Multiple sequence alignment - TraesCS1D01G447800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G447800 chr1D 100.000 3768 0 0 1 3768 490367957 490371724 0.000000e+00 6959.0
1 TraesCS1D01G447800 chr1D 96.798 1374 36 3 1114 2486 460532461 460533827 0.000000e+00 2287.0
2 TraesCS1D01G447800 chr1D 95.892 998 36 4 3 995 463249904 463250901 0.000000e+00 1611.0
3 TraesCS1D01G447800 chr1D 95.199 604 17 3 2483 3075 460533895 460534497 0.000000e+00 944.0
4 TraesCS1D01G447800 chr1D 91.639 299 24 1 3361 3659 460534523 460534820 2.710000e-111 412.0
5 TraesCS1D01G447800 chr1D 89.000 100 11 0 3656 3755 287480950 287480851 1.420000e-24 124.0
6 TraesCS1D01G447800 chr1D 82.883 111 17 2 3658 3767 463975952 463976061 8.610000e-17 99.0
7 TraesCS1D01G447800 chr1D 83.654 104 13 4 3656 3757 406679285 406679386 1.110000e-15 95.3
8 TraesCS1D01G447800 chr1D 83.333 102 15 2 3656 3756 314980690 314980790 4.010000e-15 93.5
9 TraesCS1D01G447800 chr1D 93.548 62 4 0 3655 3716 454645896 454645957 4.010000e-15 93.5
10 TraesCS1D01G447800 chr1D 90.909 66 4 2 1014 1078 460532315 460532379 1.860000e-13 87.9
11 TraesCS1D01G447800 chr1D 81.132 106 18 2 3656 3760 310148258 310148154 2.410000e-12 84.2
12 TraesCS1D01G447800 chr4D 96.189 997 34 3 3 995 35124710 35123714 0.000000e+00 1628.0
13 TraesCS1D01G447800 chr4D 95.691 998 38 4 1 995 364026897 364025902 0.000000e+00 1600.0
14 TraesCS1D01G447800 chr4D 92.929 99 7 0 3658 3756 97780824 97780922 1.090000e-30 145.0
15 TraesCS1D01G447800 chr4D 86.957 115 12 3 3656 3768 53192971 53193084 3.950000e-25 126.0
16 TraesCS1D01G447800 chr4D 81.250 112 16 3 3658 3768 303049419 303049312 6.710000e-13 86.1
17 TraesCS1D01G447800 chr4D 90.164 61 6 0 3656 3716 357651908 357651848 3.120000e-11 80.5
18 TraesCS1D01G447800 chr4D 100.000 41 0 0 3658 3698 502682146 502682186 4.040000e-10 76.8
19 TraesCS1D01G447800 chr4D 79.048 105 18 3 3654 3756 6069666 6069768 6.750000e-08 69.4
20 TraesCS1D01G447800 chr4D 100.000 33 0 0 3724 3756 16721507 16721539 1.130000e-05 62.1
21 TraesCS1D01G447800 chrUn 95.587 997 41 2 2 995 45207434 45208430 0.000000e+00 1594.0
22 TraesCS1D01G447800 chrUn 83.590 195 22 7 2776 2969 50813683 50813498 1.390000e-39 174.0
23 TraesCS1D01G447800 chrUn 82.292 96 5 5 3661 3756 25996883 25996800 5.220000e-09 73.1
24 TraesCS1D01G447800 chrUn 81.818 99 6 5 3658 3756 255745663 255745749 5.220000e-09 73.1
25 TraesCS1D01G447800 chrUn 81.250 96 6 5 3661 3756 26108830 26108747 2.430000e-07 67.6
26 TraesCS1D01G447800 chrUn 80.808 99 7 5 3658 3756 183930039 183930125 2.430000e-07 67.6
27 TraesCS1D01G447800 chrUn 81.250 96 6 5 3661 3756 210968463 210968380 2.430000e-07 67.6
28 TraesCS1D01G447800 chrUn 81.250 96 6 5 3661 3756 253004632 253004549 2.430000e-07 67.6
29 TraesCS1D01G447800 chrUn 80.808 99 7 5 3658 3756 318905269 318905355 2.430000e-07 67.6
30 TraesCS1D01G447800 chrUn 95.122 41 2 0 3659 3699 29127463 29127503 8.740000e-07 65.8
31 TraesCS1D01G447800 chrUn 97.368 38 0 1 3658 3694 100283261 100283224 3.140000e-06 63.9
32 TraesCS1D01G447800 chr6D 95.386 997 42 3 3 995 449814437 449815433 0.000000e+00 1583.0
33 TraesCS1D01G447800 chr6D 87.611 113 14 0 3656 3768 450181790 450181678 8.490000e-27 132.0
34 TraesCS1D01G447800 chr6D 80.702 114 18 3 3657 3768 354365873 354365762 6.710000e-13 86.1
35 TraesCS1D01G447800 chr6D 95.455 44 2 0 3658 3701 377889253 377889210 1.880000e-08 71.3
36 TraesCS1D01G447800 chr6D 97.368 38 1 0 3656 3693 67519559 67519522 8.740000e-07 65.8
37 TraesCS1D01G447800 chr6D 97.143 35 1 0 3655 3689 81162911 81162945 4.060000e-05 60.2
38 TraesCS1D01G447800 chr5D 95.090 998 43 5 2 995 510945254 510946249 0.000000e+00 1567.0
39 TraesCS1D01G447800 chr5D 88.496 113 13 0 3656 3768 127931708 127931596 1.830000e-28 137.0
40 TraesCS1D01G447800 chr5D 85.455 110 16 0 3659 3768 375729023 375729132 8.550000e-22 115.0
41 TraesCS1D01G447800 chr5D 82.609 115 17 3 3655 3768 510874473 510874585 8.610000e-17 99.0
42 TraesCS1D01G447800 chr5D 82.143 112 18 2 3658 3768 489773926 489773816 1.110000e-15 95.3
43 TraesCS1D01G447800 chr7D 94.885 997 45 5 3 995 43790356 43789362 0.000000e+00 1554.0
44 TraesCS1D01G447800 chr7D 94.880 996 46 4 3 995 638524602 638525595 0.000000e+00 1552.0
45 TraesCS1D01G447800 chr7D 86.726 113 15 0 3656 3768 449496504 449496392 3.950000e-25 126.0
46 TraesCS1D01G447800 chr7D 84.483 116 18 0 3653 3768 473110706 473110591 8.550000e-22 115.0
47 TraesCS1D01G447800 chr7D 86.139 101 14 0 3656 3756 611126216 611126116 3.980000e-20 110.0
48 TraesCS1D01G447800 chr7D 83.333 114 18 1 3656 3768 29738694 29738807 1.850000e-18 104.0
49 TraesCS1D01G447800 chr3D 94.705 1001 47 5 1 997 597183186 597182188 0.000000e+00 1550.0
50 TraesCS1D01G447800 chr4A 75.450 778 151 26 1726 2486 5524918 5525672 3.600000e-90 342.0
51 TraesCS1D01G447800 chr4A 89.189 111 12 0 3658 3768 691642622 691642512 5.080000e-29 139.0
52 TraesCS1D01G447800 chr4B 75.126 792 153 28 1706 2476 625980328 625981096 7.800000e-87 331.0
53 TraesCS1D01G447800 chr4B 82.564 195 24 8 2776 2969 222753762 222753947 3.010000e-36 163.0
54 TraesCS1D01G447800 chr2D 82.022 267 36 8 2723 2989 14124993 14124739 2.280000e-52 217.0
55 TraesCS1D01G447800 chr2D 89.899 99 10 0 3658 3756 386673854 386673952 1.100000e-25 128.0
56 TraesCS1D01G447800 chr2A 80.970 268 36 10 2723 2989 16494408 16494155 8.260000e-47 198.0
57 TraesCS1D01G447800 chr6A 80.220 273 37 14 2776 3040 239254653 239254916 4.970000e-44 189.0
58 TraesCS1D01G447800 chr6A 80.220 273 37 13 2776 3040 477477496 477477233 4.970000e-44 189.0
59 TraesCS1D01G447800 chr6A 83.077 195 23 7 2776 2969 447734853 447734668 6.470000e-38 169.0
60 TraesCS1D01G447800 chr3B 80.220 273 37 13 2776 3040 807023092 807022829 4.970000e-44 189.0
61 TraesCS1D01G447800 chr3B 86.486 111 14 1 3658 3768 655093324 655093215 1.840000e-23 121.0
62 TraesCS1D01G447800 chr2B 80.220 273 37 13 2776 3040 790455314 790455051 4.970000e-44 189.0
63 TraesCS1D01G447800 chr1B 80.220 273 37 13 2776 3040 82989516 82989253 4.970000e-44 189.0
64 TraesCS1D01G447800 chr7B 83.254 209 25 8 2776 2983 382086211 382086410 2.310000e-42 183.0
65 TraesCS1D01G447800 chr7B 79.853 273 38 13 2776 3040 554077230 554076967 2.310000e-42 183.0
66 TraesCS1D01G447800 chr7B 86.923 130 10 5 2841 2969 404339259 404339136 5.080000e-29 139.0
