818 CAAGACACCGCTTGGACTAA 57.836 50.000 0.00 0.00 41.15 2.24
535 541 2.069273 CAAGACACCGCTTGGACTAAG 58.931 52.381 0.00 0.00 41.15 2.18
556 562 4.939509 GCGGTTAGCTATCTCAAAAACA 57.060 40.909 0.00 0.00 44.04 2.83
557 563 5.291293 GCGGTTAGCTATCTCAAAAACAA 57.709 39.130 0.00 0.00 44.04 2.83
558 564 5.880341 GCGGTTAGCTATCTCAAAAACAAT 58.120 37.500 0.00 0.00 44.04 2.71
559 565 5.965918 GCGGTTAGCTATCTCAAAAACAATC 59.034 40.000 0.00 0.00 44.04 2.67
560 566 6.403200 GCGGTTAGCTATCTCAAAAACAATCA 60.403 38.462 0.00 0.00 44.04 2.57
561 567 7.526608 CGGTTAGCTATCTCAAAAACAATCAA 58.473 34.615 0.00 0.00 0.00 2.57
562 568 7.481798 CGGTTAGCTATCTCAAAAACAATCAAC 59.518 37.037 0.00 0.00 0.00 3.18
563 569 8.296713 GGTTAGCTATCTCAAAAACAATCAACA 58.703 33.333 0.00 0.00 0.00 3.33
564 570 9.677567 GTTAGCTATCTCAAAAACAATCAACAA 57.322 29.630 0.00 0.00 0.00 2.83
565 571 9.677567 TTAGCTATCTCAAAAACAATCAACAAC 57.322 29.630 0.00 0.00 0.00 3.32
566 572 7.945134 AGCTATCTCAAAAACAATCAACAACT 58.055 30.769 0.00 0.00 0.00 3.16
567 573 8.078596 AGCTATCTCAAAAACAATCAACAACTC 58.921 33.333 0.00 0.00 0.00 3.01
568 574 7.862372 GCTATCTCAAAAACAATCAACAACTCA 59.138 33.333 0.00 0.00 0.00 3.41
569 575 9.734620 CTATCTCAAAAACAATCAACAACTCAA 57.265 29.630 0.00 0.00 0.00 3.02
571 577 8.824159 TCTCAAAAACAATCAACAACTCAAAA 57.176 26.923 0.00 0.00 0.00 2.44
572 578 9.265901 TCTCAAAAACAATCAACAACTCAAAAA 57.734 25.926 0.00 0.00 0.00 1.94
694 703 3.603343 GCAAAGTTTTGTTTGTGCAAAGC 59.397 39.130 6.48 0.00 39.27 3.51
798 807 3.990959 TGAAAAGGTTTTGTTTGCCCT 57.009 38.095 0.00 0.00 0.00 5.19
800 809 2.708216 AAAGGTTTTGTTTGCCCTGG 57.292 45.000 0.00 0.00 0.00 4.45
801 810 1.872773 AAGGTTTTGTTTGCCCTGGA 58.127 45.000 0.00 0.00 0.00 3.86
802 811 1.119684 AGGTTTTGTTTGCCCTGGAC 58.880 50.000 0.00 0.00 0.00 4.02
803 812 1.119684 GGTTTTGTTTGCCCTGGACT 58.880 50.000 0.00 0.00 0.00 3.85
811 820 0.984230 TTGCCCTGGACTCTACCTTG 59.016 55.000 0.00 0.00 0.00 3.61
822 831 0.981183 TCTACCTTGTCCGTTGGCAT 59.019 50.000 0.00 0.00 0.00 4.40
854 863 2.455032 CTCCTCGTGATGATGAACGAC 58.545 52.381 0.00 0.00 43.40 4.34
896 905 2.589442 GTGTGGACCGGACGCAAA 60.589 61.111 9.46 0.00 0.00 3.68
902 911 0.655733 GGACCGGACGCAAACATATG 59.344 55.000 9.46 0.00 0.00 1.78
906 915 2.166870 ACCGGACGCAAACATATGTAGA 59.833 45.455 9.46 0.00 0.00 2.59
907 916 3.181469 ACCGGACGCAAACATATGTAGAT 60.181 43.478 9.46 0.00 0.00 1.98
910 919 4.295870 GGACGCAAACATATGTAGATCGA 58.704 43.478 9.21 0.00 0.00 3.59
911 920 4.383052 GGACGCAAACATATGTAGATCGAG 59.617 45.833 9.21 1.02 0.00 4.04
912 921 4.299155 ACGCAAACATATGTAGATCGAGG 58.701 43.478 9.21 0.00 0.00 4.63
913 922 4.202121 ACGCAAACATATGTAGATCGAGGT 60.202 41.667 9.21 0.00 0.00 3.85
914 923 4.148871 CGCAAACATATGTAGATCGAGGTG 59.851 45.833 9.21 0.00 0.00 4.00
915 924 5.050490 GCAAACATATGTAGATCGAGGTGT 58.950 41.667 9.21 0.00 0.00 4.16
916 925 5.050769 GCAAACATATGTAGATCGAGGTGTG 60.051 44.000 9.21 0.00 0.00 3.82
917 926 6.273071 CAAACATATGTAGATCGAGGTGTGA 58.727 40.000 9.21 0.00 0.00 3.58
918 927 6.465439 AACATATGTAGATCGAGGTGTGAA 57.535 37.500 9.21 0.00 0.00 3.18
919 928 6.078202 ACATATGTAGATCGAGGTGTGAAG 57.922 41.667 6.56 0.00 0.00 3.02
920 929 5.828328 ACATATGTAGATCGAGGTGTGAAGA 59.172 40.000 6.56 0.00 0.00 2.87
921 930 4.909696 ATGTAGATCGAGGTGTGAAGAG 57.090 45.455 0.00 0.00 0.00 2.85
922 931 3.017442 TGTAGATCGAGGTGTGAAGAGG 58.983 50.000 0.00 0.00 0.00 3.69
923 932 0.820871 AGATCGAGGTGTGAAGAGGC 59.179 55.000 0.00 0.00 0.00 4.70
924 933 0.179097 GATCGAGGTGTGAAGAGGCC 60.179 60.000 0.00 0.00 0.00 5.19
925 934 0.904865 ATCGAGGTGTGAAGAGGCCA 60.905 55.000 5.01 0.00 0.00 5.36
926 935 1.079543 CGAGGTGTGAAGAGGCCAG 60.080 63.158 5.01 0.00 0.00 4.85
974 983 8.188139 GTGCACTTTCCTCTCTCTATATATAGC 58.812 40.741 10.32 0.43 0.00 2.97
987 996 9.942850 TCTCTATATATAGCTAGCTAGATGCAG 57.057 37.037 32.44 27.27 45.94 4.41
994 1003 3.564644 AGCTAGCTAGATGCAGCAAAATG 59.435 43.478 25.15 0.00 44.35 2.32
1000 1009 3.323751 AGATGCAGCAAAATGTTTCCC 57.676 42.857 4.07 0.00 0.00 3.97
1014 1023 3.858135 TGTTTCCCCTCACTAGTCTTCT 58.142 45.455 0.00 0.00 0.00 2.85
1016 1025 5.017490 TGTTTCCCCTCACTAGTCTTCTAG 58.983 45.833 0.00 1.37 46.43 2.43
1017 1026 5.222275 TGTTTCCCCTCACTAGTCTTCTAGA 60.222 44.000 8.91 0.00 44.52 2.43
1018 1027 4.781775 TCCCCTCACTAGTCTTCTAGAG 57.218 50.000 8.91 0.00 44.52 2.43
1022 1031 6.043474 TCCCCTCACTAGTCTTCTAGAGTATC 59.957 46.154 8.91 0.00 44.52 2.24
1026 1035 6.593807 TCACTAGTCTTCTAGAGTATCCCAC 58.406 44.000 8.91 0.00 44.52 4.61
1034 1043 3.232279 GAGTATCCCACTCCAGGCT 57.768 57.895 0.00 0.00 46.94 4.58
1069 1085 2.537401 GCAGAGCAATGCAAGATTTCC 58.463 47.619 8.35 0.00 45.77 3.13
1073 1089 1.547372 AGCAATGCAAGATTTCCGCTT 59.453 42.857 8.35 0.00 0.00 4.68
1081 1103 1.755179 AGATTTCCGCTTCCATGGTG 58.245 50.000 12.58 7.38 0.00 4.17
1086 1108 2.401766 CCGCTTCCATGGTGTCTGC 61.402 63.158 12.58 9.05 0.00 4.26
1090 1112 1.386533 CTTCCATGGTGTCTGCATCC 58.613 55.000 12.58 0.00 0.00 3.51
1152 1189 4.662179 AGATGGATATTCAAGAGCCAAGGA 59.338 41.667 0.00 0.00 31.53 3.36
1365 1535 1.084289 GAACCGGTGCCTTCATACAC 58.916 55.000 8.52 0.00 36.03 2.90
1373 1543 0.529119 GCCTTCATACACCCGTACCG 60.529 60.000 0.00 0.00 0.00 4.02
1396 1567 3.304794 CCCGCTCTATAGAAACCTTCTCG 60.305 52.174 3.57 0.00 41.14 4.04
1409 1580 8.101339 AGAAACCTTCTCGAGGAAAGGTTCTT 62.101 42.308 34.12 25.72 45.11 2.52
1410 1581 9.779681 AGAAACCTTCTCGAGGAAAGGTTCTTC 62.780 44.444 34.12 29.55 45.11 2.87
