Multiple sequence alignment - TraesCS1D01G448900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G448900 chr1D 100.000 3351 0 0 1335 4685 491042704 491046054 0.000000e+00 6189.0
1 TraesCS1D01G448900 chr1D 100.000 1013 0 0 1 1013 491041370 491042382 0.000000e+00 1871.0
2 TraesCS1D01G448900 chr1D 89.573 211 14 7 4111 4317 491041666 491041872 1.290000e-65 261.0
3 TraesCS1D01G448900 chr1D 89.573 211 14 7 297 503 491045480 491045686 1.290000e-65 261.0
4 TraesCS1D01G448900 chr1D 100.000 38 0 0 3691 3728 302256653 302256616 2.340000e-08 71.3
5 TraesCS1D01G448900 chr1B 91.374 2446 131 33 1335 3752 683473510 683475903 0.000000e+00 3275.0
6 TraesCS1D01G448900 chr1B 89.564 527 23 12 9 503 683472591 683473117 1.420000e-179 640.0
7 TraesCS1D01G448900 chr1B 90.182 275 20 5 723 990 683473153 683473427 7.460000e-93 351.0
8 TraesCS1D01G448900 chr1B 83.548 310 30 18 72 369 683476010 683476310 2.150000e-68 270.0
9 TraesCS1D01G448900 chr1B 93.605 172 7 2 4027 4194 683476147 683476318 2.160000e-63 254.0
10 TraesCS1D01G448900 chr1B 83.645 214 10 12 4491 4685 683476456 683476663 1.340000e-40 178.0
11 TraesCS1D01G448900 chr1B 80.851 235 15 16 4111 4319 683472889 683473119 1.750000e-34 158.0
12 TraesCS1D01G448900 chr1B 84.615 117 5 6 4263 4378 683476330 683476434 2.310000e-18 104.0
13 TraesCS1D01G448900 chr1A 90.389 1904 99 33 2503 4385 589041354 589043194 0.000000e+00 2425.0
14 TraesCS1D01G448900 chr1A 91.733 1137 65 10 1343 2471 589040243 589041358 0.000000e+00 1552.0
15 TraesCS1D01G448900 chr1A 91.228 399 21 7 598 990 589039764 589040154 8.930000e-147 531.0
16 TraesCS1D01G448900 chr1A 92.793 222 9 4 4423 4638 589043193 589043413 9.790000e-82 315.0
17 TraesCS1D01G448900 chr1A 80.942 446 36 23 53 474 589039301 589039721 1.640000e-79 307.0
18 TraesCS1D01G448900 chr1A 87.705 122 11 2 1685 1802 589054294 589054415 6.320000e-29 139.0
19 TraesCS1D01G448900 chr1A 97.368 38 1 0 3686 3723 47204539 47204576 1.090000e-06 65.8
20 TraesCS1D01G448900 chr1A 91.111 45 2 2 3694 3738 576371107 576371065 5.060000e-05 60.2
21 TraesCS1D01G448900 chr7B 85.714 154 10 3 13 157 604628009 604627859 8.120000e-33 152.0
22 TraesCS1D01G448900 chr6A 90.909 99 9 0 59 157 159242938 159242840 2.940000e-27 134.0
23 TraesCS1D01G448900 chr5D 100.000 49 0 0 4381 4429 438690580 438690532 1.800000e-14 91.6
24 TraesCS1D01G448900 chr5D 94.643 56 2 1 4371 4425 322388474 322388529 8.350000e-13 86.1
25 TraesCS1D01G448900 chr5D 88.235 68 6 2 4362 4429 52769266 52769201 3.890000e-11 80.5
26 TraesCS1D01G448900 chr5D 97.436 39 1 0 3691 3729 509426525 509426563 3.030000e-07 67.6
27 TraesCS1D01G448900 chr4D 96.364 55 1 1 4373 4426 66516183 66516237 6.460000e-14 89.8
28 TraesCS1D01G448900 chr4D 88.406 69 5 2 4364 4430 440018012 440018079 3.890000e-11 80.5
29 TraesCS1D01G448900 chr4D 95.556 45 1 1 3691 3734 426846092 426846048 2.340000e-08 71.3
30 TraesCS1D01G448900 chr4D 89.796 49 1 4 3691 3736 472879890 472879843 5.060000e-05 60.2
31 TraesCS1D01G448900 chr7D 91.045 67 3 3 4359 4424 226690454 226690390 2.320000e-13 87.9
32 TraesCS1D01G448900 chr5B 93.333 60 3 1 4371 4429 582975547 582975606 2.320000e-13 87.9
33 TraesCS1D01G448900 chr5B 89.796 49 3 2 3691 3738 581145060 581145013 1.410000e-05 62.1
34 TraesCS1D01G448900 chr2B 96.296 54 1 1 4374 4426 483458095 483458042 2.320000e-13 87.9
35 TraesCS1D01G448900 chr3B 100.000 46 0 0 4381 4426 443358137 443358092 8.350000e-13 86.1
36 TraesCS1D01G448900 chr5A 89.796 49 3 2 3691 3738 588845524 588845477 1.410000e-05 62.1
37 TraesCS1D01G448900 chrUn 97.222 36 0 1 3691 3726 46240401 46240435 5.060000e-05 60.2
38 TraesCS1D01G448900 chr3D 100.000 29 0 0 104 132 174821709 174821737 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G448900 chr1D 491041370 491046054 4684 False 2145.50 6189 94.7865 1 4685 4 chr1D.!!$F1 4684
1 TraesCS1D01G448900 chr1B 683472591 683476663 4072 False 653.75 3275 87.1730 9 4685 8 chr1B.!!$F1 4676
2 TraesCS1D01G448900 chr1A 589039301 589043413 4112 False 1026.00 2425 89.4170 53 4638 5 chr1A.!!$F3 4585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 735 0.109412 ATTCTTTGCAGCGAGCTTGC 60.109 50.0 18.89 18.89 45.94 4.01 F
778 940 0.251165 AAATACTTGCAGCCCGGTGT 60.251 50.0 0.00 0.00 0.00 4.16 F
1526 1714 0.515127 TACATCGGTTGCTGTTTGCG 59.485 50.0 0.00 0.00 46.63 4.85 F
2293 2499 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.0 0.00 0.00 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2285 2491 0.454285 GCACACACACACACACACAC 60.454 55.0 0.00 0.0 0.0 3.82 R
2293 2499 0.463654 TTCAGGGAGCACACACACAC 60.464 55.0 0.00 0.0 0.0 3.82 R
3324 3530 0.543174 ATACCTGCCCGATCTCTCCC 60.543 60.0 0.00 0.0 0.0 4.30 R
3960 4184 0.383949 CACAAAGTCCAAACACCGGG 59.616 55.0 6.32 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 1.323271 GGTGCTCTGAGACCGGATGA 61.323 60.000 9.46 0.00 0.00 2.92
228 229 0.532573 GTGCTCTGAGACCGGATGAA 59.467 55.000 9.46 0.00 0.00 2.57
232 241 0.465705 TCTGAGACCGGATGAATGGC 59.534 55.000 9.46 0.00 0.00 4.40
400 419 1.093159 AGTTAGTTCGACGCCGAGAT 58.907 50.000 0.00 0.00 46.39 2.75
434 473 6.634436 CGAGCTGCTTTATTTATGTGGATTTC 59.366 38.462 2.53 0.00 0.00 2.17
475 514 6.764308 TGCTTCTTCAAGATAAGGATTTGG 57.236 37.500 0.00 0.00 0.00 3.28
484 523 4.683832 AGATAAGGATTTGGTTCGTCTCG 58.316 43.478 0.00 0.00 0.00 4.04
503 542 6.237332 CGTCTCGAACAAGATATTCAACTGAC 60.237 42.308 0.00 0.00 0.00 3.51
504 543 6.809196 GTCTCGAACAAGATATTCAACTGACT 59.191 38.462 0.00 0.00 0.00 3.41
505 544 6.808704 TCTCGAACAAGATATTCAACTGACTG 59.191 38.462 0.00 0.00 0.00 3.51
506 545 6.687604 TCGAACAAGATATTCAACTGACTGA 58.312 36.000 0.00 0.00 0.00 3.41
507 546 7.323420 TCGAACAAGATATTCAACTGACTGAT 58.677 34.615 0.00 0.00 0.00 2.90
508 547 7.819415 TCGAACAAGATATTCAACTGACTGATT 59.181 33.333 0.00 0.00 0.00 2.57
509 548 8.113062 CGAACAAGATATTCAACTGACTGATTC 58.887 37.037 0.00 0.00 0.00 2.52
510 549 8.853077 AACAAGATATTCAACTGACTGATTCA 57.147 30.769 0.00 0.00 0.00 2.57
511 550 9.458727 AACAAGATATTCAACTGACTGATTCAT 57.541 29.630 0.00 0.00 32.17 2.57
512 551 8.890718 ACAAGATATTCAACTGACTGATTCATG 58.109 33.333 0.00 0.00 32.17 3.07
513 552 8.890718 CAAGATATTCAACTGACTGATTCATGT 58.109 33.333 0.00 0.00 32.17 3.21
514 553 8.434733 AGATATTCAACTGACTGATTCATGTG 57.565 34.615 0.00 0.00 32.17 3.21
515 554 8.045507 AGATATTCAACTGACTGATTCATGTGT 58.954 33.333 0.00 0.00 32.17 3.72
516 555 5.929697 TTCAACTGACTGATTCATGTGTC 57.070 39.130 0.00 0.00 32.17 3.67
517 556 4.959723 TCAACTGACTGATTCATGTGTCA 58.040 39.130 6.94 6.94 37.76 3.58
518 557 4.751600 TCAACTGACTGATTCATGTGTCAC 59.248 41.667 3.77 0.00 35.83 3.67
519 558 4.341366 ACTGACTGATTCATGTGTCACA 57.659 40.909 8.40 8.40 35.83 3.58
520 559 4.707105 ACTGACTGATTCATGTGTCACAA 58.293 39.130 10.28 0.00 35.83 3.33