67 TraesCS1D01G447800 chr6B 79.853 273 38 13 2776 3040 40508480 40508743 2.310000e-42 183.0
68 TraesCS1D01G447800 chr6B 82.258 186 23 7 2785 2969 199256874 199256698 6.520000e-33 152.0
69 TraesCS1D01G447800 chr5B 83.590 195 22 7 2776 2969 147891957 147891772 1.390000e-39 174.0
70 TraesCS1D01G447800 chr5B 82.564 195 24 7 2776 2969 312383554 312383369 3.010000e-36 163.0
71 TraesCS1D01G447800 chr5B 82.564 195 24 7 2776 2969 396375959 396375774 3.010000e-36 163.0
72 TraesCS1D01G447800 chr5B 91.589 107 6 3 3664 3768 534469737 534469632 1.090000e-30 145.0
73 TraesCS1D01G447800 chr5B 89.109 101 7 3 3658 3756 552560970 552560872 5.110000e-24 122.0
74 TraesCS1D01G447800 chr7A 81.771 192 24 4 2294 2475 5744458 5744648 2.340000e-32 150.0
75 TraesCS1D01G447800 chr3A 91.919 99 8 0 3658 3756 107022503 107022405 5.080000e-29 139.0
76 TraesCS1D01G447800 chr1A 88.000 100 12 0 3657 3756 571934571 571934670 6.610000e-23 119.0
77 TraesCS1D01G447800 chr1A 85.841 113 12 1 3656 3768 555291397 555291289 2.380000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G447800 chr1D 490367957 490371724 3767 False 6959.000 6959 100.00000 1 3768 1 chr1D.!!$F6 3767
1 TraesCS1D01G447800 chr1D 463249904 463250901 997 False 1611.000 1611 95.89200 3 995 1 chr1D.!!$F4 992
2 TraesCS1D01G447800 chr1D 460532315 460534820 2505 False 932.725 2287 93.63625 1014 3659 4 chr1D.!!$F7 2645
3 TraesCS1D01G447800 chr4D 35123714 35124710 996 True 1628.000 1628 96.18900 3 995 1 chr4D.!!$R1 992
4 TraesCS1D01G447800 chr4D 364025902 364026897 995 True 1600.000 1600 95.69100 1 995 1 chr4D.!!$R4 994
5 TraesCS1D01G447800 chrUn 45207434 45208430 996 False 1594.000 1594 95.58700 2 995 1 chrUn.!!$F2 993
6 TraesCS1D01G447800 chr6D 449814437 449815433 996 False 1583.000 1583 95.38600 3 995 1 chr6D.!!$F2 992
7 TraesCS1D01G447800 chr5D 510945254 510946249 995 False 1567.000 1567 95.09000 2 995 1 chr5D.!!$F3 993
8 TraesCS1D01G447800 chr7D 43789362 43790356 994 True 1554.000 1554 94.88500 3 995 1 chr7D.!!$R1 992
9 TraesCS1D01G447800 chr7D 638524602 638525595 993 False 1552.000 1552 94.88000 3 995 1 chr7D.!!$F2 992
10 TraesCS1D01G447800 chr3D 597182188 597183186 998 True 1550.000 1550 94.70500 1 997 1 chr3D.!!$R1 996
11 TraesCS1D01G447800 chr4A 5524918 5525672 754 False 342.000 342 75.45000 1726 2486 1 chr4A.!!$F1 760
12 TraesCS1D01G447800 chr4B 625980328 625981096 768 False 331.000 331 75.12600 1706 2476 1 chr4B.!!$F2 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 816 0.106819 AGGTACGAGGCCTGACGTAT 60.107 55.0 24.5 11.03 44.50 3.06 F
1108 1182 0.094216 CGATTGCTCGTGACTTGCTG 59.906 55.0 0.0 0.00 40.07 4.41 F
1152 1226 0.109597 GCACTCCAGAAACAATGGCG 60.110 55.0 0.0 0.00 37.76 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2333 2423 0.178990 ACCTTCCCTCAACCAGCAAC 60.179 55.0 0.00 0.0 0.00 4.17 R
2540 2703 1.086696 TTAGCTCCAGCAATTCGCAC 58.913 50.0 0.48 0.0 46.13 5.34 R
3126 3300 0.108615 ACAGCACATGGACTCGTAGC 60.109 55.0 0.00 0.0 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.883730 CCATACGTGTGGGCGTCG 60.884 66.667 22.66 0.00 44.55 5.12
56 57 3.529341 AACTCGCCCACACGCATGA 62.529 57.895 0.00 0.00 0.00 3.07
65 66 1.078709 CACACGCATGAATCCTCGTT 58.921 50.000 0.00 0.00 32.38 3.85
131 134 2.372264 CCACGTAGGACTAAGCTGGTA 58.628 52.381 0.00 0.00 41.22 3.25
336 342 4.339247 GTGTTTCTGCAGGTATATGGCAAT 59.661 41.667 15.13 0.00 37.06 3.56
469 478 4.584325 TCTTTCTTTTACATGGCAACTGCT 59.416 37.500 1.06 0.00 41.70 4.24
521 530 6.059484 TCTCTCTTTTACCCGAACATGTTTT 58.941 36.000 13.36 0.60 0.00 2.43
591 601 2.712087 TGGGTGGCAACTCCTAAAGTTA 59.288 45.455 0.97 0.00 46.69 2.24
657 667 1.274167 CAGTTGAGCAACCATGGCAAT 59.726 47.619 13.04 0.00 42.06 3.56
727 737 3.062042 GTTAAACGAACATGGACGAGGT 58.938 45.455 17.79 7.12 38.02 3.85
806 816 0.106819 AGGTACGAGGCCTGACGTAT 60.107 55.000 24.50 11.03 44.50 3.06
816 826 1.669049 CCTGACGTATGGGGCGTGTA 61.669 60.000 0.00 0.00 43.04 2.90
840 850 3.191669 CGTTATCTATTTCGCCCACACA 58.808 45.455 0.00 0.00 0.00 3.72
841 851 3.619483 CGTTATCTATTTCGCCCACACAA 59.381 43.478 0.00 0.00 0.00 3.33
891 902 2.373335 ACAAGGTGTGTGGGCATTAA 57.627 45.000 0.00 0.00 39.72 1.40
975 987 4.419921 CCCCCTAACGCCCACACC 62.420 72.222 0.00 0.00 0.00 4.16
997 1009 1.588404 GTGACACTTATCGGCGTCATG 59.412 52.381 6.85 2.34 40.27 3.07
998 1010 1.209128 GACACTTATCGGCGTCATGG 58.791 55.000 6.85 0.00 0.00 3.66
999 1011 0.535335 ACACTTATCGGCGTCATGGT 59.465 50.000 6.85 0.00 0.00 3.55
1000 1012 1.209128 CACTTATCGGCGTCATGGTC 58.791 55.000 6.85 0.00 0.00 4.02
1001 1013 1.112113 ACTTATCGGCGTCATGGTCT 58.888 50.000 6.85 0.00 0.00 3.85
1002 1014 1.480954 ACTTATCGGCGTCATGGTCTT 59.519 47.619 6.85 0.00 0.00 3.01
1003 1015 2.093658 ACTTATCGGCGTCATGGTCTTT 60.094 45.455 6.85 0.00 0.00 2.52
1004 1016 2.684001 TATCGGCGTCATGGTCTTTT 57.316 45.000 6.85 0.00 0.00 2.27
1005 1017 1.821216 ATCGGCGTCATGGTCTTTTT 58.179 45.000 6.85 0.00 0.00 1.94
1006 1018 2.459060 TCGGCGTCATGGTCTTTTTA 57.541 45.000 6.85 0.00 0.00 1.52
1007 1019 2.343101 TCGGCGTCATGGTCTTTTTAG 58.657 47.619 6.85 0.00 0.00 1.85
1008 1020 1.396996 CGGCGTCATGGTCTTTTTAGG 59.603 52.381 0.00 0.00 0.00 2.69
1009 1021 2.706890 GGCGTCATGGTCTTTTTAGGA 58.293 47.619 0.00 0.00 0.00 2.94
1010 1022 3.078837 GGCGTCATGGTCTTTTTAGGAA 58.921 45.455 0.00 0.00 0.00 3.36
1011 1023 3.119955 GGCGTCATGGTCTTTTTAGGAAC 60.120 47.826 0.00 0.00 0.00 3.62
1012 1024 3.500680 GCGTCATGGTCTTTTTAGGAACA 59.499 43.478 0.00 0.00 34.75 3.18
1019 1031 4.578928 TGGTCTTTTTAGGAACAAGTCTGC 59.421 41.667 0.00 0.00 0.00 4.26
1023 1035 5.763204 TCTTTTTAGGAACAAGTCTGCGATT 59.237 36.000 0.00 0.00 0.00 3.34
1024 1036 6.262273 TCTTTTTAGGAACAAGTCTGCGATTT 59.738 34.615 0.00 0.00 0.00 2.17
1026 1038 7.499321 TTTTAGGAACAAGTCTGCGATTTTA 57.501 32.000 0.00 0.00 0.00 1.52
1032 1044 7.382218 AGGAACAAGTCTGCGATTTTATTTTTG 59.618 33.333 0.00 0.00 0.00 2.44
1079 1091 4.431131 CGTCCTGGGCCTTGGCAT 62.431 66.667 14.04 0.00 0.00 4.40
1083 1157 2.353610 CCTGGGCCTTGGCATGAAC 61.354 63.158 14.04 0.00 0.00 3.18
1084 1158 1.304713 CTGGGCCTTGGCATGAACT 60.305 57.895 14.04 0.00 0.00 3.01
1090 1164 1.081892 CCTTGGCATGAACTGAGACG 58.918 55.000 0.00 0.00 0.00 4.18
1107 1181 2.449548 CGATTGCTCGTGACTTGCT 58.550 52.632 0.00 0.00 40.07 3.91