1508 1679 2.048597 GGTGCGATGTCACCGTCA 60.049 61.111 0.00 0.00 45.95 4.35
1509 1680 1.447838 GGTGCGATGTCACCGTCAT 60.448 57.895 0.00 0.00 45.95 3.06
1510 1681 1.695893 GGTGCGATGTCACCGTCATG 61.696 60.000 0.00 0.00 45.95 3.07
1511 1682 0.735978 GTGCGATGTCACCGTCATGA 60.736 55.000 0.00 0.00 0.00 3.07
1512 1683 0.037790 TGCGATGTCACCGTCATGAA 60.038 50.000 0.00 0.00 0.00 2.57
1513 1684 0.647410 GCGATGTCACCGTCATGAAG 59.353 55.000 0.00 0.00 0.00 3.02
1514 1685 1.280982 CGATGTCACCGTCATGAAGG 58.719 55.000 24.13 24.13 35.99 3.46
1515 1686 1.135112 CGATGTCACCGTCATGAAGGA 60.135 52.381 31.07 11.58 33.97 3.36
1516 1687 2.544685 GATGTCACCGTCATGAAGGAG 58.455 52.381 31.07 23.85 33.97 3.69
1627 1819 2.328099 CCAAGTTGGCGGACAGAGC 61.328 63.158 9.46 0.00 0.00 4.09
1628 1820 1.597854 CAAGTTGGCGGACAGAGCA 60.598 57.895 0.00 0.00 36.08 4.26
1705 1899 2.899339 GGCGCCATGAAGGAGAGC 60.899 66.667 24.80 0.00 40.01 4.09
1743 1940 6.825213 CCTATTGAAATCTGTGACATGGAAGA 59.175 38.462 0.00 0.00 0.00 2.87
1796 1993 3.935024 CCGATTCGGTCCCTCTGA 58.065 61.111 17.08 0.00 42.73 3.27
1797 1994 1.437986 CCGATTCGGTCCCTCTGAC 59.562 63.158 17.08 0.00 42.73 3.51
1798 1995 1.320344 CCGATTCGGTCCCTCTGACA 61.320 60.000 17.08 0.00 46.38 3.58
1799 1996 0.179134 CGATTCGGTCCCTCTGACAC 60.179 60.000 0.00 0.00 46.38 3.67
1800 1997 1.187087 GATTCGGTCCCTCTGACACT 58.813 55.000 0.00 0.00 46.38 3.55
1888 2103 3.243670 TGAAGCAGATATGCGAGGAGAAG 60.244 47.826 6.68 0.00 40.27 2.85
1896 2111 1.664965 GCGAGGAGAAGTTGTGCGT 60.665 57.895 0.00 0.00 0.00 5.24
2135 4747 4.763793 AGGAGGTTGTCATGAAAATGTGAG 59.236 41.667 0.61 0.00 0.00 3.51
2209 4833 9.896263 GTACTAATGGTTATGCTAGTACTTCTC 57.104 37.037 0.00 0.00 41.50 2.87
2223 4848 3.567478 ACTTCTCTATCCATGGTTGCC 57.433 47.619 12.58 0.00 0.00 4.52
2250 4879 9.702494 TGAATGTTTACAACAAATATGCAATCA 57.298 25.926 0.00 0.00 45.86 2.57
2256 4885 6.450845 ACAACAAATATGCAATCAACAACG 57.549 33.333 0.00 0.00 0.00 4.10
2286 4915 8.697507 TCTTTTTCCTTGCTAGAGAAAGAAAT 57.302 30.769 13.54 0.00 32.23 2.17
2287 4916 9.793259 TCTTTTTCCTTGCTAGAGAAAGAAATA 57.207 29.630 13.54 3.94 32.23 1.40
2343 4977 2.684001 TGTATGGTTGGACGGATGTC 57.316 50.000 0.00 0.00 44.72 3.06
2400 5037 4.096532 TCTGTATGTTCAGGCGAGTAGAAG 59.903 45.833 0.00 0.00 36.25 2.85
2401 5038 3.762288 TGTATGTTCAGGCGAGTAGAAGT 59.238 43.478 0.00 0.00 0.00 3.01
2402 5039 4.945543 TGTATGTTCAGGCGAGTAGAAGTA 59.054 41.667 0.00 0.00 0.00 2.24
2422 5059 2.350522 AGTATTCTTGCAGTTCTGCCG 58.649 47.619 19.91 12.12 0.00 5.69
2431 5068 3.088532 TGCAGTTCTGCCGGATAAAATT 58.911 40.909 19.91 0.00 0.00 1.82
2432 5069 4.265893 TGCAGTTCTGCCGGATAAAATTA 58.734 39.130 19.91 0.00 0.00 1.40
2434 5071 5.184096 TGCAGTTCTGCCGGATAAAATTAAA 59.816 36.000 19.91 0.00 0.00 1.52
2435 5072 6.096695 GCAGTTCTGCCGGATAAAATTAAAA 58.903 36.000 5.05 0.00 0.00 1.52
2472 5116 4.464112 GCGTGTTACTGAAATCAGAAACC 58.536 43.478 16.93 3.08 46.59 3.27
2478 5122 6.201425 TGTTACTGAAATCAGAAACCACGTAC 59.799 38.462 16.93 0.77 46.59 3.67
2508 5152 1.821216 AAATGTAGCAAGTCACCGGG 58.179 50.000 6.32 0.00 0.00 5.73
2510 5154 1.204146 ATGTAGCAAGTCACCGGGAT 58.796 50.000 6.32 0.00 0.00 3.85
2523 5167 2.350458 CGGGATTTTGGTGCCCAGG 61.350 63.158 0.00 0.00 42.14 4.45
2525 5169 1.257750 GGGATTTTGGTGCCCAGGTC 61.258 60.000 0.00 0.00 41.64 3.85
2526 5170 0.541764 GGATTTTGGTGCCCAGGTCA 60.542 55.000 0.00 0.00 33.81 4.02
2550 5194 1.728971 GCACGTTGAGAACTCCATCTG 59.271 52.381 0.00 0.00 0.00 2.90
2584 5228 6.306356 CACAAAATCATTTTCTGATGACGGAC 59.694 38.462 0.00 0.00 44.03 4.79
2588 5232 4.245660 TCATTTTCTGATGACGGACTGAC 58.754 43.478 0.00 0.00 31.35 3.51
2590 5234 1.924731 TTCTGATGACGGACTGACCT 58.075 50.000 0.00 0.00 36.31 3.85
2602 5246 2.569404 GGACTGACCTGGAGAATGAACT 59.431 50.000 0.00 0.00 35.41 3.01
2605 5249 1.980765 TGACCTGGAGAATGAACTGCT 59.019 47.619 0.00 0.00 0.00 4.24
2627 5271 1.237285 AACCACCGCATCACTCTTGC 61.237 55.000 0.00 0.00 36.74 4.01
2628 5272 1.672030 CCACCGCATCACTCTTGCA 60.672 57.895 0.00 0.00 40.14 4.08
2629 5273 1.642037 CCACCGCATCACTCTTGCAG 61.642 60.000 0.00 0.00 40.14 4.41
2632 5276 1.364626 CCGCATCACTCTTGCAGTCC 61.365 60.000 0.00 0.00 40.14 3.85
2633 5277 0.390866 CGCATCACTCTTGCAGTCCT 60.391 55.000 0.00 0.00 40.14 3.85
2634 5278 1.085091 GCATCACTCTTGCAGTCCTG 58.915 55.000 0.00 0.00 39.90 3.86
2648 5292 3.806380 CAGTCCTGCATGCTCTTATCTT 58.194 45.455 20.33 0.00 0.00 2.40
2649 5293 4.197750 CAGTCCTGCATGCTCTTATCTTT 58.802 43.478 20.33 0.00 0.00 2.52
2651 5295 4.163839 AGTCCTGCATGCTCTTATCTTTCT 59.836 41.667 20.33 1.22 0.00 2.52
2652 5296 4.511082 GTCCTGCATGCTCTTATCTTTCTC 59.489 45.833 20.33 0.00 0.00 2.87
2653 5297 4.408270 TCCTGCATGCTCTTATCTTTCTCT 59.592 41.667 20.33 0.00 0.00 3.10
2654 5298 5.600069 TCCTGCATGCTCTTATCTTTCTCTA 59.400 40.000 20.33 0.00 0.00 2.43
2655 5299 5.695816 CCTGCATGCTCTTATCTTTCTCTAC 59.304 44.000 20.33 0.00 0.00 2.59
2658 5302 6.323482 TGCATGCTCTTATCTTTCTCTACTCT 59.677 38.462 20.33 0.00 0.00 3.24
2663 5307 7.147759 TGCTCTTATCTTTCTCTACTCTGCATT 60.148 37.037 0.00 0.00 0.00 3.56
2665 5309 8.298729 TCTTATCTTTCTCTACTCTGCATTGA 57.701 34.615 0.00 0.00 0.00 2.57
2667 5311 4.738124 TCTTTCTCTACTCTGCATTGACG 58.262 43.478 0.00 0.00 0.00 4.35
2669 5313 4.521130 TTCTCTACTCTGCATTGACGTT 57.479 40.909 0.00 0.00 0.00 3.99
2688 5484 2.163818 TAGCAACCGTTGGAGAACTG 57.836 50.000 13.12 0.00 0.00 3.16
2715 5511 4.151798 GCAGAATTAGCGAACAAGACAAC 58.848 43.478 0.00 0.00 0.00 3.32