521 560 4.753610 ACTGACTGATTCATGTGTCACAAG 59.246 41.667 10.28 5.73 35.83 3.16
522 561 4.707105 TGACTGATTCATGTGTCACAAGT 58.293 39.130 10.28 7.59 34.94 3.16
523 562 5.125356 TGACTGATTCATGTGTCACAAGTT 58.875 37.500 10.28 0.00 34.94 2.66
524 563 5.589855 TGACTGATTCATGTGTCACAAGTTT 59.410 36.000 10.28 0.00 34.94 2.66
538 577 5.694458 GTCACAAGTTTTTGTTTTCTGTGGT 59.306 36.000 0.00 0.00 45.01 4.16
567 729 3.272439 CAAACTGATTCTTTGCAGCGA 57.728 42.857 0.00 0.00 35.57 4.93
568 730 3.231965 CAAACTGATTCTTTGCAGCGAG 58.768 45.455 0.00 0.00 35.57 5.03
569 731 0.801251 ACTGATTCTTTGCAGCGAGC 59.199 50.000 0.00 0.00 45.96 5.03
570 732 1.085091 CTGATTCTTTGCAGCGAGCT 58.915 50.000 5.80 0.00 45.94 4.09
571 733 1.467734 CTGATTCTTTGCAGCGAGCTT 59.532 47.619 5.80 0.00 45.94 3.74
572 734 1.198408 TGATTCTTTGCAGCGAGCTTG 59.802 47.619 0.00 0.00 45.94 4.01
573 735 0.109412 ATTCTTTGCAGCGAGCTTGC 60.109 50.000 18.89 18.89 45.94 4.01
574 736 2.448153 TTCTTTGCAGCGAGCTTGCG 62.448 55.000 20.27 15.54 45.94 4.85
575 737 3.940975 CTTTGCAGCGAGCTTGCGG 62.941 63.158 20.54 20.54 45.94 5.69
580 742 2.591715 AGCGAGCTTGCGGTGTTT 60.592 55.556 20.27 0.00 40.85 2.83
581 743 2.127232 GCGAGCTTGCGGTGTTTC 60.127 61.111 10.93 0.00 0.00 2.78
582 744 2.556287 CGAGCTTGCGGTGTTTCC 59.444 61.111 0.00 0.00 0.00 3.13
583 745 1.961277 CGAGCTTGCGGTGTTTCCT 60.961 57.895 0.00 0.00 0.00 3.36
584 746 1.576421 GAGCTTGCGGTGTTTCCTG 59.424 57.895 0.00 0.00 0.00 3.86
585 747 1.152963 AGCTTGCGGTGTTTCCTGT 60.153 52.632 0.00 0.00 0.00 4.00
586 748 1.008538 GCTTGCGGTGTTTCCTGTG 60.009 57.895 0.00 0.00 0.00 3.66
587 749 1.654220 CTTGCGGTGTTTCCTGTGG 59.346 57.895 0.00 0.00 0.00 4.17
588 750 1.795170 CTTGCGGTGTTTCCTGTGGG 61.795 60.000 0.00 0.00 0.00 4.61
589 751 2.203294 GCGGTGTTTCCTGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
590 752 1.826487 GCGGTGTTTCCTGTGGGTT 60.826 57.895 0.00 0.00 0.00 4.11
591 753 1.388837 GCGGTGTTTCCTGTGGGTTT 61.389 55.000 0.00 0.00 0.00 3.27
592 754 1.970092 CGGTGTTTCCTGTGGGTTTA 58.030 50.000 0.00 0.00 0.00 2.01
593 755 1.605232 CGGTGTTTCCTGTGGGTTTAC 59.395 52.381 0.00 0.00 0.00 2.01
594 756 1.958579 GGTGTTTCCTGTGGGTTTACC 59.041 52.381 0.00 0.00 40.81 2.85
611 773 7.211966 GGTTTACCCTTCCTTTACTTTTCTC 57.788 40.000 0.00 0.00 0.00 2.87
612 774 7.002879 GGTTTACCCTTCCTTTACTTTTCTCT 58.997 38.462 0.00 0.00 0.00 3.10
613 775 7.174599 GGTTTACCCTTCCTTTACTTTTCTCTC 59.825 40.741 0.00 0.00 0.00 3.20
614 776 7.628501 TTACCCTTCCTTTACTTTTCTCTCT 57.371 36.000 0.00 0.00 0.00 3.10
615 777 6.517013 ACCCTTCCTTTACTTTTCTCTCTT 57.483 37.500 0.00 0.00 0.00 2.85
616 778 6.535540 ACCCTTCCTTTACTTTTCTCTCTTC 58.464 40.000 0.00 0.00 0.00 2.87
617 779 6.330514 ACCCTTCCTTTACTTTTCTCTCTTCT 59.669 38.462 0.00 0.00 0.00 2.85
618 780 6.652900 CCCTTCCTTTACTTTTCTCTCTTCTG 59.347 42.308 0.00 0.00 0.00 3.02
619 781 7.220740 CCTTCCTTTACTTTTCTCTCTTCTGT 58.779 38.462 0.00 0.00 0.00 3.41
620 782 7.386573 CCTTCCTTTACTTTTCTCTCTTCTGTC 59.613 40.741 0.00 0.00 0.00 3.51
621 783 7.604657 TCCTTTACTTTTCTCTCTTCTGTCT 57.395 36.000 0.00 0.00 0.00 3.41
622 784 8.024145 TCCTTTACTTTTCTCTCTTCTGTCTT 57.976 34.615 0.00 0.00 0.00 3.01
623 785 8.145122 TCCTTTACTTTTCTCTCTTCTGTCTTC 58.855 37.037 0.00 0.00 0.00 2.87
624 786 8.147704 CCTTTACTTTTCTCTCTTCTGTCTTCT 58.852 37.037 0.00 0.00 0.00 2.85
625 787 9.541143 CTTTACTTTTCTCTCTTCTGTCTTCTT 57.459 33.333 0.00 0.00 0.00 2.52
627 789 9.968870 TTACTTTTCTCTCTTCTGTCTTCTTAC 57.031 33.333 0.00 0.00 0.00 2.34
628 790 8.012957 ACTTTTCTCTCTTCTGTCTTCTTACA 57.987 34.615 0.00 0.00 0.00 2.41
629 791 8.646900 ACTTTTCTCTCTTCTGTCTTCTTACAT 58.353 33.333 0.00 0.00 0.00 2.29
630 792 9.487790 CTTTTCTCTCTTCTGTCTTCTTACATT 57.512 33.333 0.00 0.00 0.00 2.71
631 793 8.824159 TTTCTCTCTTCTGTCTTCTTACATTG 57.176 34.615 0.00 0.00 0.00 2.82
632 794 7.767250 TCTCTCTTCTGTCTTCTTACATTGA 57.233 36.000 0.00 0.00 0.00 2.57
633 795 8.359875 TCTCTCTTCTGTCTTCTTACATTGAT 57.640 34.615 0.00 0.00 0.00 2.57
634 796 8.249638 TCTCTCTTCTGTCTTCTTACATTGATG 58.750 37.037 0.00 0.00 0.00 3.07
635 797 6.815641 TCTCTTCTGTCTTCTTACATTGATGC 59.184 38.462 0.00 0.00 0.00 3.91
636 798 5.877012 TCTTCTGTCTTCTTACATTGATGCC 59.123 40.000 0.00 0.00 0.00 4.40
637 799 5.426689 TCTGTCTTCTTACATTGATGCCT 57.573 39.130 0.00 0.00 0.00 4.75
638 800 5.423015 TCTGTCTTCTTACATTGATGCCTC 58.577 41.667 0.00 0.00 0.00 4.70
639 801 4.183865 TGTCTTCTTACATTGATGCCTCG 58.816 43.478 0.00 0.00 0.00 4.63
640 802 3.557595 GTCTTCTTACATTGATGCCTCGG 59.442 47.826 0.00 0.00 0.00 4.63
641 803 1.953559 TCTTACATTGATGCCTCGGC 58.046 50.000 0.00 0.00 42.35 5.54
642 804 0.947244 CTTACATTGATGCCTCGGCC 59.053 55.000 5.33 0.00 41.09 6.13
643 805 0.465460 TTACATTGATGCCTCGGCCC 60.465 55.000 5.33 0.00 41.09 5.80
644 806 1.631071 TACATTGATGCCTCGGCCCA 61.631 55.000 5.33 0.80 41.09 5.36
645 807 2.191513 CATTGATGCCTCGGCCCAG 61.192 63.158 5.33 0.00 41.09 4.45
646 808 4.802051 TTGATGCCTCGGCCCAGC 62.802 66.667 5.33 0.00 41.09 4.85
660 822 4.592997 GGCCCAGCCTATATATTTCCTT 57.407 45.455 0.00 0.00 46.69 3.36
661 823 4.273318 GGCCCAGCCTATATATTTCCTTG 58.727 47.826 0.00 0.00 46.69 3.61
662 824 3.696548 GCCCAGCCTATATATTTCCTTGC 59.303 47.826 0.00 0.00 0.00 4.01
663 825 4.273318 CCCAGCCTATATATTTCCTTGCC 58.727 47.826 0.00 0.00 0.00 4.52
664 826 4.263905 CCCAGCCTATATATTTCCTTGCCA 60.264 45.833 0.00 0.00 0.00 4.92
665 827 4.946157 CCAGCCTATATATTTCCTTGCCAG 59.054 45.833 0.00 0.00 0.00 4.85
666 828 4.397417 CAGCCTATATATTTCCTTGCCAGC 59.603 45.833 0.00 0.00 0.00 4.85
667 829 4.043310 AGCCTATATATTTCCTTGCCAGCA 59.957 41.667 0.00 0.00 0.00 4.41
668 830 4.766891 GCCTATATATTTCCTTGCCAGCAA 59.233 41.667 4.78 4.78 0.00 3.91
669 831 5.243730 GCCTATATATTTCCTTGCCAGCAAA 59.756 40.000 6.52 0.00 35.33 3.68
670 832 6.239289 GCCTATATATTTCCTTGCCAGCAAAA 60.239 38.462 6.52 0.00 35.33 2.44
671 833 7.526025 GCCTATATATTTCCTTGCCAGCAAAAT 60.526 37.037 6.52 6.31 35.33 1.82
672 834 8.370182 CCTATATATTTCCTTGCCAGCAAAATT 58.630 33.333 6.52 0.00 35.33 1.82
676 838 8.860780 ATATTTCCTTGCCAGCAAAATTAAAA 57.139 26.923 6.52 3.80 35.33 1.52
677 839 7.764141 ATTTCCTTGCCAGCAAAATTAAAAT 57.236 28.000 6.52 5.67 35.33 1.82
678 840 8.860780 ATTTCCTTGCCAGCAAAATTAAAATA 57.139 26.923 6.52 0.00 35.33 1.40
679 841 7.665561 TTCCTTGCCAGCAAAATTAAAATAC 57.334 32.000 6.52 0.00 35.33 1.89
680 842 6.763355 TCCTTGCCAGCAAAATTAAAATACA 58.237 32.000 6.52 0.00 35.33 2.29
681 843 7.220030 TCCTTGCCAGCAAAATTAAAATACAA 58.780 30.769 6.52 0.00 35.33 2.41
682 844 7.882271 TCCTTGCCAGCAAAATTAAAATACAAT 59.118 29.630 6.52 0.00 35.33 2.71
683 845 7.964011 CCTTGCCAGCAAAATTAAAATACAATG 59.036 33.333 6.52 0.00 35.33 2.82
684 846 6.840075 TGCCAGCAAAATTAAAATACAATGC 58.160 32.000 0.00 0.00 0.00 3.56