1108 1182 0.094216 CGATTGCTCGTGACTTGCTG 59.906 55.000 0.00 0.00 40.07 4.41
1109 1183 0.179205 GATTGCTCGTGACTTGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
1110 1184 0.604780 ATTGCTCGTGACTTGCTGCT 60.605 50.000 0.00 0.00 0.00 4.24
1111 1185 1.501337 TTGCTCGTGACTTGCTGCTG 61.501 55.000 0.00 0.00 0.00 4.41
1112 1186 2.675056 GCTCGTGACTTGCTGCTGG 61.675 63.158 0.00 0.00 0.00 4.85
1113 1187 2.666190 TCGTGACTTGCTGCTGGC 60.666 61.111 0.00 0.00 42.22 4.85
1114 1188 4.081030 CGTGACTTGCTGCTGGCG 62.081 66.667 0.00 0.00 45.43 5.69
1115 1189 2.666190 GTGACTTGCTGCTGGCGA 60.666 61.111 0.00 0.00 45.43 5.54
1152 1226 0.109597 GCACTCCAGAAACAATGGCG 60.110 55.000 0.00 0.00 37.76 5.69
1160 1234 2.096069 CAGAAACAATGGCGAGTGACAG 60.096 50.000 2.36 0.00 35.77 3.51
1169 1243 1.288439 CGAGTGACAGTGAGCTGCT 59.712 57.895 0.00 0.00 46.30 4.24
1172 1246 1.070445 GTGACAGTGAGCTGCTGGT 59.930 57.895 7.01 0.00 46.30 4.00
1194 1268 1.227002 GGCGGATCCTGAGTCGAAC 60.227 63.158 10.75 0.00 0.00 3.95
1200 1274 0.252284 ATCCTGAGTCGAACCCCACT 60.252 55.000 0.00 0.00 0.00 4.00
1399 1473 2.594119 CTTCCTCGACACCTACGGCG 62.594 65.000 4.80 4.80 0.00 6.46
1400 1474 4.849329 CCTCGACACCTACGGCGC 62.849 72.222 6.90 0.00 0.00 6.53
1401 1475 3.812019 CTCGACACCTACGGCGCT 61.812 66.667 6.90 0.00 0.00 5.92
1402 1476 3.736482 CTCGACACCTACGGCGCTC 62.736 68.421 6.90 0.00 0.00 5.03
1450 1524 2.573609 CTTGGATCCCGACGTCACCC 62.574 65.000 17.16 8.80 0.00 4.61
1557 1631 4.634151 GGGTATATCCTCCTCTGGGATACC 60.634 54.167 4.81 12.83 45.18 2.73
1623 1697 3.765257 CTCCCTCCCGATGCCTCCT 62.765 68.421 0.00 0.00 0.00 3.69
1624 1698 3.554342 CCCTCCCGATGCCTCCTG 61.554 72.222 0.00 0.00 0.00 3.86
1625 1699 4.247380 CCTCCCGATGCCTCCTGC 62.247 72.222 0.00 0.00 41.77 4.85
1643 1717 1.219124 CCGATGATATCAGGGCGGG 59.781 63.158 25.20 13.22 36.22 6.13
1647 1721 4.314440 GATATCAGGGCGGGCGCA 62.314 66.667 10.83 0.00 44.11 6.09
1788 1862 1.658673 GTCGTTCCGAGTGGTCTGT 59.341 57.895 0.00 0.00 36.23 3.41
1816 1890 5.303333 TGCAGTGATGAATATAGGGTTCGTA 59.697 40.000 0.00 0.00 0.00 3.43
1820 1894 4.828939 TGATGAATATAGGGTTCGTACCGT 59.171 41.667 11.27 11.27 46.04 4.83
1889 1969 0.181350 GGGACAACCATGAGGGCTAG 59.819 60.000 0.00 0.00 42.05 3.42
1956 2045 3.501445 GCTATGGAACTGGAAGCATGATC 59.499 47.826 0.00 0.00 37.60 2.92
1974 2063 3.635836 TGATCAAAATTGACACTGCCACA 59.364 39.130 0.00 0.00 40.49 4.17
2182 2272 1.084227 GTTCCGAAATCGATCGCGC 60.084 57.895 11.09 0.00 43.02 6.86
2333 2423 4.161189 TCCTTGGAGACTATGAAGCTTGAG 59.839 45.833 2.10 0.31 0.00 3.02
2476 2568 4.751600 TGTCATCGCATATGAGGAAATGAC 59.248 41.667 22.14 22.14 41.03 3.06
2486 2578 4.286297 TGAGGAAATGACCGACAATTCT 57.714 40.909 9.11 0.00 38.18 2.40
2487 2579 4.002982 TGAGGAAATGACCGACAATTCTG 58.997 43.478 9.11 0.00 38.18 3.02
2488 2580 4.003648 GAGGAAATGACCGACAATTCTGT 58.996 43.478 9.11 0.00 38.18 3.41
2530 2693 8.214721 TCGCATAGAGGTATTCAGATATACTG 57.785 38.462 0.00 0.00 46.97 2.74
2630 2794 5.427378 TGAATACTGCTATGCTGCTTAACA 58.573 37.500 0.00 0.00 0.00 2.41
2643 2807 5.049060 TGCTGCTTAACATATTTGTGTTCGT 60.049 36.000 0.00 0.00 41.18 3.85
2681 2845 3.569194 TTCTGGTGGTTTAGCTGTGAA 57.431 42.857 0.00 0.00 0.00 3.18
2687 2851 4.202101 TGGTGGTTTAGCTGTGAATTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
2695 2859 7.636259 TTAGCTGTGAATTGTTGTAATTTGC 57.364 32.000 0.00 0.00 0.00 3.68
2701 2865 6.145209 TGTGAATTGTTGTAATTTGCATTCCG 59.855 34.615 0.00 0.00 0.00 4.30
2721 2885 3.115554 CGGTTTGCAATATTAAGCAGCC 58.884 45.455 0.00 10.67 42.39 4.85
2765 2929 9.424319 GATGTCAGAGAATGTTGAAAGTAGTTA 57.576 33.333 0.00 0.00 0.00 2.24
2806 2970 5.862924 ATGGAATTCTTAATACGCATCCG 57.137 39.130 5.23 0.00 41.14 4.18
2913 3087 5.864474 TGATTTTTGTAAGCACGTGTTTGTT 59.136 32.000 25.51 12.62 0.00 2.83
2988 3162 3.923461 GCTTGTACTGAGTGCTTGACTAG 59.077 47.826 1.74 0.00 33.83 2.57
2989 3163 4.489810 CTTGTACTGAGTGCTTGACTAGG 58.510 47.826 1.74 0.00 33.83 3.02
3046 3220 1.511850 TGGTGACTTGCATTCAGTCG 58.488 50.000 11.42 0.00 35.51 4.18
3073 3247 3.181445 TGTTAGTCAGTTGGTGCCTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
3074 3248 4.041075 TGTTAGTCAGTTGGTGCCTTGATA 59.959 41.667 0.00 0.00 0.00 2.15
3075 3249 3.340814 AGTCAGTTGGTGCCTTGATAG 57.659 47.619 0.00 0.00 0.00 2.08
3076 3250 2.906389 AGTCAGTTGGTGCCTTGATAGA 59.094 45.455 0.00 0.00 0.00 1.98
3077 3251 3.003480 GTCAGTTGGTGCCTTGATAGAC 58.997 50.000 0.00 0.00 0.00 2.59
3078 3252 2.906389 TCAGTTGGTGCCTTGATAGACT 59.094 45.455 0.00 0.00 0.00 3.24
3079 3253 4.081642 GTCAGTTGGTGCCTTGATAGACTA 60.082 45.833 0.00 0.00 0.00 2.59
3080 3254 4.160439 TCAGTTGGTGCCTTGATAGACTAG 59.840 45.833 0.00 0.00 0.00 2.57
3081 3255 4.160439 CAGTTGGTGCCTTGATAGACTAGA 59.840 45.833 0.00 0.00 0.00 2.43
3082 3256 4.777896 AGTTGGTGCCTTGATAGACTAGAA 59.222 41.667 0.00 0.00 0.00 2.10
3083 3257 5.426833 AGTTGGTGCCTTGATAGACTAGAAT 59.573 40.000 0.00 0.00 0.00 2.40
3084 3258 6.611642 AGTTGGTGCCTTGATAGACTAGAATA 59.388 38.462 0.00 0.00 0.00 1.75
3085 3259 6.406692 TGGTGCCTTGATAGACTAGAATAC 57.593 41.667 0.00 0.00 0.00 1.89
3086 3260 6.136857 TGGTGCCTTGATAGACTAGAATACT 58.863 40.000 0.00 0.00 0.00 2.12
3087 3261 6.040955 TGGTGCCTTGATAGACTAGAATACTG 59.959 42.308 0.00 0.00 0.00 2.74
3088 3262 5.923684 GTGCCTTGATAGACTAGAATACTGC 59.076 44.000 0.00 0.00 0.00 4.40
3089 3263 5.157781 GCCTTGATAGACTAGAATACTGCG 58.842 45.833 0.00 0.00 0.00 5.18
3090 3264 5.278561 GCCTTGATAGACTAGAATACTGCGT 60.279 44.000 0.00 0.00 0.00 5.24
3091 3265 6.072618 GCCTTGATAGACTAGAATACTGCGTA 60.073 42.308 0.00 0.00 0.00 4.42
3092 3266 7.362229 GCCTTGATAGACTAGAATACTGCGTAT 60.362 40.741 0.00 0.00 0.00 3.06
3093 3267 8.178964 CCTTGATAGACTAGAATACTGCGTATC 58.821 40.741 0.00 0.00 0.00 2.24
3094 3268 8.850007 TTGATAGACTAGAATACTGCGTATCT 57.150 34.615 0.00 4.71 0.00 1.98
3095 3269 9.939802 TTGATAGACTAGAATACTGCGTATCTA 57.060 33.333 0.00 0.00 0.00 1.98
3096 3270 9.939802 TGATAGACTAGAATACTGCGTATCTAA 57.060 33.333 0.00 0.00 0.00 2.10
3126 3300 9.912634 AATACTATGAAAAACTGGTTGTTGATG 57.087 29.630 0.00 0.00 39.13 3.07
3127 3301 6.215845 ACTATGAAAAACTGGTTGTTGATGC 58.784 36.000 0.00 0.00 39.13 3.91
3128 3302 4.734398 TGAAAAACTGGTTGTTGATGCT 57.266 36.364 0.00 0.00 39.13 3.79
3129 3303 5.843673 TGAAAAACTGGTTGTTGATGCTA 57.156 34.783 0.00 0.00 39.13 3.49