2788 5585 5.114764 TGGATCACATCAGGCTATTCAAA 57.885 39.130 0.00 0.00 0.00 2.69
2794 5591 3.944015 ACATCAGGCTATTCAAAGCAGTC 59.056 43.478 0.00 0.00 44.64 3.51
2808 5615 2.301346 AGCAGTCCAACCAAACAGAAG 58.699 47.619 0.00 0.00 0.00 2.85
2809 5616 2.092429 AGCAGTCCAACCAAACAGAAGA 60.092 45.455 0.00 0.00 0.00 2.87
2810 5617 2.687935 GCAGTCCAACCAAACAGAAGAA 59.312 45.455 0.00 0.00 0.00 2.52
2813 5620 4.399303 CAGTCCAACCAAACAGAAGAAACT 59.601 41.667 0.00 0.00 0.00 2.66
2858 5665 7.174946 CCAATTAAGTGCCAAAGTAGAGAAAGA 59.825 37.037 0.00 0.00 0.00 2.52
2877 5684 9.139174 GAGAAAGATAAGAGAACTTCTGACTTG 57.861 37.037 0.00 0.00 35.91 3.16
3028 5835 7.930325 ACTCCCTCCGTAAACTAATATAAAAGC 59.070 37.037 0.00 0.00 0.00 3.51
3029 5836 6.925165 TCCCTCCGTAAACTAATATAAAAGCG 59.075 38.462 0.00 0.00 0.00 4.68
3032 5839 8.606602 CCTCCGTAAACTAATATAAAAGCGTTT 58.393 33.333 2.53 2.53 0.00 3.60
3068 5875 3.983044 ATAACAGTCCAGACAACTCCC 57.017 47.619 0.00 0.00 0.00 4.30
3069 5876 1.507140 AACAGTCCAGACAACTCCCA 58.493 50.000 0.00 0.00 0.00 4.37
3070 5877 1.507140 ACAGTCCAGACAACTCCCAA 58.493 50.000 0.00 0.00 0.00 4.12
3071 5878 1.843851 ACAGTCCAGACAACTCCCAAA 59.156 47.619 0.00 0.00 0.00 3.28
3073 5880 2.618709 CAGTCCAGACAACTCCCAAAAC 59.381 50.000 0.00 0.00 0.00 2.43
3074 5881 1.954382 GTCCAGACAACTCCCAAAACC 59.046 52.381 0.00 0.00 0.00 3.27
3075 5882 1.850345 TCCAGACAACTCCCAAAACCT 59.150 47.619 0.00 0.00 0.00 3.50
3076 5883 3.050089 TCCAGACAACTCCCAAAACCTA 58.950 45.455 0.00 0.00 0.00 3.08
3078 5885 3.568430 CCAGACAACTCCCAAAACCTAAC 59.432 47.826 0.00 0.00 0.00 2.34
3079 5886 4.461198 CAGACAACTCCCAAAACCTAACT 58.539 43.478 0.00 0.00 0.00 2.24
3080 5887 4.275936 CAGACAACTCCCAAAACCTAACTG 59.724 45.833 0.00 0.00 0.00 3.16
3081 5888 4.079958 AGACAACTCCCAAAACCTAACTGT 60.080 41.667 0.00 0.00 0.00 3.55
3082 5889 4.204799 ACAACTCCCAAAACCTAACTGTC 58.795 43.478 0.00 0.00 0.00 3.51
3083 5890 4.079958 ACAACTCCCAAAACCTAACTGTCT 60.080 41.667 0.00 0.00 0.00 3.41
3084 5891 4.086706 ACTCCCAAAACCTAACTGTCTG 57.913 45.455 0.00 0.00 0.00 3.51
3086 5893 4.351111 ACTCCCAAAACCTAACTGTCTGAT 59.649 41.667 0.00 0.00 0.00 2.90
3087 5894 4.651778 TCCCAAAACCTAACTGTCTGATG 58.348 43.478 0.00 0.00 0.00 3.07
3089 5896 5.014123 TCCCAAAACCTAACTGTCTGATGAT 59.986 40.000 0.00 0.00 0.00 2.45
3091 5898 6.884295 CCCAAAACCTAACTGTCTGATGATTA 59.116 38.462 0.00 0.00 0.00 1.75
3092 5899 7.066284 CCCAAAACCTAACTGTCTGATGATTAG 59.934 40.741 0.00 0.00 0.00 1.73
3093 5900 7.414540 CCAAAACCTAACTGTCTGATGATTAGC 60.415 40.741 0.00 0.00 0.00 3.09
3094 5901 5.939764 ACCTAACTGTCTGATGATTAGCA 57.060 39.130 0.00 0.00 0.00 3.49
3095 5902 6.299805 ACCTAACTGTCTGATGATTAGCAA 57.700 37.500 0.00 0.00 0.00 3.91
3096 5903 6.109359 ACCTAACTGTCTGATGATTAGCAAC 58.891 40.000 0.00 0.00 0.00 4.17
3097 5904 6.108687 CCTAACTGTCTGATGATTAGCAACA 58.891 40.000 0.00 0.00 0.00 3.33
3101 5908 3.686241 TGTCTGATGATTAGCAACACAGC 59.314 43.478 0.00 0.00 0.00 4.40
3104 5911 3.678289 TGATGATTAGCAACACAGCAGT 58.322 40.909 0.00 0.00 36.85 4.40
3105 5912 4.074259 TGATGATTAGCAACACAGCAGTT 58.926 39.130 0.00 0.00 36.85 3.16
3112 5919 2.787601 CAACACAGCAGTTGCAGAAT 57.212 45.000 6.90 0.00 41.95 2.40
3113 5920 3.902261 CAACACAGCAGTTGCAGAATA 57.098 42.857 6.90 0.00 41.95 1.75
3114 5921 3.558505 CAACACAGCAGTTGCAGAATAC 58.441 45.455 6.90 0.00 41.95 1.89
3115 5922 3.131709 ACACAGCAGTTGCAGAATACT 57.868 42.857 6.90 0.00 45.16 2.12
3116 5923 4.271696 ACACAGCAGTTGCAGAATACTA 57.728 40.909 6.90 0.00 45.16 1.82
3117 5924 4.836825 ACACAGCAGTTGCAGAATACTAT 58.163 39.130 6.90 0.00 45.16 2.12
3118 5925 4.872691 ACACAGCAGTTGCAGAATACTATC 59.127 41.667 6.90 0.00 45.16 2.08
3119 5926 5.114780 CACAGCAGTTGCAGAATACTATCT 58.885 41.667 6.90 0.00 45.16 1.98
3120 5927 5.233902 CACAGCAGTTGCAGAATACTATCTC 59.766 44.000 6.90 0.00 45.16 2.75
3121 5928 4.749099 CAGCAGTTGCAGAATACTATCTCC 59.251 45.833 6.90 0.00 45.16 3.71
3122 5929 3.738282 GCAGTTGCAGAATACTATCTCCG 59.262 47.826 0.00 0.00 41.59 4.63
3123 5930 4.737946 GCAGTTGCAGAATACTATCTCCGT 60.738 45.833 0.00 0.00 41.59 4.69
3124 5931 5.507482 GCAGTTGCAGAATACTATCTCCGTA 60.507 44.000 0.00 0.00 41.59 4.02
3125 5932 6.682746 CAGTTGCAGAATACTATCTCCGTAT 58.317 40.000 0.00 0.00 0.00 3.06
3126 5933 6.584184 CAGTTGCAGAATACTATCTCCGTATG 59.416 42.308 0.00 0.00 0.00 2.39
3127 5934 6.490381 AGTTGCAGAATACTATCTCCGTATGA 59.510 38.462 0.00 0.00 0.00 2.15
3128 5935 6.894339 TGCAGAATACTATCTCCGTATGAA 57.106 37.500 0.00 0.00 0.00 2.57
3129 5936 7.284919 TGCAGAATACTATCTCCGTATGAAA 57.715 36.000 0.00 0.00 0.00 2.69
3130 5937 7.722363 TGCAGAATACTATCTCCGTATGAAAA 58.278 34.615 0.00 0.00 0.00 2.29
3131 5938 8.367911 TGCAGAATACTATCTCCGTATGAAAAT 58.632 33.333 0.00 0.00 0.00 1.82
3132 5939 9.856488 GCAGAATACTATCTCCGTATGAAAATA 57.144 33.333 0.00 0.00 0.00 1.40
3139 5946 8.142551 ACTATCTCCGTATGAAAATACTTGTCC 58.857 37.037 0.00 0.00 0.00 4.02
3140 5947 6.540438 TCTCCGTATGAAAATACTTGTCCT 57.460 37.500 0.00 0.00 0.00 3.85
3141 5948 7.649533 TCTCCGTATGAAAATACTTGTCCTA 57.350 36.000 0.00 0.00 0.00 2.94
3142 5949 7.713750 TCTCCGTATGAAAATACTTGTCCTAG 58.286 38.462 0.00 0.00 0.00 3.02
3143 5950 7.558807 TCTCCGTATGAAAATACTTGTCCTAGA 59.441 37.037 0.00 0.00 0.00 2.43
3144 5951 8.070034 TCCGTATGAAAATACTTGTCCTAGAA 57.930 34.615 0.00 0.00 0.00 2.10
3145 5952 8.533657 TCCGTATGAAAATACTTGTCCTAGAAA 58.466 33.333 0.00 0.00 0.00 2.52