685 847 6.429078 TGCCAGCAAAATTAAAATACAATGCA 59.571 30.769 0.00 0.00 35.11 3.96
686 848 6.742264 GCCAGCAAAATTAAAATACAATGCAC 59.258 34.615 0.00 0.00 35.11 4.57
687 849 7.361116 GCCAGCAAAATTAAAATACAATGCACT 60.361 33.333 0.00 0.00 35.11 4.40
688 850 8.170553 CCAGCAAAATTAAAATACAATGCACTC 58.829 33.333 0.00 0.00 35.11 3.51
689 851 8.710551 CAGCAAAATTAAAATACAATGCACTCA 58.289 29.630 0.00 0.00 35.11 3.41
690 852 9.439500 AGCAAAATTAAAATACAATGCACTCAT 57.561 25.926 0.00 0.00 35.11 2.90
691 853 9.480538 GCAAAATTAAAATACAATGCACTCATG 57.519 29.630 0.00 0.00 32.23 3.07
724 886 8.905103 TTTCAGTACAAAAACTAAGAAACTGC 57.095 30.769 0.00 0.00 34.51 4.40
725 887 7.618502 TCAGTACAAAAACTAAGAAACTGCA 57.381 32.000 0.00 0.00 34.51 4.41
726 888 7.693952 TCAGTACAAAAACTAAGAAACTGCAG 58.306 34.615 13.48 13.48 34.51 4.41
749 911 2.696759 CCCGGGGCACAATTTCGTC 61.697 63.158 14.71 0.00 0.00 4.20
764 926 9.061610 CACAATTTCGTCCATTCAGTTAAATAC 57.938 33.333 0.00 0.00 0.00 1.89
765 927 9.010029 ACAATTTCGTCCATTCAGTTAAATACT 57.990 29.630 0.00 0.00 37.68 2.12
778 940 0.251165 AAATACTTGCAGCCCGGTGT 60.251 50.000 0.00 0.00 0.00 4.16
796 961 5.330295 CGGTGTAAGTGTCAGTGTCTATAC 58.670 45.833 0.00 0.00 0.00 1.47
811 976 6.598457 AGTGTCTATACGAGTGTGAATGTAGT 59.402 38.462 0.00 0.00 0.00 2.73
812 977 7.767659 AGTGTCTATACGAGTGTGAATGTAGTA 59.232 37.037 0.00 0.00 0.00 1.82
813 978 8.063038 GTGTCTATACGAGTGTGAATGTAGTAG 58.937 40.741 0.00 0.00 0.00 2.57
814 979 7.226128 TGTCTATACGAGTGTGAATGTAGTAGG 59.774 40.741 0.00 0.00 0.00 3.18
815 980 7.226325 GTCTATACGAGTGTGAATGTAGTAGGT 59.774 40.741 0.00 0.00 0.00 3.08
947 1116 4.093291 CGGCTGCTGCTCCTCCTT 62.093 66.667 15.64 0.00 39.59 3.36
954 1123 1.931007 GCTGCTCCTCCTTCCCCATT 61.931 60.000 0.00 0.00 0.00 3.16
961 1130 1.855599 CCTCCTTCCCCATTCTCCAAT 59.144 52.381 0.00 0.00 0.00 3.16
990 1159 4.711949 AGGGCTTCTGGTGCAGCG 62.712 66.667 11.91 6.42 36.85 5.18
1435 1617 2.404265 TTTTGCTGTGCAGACATTCG 57.596 45.000 3.02 0.00 40.61 3.34
1436 1618 1.592064 TTTGCTGTGCAGACATTCGA 58.408 45.000 3.02 0.00 40.61 3.71
1510 1692 5.534207 TTCACTCTACTTTTCCCGTTACA 57.466 39.130 0.00 0.00 0.00 2.41
1513 1695 4.561606 CACTCTACTTTTCCCGTTACATCG 59.438 45.833 0.00 0.00 0.00 3.84
1526 1714 0.515127 TACATCGGTTGCTGTTTGCG 59.485 50.000 0.00 0.00 46.63 4.85
1592 1783 1.414181 ACATCGGAGACATAGGGCAAG 59.586 52.381 0.00 0.00 42.51 4.01
1620 1811 1.072331 CTCCCTGTAATCCCATTCCCG 59.928 57.143 0.00 0.00 0.00 5.14
1623 1814 2.224450 CCCTGTAATCCCATTCCCGTAC 60.224 54.545 0.00 0.00 0.00 3.67
1625 1816 2.436542 CTGTAATCCCATTCCCGTACCA 59.563 50.000 0.00 0.00 0.00 3.25
1632 1823 1.003812 CCATTCCCGTACCACCTTTCA 59.996 52.381 0.00 0.00 0.00 2.69
1635 1826 1.426751 TCCCGTACCACCTTTCACTT 58.573 50.000 0.00 0.00 0.00 3.16
1814 2009 7.872483 CAGGTTTATTTGTTGGTTCATTAAGCT 59.128 33.333 0.00 0.00 34.13 3.74
1846 2041 2.398252 ATCATCTGCACACCTGTCAG 57.602 50.000 0.00 0.00 0.00 3.51
1852 2047 2.169561 TCTGCACACCTGTCAGTTAACA 59.830 45.455 8.61 0.00 0.00 2.41
1856 2051 2.226437 CACACCTGTCAGTTAACATGCC 59.774 50.000 8.61 0.00 0.00 4.40
1859 2054 2.371841 ACCTGTCAGTTAACATGCCTCA 59.628 45.455 8.61 3.79 0.00 3.86
1861 2056 3.557898 CCTGTCAGTTAACATGCCTCACT 60.558 47.826 8.61 0.00 0.00 3.41
1870 2066 6.942576 AGTTAACATGCCTCACTATTTTCTGT 59.057 34.615 8.61 0.00 0.00 3.41
1917 2113 4.277476 AGTTGATTGTTGAGTTGGGAACA 58.723 39.130 0.00 0.00 39.83 3.18
1975 2171 6.681777 ACAATTATTCTCCAGTTGCAGTTTC 58.318 36.000 0.00 0.00 0.00 2.78
1983 2179 3.118261 TCCAGTTGCAGTTTCTTCTCAGT 60.118 43.478 0.00 0.00 0.00 3.41
2033 2229 6.656902 AGATGGTGAGATGCTTCTTTTATGA 58.343 36.000 3.29 0.00 30.30 2.15
2063 2262 7.215789 TGCTATTTCCATGAAAGCTTGAAAAA 58.784 30.769 11.54 3.53 34.92 1.94
2191 2397 2.442236 ACTTGGGAATGGCGATGAAT 57.558 45.000 0.00 0.00 0.00 2.57
2277 2483 5.389859 TGGAACAAATTGAGCATTAGGTG 57.610 39.130 0.00 0.00 31.92 4.00
2278 2484 4.832266 TGGAACAAATTGAGCATTAGGTGT 59.168 37.500 0.00 0.00 31.92 4.16
2279 2485 5.163513 GGAACAAATTGAGCATTAGGTGTG 58.836 41.667 0.00 0.00 0.00 3.82
2280 2486 5.278957 GGAACAAATTGAGCATTAGGTGTGT 60.279 40.000 0.00 0.00 0.00 3.72
2281 2487 5.125100 ACAAATTGAGCATTAGGTGTGTG 57.875 39.130 0.00 0.00 0.00 3.82
2282 2488 4.584325 ACAAATTGAGCATTAGGTGTGTGT 59.416 37.500 0.00 0.00 0.00 3.72
2283 2489 4.771590 AATTGAGCATTAGGTGTGTGTG 57.228 40.909 0.00 0.00 0.00 3.82
2284 2490 2.928801 TGAGCATTAGGTGTGTGTGT 57.071 45.000 0.00 0.00 0.00 3.72
2285 2491 2.493035 TGAGCATTAGGTGTGTGTGTG 58.507 47.619 0.00 0.00 0.00 3.82
2286 2492 2.158827 TGAGCATTAGGTGTGTGTGTGT 60.159 45.455 0.00 0.00 0.00 3.72
2293 2499 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
2357 2563 6.801862 GTCACCAGTTAAAATGCAGTTGATAC 59.198 38.462 0.00 0.00 0.00 2.24
2365 2571 1.803334 TGCAGTTGATACGAACACCC 58.197 50.000 0.00 0.00 0.00 4.61
2370 2576 2.147958 GTTGATACGAACACCCTGCAA 58.852 47.619 0.00 0.00 0.00 4.08
2374 2580 1.045407 TACGAACACCCTGCAAGAGT 58.955 50.000 0.00 0.00 34.07 3.24
2475 2681 3.173953 TCCCAAGCAAAGATGACCAAT 57.826 42.857 0.00 0.00 0.00 3.16
2485 2691 3.057969 AGATGACCAATTGACGCTTCA 57.942 42.857 7.12 1.91 0.00 3.02
2516 2722 6.558009 CATGTCGTTGGATGATCTGAAAAAT 58.442 36.000 0.00 0.00 0.00 1.82
2523 2729 6.581388 TGGATGATCTGAAAAATAGGGTCT 57.419 37.500 0.00 0.00 0.00 3.85
2571 2777 1.985159 ACATGGTGGCTTCTAAGGACA 59.015 47.619 0.00 0.00 0.00 4.02
2576 2782 2.504175 GGTGGCTTCTAAGGACATACCA 59.496 50.000 0.00 0.00 42.04 3.25
2577 2783 3.532542 GTGGCTTCTAAGGACATACCAC 58.467 50.000 0.00 0.00 42.04 4.16
2591 2797 4.679412 CCACTGCAAATTGGTGGC 57.321 55.556 8.93 0.00 42.91 5.01
2723 2929 0.329596 GCTCCCCACAGGTTCAGAAT 59.670 55.000 0.00 0.00 36.75 2.40
2726 2932 0.698238 CCCCACAGGTTCAGAATCCA 59.302 55.000 0.00 0.00 0.00 3.41
2758 2964 0.517316 GAAACGATCGCCTTGTTGCT 59.483 50.000 16.60 0.00 31.49 3.91
2769 2975 4.037446 TCGCCTTGTTGCTTAAATTCTGTT 59.963 37.500 0.00 0.00 0.00 3.16
2822 3028 1.264288 CACCGACTTCTCAAGTTTGCC 59.736 52.381 0.00 0.00 43.03 4.52
3009 3215 1.612463 GGGAAGCAAGCCATGATCATC 59.388 52.381 4.86 0.00 0.00 2.92
3024 3230 0.871722 TCATCGGCAACAAGAAACCG 59.128 50.000 0.00 0.00 46.97 4.44
3101 3307 4.079850 CAGGCAGAGCGCAGGAGT 62.080 66.667 11.47 0.00 45.17 3.85
3208 3414 2.310233 CCTTGTGGTGCGACGTCTG 61.310 63.158 14.70 8.46 0.00 3.51
3210 3416 1.151777 CTTGTGGTGCGACGTCTGTT 61.152 55.000 14.70 0.00 0.00 3.16
3309 3515 5.419542 CACCTGAATTCGATGGAGAACTTA 58.580 41.667 15.78 0.00 32.39 2.24
3316 3522 3.964411 TCGATGGAGAACTTAGGACAGA 58.036 45.455 0.00 0.00 0.00 3.41
3317 3523 3.695060 TCGATGGAGAACTTAGGACAGAC 59.305 47.826 0.00 0.00 0.00 3.51
3318 3524 3.697045 CGATGGAGAACTTAGGACAGACT 59.303 47.826 0.00 0.00 0.00 3.24
3319 3525 4.439426 CGATGGAGAACTTAGGACAGACTG 60.439 50.000 0.00 0.00 0.00 3.51