3130 3304 5.587289 TGAAAAACTGGTTGTTGATGCTAC 58.413 37.500 0.00 0.00 39.13 3.58
3131 3305 3.896648 AAACTGGTTGTTGATGCTACG 57.103 42.857 0.00 0.00 39.13 3.51
3132 3306 2.831685 ACTGGTTGTTGATGCTACGA 57.168 45.000 0.00 0.00 0.00 3.43
3133 3307 2.688507 ACTGGTTGTTGATGCTACGAG 58.311 47.619 0.00 0.00 0.00 4.18
3134 3308 2.037251 ACTGGTTGTTGATGCTACGAGT 59.963 45.455 0.00 0.00 31.32 4.18
3135 3309 2.668457 CTGGTTGTTGATGCTACGAGTC 59.332 50.000 0.00 0.00 0.00 3.36
3136 3310 2.000447 GGTTGTTGATGCTACGAGTCC 59.000 52.381 0.00 0.00 0.00 3.85
3137 3311 2.611971 GGTTGTTGATGCTACGAGTCCA 60.612 50.000 0.00 0.00 0.00 4.02
3138 3312 3.262420 GTTGTTGATGCTACGAGTCCAT 58.738 45.455 0.00 0.00 0.00 3.41
3139 3313 2.892374 TGTTGATGCTACGAGTCCATG 58.108 47.619 0.00 0.00 0.00 3.66
3140 3314 2.233676 TGTTGATGCTACGAGTCCATGT 59.766 45.455 0.00 0.00 0.00 3.21
3141 3315 2.584492 TGATGCTACGAGTCCATGTG 57.416 50.000 0.00 0.00 0.00 3.21
3142 3316 1.212616 GATGCTACGAGTCCATGTGC 58.787 55.000 0.00 0.00 0.00 4.57
3143 3317 0.826715 ATGCTACGAGTCCATGTGCT 59.173 50.000 0.00 0.00 0.00 4.40
3144 3318 0.108662 TGCTACGAGTCCATGTGCTG 60.109 55.000 0.00 0.00 0.00 4.41
3145 3319 0.108615 GCTACGAGTCCATGTGCTGT 60.109 55.000 0.00 0.00 0.00 4.40
3146 3320 1.633561 CTACGAGTCCATGTGCTGTG 58.366 55.000 0.00 0.00 0.00 3.66
3147 3321 1.202348 CTACGAGTCCATGTGCTGTGA 59.798 52.381 0.00 0.00 0.00 3.58
3148 3322 0.392706 ACGAGTCCATGTGCTGTGAA 59.607 50.000 0.00 0.00 0.00 3.18
3149 3323 0.792640 CGAGTCCATGTGCTGTGAAC 59.207 55.000 0.00 0.00 0.00 3.18
3150 3324 1.160137 GAGTCCATGTGCTGTGAACC 58.840 55.000 0.00 0.00 0.00 3.62
3151 3325 0.767375 AGTCCATGTGCTGTGAACCT 59.233 50.000 0.00 0.00 0.00 3.50
3152 3326 0.877071 GTCCATGTGCTGTGAACCTG 59.123 55.000 0.00 0.00 0.00 4.00
3153 3327 0.473755 TCCATGTGCTGTGAACCTGT 59.526 50.000 0.00 0.00 0.00 4.00
3154 3328 0.594602 CCATGTGCTGTGAACCTGTG 59.405 55.000 0.00 0.00 0.00 3.66
3155 3329 1.596603 CATGTGCTGTGAACCTGTGA 58.403 50.000 0.00 0.00 0.00 3.58
3156 3330 1.265095 CATGTGCTGTGAACCTGTGAC 59.735 52.381 0.00 0.00 0.00 3.67
3157 3331 0.463654 TGTGCTGTGAACCTGTGACC 60.464 55.000 0.00 0.00 0.00 4.02
3158 3332 1.227527 TGCTGTGAACCTGTGACCG 60.228 57.895 0.00 0.00 0.00 4.79
3159 3333 1.069090 GCTGTGAACCTGTGACCGA 59.931 57.895 0.00 0.00 0.00 4.69
3160 3334 0.320771 GCTGTGAACCTGTGACCGAT 60.321 55.000 0.00 0.00 0.00 4.18
3161 3335 1.432514 CTGTGAACCTGTGACCGATG 58.567 55.000 0.00 0.00 0.00 3.84
3162 3336 0.756294 TGTGAACCTGTGACCGATGT 59.244 50.000 0.00 0.00 0.00 3.06
3163 3337 1.964933 TGTGAACCTGTGACCGATGTA 59.035 47.619 0.00 0.00 0.00 2.29
3164 3338 2.565391 TGTGAACCTGTGACCGATGTAT 59.435 45.455 0.00 0.00 0.00 2.29
3165 3339 3.007506 TGTGAACCTGTGACCGATGTATT 59.992 43.478 0.00 0.00 0.00 1.89
3166 3340 4.000988 GTGAACCTGTGACCGATGTATTT 58.999 43.478 0.00 0.00 0.00 1.40
3167 3341 4.000325 TGAACCTGTGACCGATGTATTTG 59.000 43.478 0.00 0.00 0.00 2.32
3168 3342 3.695830 ACCTGTGACCGATGTATTTGT 57.304 42.857 0.00 0.00 0.00 2.83
3169 3343 3.334691 ACCTGTGACCGATGTATTTGTG 58.665 45.455 0.00 0.00 0.00 3.33
3170 3344 3.007506 ACCTGTGACCGATGTATTTGTGA 59.992 43.478 0.00 0.00 0.00 3.58
3171 3345 3.618594 CCTGTGACCGATGTATTTGTGAG 59.381 47.826 0.00 0.00 0.00 3.51
3172 3346 3.595173 TGTGACCGATGTATTTGTGAGG 58.405 45.455 0.00 0.00 0.00 3.86
3173 3347 3.259625 TGTGACCGATGTATTTGTGAGGA 59.740 43.478 0.00 0.00 0.00 3.71
3174 3348 3.617263 GTGACCGATGTATTTGTGAGGAC 59.383 47.826 0.00 0.00 0.00 3.85
3175 3349 3.259625 TGACCGATGTATTTGTGAGGACA 59.740 43.478 0.00 0.00 0.00 4.02
3176 3350 3.596214 ACCGATGTATTTGTGAGGACAC 58.404 45.455 0.00 0.00 46.09 3.67
3188 3362 4.744795 GTGAGGACACAGTAGGATGAAT 57.255 45.455 0.00 0.00 45.32 2.57
3189 3363 5.091261 GTGAGGACACAGTAGGATGAATT 57.909 43.478 0.00 0.00 45.32 2.17
3190 3364 4.872691 GTGAGGACACAGTAGGATGAATTG 59.127 45.833 0.00 0.00 45.32 2.32
3191 3365 4.532126 TGAGGACACAGTAGGATGAATTGT 59.468 41.667 0.00 0.00 0.00 2.71
3192 3366 5.013079 TGAGGACACAGTAGGATGAATTGTT 59.987 40.000 0.00 0.00 0.00 2.83
3193 3367 5.491982 AGGACACAGTAGGATGAATTGTTC 58.508 41.667 0.00 0.00 0.00 3.18
3194 3368 4.636206 GGACACAGTAGGATGAATTGTTCC 59.364 45.833 0.00 0.00 0.00 3.62
3195 3369 5.241403 ACACAGTAGGATGAATTGTTCCA 57.759 39.130 6.14 0.00 34.27 3.53
3196 3370 5.819991 ACACAGTAGGATGAATTGTTCCAT 58.180 37.500 6.14 0.00 34.27 3.41
3197 3371 5.882557 ACACAGTAGGATGAATTGTTCCATC 59.117 40.000 6.14 0.00 38.66 3.51
3198 3372 5.882000 CACAGTAGGATGAATTGTTCCATCA 59.118 40.000 0.00 0.00 40.55 3.07
3199 3373 6.375174 CACAGTAGGATGAATTGTTCCATCAA 59.625 38.462 0.00 0.00 40.55 2.57
3200 3374 6.947733 ACAGTAGGATGAATTGTTCCATCAAA 59.052 34.615 0.00 0.00 40.55 2.69
3201 3375 7.616935 ACAGTAGGATGAATTGTTCCATCAAAT 59.383 33.333 0.00 0.00 40.55 2.32
3202 3376 9.123902 CAGTAGGATGAATTGTTCCATCAAATA 57.876 33.333 0.00 0.00 40.55 1.40
3203 3377 9.347240 AGTAGGATGAATTGTTCCATCAAATAG 57.653 33.333 0.00 0.00 40.55 1.73
3204 3378 9.342308 GTAGGATGAATTGTTCCATCAAATAGA 57.658 33.333 0.00 0.00 40.55 1.98
3205 3379 8.827832 AGGATGAATTGTTCCATCAAATAGAA 57.172 30.769 0.00 0.00 40.55 2.10
3206 3380 8.689972 AGGATGAATTGTTCCATCAAATAGAAC 58.310 33.333 0.00 0.00 40.55 3.01
3207 3381 8.469200 GGATGAATTGTTCCATCAAATAGAACA 58.531 33.333 0.00 0.90 45.99 3.18
3213 3387 6.414732 TGTTCCATCAAATAGAACAGTAGGG 58.585 40.000 0.90 0.00 43.60 3.53
3214 3388 6.012858 TGTTCCATCAAATAGAACAGTAGGGT 60.013 38.462 0.90 0.00 43.60 4.34
3215 3389 6.235231 TCCATCAAATAGAACAGTAGGGTC 57.765 41.667 0.00 0.00 0.00 4.46
3216 3390 5.130477 TCCATCAAATAGAACAGTAGGGTCC 59.870 44.000 0.00 0.00 0.00 4.46
3217 3391 5.104527 CCATCAAATAGAACAGTAGGGTCCA 60.105 44.000 0.00 0.00 0.00 4.02
3218 3392 6.409695 CCATCAAATAGAACAGTAGGGTCCAT 60.410 42.308 0.00 0.00 0.00 3.41
3219 3393 5.989477 TCAAATAGAACAGTAGGGTCCATG 58.011 41.667 0.00 0.00 0.00 3.66
3220 3394 5.487488 TCAAATAGAACAGTAGGGTCCATGT 59.513 40.000 0.00 0.00 0.00 3.21
3221 3395 5.615925 AATAGAACAGTAGGGTCCATGTC 57.384 43.478 0.00 0.00 0.00 3.06
3222 3396 2.188817 AGAACAGTAGGGTCCATGTCC 58.811 52.381 0.00 0.00 0.00 4.02
3223 3397 1.209747 GAACAGTAGGGTCCATGTCCC 59.790 57.143 13.43 13.43 44.90 4.46
3224 3398 0.118346 ACAGTAGGGTCCATGTCCCA 59.882 55.000 20.60 8.05 46.82 4.37
3225 3399 1.274416 ACAGTAGGGTCCATGTCCCAT 60.274 52.381 20.60 7.87 46.82 4.00
3226 3400 1.846439 CAGTAGGGTCCATGTCCCATT 59.154 52.381 20.60 7.71 46.82 3.16