3146 5953 9.326413 CCGTATGAAAATACTTGTCCTAGAAAT 57.674 33.333 0.00 0.00 0.00 2.17
3150 5957 9.927081 ATGAAAATACTTGTCCTAGAAATGGAT 57.073 29.630 0.00 0.00 35.87 3.41
3156 5963 9.838339 ATACTTGTCCTAGAAATGGATAAAGTG 57.162 33.333 16.83 1.94 40.42 3.16
3157 5964 7.112779 ACTTGTCCTAGAAATGGATAAAGTGG 58.887 38.462 10.77 0.00 39.59 4.00
3158 5965 6.884472 TGTCCTAGAAATGGATAAAGTGGA 57.116 37.500 0.00 0.00 35.87 4.02
3159 5966 7.451731 TGTCCTAGAAATGGATAAAGTGGAT 57.548 36.000 0.00 0.00 35.87 3.41
3160 5967 7.282585 TGTCCTAGAAATGGATAAAGTGGATG 58.717 38.462 0.00 0.00 35.87 3.51
3161 5968 7.092444 TGTCCTAGAAATGGATAAAGTGGATGT 60.092 37.037 0.00 0.00 35.87 3.06
3162 5969 8.429641 GTCCTAGAAATGGATAAAGTGGATGTA 58.570 37.037 0.00 0.00 35.87 2.29
3163 5970 9.170890 TCCTAGAAATGGATAAAGTGGATGTAT 57.829 33.333 0.00 0.00 0.00 2.29
3164 5971 9.442047 CCTAGAAATGGATAAAGTGGATGTATC 57.558 37.037 0.00 0.00 0.00 2.24
3234 6041 9.627123 ATTTCGATTTTATCCATTTCTAGGACA 57.373 29.630 0.00 0.00 38.13 4.02
3235 6042 9.456147 TTTCGATTTTATCCATTTCTAGGACAA 57.544 29.630 0.00 0.00 38.13 3.18
3236 6043 8.662781 TCGATTTTATCCATTTCTAGGACAAG 57.337 34.615 0.00 0.00 38.13 3.16
3237 6044 8.265055 TCGATTTTATCCATTTCTAGGACAAGT 58.735 33.333 0.00 0.00 38.13 3.16
3238 6045 9.542462 CGATTTTATCCATTTCTAGGACAAGTA 57.458 33.333 0.00 0.00 38.13 2.24
3243 6050 9.542462 TTATCCATTTCTAGGACAAGTATTTCG 57.458 33.333 0.00 0.00 38.13 3.46
3244 6051 7.177832 TCCATTTCTAGGACAAGTATTTCGA 57.822 36.000 0.00 0.00 0.00 3.71
3245 6052 7.792032 TCCATTTCTAGGACAAGTATTTCGAT 58.208 34.615 0.00 0.00 0.00 3.59
3246 6053 8.265055 TCCATTTCTAGGACAAGTATTTCGATT 58.735 33.333 0.00 0.00 0.00 3.34
3247 6054 8.893727 CCATTTCTAGGACAAGTATTTCGATTT 58.106 33.333 0.00 0.00 0.00 2.17
3252 6059 9.760077 TCTAGGACAAGTATTTCGATTTTATCC 57.240 33.333 0.00 0.00 0.00 2.59
3253 6060 9.542462 CTAGGACAAGTATTTCGATTTTATCCA 57.458 33.333 0.00 0.00 0.00 3.41
3254 6061 8.980481 AGGACAAGTATTTCGATTTTATCCAT 57.020 30.769 0.00 0.00 0.00 3.41
3255 6062 9.408648 AGGACAAGTATTTCGATTTTATCCATT 57.591 29.630 0.00 0.00 0.00 3.16
3258 6065 9.301153 ACAAGTATTTCGATTTTATCCATTTGC 57.699 29.630 0.00 0.00 0.00 3.68
3259 6066 9.299963 CAAGTATTTCGATTTTATCCATTTGCA 57.700 29.630 0.00 0.00 0.00 4.08
3260 6067 9.520204 AAGTATTTCGATTTTATCCATTTGCAG 57.480 29.630 0.00 0.00 0.00 4.41
3261 6068 8.137437 AGTATTTCGATTTTATCCATTTGCAGG 58.863 33.333 0.00 0.00 0.00 4.85
3262 6069 6.522625 TTTCGATTTTATCCATTTGCAGGA 57.477 33.333 0.00 0.00 39.97 3.86
3263 6070 5.499139 TCGATTTTATCCATTTGCAGGAC 57.501 39.130 0.00 0.00 38.13 3.85
3264 6071 4.946772 TCGATTTTATCCATTTGCAGGACA 59.053 37.500 0.00 0.00 38.13 4.02
3265 6072 5.417266 TCGATTTTATCCATTTGCAGGACAA 59.583 36.000 0.00 0.00 38.13 3.18
3271 6078 7.716799 TTATCCATTTGCAGGACAAGTATTT 57.283 32.000 0.00 0.00 40.06 1.40
3272 6079 5.643379 TCCATTTGCAGGACAAGTATTTC 57.357 39.130 0.00 0.00 40.06 2.17
3273 6080 4.462483 TCCATTTGCAGGACAAGTATTTCC 59.538 41.667 0.00 0.00 40.06 3.13
3277 6084 2.007608 GCAGGACAAGTATTTCCGGAC 58.992 52.381 1.83 0.00 36.95 4.79
3284 6091 1.047034 AGTATTTCCGGACGGAGGGG 61.047 60.000 13.64 0.00 46.06 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.179056 GAACCCTGCTTATGCGCCTA 60.179 55.000 4.18 0.00 43.34 3.93
10 11 1.766143 CTCGAACCCTGCTTATGCGC 61.766 60.000 0.00 0.00 43.34 6.09
62 63 0.815095 CTCCCAAAACCATAACCGGC 59.185 55.000 0.00 0.00 0.00 6.13
63 64 1.272258 ACCTCCCAAAACCATAACCGG 60.272 52.381 0.00 0.00 0.00 5.28
64 65 2.209690 ACCTCCCAAAACCATAACCG 57.790 50.000 0.00 0.00 0.00 4.44
131 132 0.884704 GTGCTCAAGCTCGTTCCCAA 60.885 55.000 3.32 0.00 42.66 4.12
133 134 3.567473 GTGCTCAAGCTCGTTCCC 58.433 61.111 3.32 0.00 42.66 3.97
153 154 6.647229 TCACTAGATCCAACTACGTTCTCTA 58.353 40.000 0.00 0.00 0.00 2.43
171 172 2.128507 GTCCGAGCCCCCTCACTAG 61.129 68.421 0.00 0.00 38.00 2.57
183 184 2.738846 CCTCAACAAGAATGTGTCCGAG 59.261 50.000 0.00 0.00 40.46 4.63
189 190 2.486982 CTCCAGCCTCAACAAGAATGTG 59.513 50.000 0.00 0.00 40.46 3.21
195 196 0.979665 TCTCCTCCAGCCTCAACAAG 59.020 55.000 0.00 0.00 0.00 3.16
220 221 2.413502 CGACTATGCCGACATCTAGCTC 60.414 54.545 0.00 0.00 37.74 4.09
225 226 2.623416 TGATTCGACTATGCCGACATCT 59.377 45.455 0.00 0.00 37.74 2.90
231 232 2.509052 TCCTTGATTCGACTATGCCG 57.491 50.000 0.00 0.00 0.00 5.69
233 234 3.995199 TCCATCCTTGATTCGACTATGC 58.005 45.455 0.00 0.00 0.00 3.14
262 263 4.061131 TCCCCTTTGTCTAGACATGAGA 57.939 45.455 25.68 14.97 41.52 3.27
265 266 4.383552 CCTCTTCCCCTTTGTCTAGACATG 60.384 50.000 25.68 19.73 41.52 3.21
266 267 3.777522 CCTCTTCCCCTTTGTCTAGACAT 59.222 47.826 25.68 0.00 41.52 3.06
267 268 3.173965 CCTCTTCCCCTTTGTCTAGACA 58.826 50.000 21.74 21.74 39.98 3.41
268 269 3.196039 GTCCTCTTCCCCTTTGTCTAGAC 59.804 52.174 16.32 16.32 0.00 2.59
269 270 3.181410 TGTCCTCTTCCCCTTTGTCTAGA 60.181 47.826 0.00 0.00 0.00 2.43
270 271 3.173965 TGTCCTCTTCCCCTTTGTCTAG 58.826 50.000 0.00 0.00 0.00 2.43
271 272 3.173965 CTGTCCTCTTCCCCTTTGTCTA 58.826 50.000 0.00 0.00 0.00 2.59
321 322 3.007506 TGGAAAGTTGAGACGCTTCCATA 59.992 43.478 10.26 0.00 42.60 2.74
398 401 6.897259 TTGCTAACAACCTATCGATGTAAC 57.103 37.500 8.54 0.00 0.00 2.50
493 499 9.796180 TCTTGGGTACTAGTTAGAGATAGATTC 57.204 37.037 0.00 0.00 0.00 2.52
505 511 1.274447 GCGGTGTCTTGGGTACTAGTT 59.726 52.381 0.00 0.00 0.00 2.24
506 512 0.893447 GCGGTGTCTTGGGTACTAGT 59.107 55.000 0.00 0.00 0.00 2.57
507 513 1.183549 AGCGGTGTCTTGGGTACTAG 58.816 55.000 0.00 0.00 0.00 2.57