3320 3526 2.563179 TGGAGAACTTAGGACAGACTGC 59.437 50.000 1.25 0.00 0.00 4.40
3322 3528 3.006967 GGAGAACTTAGGACAGACTGCAA 59.993 47.826 1.25 0.00 0.00 4.08
3324 3530 3.007398 AGAACTTAGGACAGACTGCAAGG 59.993 47.826 1.25 0.00 39.30 3.61
3325 3531 1.625818 ACTTAGGACAGACTGCAAGGG 59.374 52.381 1.25 0.00 39.30 3.95
3326 3532 0.984230 TTAGGACAGACTGCAAGGGG 59.016 55.000 1.25 0.00 39.30 4.79
3327 3533 0.116342 TAGGACAGACTGCAAGGGGA 59.884 55.000 1.25 0.00 39.30 4.81
3328 3534 1.197430 AGGACAGACTGCAAGGGGAG 61.197 60.000 1.25 0.00 39.30 4.30
3329 3535 1.194781 GGACAGACTGCAAGGGGAGA 61.195 60.000 1.25 0.00 39.30 3.71
3330 3536 0.248843 GACAGACTGCAAGGGGAGAG 59.751 60.000 1.25 0.00 39.30 3.20
3331 3537 0.178921 ACAGACTGCAAGGGGAGAGA 60.179 55.000 1.25 0.00 39.30 3.10
3332 3538 1.202330 CAGACTGCAAGGGGAGAGAT 58.798 55.000 0.00 0.00 39.30 2.75
3333 3539 1.138661 CAGACTGCAAGGGGAGAGATC 59.861 57.143 0.00 0.00 39.30 2.75
3334 3540 0.103937 GACTGCAAGGGGAGAGATCG 59.896 60.000 0.00 0.00 39.30 3.69
3335 3541 1.333636 ACTGCAAGGGGAGAGATCGG 61.334 60.000 0.00 0.00 39.30 4.18
3336 3542 2.037620 CTGCAAGGGGAGAGATCGGG 62.038 65.000 0.00 0.00 33.71 5.14
3337 3543 2.825264 CAAGGGGAGAGATCGGGC 59.175 66.667 0.00 0.00 0.00 6.13
3338 3544 2.066393 CAAGGGGAGAGATCGGGCA 61.066 63.158 0.00 0.00 0.00 5.36
3339 3545 1.764054 AAGGGGAGAGATCGGGCAG 60.764 63.158 0.00 0.00 0.00 4.85
3340 3546 3.237741 GGGGAGAGATCGGGCAGG 61.238 72.222 0.00 0.00 0.00 4.85
3341 3547 2.444895 GGGAGAGATCGGGCAGGT 60.445 66.667 0.00 0.00 0.00 4.00
3342 3548 1.152525 GGGAGAGATCGGGCAGGTA 60.153 63.158 0.00 0.00 0.00 3.08
3343 3549 0.543174 GGGAGAGATCGGGCAGGTAT 60.543 60.000 0.00 0.00 0.00 2.73
3344 3550 0.605589 GGAGAGATCGGGCAGGTATG 59.394 60.000 0.00 0.00 0.00 2.39
3353 3559 2.093341 TCGGGCAGGTATGAACTAAACC 60.093 50.000 0.00 0.00 0.00 3.27
3355 3561 2.355412 GGGCAGGTATGAACTAAACCGT 60.355 50.000 0.00 0.00 38.37 4.83
3411 3621 1.736681 GCTTGTAGCTTCTCCTTGCTG 59.263 52.381 0.00 0.00 40.08 4.41
3455 3665 1.198637 GTCATGAACTTGTGGAGCAGC 59.801 52.381 0.00 0.00 0.00 5.25
3597 3813 7.330946 TCGTTTATTGAGAGTTTACCAGTGATG 59.669 37.037 0.00 0.00 0.00 3.07
3660 3877 0.969149 TAGTGATCATAGCCTGCGGG 59.031 55.000 7.41 7.41 0.00 6.13
3686 3903 5.788450 TGTGTTTTTCAACAACAGGTGAAT 58.212 33.333 0.00 0.00 44.72 2.57
3691 3908 8.307483 TGTTTTTCAACAACAGGTGAATAAGAA 58.693 29.630 0.00 0.00 40.10 2.52
3692 3909 8.592155 GTTTTTCAACAACAGGTGAATAAGAAC 58.408 33.333 0.00 0.00 32.54 3.01
3693 3910 5.666969 TCAACAACAGGTGAATAAGAACG 57.333 39.130 0.00 0.00 0.00 3.95
3695 3912 3.740115 ACAACAGGTGAATAAGAACGCT 58.260 40.909 0.00 0.00 0.00 5.07
3696 3913 3.746492 ACAACAGGTGAATAAGAACGCTC 59.254 43.478 0.00 0.00 0.00 5.03
3697 3914 3.963428 ACAGGTGAATAAGAACGCTCT 57.037 42.857 0.00 0.00 0.00 4.09
3699 3916 5.401531 ACAGGTGAATAAGAACGCTCTTA 57.598 39.130 10.52 10.52 45.93 2.10
3712 3929 7.695869 AGAACGCTCTTATATTTCTTTACGG 57.304 36.000 0.00 0.00 0.00 4.02
3714 3931 7.648510 AGAACGCTCTTATATTTCTTTACGGAG 59.351 37.037 0.00 0.00 0.00 4.63
3715 3932 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3716 3933 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3717 3934 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3718 3935 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3779 4000 3.332919 TGCAGTGCAATTTGTTTGTGTT 58.667 36.364 17.26 0.00 37.65 3.32
3780 4001 3.124806 TGCAGTGCAATTTGTTTGTGTTG 59.875 39.130 17.26 0.00 37.65 3.33
3782 4003 4.492895 GCAGTGCAATTTGTTTGTGTTGAG 60.493 41.667 11.09 0.00 37.65 3.02
3784 4005 4.081752 AGTGCAATTTGTTTGTGTTGAGGA 60.082 37.500 0.00 0.00 37.65 3.71
3844 4065 2.349590 TCATGTCAGAAGTTGCGATGG 58.650 47.619 0.00 0.00 0.00 3.51
3847 4068 1.278985 TGTCAGAAGTTGCGATGGGAT 59.721 47.619 0.00 0.00 0.00 3.85
3863 4087 5.221441 CGATGGGATGAGTGTGGAGTAAATA 60.221 44.000 0.00 0.00 0.00 1.40
3939 4163 2.388232 CGCGTCCCTTTGGCTGTAC 61.388 63.158 0.00 0.00 0.00 2.90
3960 4184 0.458669 CCATGCTTTGGGATGTCTGC 59.541 55.000 0.00 0.00 42.33 4.26
3985 4209 2.099098 GTGTTTGGACTTTGTGGTCAGG 59.901 50.000 0.00 0.00 37.91 3.86
4038 4274 1.280457 AAGACGGGGAGCTCTGAAAT 58.720 50.000 14.64 0.00 0.00 2.17
4100 4339 2.645838 AGTTGTCACTGCCTGATTGT 57.354 45.000 0.00 0.00 0.00 2.71
4147 4386 4.704057 AGAATGGCTTGATTGGACTCTTTC 59.296 41.667 0.00 0.00 0.00 2.62
4154 4393 5.179555 GCTTGATTGGACTCTTTCGTTAGTT 59.820 40.000 0.00 0.00 0.00 2.24
4207 4447 8.520835 TTATGCTCTTATAAGTTAGTGCGATG 57.479 34.615 12.19 0.00 34.52 3.84
4208 4448 4.745125 TGCTCTTATAAGTTAGTGCGATGC 59.255 41.667 12.19 4.04 34.52 3.91
4209 4449 4.150804 GCTCTTATAAGTTAGTGCGATGCC 59.849 45.833 12.19 0.00 0.00 4.40
4210 4450 4.295870 TCTTATAAGTTAGTGCGATGCCG 58.704 43.478 12.19 0.00 39.16 5.69
4277 4517 4.214119 TGTGTTGCTCTATGCTTCTTCAAC 59.786 41.667 0.00 0.00 43.37 3.18
4279 4519 4.453478 TGTTGCTCTATGCTTCTTCAACAG 59.547 41.667 0.00 0.00 43.37 3.16
4319 4560 8.439286 GTCTCAAACAAGATAGTCAACTGATTC 58.561 37.037 0.00 0.00 0.00 2.52
4327 4568 9.932699 CAAGATAGTCAACTGATTCATTGATTC 57.067 33.333 11.87 2.31 37.19 2.52
4329 4570 9.848710 AGATAGTCAACTGATTCATTGATTCAT 57.151 29.630 10.72 0.33 37.19 2.57
4342 4583 9.884636 ATTCATTGATTCATTCATTCATGTGTT 57.115 25.926 0.00 0.00 33.34 3.32
4383 4624 5.246203 TGTCTCTGGATGCAAACTACTAAGT 59.754 40.000 0.00 0.00 37.65 2.24
4385 4626 6.752815 GTCTCTGGATGCAAACTACTAAGTAC 59.247 42.308 0.00 0.00 33.75 2.73
4386 4627 6.663953 TCTCTGGATGCAAACTACTAAGTACT 59.336 38.462 0.00 0.00 33.75 2.73
4387 4628 6.864342 TCTGGATGCAAACTACTAAGTACTC 58.136 40.000 0.00 0.00 33.75 2.59
4388 4629 5.974108 TGGATGCAAACTACTAAGTACTCC 58.026 41.667 0.00 0.00 33.75 3.85
4389 4630 5.105064 TGGATGCAAACTACTAAGTACTCCC 60.105 44.000 0.00 0.00 33.75 4.30
4390 4631 5.128991 GGATGCAAACTACTAAGTACTCCCT 59.871 44.000 0.00 0.00 33.75 4.20
4391 4632 5.656213 TGCAAACTACTAAGTACTCCCTC 57.344 43.478 0.00 0.00 33.75 4.30
4392 4633 4.465305 TGCAAACTACTAAGTACTCCCTCC 59.535 45.833 0.00 0.00 33.75 4.30
4393 4634 4.439837 GCAAACTACTAAGTACTCCCTCCG 60.440 50.000 0.00 0.00 33.75 4.63
4394 4635 4.582973 AACTACTAAGTACTCCCTCCGT 57.417 45.455 0.00 0.00 33.75 4.69
4395 4636 4.149511 ACTACTAAGTACTCCCTCCGTC 57.850 50.000 0.00 0.00 32.84 4.79
4396 4637 2.433662 ACTAAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
4397 4638 1.064091 ACTAAGTACTCCCTCCGTCCC 60.064 57.143 0.00 0.00 0.00 4.46
4398 4639 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