3227 3401 2.242196 CAGTAGGGTCCATGTCCCATTT 59.758 50.000 20.60 7.15 46.82 2.32
3228 3402 3.458118 CAGTAGGGTCCATGTCCCATTTA 59.542 47.826 20.60 6.36 46.82 1.40
3229 3403 4.080015 CAGTAGGGTCCATGTCCCATTTAA 60.080 45.833 20.60 3.34 46.82 1.52
3230 3404 3.669939 AGGGTCCATGTCCCATTTAAG 57.330 47.619 20.60 0.00 46.82 1.85
3231 3405 2.926329 AGGGTCCATGTCCCATTTAAGT 59.074 45.455 20.60 1.01 46.82 2.24
3232 3406 3.336694 AGGGTCCATGTCCCATTTAAGTT 59.663 43.478 20.60 0.42 46.82 2.66
3233 3407 3.447229 GGGTCCATGTCCCATTTAAGTTG 59.553 47.826 15.63 0.00 44.05 3.16
3234 3408 4.340617 GGTCCATGTCCCATTTAAGTTGA 58.659 43.478 0.00 0.00 0.00 3.18
3235 3409 4.399303 GGTCCATGTCCCATTTAAGTTGAG 59.601 45.833 0.00 0.00 0.00 3.02
3236 3410 5.253330 GTCCATGTCCCATTTAAGTTGAGA 58.747 41.667 0.00 0.00 0.00 3.27
3237 3411 5.355350 GTCCATGTCCCATTTAAGTTGAGAG 59.645 44.000 0.00 0.00 0.00 3.20
3238 3412 4.641989 CCATGTCCCATTTAAGTTGAGAGG 59.358 45.833 0.00 0.00 0.00 3.69
3239 3413 4.993705 TGTCCCATTTAAGTTGAGAGGT 57.006 40.909 0.00 0.00 0.00 3.85
3240 3414 4.906618 TGTCCCATTTAAGTTGAGAGGTC 58.093 43.478 0.00 0.00 0.00 3.85
3241 3415 4.349636 TGTCCCATTTAAGTTGAGAGGTCA 59.650 41.667 0.00 0.00 0.00 4.02
3242 3416 4.938226 GTCCCATTTAAGTTGAGAGGTCAG 59.062 45.833 0.00 0.00 32.98 3.51
3243 3417 3.691609 CCCATTTAAGTTGAGAGGTCAGC 59.308 47.826 0.00 0.00 32.98 4.26
3244 3418 4.566488 CCCATTTAAGTTGAGAGGTCAGCT 60.566 45.833 0.00 0.00 45.50 4.24
3245 3419 4.633565 CCATTTAAGTTGAGAGGTCAGCTC 59.366 45.833 0.00 0.00 42.98 4.09
3246 3420 5.486526 CATTTAAGTTGAGAGGTCAGCTCT 58.513 41.667 5.94 5.94 42.98 4.09
3247 3421 5.552870 TTTAAGTTGAGAGGTCAGCTCTT 57.447 39.130 8.06 0.00 42.98 2.85
3248 3422 3.399440 AAGTTGAGAGGTCAGCTCTTG 57.601 47.619 8.06 0.00 42.98 3.02
3249 3423 1.622811 AGTTGAGAGGTCAGCTCTTGG 59.377 52.381 8.06 0.00 39.95 3.61
3250 3424 0.979665 TTGAGAGGTCAGCTCTTGGG 59.020 55.000 8.06 0.00 32.98 4.12
3251 3425 0.178921 TGAGAGGTCAGCTCTTGGGT 60.179 55.000 8.06 0.00 33.57 4.51
3252 3426 0.248843 GAGAGGTCAGCTCTTGGGTG 59.751 60.000 8.06 0.00 44.04 4.61
3253 3427 1.376553 GAGGTCAGCTCTTGGGTGC 60.377 63.158 0.00 0.00 42.57 5.01
3254 3428 2.360475 GGTCAGCTCTTGGGTGCC 60.360 66.667 0.00 0.00 42.57 5.01
3255 3429 2.360475 GTCAGCTCTTGGGTGCCC 60.360 66.667 0.00 0.00 42.57 5.36
3256 3430 4.020617 TCAGCTCTTGGGTGCCCG 62.021 66.667 2.44 0.00 42.57 6.13
3257 3431 4.335647 CAGCTCTTGGGTGCCCGT 62.336 66.667 2.44 0.00 39.42 5.28
3258 3432 3.570212 AGCTCTTGGGTGCCCGTT 61.570 61.111 2.44 0.00 39.42 4.44
3259 3433 2.597510 GCTCTTGGGTGCCCGTTT 60.598 61.111 2.44 0.00 39.42 3.60
3260 3434 2.626780 GCTCTTGGGTGCCCGTTTC 61.627 63.158 2.44 0.00 39.42 2.78
3261 3435 1.073199 CTCTTGGGTGCCCGTTTCT 59.927 57.895 2.44 0.00 39.42 2.52
3262 3436 0.955919 CTCTTGGGTGCCCGTTTCTC 60.956 60.000 2.44 0.00 39.42 2.87
3263 3437 2.281208 TTGGGTGCCCGTTTCTCG 60.281 61.111 2.44 0.00 39.42 4.04
3272 3446 2.434359 CGTTTCTCGGGCTCCACC 60.434 66.667 0.00 0.00 35.71 4.61
3273 3447 2.943978 CGTTTCTCGGGCTCCACCT 61.944 63.158 0.00 0.00 39.10 4.00
3274 3448 1.079057 GTTTCTCGGGCTCCACCTC 60.079 63.158 0.00 0.00 39.10 3.85
3275 3449 2.291043 TTTCTCGGGCTCCACCTCC 61.291 63.158 0.00 0.00 39.10 4.30
3276 3450 3.539593 TTCTCGGGCTCCACCTCCA 62.540 63.158 0.00 0.00 39.10 3.86
3277 3451 2.765807 CTCGGGCTCCACCTCCAT 60.766 66.667 0.00 0.00 39.10 3.41
3278 3452 3.083349 TCGGGCTCCACCTCCATG 61.083 66.667 0.00 0.00 39.10 3.66
3279 3453 4.181010 CGGGCTCCACCTCCATGG 62.181 72.222 4.97 4.97 41.57 3.66
3280 3454 4.512914 GGGCTCCACCTCCATGGC 62.513 72.222 6.96 0.00 39.85 4.40
3281 3455 4.512914 GGCTCCACCTCCATGGCC 62.513 72.222 6.96 0.00 39.85 5.36
3282 3456 3.731728 GCTCCACCTCCATGGCCA 61.732 66.667 8.56 8.56 39.85 5.36
3283 3457 3.089838 CTCCACCTCCATGGCCAA 58.910 61.111 10.96 0.00 39.85 4.52
3284 3458 1.383799 CTCCACCTCCATGGCCAAA 59.616 57.895 10.96 0.00 39.85 3.28
3285 3459 0.251742 CTCCACCTCCATGGCCAAAA 60.252 55.000 10.96 0.00 39.85 2.44
3286 3460 0.189574 TCCACCTCCATGGCCAAAAA 59.810 50.000 10.96 0.00 39.85 1.94
3306 3480 5.780958 AAAAGGGCAGTAGGAAGAATAGT 57.219 39.130 0.00 0.00 0.00 2.12
3307 3481 5.360649 AAAGGGCAGTAGGAAGAATAGTC 57.639 43.478 0.00 0.00 0.00 2.59
3308 3482 3.310193 AGGGCAGTAGGAAGAATAGTCC 58.690 50.000 0.00 0.00 35.17 3.85
3310 3484 3.712218 GGGCAGTAGGAAGAATAGTCCTT 59.288 47.826 0.00 0.00 43.26 3.36
3311 3485 4.202274 GGGCAGTAGGAAGAATAGTCCTTC 60.202 50.000 0.00 0.00 43.26 3.46
3312 3486 4.406003 GGCAGTAGGAAGAATAGTCCTTCA 59.594 45.833 0.00 0.00 43.26 3.02
3313 3487 5.104900 GGCAGTAGGAAGAATAGTCCTTCAA 60.105 44.000 0.00 0.00 43.26 2.69
3314 3488 6.045955 GCAGTAGGAAGAATAGTCCTTCAAG 58.954 44.000 0.00 0.00 43.26 3.02
3315 3489 6.578023 CAGTAGGAAGAATAGTCCTTCAAGG 58.422 44.000 0.00 0.00 43.26 3.61
3316 3490 6.381420 CAGTAGGAAGAATAGTCCTTCAAGGA 59.619 42.308 0.34 0.34 43.26 3.36
3351 3525 4.819630 GTGGATGAACTTGAAACAGGTGTA 59.180 41.667 0.00 0.00 0.00 2.90
3352 3526 5.049405 GTGGATGAACTTGAAACAGGTGTAG 60.049 44.000 0.00 0.00 0.00 2.74
3353 3527 4.455877 GGATGAACTTGAAACAGGTGTAGG 59.544 45.833 0.00 0.00 0.00 3.18
3354 3528 3.815809 TGAACTTGAAACAGGTGTAGGG 58.184 45.455 0.00 0.00 0.00 3.53
3355 3529 2.951229 ACTTGAAACAGGTGTAGGGG 57.049 50.000 0.00 0.00 0.00 4.79
3356 3530 1.202891 ACTTGAAACAGGTGTAGGGGC 60.203 52.381 0.00 0.00 0.00 5.80
3357 3531 0.847373 TTGAAACAGGTGTAGGGGCA 59.153 50.000 0.00 0.00 0.00 5.36
3358 3532 0.847373 TGAAACAGGTGTAGGGGCAA 59.153 50.000 0.00 0.00 0.00 4.52
3359 3533 1.244816 GAAACAGGTGTAGGGGCAAC 58.755 55.000 0.00 0.00 0.00 4.17
3360 3534 0.536460 AAACAGGTGTAGGGGCAACG 60.536 55.000 0.00 0.00 37.60 4.10
3361 3535 1.702022 AACAGGTGTAGGGGCAACGT 61.702 55.000 0.00 0.00 37.60 3.99
3449 3623 7.865706 TTTGCTAAAAATGTTGGGCTAAAAA 57.134 28.000 0.00 0.00 0.00 1.94
3458 3632 7.433708 AATGTTGGGCTAAAAATGTTTAAGC 57.566 32.000 0.00 4.88 0.00 3.09
3460 3634 5.163301 TGTTGGGCTAAAAATGTTTAAGCCA 60.163 36.000 22.73 12.65 41.00 4.75
3480 3654 0.911769 TAGTTGGTGCCCTGATGAGG 59.088 55.000 0.00 0.00 39.42 3.86
3491 3665 1.001746 CCTGATGAGGATGGATGACCG 59.998 57.143 0.00 0.00 42.93 4.79
3501 3675 3.251004 GGATGGATGACCGATAGTTTTGC 59.749 47.826 0.00 0.00 39.42 3.68
3537 3711 5.126707 GTGAAATCTTTTGAGGCCTGATGAT 59.873 40.000 12.00 3.27 0.00 2.45