508 514 1.274167 CAAGCGGTGTCTTGGGTACTA 59.726 52.381 0.00 0.00 39.68 1.82
509 515 0.034896 CAAGCGGTGTCTTGGGTACT 59.965 55.000 0.00 0.00 39.68 2.73
510 516 2.540145 CAAGCGGTGTCTTGGGTAC 58.460 57.895 0.00 0.00 39.68 3.34
515 521 2.069273 CTTAGTCCAAGCGGTGTCTTG 58.931 52.381 0.00 0.00 42.23 3.02
516 522 2.457366 CTTAGTCCAAGCGGTGTCTT 57.543 50.000 0.00 0.00 0.00 3.01
535 541 4.939509 TGTTTTTGAGATAGCTAACCGC 57.060 40.909 0.00 0.00 39.57 5.68
536 542 7.072177 TGATTGTTTTTGAGATAGCTAACCG 57.928 36.000 0.00 0.00 0.00 4.44
537 543 8.296713 TGTTGATTGTTTTTGAGATAGCTAACC 58.703 33.333 0.00 0.00 0.00 2.85
538 544 9.677567 TTGTTGATTGTTTTTGAGATAGCTAAC 57.322 29.630 0.00 0.00 0.00 2.34
539 545 9.677567 GTTGTTGATTGTTTTTGAGATAGCTAA 57.322 29.630 0.00 0.00 0.00 3.09
540 546 9.066892 AGTTGTTGATTGTTTTTGAGATAGCTA 57.933 29.630 0.00 0.00 0.00 3.32
541 547 7.945134 AGTTGTTGATTGTTTTTGAGATAGCT 58.055 30.769 0.00 0.00 0.00 3.32
542 548 7.862372 TGAGTTGTTGATTGTTTTTGAGATAGC 59.138 33.333 0.00 0.00 0.00 2.97
543 549 9.734620 TTGAGTTGTTGATTGTTTTTGAGATAG 57.265 29.630 0.00 0.00 0.00 2.08
545 551 9.434420 TTTTGAGTTGTTGATTGTTTTTGAGAT 57.566 25.926 0.00 0.00 0.00 2.75
546 552 8.824159 TTTTGAGTTGTTGATTGTTTTTGAGA 57.176 26.923 0.00 0.00 0.00 3.27
569 575 8.048514 TGTAACAAGTCTTGGGTACTAGTTTTT 58.951 33.333 16.85 0.52 34.12 1.94
570 576 7.496920 GTGTAACAAGTCTTGGGTACTAGTTTT 59.503 37.037 16.85 0.99 36.32 2.43
571 577 6.988580 GTGTAACAAGTCTTGGGTACTAGTTT 59.011 38.462 16.85 1.66 36.32 2.66
572 578 6.519382 GTGTAACAAGTCTTGGGTACTAGTT 58.481 40.000 16.85 2.32 36.32 2.24
573 579 6.094193 GTGTAACAAGTCTTGGGTACTAGT 57.906 41.667 16.85 0.00 36.32 2.57
617 626 9.976056 ATGTCACGTTACATCTAGCATCATGCA 62.976 40.741 13.38 0.00 39.87 3.96
618 627 4.051237 TCACGTTACATCTAGCATCATGC 58.949 43.478 0.00 0.00 45.46 4.06
694 703 2.937469 TGCGACCCAAGCATTTAATG 57.063 45.000 0.00 0.00 40.01 1.90
703 712 1.375396 TCCGTCAATGCGACCCAAG 60.375 57.895 0.00 0.00 42.07 3.61
726 735 1.373590 AACGATGGCGATTTTCCCGG 61.374 55.000 0.00 0.00 41.64 5.73
727 736 0.248054 CAACGATGGCGATTTTCCCG 60.248 55.000 0.00 0.00 41.64 5.14
728 737 0.525455 GCAACGATGGCGATTTTCCC 60.525 55.000 0.00 0.00 41.64 3.97
729 738 0.170116 TGCAACGATGGCGATTTTCC 59.830 50.000 0.00 0.00 41.64 3.13
730 739 1.847999 CATGCAACGATGGCGATTTTC 59.152 47.619 0.00 0.00 41.64 2.29
777 786 4.198530 CAGGGCAAACAAAACCTTTTCAT 58.801 39.130 0.00 0.00 0.00 2.57
800 809 1.672145 GCCAACGGACAAGGTAGAGTC 60.672 57.143 0.00 0.00 0.00 3.36
801 810 0.320697 GCCAACGGACAAGGTAGAGT 59.679 55.000 0.00 0.00 0.00 3.24
802 811 0.320374 TGCCAACGGACAAGGTAGAG 59.680 55.000 0.00 0.00 0.00 2.43
803 812 0.981183 ATGCCAACGGACAAGGTAGA 59.019 50.000 0.00 0.00 0.00 2.59
811 820 0.737019 CCATTGCAATGCCAACGGAC 60.737 55.000 30.15 0.00 29.91 4.79
814 823 2.446253 CGCCATTGCAATGCCAACG 61.446 57.895 30.15 24.40 37.32 4.10
822 831 2.751436 GAGGAGGCGCCATTGCAA 60.751 61.111 31.54 0.00 40.02 4.08
833 842 1.405463 TCGTTCATCATCACGAGGAGG 59.595 52.381 0.00 0.00 40.43 4.30
854 863 4.374843 TTTGCTGCATGCCATTTACTAG 57.625 40.909 16.68 3.99 42.00 2.57
879 888 2.589442 TTTGCGTCCGGTCCACAC 60.589 61.111 0.00 0.00 0.00 3.82
882 891 0.250793 ATATGTTTGCGTCCGGTCCA 59.749 50.000 0.00 0.00 0.00 4.02
896 905 5.828328 TCTTCACACCTCGATCTACATATGT 59.172 40.000 13.93 13.93 0.00 2.29
902 911 2.223618 GCCTCTTCACACCTCGATCTAC 60.224 54.545 0.00 0.00 0.00 2.59
906 915 0.904865 TGGCCTCTTCACACCTCGAT 60.905 55.000 3.32 0.00 0.00 3.59
907 916 1.533033 TGGCCTCTTCACACCTCGA 60.533 57.895 3.32 0.00 0.00 4.04
910 919 2.753029 GCTGGCCTCTTCACACCT 59.247 61.111 3.32 0.00 0.00 4.00
911 920 2.743928 CGCTGGCCTCTTCACACC 60.744 66.667 3.32 0.00 0.00 4.16
912 921 1.166531 AAACGCTGGCCTCTTCACAC 61.167 55.000 3.32 0.00 0.00 3.82
913 922 0.884704 GAAACGCTGGCCTCTTCACA 60.885 55.000 3.32 0.00 0.00 3.58
914 923 1.578206 GGAAACGCTGGCCTCTTCAC 61.578 60.000 3.32 0.00 0.00 3.18
915 924 1.302511 GGAAACGCTGGCCTCTTCA 60.303 57.895 3.32 0.00 0.00 3.02
916 925 3.579685 GGAAACGCTGGCCTCTTC 58.420 61.111 3.32 0.00 0.00 2.87
974 983 5.496133 AACATTTTGCTGCATCTAGCTAG 57.504 39.130 15.01 15.01 45.94 3.42
977 986 3.861689 GGAAACATTTTGCTGCATCTAGC 59.138 43.478 1.84 0.00 43.95 3.42
981 990 2.027837 AGGGGAAACATTTTGCTGCATC 60.028 45.455 1.84 0.00 0.00 3.91
985 994 2.629617 AGTGAGGGGAAACATTTTGCTG 59.370 45.455 0.00 0.00 0.00 4.41
987 996 3.826729 ACTAGTGAGGGGAAACATTTTGC 59.173 43.478 0.00 0.00 0.00 3.68
994 1003 5.262804 TCTAGAAGACTAGTGAGGGGAAAC 58.737 45.833 0.00 0.00 44.45 2.78
1000 1009 6.183361 TGGGATACTCTAGAAGACTAGTGAGG 60.183 46.154 0.00 0.00 44.45 3.86
1017 1026 1.291033 TGTAGCCTGGAGTGGGATACT 59.709 52.381 0.00 0.00 43.61 2.12
1018 1027 1.413077 GTGTAGCCTGGAGTGGGATAC 59.587 57.143 0.00 0.00 43.55 2.24
1022 1031 2.990479 GGTGTAGCCTGGAGTGGG 59.010 66.667 0.00 0.00 0.00 4.61
1031 1040 0.464554 GCCATTCTGGAGGTGTAGCC 60.465 60.000 0.00 0.00 40.96 3.93
1032 1041 0.253044 TGCCATTCTGGAGGTGTAGC 59.747 55.000 0.00 0.00 40.96 3.58
1034 1043 1.833630 CTCTGCCATTCTGGAGGTGTA 59.166 52.381 0.00 0.00 40.96 2.90
1069 1085 1.028330 ATGCAGACACCATGGAAGCG 61.028 55.000 21.47 6.21 0.00 4.68
1073 1089 1.221566 CGGATGCAGACACCATGGA 59.778 57.895 21.47 0.00 0.00 3.41
1081 1103 0.250513 ACCTTTCCTCGGATGCAGAC 59.749 55.000 0.00 0.00 0.00 3.51
1086 1108 3.070018 GCATATGACCTTTCCTCGGATG 58.930 50.000 6.97 0.00 0.00 3.51
1090 1112 0.861837 GCGCATATGACCTTTCCTCG 59.138 55.000 6.97 0.00 0.00 4.63