4399 4640 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4400 4641 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4401 4642 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4402 4643 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4403 4644 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4404 4645 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4405 4646 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4406 4647 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4407 4648 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4408 4649 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4409 4650 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4410 4651 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4411 4652 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4412 4653 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4413 4654 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4414 4655 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4415 4656 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4416 4657 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4417 4658 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4418 4659 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4419 4660 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4420 4661 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4421 4662 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4485 4727 8.002984 TCATATGATTCAGCATCACACATTTT 57.997 30.769 0.00 0.00 45.12 1.82
4612 4873 7.541122 AACTTTCAGTACACAAAAGAGAGAC 57.459 36.000 16.71 0.00 34.76 3.36
4630 4891 7.175104 AGAGAGACAGAGAGAGTTACTGAAAT 58.825 38.462 0.00 0.00 35.85 2.17
4632 4893 9.120538 GAGAGACAGAGAGAGTTACTGAAATAT 57.879 37.037 0.00 0.00 35.85 1.28
4661 4926 4.469657 TCATTCAGTTAAAACCCTGCAGT 58.530 39.130 13.81 0.00 0.00 4.40
4662 4927 4.518970 TCATTCAGTTAAAACCCTGCAGTC 59.481 41.667 13.81 0.00 0.00 3.51
4663 4928 2.858745 TCAGTTAAAACCCTGCAGTCC 58.141 47.619 13.81 0.00 0.00 3.85
4664 4929 1.535462 CAGTTAAAACCCTGCAGTCCG 59.465 52.381 13.81 1.87 0.00 4.79
4665 4930 0.879090 GTTAAAACCCTGCAGTCCGG 59.121 55.000 13.81 9.52 0.00 5.14
4666 4931 0.475044 TTAAAACCCTGCAGTCCGGT 59.525 50.000 13.81 10.23 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
227 228 0.610232 GGTGGTGAGCTTCAGCCATT 60.610 55.000 11.21 0.00 43.72 3.16
228 229 1.001641 GGTGGTGAGCTTCAGCCAT 60.002 57.895 11.21 0.00 43.72 4.40
232 241 2.082231 CAATCTGGTGGTGAGCTTCAG 58.918 52.381 0.00 0.00 0.00 3.02
322 333 8.283291 CACAATCAACTAACTAAAGAGTCCAAC 58.717 37.037 0.00 0.00 33.58 3.77
400 419 2.189191 AAAGCAGCTCGAGATGGGCA 62.189 55.000 30.05 0.00 31.02 5.36
434 473 2.860062 GCATAGAGCAACACAAGCAAG 58.140 47.619 0.00 0.00 44.79 4.01
484 523 8.939929 TGAATCAGTCAGTTGAATATCTTGTTC 58.060 33.333 0.00 0.00 0.00 3.18
488 527 8.890718 CACATGAATCAGTCAGTTGAATATCTT 58.109 33.333 0.00 0.00 40.43 2.40
503 542 6.753279 ACAAAAACTTGTGACACATGAATCAG 59.247 34.615 23.91 13.36 33.23 2.90
504 543 6.629128 ACAAAAACTTGTGACACATGAATCA 58.371 32.000 23.91 0.00 33.23 2.57
505 544 7.524294 AACAAAAACTTGTGACACATGAATC 57.476 32.000 23.91 0.00 34.99 2.52
506 545 7.903995 AAACAAAAACTTGTGACACATGAAT 57.096 28.000 23.91 11.88 34.99 2.57
507 546 7.655328 AGAAAACAAAAACTTGTGACACATGAA 59.345 29.630 23.91 3.59 34.99 2.57
508 547 7.116090 CAGAAAACAAAAACTTGTGACACATGA 59.884 33.333 23.91 4.29 34.99 3.07
509 548 7.095691 ACAGAAAACAAAAACTTGTGACACATG 60.096 33.333 17.43 17.43 34.99 3.21
510 549 6.928492 ACAGAAAACAAAAACTTGTGACACAT 59.072 30.769 9.55 0.00 34.99 3.21
511 550 6.199908 CACAGAAAACAAAAACTTGTGACACA 59.800 34.615 3.56 3.56 34.99 3.72
512 551 6.346518 CCACAGAAAACAAAAACTTGTGACAC 60.347 38.462 0.00 0.00 34.99 3.67
513 552 5.694006 CCACAGAAAACAAAAACTTGTGACA 59.306 36.000 3.51 0.00 34.99 3.58
514 553 5.694458 ACCACAGAAAACAAAAACTTGTGAC 59.306 36.000 3.51 0.00 34.99 3.67
515 554 5.848406 ACCACAGAAAACAAAAACTTGTGA 58.152 33.333 3.51 0.00 34.99 3.58
516 555 6.018343 ACAACCACAGAAAACAAAAACTTGTG 60.018 34.615 0.00 0.00 34.99 3.33
517 556 6.018343 CACAACCACAGAAAACAAAAACTTGT 60.018 34.615 0.00 0.00 36.59 3.16
518 557 6.361899 CACAACCACAGAAAACAAAAACTTG 58.638 36.000 0.00 0.00 0.00 3.16
519 558 5.468409 CCACAACCACAGAAAACAAAAACTT 59.532 36.000 0.00 0.00 0.00 2.66
520 559 4.994217 CCACAACCACAGAAAACAAAAACT 59.006 37.500 0.00 0.00 0.00 2.66
521 560 4.991687 TCCACAACCACAGAAAACAAAAAC 59.008 37.500 0.00 0.00 0.00 2.43
522 561 5.215252 TCCACAACCACAGAAAACAAAAA 57.785 34.783 0.00 0.00 0.00 1.94
523 562 4.873746 TCCACAACCACAGAAAACAAAA 57.126 36.364 0.00 0.00 0.00 2.44
524 563 4.753233 CATCCACAACCACAGAAAACAAA 58.247 39.130 0.00 0.00 0.00 2.83
538 577 5.291178 CAAAGAATCAGTTTGCATCCACAA 58.709 37.500 0.00 0.00 0.00 3.33
565 727 1.961277 AGGAAACACCGCAAGCTCG 60.961 57.895 0.00 0.00 44.74 5.03
566 728 1.166531 ACAGGAAACACCGCAAGCTC 61.167 55.000 0.00 0.00 44.74 4.09
567 729 1.152963 ACAGGAAACACCGCAAGCT 60.153 52.632 0.00 0.00 44.74 3.74
568 730 1.008538 CACAGGAAACACCGCAAGC 60.009 57.895 0.00 0.00 44.74 4.01
569 731 1.654220 CCACAGGAAACACCGCAAG 59.346 57.895 0.00 0.00 44.74 4.01
570 732 1.826054 CCCACAGGAAACACCGCAA 60.826 57.895 0.00 0.00 44.74 4.85
571 733 2.203280 CCCACAGGAAACACCGCA 60.203 61.111 0.00 0.00 44.74 5.69
572 734 1.388837 AAACCCACAGGAAACACCGC 61.389 55.000 0.00 0.00 44.74 5.68
573 735 1.605232 GTAAACCCACAGGAAACACCG 59.395 52.381 0.00 0.00 44.74 4.94
574 736 1.958579 GGTAAACCCACAGGAAACACC 59.041 52.381 0.00 0.00 36.73 4.16
587 749 7.002879 AGAGAAAAGTAAAGGAAGGGTAAACC 58.997 38.462 0.00 0.00 40.67 3.27
588 750 7.937942 AGAGAGAAAAGTAAAGGAAGGGTAAAC 59.062 37.037 0.00 0.00 0.00 2.01
589 751 8.042286 AGAGAGAAAAGTAAAGGAAGGGTAAA 57.958 34.615 0.00 0.00 0.00 2.01
590 752 7.628501 AGAGAGAAAAGTAAAGGAAGGGTAA 57.371 36.000 0.00 0.00 0.00 2.85
591 753 7.513091 AGAAGAGAGAAAAGTAAAGGAAGGGTA 59.487 37.037 0.00 0.00 0.00 3.69
592 754 6.330514 AGAAGAGAGAAAAGTAAAGGAAGGGT 59.669 38.462 0.00 0.00 0.00 4.34
593 755 6.652900 CAGAAGAGAGAAAAGTAAAGGAAGGG 59.347 42.308 0.00 0.00 0.00 3.95
594 756 7.220740 ACAGAAGAGAGAAAAGTAAAGGAAGG 58.779 38.462 0.00 0.00 0.00 3.46
595 757 8.147704 AGACAGAAGAGAGAAAAGTAAAGGAAG 58.852 37.037 0.00 0.00 0.00 3.46
596 758 8.024145 AGACAGAAGAGAGAAAAGTAAAGGAA 57.976 34.615 0.00 0.00 0.00 3.36
597 759 7.604657 AGACAGAAGAGAGAAAAGTAAAGGA 57.395 36.000 0.00 0.00 0.00 3.36
598 760 8.147704 AGAAGACAGAAGAGAGAAAAGTAAAGG 58.852 37.037 0.00 0.00 0.00 3.11
599 761 9.541143 AAGAAGACAGAAGAGAGAAAAGTAAAG 57.459 33.333 0.00 0.00 0.00 1.85
601 763 9.968870 GTAAGAAGACAGAAGAGAGAAAAGTAA 57.031 33.333 0.00 0.00 0.00 2.24
602 764 9.132923 TGTAAGAAGACAGAAGAGAGAAAAGTA 57.867 33.333 0.00 0.00 0.00 2.24
603 765 8.012957 TGTAAGAAGACAGAAGAGAGAAAAGT 57.987 34.615 0.00 0.00 0.00 2.66
604 766 9.487790 AATGTAAGAAGACAGAAGAGAGAAAAG 57.512 33.333 0.00 0.00 31.51 2.27
605 767 9.265901 CAATGTAAGAAGACAGAAGAGAGAAAA 57.734 33.333 0.00 0.00 31.51 2.29
606 768 8.642432 TCAATGTAAGAAGACAGAAGAGAGAAA 58.358 33.333 0.00 0.00 31.51 2.52