3538 3712 5.718130 TGAAATCTTTTGAGGCCTGATGATT 59.282 36.000 12.00 9.83 0.00 2.57
3560 3734 9.887629 TGATTTTTAACATAGTATTCCCGTACA 57.112 29.630 0.00 0.00 0.00 2.90
3571 3745 3.420300 TTCCCGTACAAAATAGCCACA 57.580 42.857 0.00 0.00 0.00 4.17
3574 3748 2.080693 CCGTACAAAATAGCCACAGCA 58.919 47.619 0.00 0.00 43.56 4.41
3579 3753 1.089920 AAAATAGCCACAGCAGAGCG 58.910 50.000 0.00 0.00 43.56 5.03
3586 3760 1.554891 CCACAGCAGAGCGCATATCG 61.555 60.000 11.47 0.00 46.13 2.92
3591 3765 1.815613 AGCAGAGCGCATATCGATAGT 59.184 47.619 11.47 0.00 46.13 2.12
3599 3773 6.539103 AGAGCGCATATCGATAGTAGTATCAA 59.461 38.462 11.47 0.00 41.67 2.57
3609 3783 8.942338 TCGATAGTAGTATCAATTTTGCACTT 57.058 30.769 16.14 0.00 35.62 3.16
3610 3784 9.031360 TCGATAGTAGTATCAATTTTGCACTTC 57.969 33.333 16.14 0.58 35.62 3.01
3653 3827 2.585330 TCTGAAAATGGTTGCAGCTCA 58.415 42.857 0.00 0.00 39.96 4.26
3659 3833 3.423539 AATGGTTGCAGCTCAGTTAGA 57.576 42.857 0.00 0.00 0.00 2.10
3677 3851 2.674796 GAGCATCTACAACCGGACTT 57.325 50.000 9.46 0.00 0.00 3.01
3678 3852 2.271800 GAGCATCTACAACCGGACTTG 58.728 52.381 9.46 5.71 0.00 3.16
3679 3853 1.066143 AGCATCTACAACCGGACTTGG 60.066 52.381 9.46 0.00 0.00 3.61
3680 3854 1.369625 CATCTACAACCGGACTTGGC 58.630 55.000 9.46 0.00 0.00 4.52
3681 3855 0.981183 ATCTACAACCGGACTTGGCA 59.019 50.000 9.46 0.00 0.00 4.92
3682 3856 0.759959 TCTACAACCGGACTTGGCAA 59.240 50.000 9.46 0.00 0.00 4.52
3683 3857 1.141254 TCTACAACCGGACTTGGCAAA 59.859 47.619 9.46 0.00 0.00 3.68
3684 3858 2.159382 CTACAACCGGACTTGGCAAAT 58.841 47.619 9.46 0.00 0.00 2.32
3685 3859 0.958822 ACAACCGGACTTGGCAAATC 59.041 50.000 9.46 0.00 0.00 2.17
3686 3860 0.243636 CAACCGGACTTGGCAAATCC 59.756 55.000 17.46 17.46 0.00 3.01
3689 3863 2.885113 GGACTTGGCAAATCCGGC 59.115 61.111 12.45 0.00 37.80 6.13
3695 3869 4.440829 GGCAAATCCGGCCCCTCA 62.441 66.667 0.00 0.00 45.87 3.86
3696 3870 2.362375 GCAAATCCGGCCCCTCAA 60.362 61.111 0.00 0.00 0.00 3.02
3697 3871 1.981853 GCAAATCCGGCCCCTCAAA 60.982 57.895 0.00 0.00 0.00 2.69
3698 3872 1.890174 CAAATCCGGCCCCTCAAAC 59.110 57.895 0.00 0.00 0.00 2.93
3699 3873 1.677633 AAATCCGGCCCCTCAAACG 60.678 57.895 0.00 0.00 0.00 3.60
3700 3874 4.796495 ATCCGGCCCCTCAAACGC 62.796 66.667 0.00 0.00 0.00 4.84
3703 3877 4.697756 CGGCCCCTCAAACGCTCA 62.698 66.667 0.00 0.00 0.00 4.26
3704 3878 3.056328 GGCCCCTCAAACGCTCAC 61.056 66.667 0.00 0.00 0.00 3.51
3706 3880 2.742372 CCCCTCAAACGCTCACGG 60.742 66.667 0.00 0.00 46.04 4.94
3707 3881 2.342279 CCCTCAAACGCTCACGGA 59.658 61.111 0.00 0.00 46.04 4.69
3708 3882 1.301401 CCCTCAAACGCTCACGGAA 60.301 57.895 0.00 0.00 46.04 4.30
3709 3883 1.291877 CCCTCAAACGCTCACGGAAG 61.292 60.000 0.00 0.00 46.04 3.46
3710 3884 1.493311 CTCAAACGCTCACGGAAGC 59.507 57.895 1.49 1.49 46.04 3.86
3722 3896 3.567797 GGAAGCGTCCGAGCATGC 61.568 66.667 10.51 10.51 40.15 4.06
3723 3897 3.567797 GAAGCGTCCGAGCATGCC 61.568 66.667 15.66 4.99 40.15 4.40
3750 3924 4.880426 ATCCGGACGGGCCCTCAT 62.880 66.667 22.43 4.70 34.94 2.90
3751 3925 3.462056 ATCCGGACGGGCCCTCATA 62.462 63.158 22.43 6.10 34.94 2.15
3752 3926 2.748641 ATCCGGACGGGCCCTCATAT 62.749 60.000 22.43 8.04 34.94 1.78
3753 3927 2.516888 CCGGACGGGCCCTCATATT 61.517 63.158 22.43 0.00 0.00 1.28
3754 3928 1.450211 CGGACGGGCCCTCATATTT 59.550 57.895 22.43 0.00 0.00 1.40
3755 3929 0.602905 CGGACGGGCCCTCATATTTC 60.603 60.000 22.43 4.20 0.00 2.17
3756 3930 0.602905 GGACGGGCCCTCATATTTCG 60.603 60.000 22.43 5.35 0.00 3.46
3757 3931 1.227853 ACGGGCCCTCATATTTCGC 60.228 57.895 22.43 0.00 0.00 4.70
3758 3932 1.071471 CGGGCCCTCATATTTCGCT 59.929 57.895 22.43 0.00 0.00 4.93
3759 3933 0.951040 CGGGCCCTCATATTTCGCTC 60.951 60.000 22.43 0.00 0.00 5.03
3760 3934 0.398318 GGGCCCTCATATTTCGCTCT 59.602 55.000 17.04 0.00 0.00 4.09
3761 3935 1.517242 GGCCCTCATATTTCGCTCTG 58.483 55.000 0.00 0.00 0.00 3.35
3762 3936 1.517242 GCCCTCATATTTCGCTCTGG 58.483 55.000 0.00 0.00 0.00 3.86
3763 3937 1.879796 GCCCTCATATTTCGCTCTGGG 60.880 57.143 0.00 0.00 36.63 4.45
3764 3938 1.517242 CCTCATATTTCGCTCTGGGC 58.483 55.000 0.00 0.00 37.64 5.36
3765 3939 1.202687 CCTCATATTTCGCTCTGGGCA 60.203 52.381 0.00 0.00 41.91 5.36
3766 3940 2.551721 CCTCATATTTCGCTCTGGGCAT 60.552 50.000 0.00 0.00 41.91 4.40
3767 3941 2.740981 CTCATATTTCGCTCTGGGCATC 59.259 50.000 0.00 0.00 41.91 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.097954 CACACGTATGGGCGTTAGACTA 59.902 50.000 0.00 0.00 43.83 2.59
56 57 3.191371 GCAGAATTGGTTGAACGAGGATT 59.809 43.478 0.00 0.00 0.00 3.01
131 134 0.466189 GACCGGATGAATGCCCACAT 60.466 55.000 9.46 0.00 38.49 3.21
336 342 4.846779 CTTACAAGCAAAGTTAGGGCAA 57.153 40.909 0.00 0.00 0.00 4.52
521 530 3.005684 CACTACAAGAAGGCATGGCAAAA 59.994 43.478 22.64 0.00 0.00 2.44
591 601 2.829720 ACTGCAGTTGCCATGATTTCAT 59.170 40.909 15.25 0.00 41.18 2.57
657 667 1.070914 TGCCATGTCGGACAACTACAA 59.929 47.619 15.72 0.00 36.56 2.41
727 737 0.895100 GCAGTTGCCATGGTCCAGAA 60.895 55.000 14.67 0.00 34.31 3.02
806 816 2.300850 GATAACGCCTACACGCCCCA 62.301 60.000 0.00 0.00 36.19 4.96
840 850 1.734707 CGATCCCTCTTACACGCGTTT 60.735 52.381 10.22 5.90 0.00 3.60
841 851 0.179145 CGATCCCTCTTACACGCGTT 60.179 55.000 10.22 3.81 0.00 4.84
850 860 2.552093 TTTCCCTCTCGATCCCTCTT 57.448 50.000 0.00 0.00 0.00 2.85
873 884 3.959535 AATTAATGCCCACACACCTTG 57.040 42.857 0.00 0.00 0.00 3.61
975 987 1.269166 GACGCCGATAAGTGTCACAG 58.731 55.000 5.62 0.00 44.81 3.66
980 992 0.535335 ACCATGACGCCGATAAGTGT 59.465 50.000 0.00 0.00 0.00 3.55
997 1009 4.319549 CGCAGACTTGTTCCTAAAAAGACC 60.320 45.833 0.00 0.00 0.00 3.85
998 1010 4.510340 TCGCAGACTTGTTCCTAAAAAGAC 59.490 41.667 0.00 0.00 0.00 3.01
999 1011 4.699637 TCGCAGACTTGTTCCTAAAAAGA 58.300 39.130 0.00 0.00 0.00 2.52
1000 1012 5.613358 ATCGCAGACTTGTTCCTAAAAAG 57.387 39.130 0.00 0.00 42.51 2.27
1001 1013 6.385649 AAATCGCAGACTTGTTCCTAAAAA 57.614 33.333 0.00 0.00 42.51 1.94
1002 1014 6.385649 AAAATCGCAGACTTGTTCCTAAAA 57.614 33.333 0.00 0.00 42.51 1.52
1003 1015 7.681939 ATAAAATCGCAGACTTGTTCCTAAA 57.318 32.000 0.00 0.00 42.51 1.85
1004 1016 7.681939 AATAAAATCGCAGACTTGTTCCTAA 57.318 32.000 0.00 0.00 42.51 2.69
1005 1017 7.681939 AAATAAAATCGCAGACTTGTTCCTA 57.318 32.000 0.00 0.00 42.51 2.94
1006 1018 6.575162 AAATAAAATCGCAGACTTGTTCCT 57.425 33.333 0.00 0.00 42.51 3.36
1007 1019 7.381139 TCAAAAATAAAATCGCAGACTTGTTCC 59.619 33.333 0.00 0.00 42.51 3.62