1152 1189 0.321122 CTGGCCGTTCTTGAGAAGCT 60.321 55.000 0.00 0.00 34.27 3.74
1373 1543 2.365941 AGAAGGTTTCTATAGAGCGGGC 59.634 50.000 2.02 0.00 38.49 6.13
1379 1549 6.321690 CCTTTCCTCGAGAAGGTTTCTATAGA 59.678 42.308 19.93 0.00 46.32 1.98
1396 1567 2.816672 CCTGCTTGAAGAACCTTTCCTC 59.183 50.000 0.00 0.00 0.00 3.71
1408 1579 1.155859 ATGCCAACCCCTGCTTGAA 59.844 52.632 0.00 0.00 0.00 2.69
1409 1580 1.607178 CATGCCAACCCCTGCTTGA 60.607 57.895 0.00 0.00 35.36 3.02
1410 1581 1.607178 TCATGCCAACCCCTGCTTG 60.607 57.895 0.00 0.00 34.85 4.01
1508 1679 1.043116 TCGCCGTGGATCTCCTTCAT 61.043 55.000 0.00 0.00 36.82 2.57
1509 1680 1.254975 TTCGCCGTGGATCTCCTTCA 61.255 55.000 0.00 0.00 36.82 3.02
1510 1681 0.528684 CTTCGCCGTGGATCTCCTTC 60.529 60.000 0.00 0.00 36.82 3.46
1511 1682 0.970937 TCTTCGCCGTGGATCTCCTT 60.971 55.000 0.00 0.00 36.82 3.36
1512 1683 0.970937 TTCTTCGCCGTGGATCTCCT 60.971 55.000 0.00 0.00 36.82 3.69
1513 1684 0.528684 CTTCTTCGCCGTGGATCTCC 60.529 60.000 0.00 0.00 0.00 3.71
1514 1685 1.148759 GCTTCTTCGCCGTGGATCTC 61.149 60.000 0.00 0.00 0.00 2.75
1515 1686 1.153549 GCTTCTTCGCCGTGGATCT 60.154 57.895 0.00 0.00 0.00 2.75
1516 1687 1.019278 TTGCTTCTTCGCCGTGGATC 61.019 55.000 0.00 0.00 0.00 3.36
1627 1819 3.207677 GCACCTATGAGCGGAGATG 57.792 57.895 0.00 0.00 0.00 2.90
1648 1842 2.492090 GATGACCGAGCAGCGAGT 59.508 61.111 0.21 0.00 44.57 4.18
1705 1899 0.818445 CAATAGGGCTGGCAGCAGAG 60.818 60.000 37.49 18.27 44.75 3.35
1743 1940 1.873591 GCAAGGACTTGAACACATCGT 59.126 47.619 15.76 0.00 42.93 3.73
1795 1992 2.225019 CACCACATCAAGCTTCAGTGTC 59.775 50.000 16.69 0.00 0.00 3.67
1796 1993 2.158769 TCACCACATCAAGCTTCAGTGT 60.159 45.455 16.69 10.51 0.00 3.55
1797 1994 2.497138 TCACCACATCAAGCTTCAGTG 58.503 47.619 13.00 13.00 0.00 3.66
1798 1995 2.936919 TCACCACATCAAGCTTCAGT 57.063 45.000 0.00 0.00 0.00 3.41
1799 1996 2.422479 CCATCACCACATCAAGCTTCAG 59.578 50.000 0.00 0.00 0.00 3.02
1800 1997 2.439409 CCATCACCACATCAAGCTTCA 58.561 47.619 0.00 0.00 0.00 3.02
1834 2049 3.702048 TACCTGTCAGCCGCCACC 61.702 66.667 0.00 0.00 0.00 4.61
1896 2111 3.510753 CACCATGTTGGAATCCATGTGAA 59.489 43.478 1.39 0.00 40.96 3.18
1903 2118 0.614415 TGGCCACCATGTTGGAATCC 60.614 55.000 14.42 5.46 40.96 3.01
2201 4825 4.101741 AGGCAACCATGGATAGAGAAGTAC 59.898 45.833 21.47 0.00 37.17 2.73
2206 4830 2.763039 TCAGGCAACCATGGATAGAGA 58.237 47.619 21.47 6.11 37.17 3.10
2207 4831 3.565764 TTCAGGCAACCATGGATAGAG 57.434 47.619 21.47 3.60 37.17 2.43
2208 4832 3.202818 ACATTCAGGCAACCATGGATAGA 59.797 43.478 21.47 4.40 37.17 1.98
2209 4833 3.559069 ACATTCAGGCAACCATGGATAG 58.441 45.455 21.47 8.63 37.17 2.08
2250 4879 4.862574 GCAAGGAAAAAGAAAGTCGTTGTT 59.137 37.500 0.00 0.00 38.67 2.83
2251 4880 4.157840 AGCAAGGAAAAAGAAAGTCGTTGT 59.842 37.500 0.00 0.00 38.67 3.32
2252 4881 4.672409 AGCAAGGAAAAAGAAAGTCGTTG 58.328 39.130 0.00 0.00 39.16 4.10
2256 4885 7.497925 TTCTCTAGCAAGGAAAAAGAAAGTC 57.502 36.000 0.00 0.00 0.00 3.01
2288 4917 9.361315 AGCGTAACAATTAAAACAAGACTTTTT 57.639 25.926 0.00 0.00 0.00 1.94
2319 4948 7.715788 GACATCCGTCCAACCATACATGGAT 62.716 48.000 15.18 0.00 46.78 3.41
2336 4970 4.692625 ACATTCTTTGTTCTGAGACATCCG 59.307 41.667 0.00 0.00 33.74 4.18
2343 4977 7.137490 TGATGCTAACATTCTTTGTTCTGAG 57.863 36.000 0.00 0.00 45.55 3.35
2431 5068 3.374678 ACGCGAACAAAGTTCAGGTTTTA 59.625 39.130 15.93 0.00 0.00 1.52
2432 5069 2.162809 ACGCGAACAAAGTTCAGGTTTT 59.837 40.909 15.93 0.00 0.00 2.43
2434 5071 1.063469 CACGCGAACAAAGTTCAGGTT 59.937 47.619 15.93 0.00 0.00 3.50
2435 5072 0.655733 CACGCGAACAAAGTTCAGGT 59.344 50.000 15.93 4.35 0.00 4.00
2523 5167 0.582005 GTTCTCAACGTGCACCTGAC 59.418 55.000 12.15 0.10 0.00 3.51
2525 5169 0.861837 GAGTTCTCAACGTGCACCTG 59.138 55.000 12.15 9.27 36.23 4.00
2526 5170 0.249911 GGAGTTCTCAACGTGCACCT 60.250 55.000 12.15 0.00 36.23 4.00
2550 5194 8.131100 TCAGAAAATGATTTTGTGTTCTGACTC 58.869 33.333 22.03 0.00 42.55 3.36
2559 5203 6.306356 GTCCGTCATCAGAAAATGATTTTGTG 59.694 38.462 18.43 18.43 46.97 3.33
2584 5228 2.027377 AGCAGTTCATTCTCCAGGTCAG 60.027 50.000 0.00 0.00 0.00 3.51
2588 5232 4.187694 GTTCTAGCAGTTCATTCTCCAGG 58.812 47.826 0.00 0.00 0.00 4.45
2590 5234 3.582647 TGGTTCTAGCAGTTCATTCTCCA 59.417 43.478 0.00 0.00 0.00 3.86
2602 5246 0.391130 GTGATGCGGTGGTTCTAGCA 60.391 55.000 0.00 0.00 44.13 3.49
2605 5249 1.557099 AGAGTGATGCGGTGGTTCTA 58.443 50.000 0.00 0.00 0.00 2.10
2627 5271 3.472283 AGATAAGAGCATGCAGGACTG 57.528 47.619 21.98 0.00 0.00 3.51
2628 5272 4.163839 AGAAAGATAAGAGCATGCAGGACT 59.836 41.667 21.98 10.44 0.00 3.85
2629 5273 4.450053 AGAAAGATAAGAGCATGCAGGAC 58.550 43.478 21.98 8.21 0.00 3.85
2632 5276 6.514947 AGTAGAGAAAGATAAGAGCATGCAG 58.485 40.000 21.98 0.00 0.00 4.41
2633 5277 6.323482 AGAGTAGAGAAAGATAAGAGCATGCA 59.677 38.462 21.98 0.00 0.00 3.96
2634 5278 6.642131 CAGAGTAGAGAAAGATAAGAGCATGC 59.358 42.308 10.51 10.51 0.00 4.06
2635 5279 6.642131 GCAGAGTAGAGAAAGATAAGAGCATG 59.358 42.308 0.00 0.00 0.00 4.06
2637 5281 5.654209 TGCAGAGTAGAGAAAGATAAGAGCA 59.346 40.000 0.00 0.00 0.00 4.26
2638 5282 6.142818 TGCAGAGTAGAGAAAGATAAGAGC 57.857 41.667 0.00 0.00 0.00 4.09
2639 5283 8.412456 TCAATGCAGAGTAGAGAAAGATAAGAG 58.588 37.037 0.00 0.00 0.00 2.85
2641 5285 7.167302 CGTCAATGCAGAGTAGAGAAAGATAAG 59.833 40.741 0.00 0.00 0.00 1.73
2643 5287 6.095580 ACGTCAATGCAGAGTAGAGAAAGATA 59.904 38.462 0.00 0.00 0.00 1.98
2645 5289 4.218635 ACGTCAATGCAGAGTAGAGAAAGA 59.781 41.667 0.00 0.00 0.00 2.52