607 769 8.183104 TCAATGTAAGAAGACAGAAGAGAGAA 57.817 34.615 0.00 0.00 31.51 2.87
608 770 7.767250 TCAATGTAAGAAGACAGAAGAGAGA 57.233 36.000 0.00 0.00 31.51 3.10
609 771 7.010367 GCATCAATGTAAGAAGACAGAAGAGAG 59.990 40.741 0.00 0.00 31.51 3.20
610 772 6.815641 GCATCAATGTAAGAAGACAGAAGAGA 59.184 38.462 0.00 0.00 31.51 3.10
611 773 6.036953 GGCATCAATGTAAGAAGACAGAAGAG 59.963 42.308 0.00 0.00 31.51 2.85
612 774 5.877012 GGCATCAATGTAAGAAGACAGAAGA 59.123 40.000 0.00 0.00 31.51 2.87
613 775 5.879223 AGGCATCAATGTAAGAAGACAGAAG 59.121 40.000 0.00 0.00 31.51 2.85
614 776 5.809001 AGGCATCAATGTAAGAAGACAGAA 58.191 37.500 0.00 0.00 31.51 3.02
615 777 5.423015 GAGGCATCAATGTAAGAAGACAGA 58.577 41.667 0.00 0.00 31.51 3.41
616 778 4.269603 CGAGGCATCAATGTAAGAAGACAG 59.730 45.833 0.00 0.00 31.51 3.51
617 779 4.183865 CGAGGCATCAATGTAAGAAGACA 58.816 43.478 0.00 0.00 0.00 3.41
618 780 3.557595 CCGAGGCATCAATGTAAGAAGAC 59.442 47.826 0.00 0.00 0.00 3.01
619 781 3.797039 CCGAGGCATCAATGTAAGAAGA 58.203 45.455 0.00 0.00 0.00 2.87
620 782 2.289002 GCCGAGGCATCAATGTAAGAAG 59.711 50.000 9.58 0.00 41.49 2.85
621 783 2.288666 GCCGAGGCATCAATGTAAGAA 58.711 47.619 9.58 0.00 41.49 2.52
622 784 1.475034 GGCCGAGGCATCAATGTAAGA 60.475 52.381 16.65 0.00 44.11 2.10
623 785 0.947244 GGCCGAGGCATCAATGTAAG 59.053 55.000 16.65 0.00 44.11 2.34
624 786 0.465460 GGGCCGAGGCATCAATGTAA 60.465 55.000 16.65 0.00 44.11 2.41
625 787 1.148273 GGGCCGAGGCATCAATGTA 59.852 57.895 16.65 0.00 44.11 2.29
626 788 2.124151 GGGCCGAGGCATCAATGT 60.124 61.111 16.65 0.00 44.11 2.71
627 789 2.124193 TGGGCCGAGGCATCAATG 60.124 61.111 16.65 0.00 44.11 2.82
628 790 2.194056 CTGGGCCGAGGCATCAAT 59.806 61.111 16.65 0.00 44.11 2.57
629 791 4.802051 GCTGGGCCGAGGCATCAA 62.802 66.667 17.33 0.00 44.11 2.57
640 802 3.696548 GCAAGGAAATATATAGGCTGGGC 59.303 47.826 0.00 0.00 0.00 5.36
641 803 4.263905 TGGCAAGGAAATATATAGGCTGGG 60.264 45.833 0.00 0.00 0.00 4.45
642 804 4.922206 TGGCAAGGAAATATATAGGCTGG 58.078 43.478 0.00 0.00 0.00 4.85
643 805 4.397417 GCTGGCAAGGAAATATATAGGCTG 59.603 45.833 0.00 0.00 0.00 4.85
644 806 4.043310 TGCTGGCAAGGAAATATATAGGCT 59.957 41.667 0.00 0.00 0.00 4.58
645 807 4.335416 TGCTGGCAAGGAAATATATAGGC 58.665 43.478 0.00 0.00 0.00 3.93
646 808 6.899393 TTTGCTGGCAAGGAAATATATAGG 57.101 37.500 3.24 0.00 38.65 2.57
650 812 9.950496 TTTTAATTTTGCTGGCAAGGAAATATA 57.050 25.926 8.78 2.81 42.50 0.86
651 813 8.860780 TTTTAATTTTGCTGGCAAGGAAATAT 57.139 26.923 8.78 3.76 42.50 1.28
652 814 8.860780 ATTTTAATTTTGCTGGCAAGGAAATA 57.139 26.923 8.78 0.00 42.50 1.40
653 815 7.764141 ATTTTAATTTTGCTGGCAAGGAAAT 57.236 28.000 8.78 0.00 42.50 2.17
654 816 7.716998 TGTATTTTAATTTTGCTGGCAAGGAAA 59.283 29.630 3.24 3.24 41.44 3.13
655 817 7.220030 TGTATTTTAATTTTGCTGGCAAGGAA 58.780 30.769 8.04 0.00 37.24 3.36
656 818 6.763355 TGTATTTTAATTTTGCTGGCAAGGA 58.237 32.000 8.04 2.62 37.24 3.36
657 819 7.432350 TTGTATTTTAATTTTGCTGGCAAGG 57.568 32.000 8.04 0.00 37.24 3.61
658 820 7.482428 GCATTGTATTTTAATTTTGCTGGCAAG 59.518 33.333 8.04 0.00 37.24 4.01
659 821 7.040892 TGCATTGTATTTTAATTTTGCTGGCAA 60.041 29.630 3.72 3.72 0.00 4.52
660 822 6.429078 TGCATTGTATTTTAATTTTGCTGGCA 59.571 30.769 0.00 0.00 0.00 4.92
661 823 6.742264 GTGCATTGTATTTTAATTTTGCTGGC 59.258 34.615 0.00 0.00 0.00 4.85
662 824 8.031848 AGTGCATTGTATTTTAATTTTGCTGG 57.968 30.769 0.00 0.00 0.00 4.85
663 825 8.710551 TGAGTGCATTGTATTTTAATTTTGCTG 58.289 29.630 0.00 0.00 0.00 4.41
664 826 8.830201 TGAGTGCATTGTATTTTAATTTTGCT 57.170 26.923 0.00 0.00 0.00 3.91
665 827 9.480538 CATGAGTGCATTGTATTTTAATTTTGC 57.519 29.630 0.00 0.00 30.68 3.68
698 860 9.010366 GCAGTTTCTTAGTTTTTGTACTGAAAG 57.990 33.333 0.00 0.00 42.29 2.62
699 861 8.516234 TGCAGTTTCTTAGTTTTTGTACTGAAA 58.484 29.630 0.00 0.00 35.06 2.69
700 862 8.046294 TGCAGTTTCTTAGTTTTTGTACTGAA 57.954 30.769 0.00 0.00 35.06 3.02
701 863 7.618502 TGCAGTTTCTTAGTTTTTGTACTGA 57.381 32.000 0.00 0.00 35.06 3.41
702 864 6.414987 GCTGCAGTTTCTTAGTTTTTGTACTG 59.585 38.462 16.64 0.00 35.92 2.74
703 865 6.318900 AGCTGCAGTTTCTTAGTTTTTGTACT 59.681 34.615 16.64 0.00 0.00 2.73
704 866 6.414987 CAGCTGCAGTTTCTTAGTTTTTGTAC 59.585 38.462 16.64 0.00 0.00 2.90
705 867 6.459573 CCAGCTGCAGTTTCTTAGTTTTTGTA 60.460 38.462 16.64 0.00 0.00 2.41
706 868 5.343249 CAGCTGCAGTTTCTTAGTTTTTGT 58.657 37.500 16.64 0.00 0.00 2.83
707 869 4.741676 CCAGCTGCAGTTTCTTAGTTTTTG 59.258 41.667 16.64 0.00 0.00 2.44
708 870 4.737649 GCCAGCTGCAGTTTCTTAGTTTTT 60.738 41.667 16.64 0.00 40.77 1.94
709 871 3.243535 GCCAGCTGCAGTTTCTTAGTTTT 60.244 43.478 16.64 0.00 40.77 2.43
710 872 2.294512 GCCAGCTGCAGTTTCTTAGTTT 59.705 45.455 16.64 0.00 40.77 2.66
711 873 1.882623 GCCAGCTGCAGTTTCTTAGTT 59.117 47.619 16.64 0.00 40.77 2.24
712 874 1.528129 GCCAGCTGCAGTTTCTTAGT 58.472 50.000 16.64 0.00 40.77 2.24
713 875 0.807496 GGCCAGCTGCAGTTTCTTAG 59.193 55.000 16.64 0.00 43.89 2.18
714 876 0.609131 GGGCCAGCTGCAGTTTCTTA 60.609 55.000 16.64 0.00 43.89 2.10
715 877 1.905354 GGGCCAGCTGCAGTTTCTT 60.905 57.895 16.64 0.00 43.89 2.52
716 878 2.282745 GGGCCAGCTGCAGTTTCT 60.283 61.111 16.64 0.34 43.89 2.52
717 879 3.741476 CGGGCCAGCTGCAGTTTC 61.741 66.667 16.64 3.27 43.89 2.78
749 911 5.343249 GGCTGCAAGTATTTAACTGAATGG 58.657 41.667 0.50 0.00 38.88 3.16
764 926 1.302511 ACTTACACCGGGCTGCAAG 60.303 57.895 6.32 4.85 0.00 4.01
765 927 1.599518 CACTTACACCGGGCTGCAA 60.600 57.895 6.32 0.00 0.00 4.08
778 940 5.936372 ACACTCGTATAGACACTGACACTTA 59.064 40.000 0.00 0.00 0.00 2.24
796 961 4.156190 ACAGACCTACTACATTCACACTCG 59.844 45.833 0.00 0.00 0.00 4.18
811 976 4.100035 CCTGATGTTGCTATCACAGACCTA 59.900 45.833 0.00 0.00 33.71 3.08
812 977 3.118482 CCTGATGTTGCTATCACAGACCT 60.118 47.826 0.00 0.00 33.71 3.85
813 978 3.118629 TCCTGATGTTGCTATCACAGACC 60.119 47.826 0.00 0.00 33.71 3.85
814 979 4.118410 CTCCTGATGTTGCTATCACAGAC 58.882 47.826 0.00 0.00 33.71 3.51
815 980 3.431346 GCTCCTGATGTTGCTATCACAGA 60.431 47.826 0.00 0.00 33.71 3.41
947 1116 6.309357 CAATTCTGATATTGGAGAATGGGGA 58.691 40.000 0.00 0.00 38.62 4.81
1381 1562 1.587043 CGTCAGTTCTCGCCTCCAGA 61.587 60.000 0.00 0.00 0.00 3.86
1415 1597 2.553602 TCGAATGTCTGCACAGCAAAAT 59.446 40.909 0.00 0.00 38.41 1.82
1436 1618 3.626924 GGAGCTGTGACCGGTGGT 61.627 66.667 14.63 1.80 39.44 4.16
1448 1630 1.271271 CCTTGCAAGAAGAGTGGAGCT 60.271 52.381 28.05 0.00 0.00 4.09
1451 1633 2.951642 CAAACCTTGCAAGAAGAGTGGA 59.048 45.455 28.05 0.00 0.00 4.02
1510 1692 0.881118 ATTCGCAAACAGCAACCGAT 59.119 45.000 0.00 0.00 46.13 4.18
1513 1695 1.408422 GACATTCGCAAACAGCAACC 58.592 50.000 0.00 0.00 46.13 3.77
1514 1696 1.044725 CGACATTCGCAAACAGCAAC 58.955 50.000 0.00 0.00 46.13 4.17
1517 1705 2.093625 TGATACGACATTCGCAAACAGC 59.906 45.455 0.00 0.00 45.12 4.40