1008 1020 8.280909 TCAAAAATAAAATCGCAGACTTGTTC 57.719 30.769 0.00 0.00 42.51 3.18
1009 1021 8.134895 TCTCAAAAATAAAATCGCAGACTTGTT 58.865 29.630 0.00 0.00 42.51 2.83
1010 1022 7.648142 TCTCAAAAATAAAATCGCAGACTTGT 58.352 30.769 0.00 0.00 42.51 3.16
1011 1023 8.506140 TTCTCAAAAATAAAATCGCAGACTTG 57.494 30.769 0.00 0.00 42.51 3.16
1012 1024 7.809806 CCTTCTCAAAAATAAAATCGCAGACTT 59.190 33.333 0.00 0.00 42.51 3.01
1032 1044 3.306294 CCCAAACAAAATGAGCCCTTCTC 60.306 47.826 0.00 0.00 42.23 2.87
1073 1085 2.743664 CAATCGTCTCAGTTCATGCCAA 59.256 45.455 0.00 0.00 0.00 4.52
1078 1090 2.094494 ACGAGCAATCGTCTCAGTTCAT 60.094 45.455 0.00 0.00 43.43 2.57
1079 1091 1.269723 ACGAGCAATCGTCTCAGTTCA 59.730 47.619 0.00 0.00 43.43 3.18
1083 1157 1.135546 AGTCACGAGCAATCGTCTCAG 60.136 52.381 0.00 0.00 45.26 3.35
1084 1158 0.881796 AGTCACGAGCAATCGTCTCA 59.118 50.000 0.00 0.00 45.26 3.27
1090 1164 0.179205 GCAGCAAGTCACGAGCAATC 60.179 55.000 0.00 0.00 0.00 2.67
1099 1173 2.666190 GTCGCCAGCAGCAAGTCA 60.666 61.111 0.00 0.00 44.04 3.41
1100 1174 3.782244 CGTCGCCAGCAGCAAGTC 61.782 66.667 0.00 0.00 44.04 3.01
1112 1186 4.867599 CTAGGGTTCCGCCGTCGC 62.868 72.222 0.00 0.00 38.44 5.19
1113 1187 4.867599 GCTAGGGTTCCGCCGTCG 62.868 72.222 0.00 0.00 38.44 5.12
1114 1188 2.073037 CTAGCTAGGGTTCCGCCGTC 62.073 65.000 13.32 0.00 38.44 4.79
1115 1189 2.043652 TAGCTAGGGTTCCGCCGT 60.044 61.111 0.00 0.00 38.44 5.68
1152 1226 0.669932 CCAGCAGCTCACTGTCACTC 60.670 60.000 11.38 0.00 46.30 3.51
1194 1268 1.936767 ATATGGTGGTGGCAGTGGGG 61.937 60.000 0.00 0.00 0.00 4.96
1200 1274 1.352622 GGGAGGATATGGTGGTGGCA 61.353 60.000 0.00 0.00 0.00 4.92
1399 1473 3.412408 GAAGGAGGGGGTGGGAGC 61.412 72.222 0.00 0.00 0.00 4.70
1400 1474 1.229984 AAGAAGGAGGGGGTGGGAG 60.230 63.158 0.00 0.00 0.00 4.30
1401 1475 1.229853 GAAGAAGGAGGGGGTGGGA 60.230 63.158 0.00 0.00 0.00 4.37
1402 1476 2.309504 GGAAGAAGGAGGGGGTGGG 61.310 68.421 0.00 0.00 0.00 4.61
1623 1697 1.293179 CGCCCTGATATCATCGGCA 59.707 57.895 29.52 2.83 39.70 5.69
1624 1698 1.448540 CCGCCCTGATATCATCGGC 60.449 63.158 24.49 24.49 37.65 5.54
1625 1699 1.219124 CCCGCCCTGATATCATCGG 59.781 63.158 23.39 23.39 34.89 4.18
1647 1721 0.538516 AGATATCCTCGGCGCTGTCT 60.539 55.000 17.37 7.58 0.00 3.41
1650 1724 1.080230 CCAGATATCCTCGGCGCTG 60.080 63.158 10.86 10.86 0.00 5.18
1652 1726 2.262915 CCCAGATATCCTCGGCGC 59.737 66.667 0.00 0.00 0.00 6.53
1656 1730 1.587054 GTCGGCCCAGATATCCTCG 59.413 63.158 0.00 0.00 0.00 4.63
1687 1761 1.498865 GCGTCCGCCCAACTATCATG 61.499 60.000 0.00 0.00 34.56 3.07
1699 1773 4.424566 TAGGTTGTCCGCGTCCGC 62.425 66.667 4.92 0.68 39.05 5.54
1701 1775 2.183555 CCTAGGTTGTCCGCGTCC 59.816 66.667 4.92 0.00 39.05 4.79
1788 1862 7.559335 AACCCTATATTCATCACTGCAGATA 57.441 36.000 23.35 8.07 0.00 1.98
1816 1890 2.623915 CCGACGAGAAGACCACGGT 61.624 63.158 0.00 0.00 36.38 4.83
1820 1894 0.250597 TGTCTCCGACGAGAAGACCA 60.251 55.000 16.90 7.36 46.74 4.02
1889 1969 1.362717 GCAGCCATCATGCCATCAC 59.637 57.895 0.00 0.00 37.73 3.06
1956 2045 3.495377 CCATTGTGGCAGTGTCAATTTTG 59.505 43.478 0.00 0.00 30.74 2.44
1974 2063 4.040047 TGTCCAGAGTGGTGATATCCATT 58.960 43.478 0.00 0.00 39.03 3.16
2182 2272 4.785453 GCGCCCACCCCTGAGAAG 62.785 72.222 0.00 0.00 0.00 2.85
2333 2423 0.178990 ACCTTCCCTCAACCAGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
2486 2578 9.256477 CTATGCGAATAACCATTACTAAAGACA 57.744 33.333 0.00 0.00 0.00 3.41
2487 2579 9.472361 TCTATGCGAATAACCATTACTAAAGAC 57.528 33.333 0.00 0.00 0.00 3.01
2488 2580 9.692749 CTCTATGCGAATAACCATTACTAAAGA 57.307 33.333 0.00 0.00 0.00 2.52
2489 2581 8.926710 CCTCTATGCGAATAACCATTACTAAAG 58.073 37.037 0.00 0.00 0.00 1.85
2490 2582 8.426489 ACCTCTATGCGAATAACCATTACTAAA 58.574 33.333 0.00 0.00 0.00 1.85
2492 2584 7.534723 ACCTCTATGCGAATAACCATTACTA 57.465 36.000 0.00 0.00 0.00 1.82
2530 2693 2.484264 AGCAATTCGCACCACTAGTTTC 59.516 45.455 0.00 0.00 46.13 2.78
2540 2703 1.086696 TTAGCTCCAGCAATTCGCAC 58.913 50.000 0.48 0.00 46.13 5.34
2585 2749 2.009051 CAGAAAGTATGCGGCACATGA 58.991 47.619 4.03 0.00 40.06 3.07
2630 2794 7.377766 AGCATAACAAGACGAACACAAATAT 57.622 32.000 0.00 0.00 0.00 1.28
2643 2807 5.359576 ACCAGAAAACACAAGCATAACAAGA 59.640 36.000 0.00 0.00 0.00 3.02
2681 2845 5.146010 ACCGGAATGCAAATTACAACAAT 57.854 34.783 9.46 0.00 0.00 2.71
2687 2851 3.989705 GCAAACCGGAATGCAAATTAC 57.010 42.857 24.53 0.70 42.12 1.89
2695 2859 5.347342 TGCTTAATATTGCAAACCGGAATG 58.653 37.500 9.46 7.79 36.19 2.67
2701 2865 3.115554 CGGCTGCTTAATATTGCAAACC 58.884 45.455 1.71 4.22 38.81 3.27
2721 2885 1.522668 TCTGTTCAACCAAGGCATCG 58.477 50.000 0.00 0.00 0.00 3.84
2897 3071 4.011058 ACTTGAACAAACACGTGCTTAC 57.989 40.909 17.22 5.70 0.00 2.34
2913 3087 2.680841 CAGGAACAACGACCAAACTTGA 59.319 45.455 0.00 0.00 0.00 3.02
2988 3162 2.159156 GGGTGGGAAAATATTCAACGCC 60.159 50.000 0.00 6.56 40.78 5.68
2989 3163 2.494073 TGGGTGGGAAAATATTCAACGC 59.506 45.455 0.00 0.00 37.29 4.84
3046 3220 2.412089 GCACCAACTGACTAACATCGAC 59.588 50.000 0.00 0.00 0.00 4.20
3100 3274 9.912634 CATCAACAACCAGTTTTTCATAGTATT 57.087 29.630 0.00 0.00 38.74 1.89
3101 3275 8.028938 GCATCAACAACCAGTTTTTCATAGTAT 58.971 33.333 0.00 0.00 38.74 2.12
3102 3276 7.230510 AGCATCAACAACCAGTTTTTCATAGTA 59.769 33.333 0.00 0.00 38.74 1.82
3103 3277 6.040842 AGCATCAACAACCAGTTTTTCATAGT 59.959 34.615 0.00 0.00 38.74 2.12
3104 3278 6.449698 AGCATCAACAACCAGTTTTTCATAG 58.550 36.000 0.00 0.00 38.74 2.23
3105 3279 6.403866 AGCATCAACAACCAGTTTTTCATA 57.596 33.333 0.00 0.00 38.74 2.15
3106 3280 5.280654 AGCATCAACAACCAGTTTTTCAT 57.719 34.783 0.00 0.00 38.74 2.57
3107 3281 4.734398 AGCATCAACAACCAGTTTTTCA 57.266 36.364 0.00 0.00 38.74 2.69
3108 3282 4.675114 CGTAGCATCAACAACCAGTTTTTC 59.325 41.667 0.00 0.00 38.74 2.29
3109 3283 4.336993 TCGTAGCATCAACAACCAGTTTTT 59.663 37.500 0.00 0.00 38.74 1.94
3110 3284 3.880490 TCGTAGCATCAACAACCAGTTTT 59.120 39.130 0.00 0.00 38.74 2.43
3111 3285 3.472652 TCGTAGCATCAACAACCAGTTT 58.527 40.909 0.00 0.00 38.74 2.66
3112 3286 3.067106 CTCGTAGCATCAACAACCAGTT 58.933 45.455 0.00 0.00 42.42 3.16
3113 3287 2.037251 ACTCGTAGCATCAACAACCAGT 59.963 45.455 0.00 0.00 0.00 4.00
3114 3288 2.668457 GACTCGTAGCATCAACAACCAG 59.332 50.000 0.00 0.00 0.00 4.00
3115 3289 2.611971 GGACTCGTAGCATCAACAACCA 60.612 50.000 0.00 0.00 0.00 3.67