2648 5292 4.521130 AACGTCAATGCAGAGTAGAGAA 57.479 40.909 0.00 0.00 0.00 2.87
2649 5293 4.438880 GCTAACGTCAATGCAGAGTAGAGA 60.439 45.833 0.00 0.00 0.00 3.10
2651 5295 3.192633 TGCTAACGTCAATGCAGAGTAGA 59.807 43.478 0.00 0.00 0.00 2.59
2652 5296 3.511699 TGCTAACGTCAATGCAGAGTAG 58.488 45.455 0.00 0.00 0.00 2.57
2653 5297 3.586100 TGCTAACGTCAATGCAGAGTA 57.414 42.857 0.00 0.00 0.00 2.59
2654 5298 2.455674 TGCTAACGTCAATGCAGAGT 57.544 45.000 0.00 0.00 0.00 3.24
2655 5299 2.159653 GGTTGCTAACGTCAATGCAGAG 60.160 50.000 0.00 0.00 36.75 3.35
2658 5302 0.515127 CGGTTGCTAACGTCAATGCA 59.485 50.000 0.00 0.00 0.00 3.96
2663 5307 0.104487 TCCAACGGTTGCTAACGTCA 59.896 50.000 12.49 0.00 43.31 4.35
2665 5309 0.390124 TCTCCAACGGTTGCTAACGT 59.610 50.000 15.31 5.13 46.48 3.99
2667 5311 2.223377 CAGTTCTCCAACGGTTGCTAAC 59.777 50.000 15.31 16.16 37.61 2.34
2669 5313 1.414919 ACAGTTCTCCAACGGTTGCTA 59.585 47.619 15.31 4.84 37.63 3.49
2688 5484 5.115622 GTCTTGTTCGCTAATTCTGCAAAAC 59.884 40.000 0.00 7.51 0.00 2.43
2702 5498 4.243270 ACTACATAGGTTGTCTTGTTCGC 58.757 43.478 0.00 0.00 39.87 4.70
2715 5511 7.956420 TCAGTTTTGTGTTGTACTACATAGG 57.044 36.000 13.21 0.97 0.00 2.57
2788 5585 2.092429 TCTTCTGTTTGGTTGGACTGCT 60.092 45.455 0.00 0.00 0.00 4.24
2794 5591 4.260784 CGAGAGTTTCTTCTGTTTGGTTGG 60.261 45.833 0.00 0.00 0.00 3.77
2808 5615 3.665190 ACCCAAATCAGTCGAGAGTTTC 58.335 45.455 0.00 0.00 0.00 2.78
2809 5616 3.771577 ACCCAAATCAGTCGAGAGTTT 57.228 42.857 0.00 0.00 0.00 2.66
2810 5617 3.771577 AACCCAAATCAGTCGAGAGTT 57.228 42.857 0.00 0.00 0.00 3.01
2813 5620 2.370519 TGGAAACCCAAATCAGTCGAGA 59.629 45.455 0.00 0.00 0.00 4.04
2877 5684 1.200020 CTGGGGAGAAAATCACAACGC 59.800 52.381 0.00 0.00 30.31 4.84
3002 5809 7.930325 GCTTTTATATTAGTTTACGGAGGGAGT 59.070 37.037 0.00 0.00 0.00 3.85
3003 5810 7.115947 CGCTTTTATATTAGTTTACGGAGGGAG 59.884 40.741 0.00 0.00 0.00 4.30
3004 5811 6.925165 CGCTTTTATATTAGTTTACGGAGGGA 59.075 38.462 0.00 0.00 0.00 4.20
3005 5812 6.703165 ACGCTTTTATATTAGTTTACGGAGGG 59.297 38.462 0.00 0.00 0.00 4.30
3041 5848 9.614792 GGAGTTGTCTGGACTGTTATATTTATT 57.385 33.333 2.38 0.00 0.00 1.40
3042 5849 8.211629 GGGAGTTGTCTGGACTGTTATATTTAT 58.788 37.037 2.38 0.00 0.00 1.40
3043 5850 7.181305 TGGGAGTTGTCTGGACTGTTATATTTA 59.819 37.037 2.38 0.00 0.00 1.40
3044 5851 6.012858 TGGGAGTTGTCTGGACTGTTATATTT 60.013 38.462 2.38 0.00 0.00 1.40
3045 5852 5.487488 TGGGAGTTGTCTGGACTGTTATATT 59.513 40.000 2.38 0.00 0.00 1.28
3048 5855 3.248024 TGGGAGTTGTCTGGACTGTTAT 58.752 45.455 2.38 0.00 0.00 1.89
3049 5856 2.684943 TGGGAGTTGTCTGGACTGTTA 58.315 47.619 2.38 0.00 0.00 2.41
3050 5857 1.507140 TGGGAGTTGTCTGGACTGTT 58.493 50.000 2.38 0.00 0.00 3.16
3051 5858 1.507140 TTGGGAGTTGTCTGGACTGT 58.493 50.000 2.38 0.00 0.00 3.55
3052 5859 2.618709 GTTTTGGGAGTTGTCTGGACTG 59.381 50.000 2.38 0.00 0.00 3.51
3053 5860 2.422945 GGTTTTGGGAGTTGTCTGGACT 60.423 50.000 2.38 0.00 0.00 3.85
3055 5862 1.850345 AGGTTTTGGGAGTTGTCTGGA 59.150 47.619 0.00 0.00 0.00 3.86
3056 5863 2.364972 AGGTTTTGGGAGTTGTCTGG 57.635 50.000 0.00 0.00 0.00 3.86
3058 5865 4.079958 ACAGTTAGGTTTTGGGAGTTGTCT 60.080 41.667 0.00 0.00 0.00 3.41
3061 5868 4.275936 CAGACAGTTAGGTTTTGGGAGTTG 59.724 45.833 0.00 0.00 0.00 3.16
3062 5869 4.165372 TCAGACAGTTAGGTTTTGGGAGTT 59.835 41.667 0.00 0.00 0.00 3.01
3064 5871 4.351874 TCAGACAGTTAGGTTTTGGGAG 57.648 45.455 0.00 0.00 0.00 4.30
3066 5873 4.651778 TCATCAGACAGTTAGGTTTTGGG 58.348 43.478 0.00 0.00 0.00 4.12
3068 5875 7.119699 TGCTAATCATCAGACAGTTAGGTTTTG 59.880 37.037 0.00 0.00 0.00 2.44
3069 5876 7.168219 TGCTAATCATCAGACAGTTAGGTTTT 58.832 34.615 0.00 0.00 0.00 2.43
3070 5877 6.711277 TGCTAATCATCAGACAGTTAGGTTT 58.289 36.000 0.00 0.00 0.00 3.27
3071 5878 6.299805 TGCTAATCATCAGACAGTTAGGTT 57.700 37.500 0.00 0.00 0.00 3.50
3073 5880 6.036517 GTGTTGCTAATCATCAGACAGTTAGG 59.963 42.308 0.00 0.00 0.00 2.69
3074 5881 6.591448 TGTGTTGCTAATCATCAGACAGTTAG 59.409 38.462 0.00 0.00 0.00 2.34
3075 5882 6.463360 TGTGTTGCTAATCATCAGACAGTTA 58.537 36.000 0.00 0.00 0.00 2.24
3076 5883 5.308014 TGTGTTGCTAATCATCAGACAGTT 58.692 37.500 0.00 0.00 0.00 3.16
3078 5885 4.201792 GCTGTGTTGCTAATCATCAGACAG 60.202 45.833 0.00 0.00 32.32 3.51
3079 5886 3.686241 GCTGTGTTGCTAATCATCAGACA 59.314 43.478 0.00 0.00 0.00 3.41
3080 5887 3.686241 TGCTGTGTTGCTAATCATCAGAC 59.314 43.478 0.00 0.00 0.00 3.51
3081 5888 3.937079 CTGCTGTGTTGCTAATCATCAGA 59.063 43.478 0.00 0.00 0.00 3.27
3082 5889 3.688185 ACTGCTGTGTTGCTAATCATCAG 59.312 43.478 0.00 0.00 0.00 2.90
3083 5890 3.678289 ACTGCTGTGTTGCTAATCATCA 58.322 40.909 0.00 0.00 0.00 3.07
3084 5891 4.409570 CAACTGCTGTGTTGCTAATCATC 58.590 43.478 0.00 0.00 40.40 2.92
3086 5893 3.902261 CAACTGCTGTGTTGCTAATCA 57.098 42.857 0.00 0.00 40.40 2.57
3094 5901 3.480470 AGTATTCTGCAACTGCTGTGTT 58.520 40.909 2.95 0.00 42.66 3.32
3095 5902 3.131709 AGTATTCTGCAACTGCTGTGT 57.868 42.857 2.95 0.00 42.66 3.72
3096 5903 5.114780 AGATAGTATTCTGCAACTGCTGTG 58.885 41.667 2.95 0.00 42.66 3.66
3097 5904 5.350504 AGATAGTATTCTGCAACTGCTGT 57.649 39.130 2.95 0.00 42.66 4.40
3101 5908 4.938080 ACGGAGATAGTATTCTGCAACTG 58.062 43.478 0.00 0.00 34.03 3.16
3104 5911 6.894339 TCATACGGAGATAGTATTCTGCAA 57.106 37.500 0.00 0.00 34.03 4.08
3105 5912 6.894339 TTCATACGGAGATAGTATTCTGCA 57.106 37.500 0.00 0.00 34.03 4.41
3106 5913 8.764524 ATTTTCATACGGAGATAGTATTCTGC 57.235 34.615 0.00 0.00 32.96 4.26