1526 1714 5.820131 TGCATCCAAAATGATACGACATTC 58.180 37.500 0.00 0.00 39.19 2.67
1575 1766 1.688735 CATCTTGCCCTATGTCTCCGA 59.311 52.381 0.00 0.00 0.00 4.55
1620 1811 7.092137 AGTAAAAACAAGTGAAAGGTGGTAC 57.908 36.000 0.00 0.00 0.00 3.34
1623 1814 5.290885 GCAAGTAAAAACAAGTGAAAGGTGG 59.709 40.000 0.00 0.00 0.00 4.61
1625 1816 5.099575 CGCAAGTAAAAACAAGTGAAAGGT 58.900 37.500 0.00 0.00 0.00 3.50
1814 2009 7.362662 GTGTGCAGATGATAAACAGAAGAAAA 58.637 34.615 0.00 0.00 0.00 2.29
1846 2041 7.145932 ACAGAAAATAGTGAGGCATGTTAAC 57.854 36.000 0.00 0.00 0.00 2.01
1852 2047 8.757982 ATGATTTACAGAAAATAGTGAGGCAT 57.242 30.769 0.00 0.00 37.93 4.40
1925 2121 9.053472 TCCCTCCACTATCAAGAGTAAAAATAA 57.947 33.333 0.00 0.00 0.00 1.40
1927 2123 7.037586 TGTCCCTCCACTATCAAGAGTAAAAAT 60.038 37.037 0.00 0.00 0.00 1.82
1975 2171 3.778618 TGCGATCTTCATCACTGAGAAG 58.221 45.455 9.99 9.99 41.95 2.85
1983 2179 0.740516 TGCGCTTGCGATCTTCATCA 60.741 50.000 19.55 1.51 43.34 3.07
2033 2229 8.698210 TCAAGCTTTCATGGAAATAGCATAAAT 58.302 29.630 0.00 0.00 30.85 1.40
2172 2378 2.442236 ATTCATCGCCATTCCCAAGT 57.558 45.000 0.00 0.00 0.00 3.16
2231 2437 5.601662 TGGAATTCCAAATGTGCGTTTTAA 58.398 33.333 25.13 0.00 44.35 1.52
2232 2438 5.201713 TGGAATTCCAAATGTGCGTTTTA 57.798 34.783 25.13 0.00 44.35 1.52
2233 2439 4.065321 TGGAATTCCAAATGTGCGTTTT 57.935 36.364 25.13 0.00 44.35 2.43
2275 2481 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2276 2482 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2277 2483 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2278 2484 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2279 2485 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2280 2486 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2281 2487 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2282 2488 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2283 2489 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2284 2490 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2285 2491 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
2286 2492 0.605050 AGCACACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
2293 2499 0.463654 TTCAGGGAGCACACACACAC 60.464 55.000 0.00 0.00 0.00 3.82
2357 2563 0.868406 GAACTCTTGCAGGGTGTTCG 59.132 55.000 15.40 0.00 31.05 3.95
2365 2571 5.991328 TGTAAGAAACAGAACTCTTGCAG 57.009 39.130 0.00 0.00 38.74 4.41
2370 2576 6.064717 AGCCATTTGTAAGAAACAGAACTCT 58.935 36.000 0.00 0.00 39.87 3.24
2374 2580 7.106439 TGAAAGCCATTTGTAAGAAACAGAA 57.894 32.000 0.00 0.00 39.87 3.02
2475 2681 2.071540 CATGCTCTTCTGAAGCGTCAA 58.928 47.619 12.54 0.00 31.88 3.18
2485 2691 2.234661 TCATCCAACGACATGCTCTTCT 59.765 45.455 0.00 0.00 0.00 2.85
2516 2722 3.503365 TGTTTCGGAGAAGAAGACCCTA 58.497 45.455 0.00 0.00 45.90 3.53
2523 2729 5.524971 TCTACACTTGTTTCGGAGAAGAA 57.475 39.130 4.16 0.00 45.90 2.52
2576 2782 2.899256 AGTATTGCCACCAATTTGCAGT 59.101 40.909 0.00 0.00 41.68 4.40
2577 2783 3.598019 AGTATTGCCACCAATTTGCAG 57.402 42.857 0.00 0.00 41.68 4.41
2631 2837 3.782656 TGGTTTACCCTGTCCTTTCTC 57.217 47.619 0.00 0.00 34.29 2.87
2723 2929 4.800023 TCGTTTCTCTGTATAGGGATGGA 58.200 43.478 0.00 0.00 32.26 3.41
2726 2932 4.082679 GCGATCGTTTCTCTGTATAGGGAT 60.083 45.833 17.81 0.00 32.26 3.85
2758 2964 6.993786 TCAGTGTGTGACAACAGAATTTAA 57.006 33.333 0.00 0.00 36.84 1.52
2769 2975 2.677836 GCACTTTCTTCAGTGTGTGACA 59.322 45.455 2.95 0.00 45.31 3.58
2843 3049 1.211212 CTGATCTGATCCTTGGCACCA 59.789 52.381 14.71 0.00 0.00 4.17
3009 3215 1.082104 GCTCGGTTTCTTGTTGCCG 60.082 57.895 0.00 0.00 44.95 5.69
3024 3230 3.365364 CGGTCTTTCCAAAAGATGTGCTC 60.365 47.826 5.50 0.00 35.57 4.26
3160 3366 1.816537 GCTCCGATGAGTAGGTGCA 59.183 57.895 3.99 0.00 43.98 4.57
3208 3414 1.225376 TGGTTGATCCACGCGACAAC 61.225 55.000 15.93 18.60 41.93 3.32
3210 3416 2.737830 TGGTTGATCCACGCGACA 59.262 55.556 15.93 1.60 41.93 4.35
3309 3515 1.152030 TCCCCTTGCAGTCTGTCCT 60.152 57.895 0.93 0.00 0.00 3.85
3316 3522 1.333636 CCGATCTCTCCCCTTGCAGT 61.334 60.000 0.00 0.00 0.00 4.40
3317 3523 1.445095 CCGATCTCTCCCCTTGCAG 59.555 63.158 0.00 0.00 0.00 4.41
3318 3524 2.066393 CCCGATCTCTCCCCTTGCA 61.066 63.158 0.00 0.00 0.00 4.08
3319 3525 2.825264 CCCGATCTCTCCCCTTGC 59.175 66.667 0.00 0.00 0.00 4.01
3320 3526 2.037620 CTGCCCGATCTCTCCCCTTG 62.038 65.000 0.00 0.00 0.00 3.61
3322 3528 2.123077 CTGCCCGATCTCTCCCCT 60.123 66.667 0.00 0.00 0.00 4.79
3324 3530 0.543174 ATACCTGCCCGATCTCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
3325 3531 0.605589 CATACCTGCCCGATCTCTCC 59.394 60.000 0.00 0.00 0.00 3.71
3326 3532 1.621992 TCATACCTGCCCGATCTCTC 58.378 55.000 0.00 0.00 0.00 3.20
3327 3533 1.689273 GTTCATACCTGCCCGATCTCT 59.311 52.381 0.00 0.00 0.00 3.10
3328 3534 1.689273 AGTTCATACCTGCCCGATCTC 59.311 52.381 0.00 0.00 0.00 2.75
3329 3535 1.794714 AGTTCATACCTGCCCGATCT 58.205 50.000 0.00 0.00 0.00 2.75
3330 3536 3.746045 TTAGTTCATACCTGCCCGATC 57.254 47.619 0.00 0.00 0.00 3.69
3331 3537 3.433173 GGTTTAGTTCATACCTGCCCGAT 60.433 47.826 0.00 0.00 0.00 4.18
3332 3538 2.093341 GGTTTAGTTCATACCTGCCCGA 60.093 50.000 0.00 0.00 0.00 5.14
3333 3539 2.285977 GGTTTAGTTCATACCTGCCCG 58.714 52.381 0.00 0.00 0.00 6.13
3334 3540 2.285977 CGGTTTAGTTCATACCTGCCC 58.714 52.381 0.00 0.00 0.00 5.36
3335 3541 2.981898 ACGGTTTAGTTCATACCTGCC 58.018 47.619 0.00 0.00 0.00 4.85
3336 3542 3.749609 ACAACGGTTTAGTTCATACCTGC 59.250 43.478 0.00 0.00 30.96 4.85
3337 3543 4.992319 TCACAACGGTTTAGTTCATACCTG 59.008 41.667 0.00 0.00 30.96 4.00
3338 3544 5.217978 TCACAACGGTTTAGTTCATACCT 57.782 39.130 0.00 0.00 30.96 3.08
3339 3545 6.815142 AGTATCACAACGGTTTAGTTCATACC 59.185 38.462 0.00 0.00 30.96 2.73
3340 3546 7.823149 AGTATCACAACGGTTTAGTTCATAC 57.177 36.000 0.00 0.00 30.96 2.39
3341 3547 7.703621 GCTAGTATCACAACGGTTTAGTTCATA 59.296 37.037 0.00 0.00 30.96 2.15
3342 3548 6.534079 GCTAGTATCACAACGGTTTAGTTCAT 59.466 38.462 0.00 0.00 30.96 2.57
3343 3549 5.865552 GCTAGTATCACAACGGTTTAGTTCA 59.134 40.000 0.00 0.00 30.96 3.18
3344 3550 6.098017 AGCTAGTATCACAACGGTTTAGTTC 58.902 40.000 0.00 0.00 30.96 3.01
3353 3559 4.359706 TGCATGTAGCTAGTATCACAACG 58.640 43.478 0.00 0.00 45.94 4.10
3355 3561 5.917462 ACATGCATGTAGCTAGTATCACAA 58.083 37.500 30.50 0.00 45.94 3.33
3411 3621 3.059325 GTGCATATCAGGACGAATCAAGC 60.059 47.826 0.00 0.00 0.00 4.01
3532 3742 9.796120 GGAGAGATCAATGCAGTAAGTATATAC 57.204 37.037 4.60 4.60 0.00 1.47
3533 3743 9.760926 AGGAGAGATCAATGCAGTAAGTATATA 57.239 33.333 0.00 0.00 0.00 0.86
3534 3744 8.663209 AGGAGAGATCAATGCAGTAAGTATAT 57.337 34.615 0.00 0.00 0.00 0.86
3535 3745 7.947332 AGAGGAGAGATCAATGCAGTAAGTATA 59.053 37.037 0.00 0.00 0.00 1.47
3597 3813 5.652994 TTGCCATTTCATTACCAGGTTAC 57.347 39.130 0.00 0.00 0.00 2.50
3660 3877 2.929398 CCTGTTGTTGAAAAACACAGCC 59.071 45.455 0.00 0.00 34.02 4.85
3686 3903 9.241317 CCGTAAAGAAATATAAGAGCGTTCTTA 57.759 33.333 21.76 21.76 46.84 2.10
3691 3908 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3692 3909 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3693 3910 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3695 3912 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3696 3913 9.473640 GTTACTCCCTCCGTAAAGAAATATAAG 57.526 37.037 0.00 0.00 0.00 1.73
3697 3914 9.205513 AGTTACTCCCTCCGTAAAGAAATATAA 57.794 33.333 0.00 0.00 0.00 0.98
3699 3916 7.672122 AGTTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
3700 3917 8.593945 TTAGTTACTCCCTCCGTAAAGAAATA 57.406 34.615 0.00 0.00 0.00 1.40
3702 3919 6.916360 TTAGTTACTCCCTCCGTAAAGAAA 57.084 37.500 0.00 0.00 0.00 2.52
3705 3922 8.174733 TGATATTAGTTACTCCCTCCGTAAAG 57.825 38.462 0.00 0.00 0.00 1.85
3706 3923 8.000709 TCTGATATTAGTTACTCCCTCCGTAAA 58.999 37.037 0.00 0.00 0.00 2.01
3708 3925 7.083062 TCTGATATTAGTTACTCCCTCCGTA 57.917 40.000 0.00 0.00 0.00 4.02
3711 3928 6.495526 AGCTTCTGATATTAGTTACTCCCTCC 59.504 42.308 0.00 0.00 0.00 4.30
3712 3929 7.375053 CAGCTTCTGATATTAGTTACTCCCTC 58.625 42.308 0.00 0.00 32.44 4.30
3714 3931 5.929415 GCAGCTTCTGATATTAGTTACTCCC 59.071 44.000 0.00 0.00 32.44 4.30
3715 3932 5.631512 CGCAGCTTCTGATATTAGTTACTCC 59.368 44.000 0.00 0.00 32.44 3.85
3716 3933 6.361214 GTCGCAGCTTCTGATATTAGTTACTC 59.639 42.308 0.00 0.00 32.44 2.59
3717 3934 6.210078 GTCGCAGCTTCTGATATTAGTTACT 58.790 40.000 0.00 0.00 32.44 2.24
3718 3935 5.402867 GGTCGCAGCTTCTGATATTAGTTAC 59.597 44.000 0.00 0.00 32.44 2.50
3779 4000 1.134128 TGAAGCAACAGCAAGTCCTCA 60.134 47.619 0.00 0.00 0.00 3.86
3780 4001 1.597742 TGAAGCAACAGCAAGTCCTC 58.402 50.000 0.00 0.00 0.00 3.71
3782 4003 3.077359 AGTATGAAGCAACAGCAAGTCC 58.923 45.455 0.00 0.00 0.00 3.85
3784 4005 3.077359 GGAGTATGAAGCAACAGCAAGT 58.923 45.455 0.00 0.00 0.00 3.16
3844 4065 8.958119 TTTACATATTTACTCCACACTCATCC 57.042 34.615 0.00 0.00 0.00 3.51
3863 4087 8.663167 TCATCTTCATCCCAGTATGATTTACAT 58.337 33.333 0.00 0.00 39.69 2.29
3874 4098 3.584406 TGACAGTTCATCTTCATCCCAGT 59.416 43.478 0.00 0.00 0.00 4.00
3960 4184 0.383949 CACAAAGTCCAAACACCGGG 59.616 55.000 6.32 0.00 0.00 5.73
3963 4187 2.096248 TGACCACAAAGTCCAAACACC 58.904 47.619 0.00 0.00 35.83 4.16
3966 4190 1.067060 GCCTGACCACAAAGTCCAAAC 59.933 52.381 0.00 0.00 35.83 2.93
4100 4339 1.494721 AGCAGAGAGGAACCAAACCAA 59.505 47.619 0.00 0.00 0.00 3.67
4147 4386 3.665409 ACGTACGACACAATCAACTAACG 59.335 43.478 24.41 0.00 0.00 3.18
4154 4393 1.133407 GCACACGTACGACACAATCA 58.867 50.000 24.41 0.00 0.00 2.57
4210 4450 1.832167 AGCTCGAGATGGGCCTCTC 60.832 63.158 18.75 17.84 38.64 3.20
4277 4517 5.772825 TTGAGACAAACCAAATCCTTCTG 57.227 39.130 0.00 0.00 0.00 3.02
4279 4519 5.901552 TGTTTGAGACAAACCAAATCCTTC 58.098 37.500 19.76 0.00 34.69 3.46
4307 4548 8.344446 TGAATGAATCAATGAATCAGTTGACT 57.656 30.769 7.13 1.34 37.19 3.41
4319 4560 9.575783 TGTAACACATGAATGAATGAATCAATG 57.424 29.630 0.00 0.00 42.54 2.82
4327 4568 9.467258 AAAAGACTTGTAACACATGAATGAATG 57.533 29.630 0.00 0.00 0.00 2.67
4329 4570 8.465999 ACAAAAGACTTGTAACACATGAATGAA 58.534 29.630 0.00 0.00 0.00 2.57
4342 4583 6.093495 CCAGAGACAACAACAAAAGACTTGTA 59.907 38.462 0.00 0.00 30.26 2.41
4383 4624 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4385 4626 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4386 4627 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4387 4628 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4388 4629 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4389 4630 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4390 4631 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4391 4632 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4392 4633 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4393 4634 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4394 4635 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4395 4636 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4396 4637 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4399 4640 9.865321 ACTAGTGTCAAAAACGCTCTTATATTA 57.135 29.630 0.00 0.00 45.69 0.98
4400 4641 8.773404 ACTAGTGTCAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 45.69 1.28
4401 4642 9.517609 CTACTAGTGTCAAAAACGCTCTTATAT 57.482 33.333 5.39 0.00 45.69 0.86
4402 4643 8.517878 ACTACTAGTGTCAAAAACGCTCTTATA 58.482 33.333 5.39 0.00 45.69 0.98
4403 4644 7.376615 ACTACTAGTGTCAAAAACGCTCTTAT 58.623 34.615 5.39 0.00 45.69 1.73
4404 4645 6.742109 ACTACTAGTGTCAAAAACGCTCTTA 58.258 36.000 5.39 0.00 45.69 2.10
4405 4646 5.598769 ACTACTAGTGTCAAAAACGCTCTT 58.401 37.500 5.39 0.00 45.69 2.85
4406 4647 5.197682 ACTACTAGTGTCAAAAACGCTCT 57.802 39.130 5.39 0.00 45.69 4.09
4407 4648 5.690857 AGAACTACTAGTGTCAAAAACGCTC 59.309 40.000 5.39 0.00 45.69 5.03
4409 4650 5.690857 AGAGAACTACTAGTGTCAAAAACGC 59.309 40.000 5.39 0.00 38.74 4.84
4410 4651 6.916387 TCAGAGAACTACTAGTGTCAAAAACG 59.084 38.462 5.39 0.00 0.00 3.60
4411 4652 8.644318 TTCAGAGAACTACTAGTGTCAAAAAC 57.356 34.615 5.39 0.00 0.00 2.43
4412 4653 7.438459 GCTTCAGAGAACTACTAGTGTCAAAAA 59.562 37.037 5.39 0.00 0.00 1.94
4413 4654 6.924060 GCTTCAGAGAACTACTAGTGTCAAAA 59.076 38.462 5.39 0.00 0.00 2.44
4414 4655 6.265649 AGCTTCAGAGAACTACTAGTGTCAAA 59.734 38.462 5.39 0.00 0.00 2.69
4415 4656 5.770663 AGCTTCAGAGAACTACTAGTGTCAA 59.229 40.000 5.39 0.00 0.00 3.18
4416 4657 5.317808 AGCTTCAGAGAACTACTAGTGTCA 58.682 41.667 5.39 0.00 0.00 3.58
4417 4658 5.890424 AGCTTCAGAGAACTACTAGTGTC 57.110 43.478 5.39 0.18 0.00 3.67
4418 4659 5.770663 TCAAGCTTCAGAGAACTACTAGTGT 59.229 40.000 5.39 0.00 0.00 3.55
4419 4660 6.072175 ACTCAAGCTTCAGAGAACTACTAGTG 60.072 42.308 18.03 0.00 35.83 2.74
4420 4661 6.007703 ACTCAAGCTTCAGAGAACTACTAGT 58.992 40.000 18.03 0.00 35.83 2.57
4421 4662 6.509418 ACTCAAGCTTCAGAGAACTACTAG 57.491 41.667 18.03 0.00 35.83 2.57
4485 4727 8.458843 CACTGAACAGAGAAAACTAAAGGAAAA 58.541 33.333 8.87 0.00 0.00 2.29
4489 4731 6.927294 ACACTGAACAGAGAAAACTAAAGG 57.073 37.500 8.87 0.00 0.00 3.11
4491 4733 8.561738 AAGAACACTGAACAGAGAAAACTAAA 57.438 30.769 8.87 0.00 0.00 1.85
4505 4752 4.511454 GCACATCACTGTAAGAACACTGAA 59.489 41.667 0.00 0.00 33.79 3.02
4508 4755 3.181455 TGGCACATCACTGTAAGAACACT 60.181 43.478 0.00 0.00 37.43 3.55
4632 4893 7.440856 GCAGGGTTTTAACTGAATGAATGAAAA 59.559 33.333 0.00 0.00 36.86 2.29
4635 4900 5.538053 TGCAGGGTTTTAACTGAATGAATGA 59.462 36.000 0.00 0.00 36.86 2.57
4663 4928 0.245539 ATGACACTTACACCGGACCG 59.754 55.000 9.46 6.99 0.00 4.79
4664 4929 2.073816 CAATGACACTTACACCGGACC 58.926 52.381 9.46 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.