3113 5920 8.142551 GGACAAGTATTTTCATACGGAGATAGT 58.857 37.037 0.00 0.00 40.42 2.12
3114 5921 8.361139 AGGACAAGTATTTTCATACGGAGATAG 58.639 37.037 0.00 0.00 40.42 2.08
3115 5922 8.246430 AGGACAAGTATTTTCATACGGAGATA 57.754 34.615 0.00 0.00 40.42 1.98
3116 5923 7.125792 AGGACAAGTATTTTCATACGGAGAT 57.874 36.000 0.00 0.00 40.42 2.75
3117 5924 6.540438 AGGACAAGTATTTTCATACGGAGA 57.460 37.500 0.00 0.00 40.42 3.71
3118 5925 7.713750 TCTAGGACAAGTATTTTCATACGGAG 58.286 38.462 0.00 0.00 40.42 4.63
3119 5926 7.649533 TCTAGGACAAGTATTTTCATACGGA 57.350 36.000 0.00 0.00 40.42 4.69
3120 5927 8.712285 TTTCTAGGACAAGTATTTTCATACGG 57.288 34.615 0.00 0.00 40.42 4.02
3124 5931 9.927081 ATCCATTTCTAGGACAAGTATTTTCAT 57.073 29.630 0.00 0.00 38.13 2.57
3130 5937 9.838339 CACTTTATCCATTTCTAGGACAAGTAT 57.162 33.333 0.00 0.00 38.80 2.12
3131 5938 8.265055 CCACTTTATCCATTTCTAGGACAAGTA 58.735 37.037 0.00 0.00 38.80 2.24
3132 5939 7.037586 TCCACTTTATCCATTTCTAGGACAAGT 60.038 37.037 0.00 0.00 40.27 3.16
3133 5940 7.338710 TCCACTTTATCCATTTCTAGGACAAG 58.661 38.462 0.00 0.00 38.13 3.16
3134 5941 7.265599 TCCACTTTATCCATTTCTAGGACAA 57.734 36.000 0.00 0.00 38.13 3.18
3135 5942 6.884472 TCCACTTTATCCATTTCTAGGACA 57.116 37.500 0.00 0.00 38.13 4.02
3136 5943 7.283329 ACATCCACTTTATCCATTTCTAGGAC 58.717 38.462 0.00 0.00 38.13 3.85
3137 5944 7.451731 ACATCCACTTTATCCATTTCTAGGA 57.548 36.000 0.00 0.00 39.97 2.94
3138 5945 9.442047 GATACATCCACTTTATCCATTTCTAGG 57.558 37.037 0.00 0.00 0.00 3.02
3208 6015 9.627123 TGTCCTAGAAATGGATAAAATCGAAAT 57.373 29.630 0.00 0.00 35.87 2.17
3209 6016 9.456147 TTGTCCTAGAAATGGATAAAATCGAAA 57.544 29.630 0.00 0.00 35.87 3.46
3210 6017 9.109393 CTTGTCCTAGAAATGGATAAAATCGAA 57.891 33.333 0.00 0.00 34.98 3.71
3211 6018 8.265055 ACTTGTCCTAGAAATGGATAAAATCGA 58.735 33.333 0.00 0.00 34.98 3.59
3212 6019 8.438676 ACTTGTCCTAGAAATGGATAAAATCG 57.561 34.615 0.00 0.00 34.98 3.34
3217 6024 9.542462 CGAAATACTTGTCCTAGAAATGGATAA 57.458 33.333 0.00 0.00 35.87 1.75
3218 6025 8.920174 TCGAAATACTTGTCCTAGAAATGGATA 58.080 33.333 0.00 0.00 35.87 2.59
3219 6026 7.792032 TCGAAATACTTGTCCTAGAAATGGAT 58.208 34.615 0.00 0.00 35.87 3.41
3220 6027 7.177832 TCGAAATACTTGTCCTAGAAATGGA 57.822 36.000 0.00 0.00 0.00 3.41
3221 6028 8.438676 AATCGAAATACTTGTCCTAGAAATGG 57.561 34.615 0.00 0.00 0.00 3.16
3226 6033 9.760077 GGATAAAATCGAAATACTTGTCCTAGA 57.240 33.333 0.00 0.00 0.00 2.43
3227 6034 9.542462 TGGATAAAATCGAAATACTTGTCCTAG 57.458 33.333 0.00 0.00 30.86 3.02
3229 6036 8.980481 ATGGATAAAATCGAAATACTTGTCCT 57.020 30.769 0.00 0.00 30.86 3.85
3232 6039 9.301153 GCAAATGGATAAAATCGAAATACTTGT 57.699 29.630 0.00 0.00 0.00 3.16
3233 6040 9.299963 TGCAAATGGATAAAATCGAAATACTTG 57.700 29.630 0.00 0.00 0.00 3.16
3234 6041 9.520204 CTGCAAATGGATAAAATCGAAATACTT 57.480 29.630 0.00 0.00 0.00 2.24
3235 6042 8.137437 CCTGCAAATGGATAAAATCGAAATACT 58.863 33.333 0.00 0.00 0.00 2.12
3236 6043 8.134895 TCCTGCAAATGGATAAAATCGAAATAC 58.865 33.333 0.00 0.00 0.00 1.89
3237 6044 8.134895 GTCCTGCAAATGGATAAAATCGAAATA 58.865 33.333 0.00 0.00 35.87 1.40
3238 6045 6.980397 GTCCTGCAAATGGATAAAATCGAAAT 59.020 34.615 0.00 0.00 35.87 2.17
3239 6046 6.071672 TGTCCTGCAAATGGATAAAATCGAAA 60.072 34.615 0.00 0.00 35.87 3.46
3240 6047 5.417266 TGTCCTGCAAATGGATAAAATCGAA 59.583 36.000 0.00 0.00 35.87 3.71
3241 6048 4.946772 TGTCCTGCAAATGGATAAAATCGA 59.053 37.500 0.00 0.00 35.87 3.59
3242 6049 5.247507 TGTCCTGCAAATGGATAAAATCG 57.752 39.130 0.00 0.00 35.87 3.34
3243 6050 6.633856 ACTTGTCCTGCAAATGGATAAAATC 58.366 36.000 4.57 0.00 34.98 2.17
3244 6051 6.610075 ACTTGTCCTGCAAATGGATAAAAT 57.390 33.333 4.57 0.00 34.98 1.82
3245 6052 7.716799 ATACTTGTCCTGCAAATGGATAAAA 57.283 32.000 4.57 0.00 34.98 1.52
3246 6053 7.716799 AATACTTGTCCTGCAAATGGATAAA 57.283 32.000 4.57 0.00 34.98 1.40
3247 6054 7.147915 GGAAATACTTGTCCTGCAAATGGATAA 60.148 37.037 0.00 0.00 36.53 1.75
3248 6055 6.321181 GGAAATACTTGTCCTGCAAATGGATA 59.679 38.462 0.00 0.00 36.53 2.59
3249 6056 5.127682 GGAAATACTTGTCCTGCAAATGGAT 59.872 40.000 0.00 0.00 36.53 3.41
3250 6057 4.462483 GGAAATACTTGTCCTGCAAATGGA 59.538 41.667 0.00 0.00 36.53 3.41
3251 6058 4.675146 CGGAAATACTTGTCCTGCAAATGG 60.675 45.833 0.00 0.00 36.53 3.16
3252 6059 4.414852 CGGAAATACTTGTCCTGCAAATG 58.585 43.478 0.00 0.00 36.53 2.32
3253 6060 3.443681 CCGGAAATACTTGTCCTGCAAAT 59.556 43.478 0.00 0.00 36.53 2.32
3254 6061 2.817258 CCGGAAATACTTGTCCTGCAAA 59.183 45.455 0.00 0.00 36.53 3.68
3255 6062 2.039216 TCCGGAAATACTTGTCCTGCAA 59.961 45.455 0.00 0.00 35.50 4.08
3256 6063 1.626321 TCCGGAAATACTTGTCCTGCA 59.374 47.619 0.00 0.00 0.00 4.41
3257 6064 2.007608 GTCCGGAAATACTTGTCCTGC 58.992 52.381 5.23 0.00 0.00 4.85
3258 6065 2.268298 CGTCCGGAAATACTTGTCCTG 58.732 52.381 5.23 0.00 0.00 3.86
3259 6066 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3260 6067 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3261 6068 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3262 6069 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3263 6070 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3264 6071 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3265 6072 1.047034 CCCCTCCGTCCGGAAATACT 61.047 60.000 5.23 0.00 44.66 2.12
3271 6078 4.447342 GTACCCCCTCCGTCCGGA 62.447 72.222 0.00 0.00 42.90 5.14
3272 6079 4.453892 AGTACCCCCTCCGTCCGG 62.454 72.222 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.