3116 3290 2.000447 GGACTCGTAGCATCAACAACC 59.000 52.381 0.00 0.00 0.00 3.77
3117 3291 2.683968 TGGACTCGTAGCATCAACAAC 58.316 47.619 0.00 0.00 0.00 3.32
3118 3292 3.261580 CATGGACTCGTAGCATCAACAA 58.738 45.455 0.00 0.00 0.00 2.83
3119 3293 2.233676 ACATGGACTCGTAGCATCAACA 59.766 45.455 0.00 0.00 0.00 3.33
3120 3294 2.604914 CACATGGACTCGTAGCATCAAC 59.395 50.000 0.00 0.00 0.00 3.18
3121 3295 2.892374 CACATGGACTCGTAGCATCAA 58.108 47.619 0.00 0.00 0.00 2.57
3122 3296 1.471501 GCACATGGACTCGTAGCATCA 60.472 52.381 0.00 0.00 0.00 3.07
3123 3297 1.202463 AGCACATGGACTCGTAGCATC 60.202 52.381 0.00 0.00 0.00 3.91
3124 3298 0.826715 AGCACATGGACTCGTAGCAT 59.173 50.000 0.00 0.00 0.00 3.79
3125 3299 0.108662 CAGCACATGGACTCGTAGCA 60.109 55.000 0.00 0.00 0.00 3.49
3126 3300 0.108615 ACAGCACATGGACTCGTAGC 60.109 55.000 0.00 0.00 0.00 3.58
3127 3301 1.202348 TCACAGCACATGGACTCGTAG 59.798 52.381 0.00 0.00 0.00 3.51
3128 3302 1.253100 TCACAGCACATGGACTCGTA 58.747 50.000 0.00 0.00 0.00 3.43
3129 3303 0.392706 TTCACAGCACATGGACTCGT 59.607 50.000 0.00 0.00 0.00 4.18
3130 3304 0.792640 GTTCACAGCACATGGACTCG 59.207 55.000 0.00 0.00 0.00 4.18
3131 3305 1.160137 GGTTCACAGCACATGGACTC 58.840 55.000 0.00 0.00 0.00 3.36
3132 3306 0.767375 AGGTTCACAGCACATGGACT 59.233 50.000 0.00 0.00 0.00 3.85
3133 3307 0.877071 CAGGTTCACAGCACATGGAC 59.123 55.000 0.00 0.00 0.00 4.02
3134 3308 0.473755 ACAGGTTCACAGCACATGGA 59.526 50.000 0.00 0.00 30.05 3.41
3135 3309 0.594602 CACAGGTTCACAGCACATGG 59.405 55.000 0.00 0.00 30.05 3.66
3136 3310 1.265095 GTCACAGGTTCACAGCACATG 59.735 52.381 0.00 0.00 32.14 3.21
3137 3311 1.597742 GTCACAGGTTCACAGCACAT 58.402 50.000 0.00 0.00 0.00 3.21
3138 3312 0.463654 GGTCACAGGTTCACAGCACA 60.464 55.000 0.00 0.00 0.00 4.57
3139 3313 1.498865 CGGTCACAGGTTCACAGCAC 61.499 60.000 0.00 0.00 0.00 4.40
3140 3314 1.227527 CGGTCACAGGTTCACAGCA 60.228 57.895 0.00 0.00 0.00 4.41
3141 3315 0.320771 ATCGGTCACAGGTTCACAGC 60.321 55.000 0.00 0.00 0.00 4.40
3142 3316 1.270305 ACATCGGTCACAGGTTCACAG 60.270 52.381 0.00 0.00 0.00 3.66
3143 3317 0.756294 ACATCGGTCACAGGTTCACA 59.244 50.000 0.00 0.00 0.00 3.58
3144 3318 2.736144 TACATCGGTCACAGGTTCAC 57.264 50.000 0.00 0.00 0.00 3.18
3145 3319 3.973206 AATACATCGGTCACAGGTTCA 57.027 42.857 0.00 0.00 0.00 3.18
3146 3320 4.000988 ACAAATACATCGGTCACAGGTTC 58.999 43.478 0.00 0.00 0.00 3.62
3147 3321 3.751175 CACAAATACATCGGTCACAGGTT 59.249 43.478 0.00 0.00 0.00 3.50
3148 3322 3.007506 TCACAAATACATCGGTCACAGGT 59.992 43.478 0.00 0.00 0.00 4.00
3149 3323 3.595173 TCACAAATACATCGGTCACAGG 58.405 45.455 0.00 0.00 0.00 4.00
3150 3324 3.618594 CCTCACAAATACATCGGTCACAG 59.381 47.826 0.00 0.00 0.00 3.66
3151 3325 3.259625 TCCTCACAAATACATCGGTCACA 59.740 43.478 0.00 0.00 0.00 3.58
3152 3326 3.617263 GTCCTCACAAATACATCGGTCAC 59.383 47.826 0.00 0.00 0.00 3.67
3153 3327 3.259625 TGTCCTCACAAATACATCGGTCA 59.740 43.478 0.00 0.00 0.00 4.02
3154 3328 3.617263 GTGTCCTCACAAATACATCGGTC 59.383 47.826 0.00 0.00 43.37 4.79
3155 3329 3.596214 GTGTCCTCACAAATACATCGGT 58.404 45.455 0.00 0.00 43.37 4.69
3167 3341 4.744795 ATTCATCCTACTGTGTCCTCAC 57.255 45.455 0.00 0.00 44.08 3.51
3168 3342 4.532126 ACAATTCATCCTACTGTGTCCTCA 59.468 41.667 0.00 0.00 0.00 3.86
3169 3343 5.091261 ACAATTCATCCTACTGTGTCCTC 57.909 43.478 0.00 0.00 0.00 3.71
3170 3344 5.491982 GAACAATTCATCCTACTGTGTCCT 58.508 41.667 0.00 0.00 0.00 3.85
3171 3345 4.636206 GGAACAATTCATCCTACTGTGTCC 59.364 45.833 0.00 0.00 32.75 4.02
3172 3346 5.245531 TGGAACAATTCATCCTACTGTGTC 58.754 41.667 7.39 0.00 36.64 3.67
3173 3347 5.241403 TGGAACAATTCATCCTACTGTGT 57.759 39.130 7.39 0.00 36.64 3.72
3190 3364 6.415573 ACCCTACTGTTCTATTTGATGGAAC 58.584 40.000 9.41 9.41 46.92 3.62
3191 3365 6.352737 GGACCCTACTGTTCTATTTGATGGAA 60.353 42.308 0.00 0.00 0.00 3.53
3192 3366 5.130477 GGACCCTACTGTTCTATTTGATGGA 59.870 44.000 0.00 0.00 0.00 3.41
3193 3367 5.104527 TGGACCCTACTGTTCTATTTGATGG 60.105 44.000 0.00 0.00 0.00 3.51
3194 3368 5.989477 TGGACCCTACTGTTCTATTTGATG 58.011 41.667 0.00 0.00 0.00 3.07
3195 3369 6.158695 ACATGGACCCTACTGTTCTATTTGAT 59.841 38.462 0.00 0.00 0.00 2.57
3196 3370 5.487488 ACATGGACCCTACTGTTCTATTTGA 59.513 40.000 0.00 0.00 0.00 2.69
3197 3371 5.745227 ACATGGACCCTACTGTTCTATTTG 58.255 41.667 0.00 0.00 0.00 2.32
3198 3372 5.104485 GGACATGGACCCTACTGTTCTATTT 60.104 44.000 0.00 0.00 0.00 1.40
3199 3373 4.409247 GGACATGGACCCTACTGTTCTATT 59.591 45.833 0.00 0.00 0.00 1.73
3200 3374 3.967987 GGACATGGACCCTACTGTTCTAT 59.032 47.826 0.00 0.00 0.00 1.98
3201 3375 3.371965 GGACATGGACCCTACTGTTCTA 58.628 50.000 0.00 0.00 0.00 2.10
3202 3376 2.188817 GGACATGGACCCTACTGTTCT 58.811 52.381 0.00 0.00 0.00 3.01
3203 3377 1.209747 GGGACATGGACCCTACTGTTC 59.790 57.143 18.93 0.00 43.65 3.18
3204 3378 1.286248 GGGACATGGACCCTACTGTT 58.714 55.000 18.93 0.00 43.65 3.16
3205 3379 0.118346 TGGGACATGGACCCTACTGT 59.882 55.000 24.03 0.00 46.82 3.55
3206 3380 3.006061 TGGGACATGGACCCTACTG 57.994 57.895 24.03 0.00 46.82 2.74
3219 3393 4.906618 TGACCTCTCAACTTAAATGGGAC 58.093 43.478 0.00 0.00 0.00 4.46
3220 3394 4.565652 GCTGACCTCTCAACTTAAATGGGA 60.566 45.833 0.00 0.00 0.00 4.37
3221 3395 3.691609 GCTGACCTCTCAACTTAAATGGG 59.308 47.826 0.00 0.00 0.00 4.00
3222 3396 4.583871 AGCTGACCTCTCAACTTAAATGG 58.416 43.478 0.00 0.00 0.00 3.16
3223 3397 5.793026 GAGCTGACCTCTCAACTTAAATG 57.207 43.478 0.00 0.00 37.60 2.32
3235 3409 1.376553 GCACCCAAGAGCTGACCTC 60.377 63.158 0.00 0.00 41.07 3.85
3236 3410 2.753029 GCACCCAAGAGCTGACCT 59.247 61.111 0.00 0.00 0.00 3.85
3237 3411 2.360475 GGCACCCAAGAGCTGACC 60.360 66.667 0.00 0.00 0.00 4.02
3255 3429 2.434359 GGTGGAGCCCGAGAAACG 60.434 66.667 0.00 0.00 42.18 3.60
3256 3430 1.079057 GAGGTGGAGCCCGAGAAAC 60.079 63.158 0.00 0.00 38.26 2.78
3257 3431 2.291043 GGAGGTGGAGCCCGAGAAA 61.291 63.158 0.00 0.00 38.26 2.52
3258 3432 2.683933 GGAGGTGGAGCCCGAGAA 60.684 66.667 0.00 0.00 38.26 2.87
3259 3433 3.317436 ATGGAGGTGGAGCCCGAGA 62.317 63.158 0.00 0.00 38.26 4.04
3260 3434 2.765807 ATGGAGGTGGAGCCCGAG 60.766 66.667 0.00 0.00 38.26 4.63
3261 3435 3.083349 CATGGAGGTGGAGCCCGA 61.083 66.667 0.00 0.00 38.26 5.14
3262 3436 4.181010 CCATGGAGGTGGAGCCCG 62.181 72.222 5.56 0.00 42.02 6.13
3263 3437 4.512914 GCCATGGAGGTGGAGCCC 62.513 72.222 18.40 0.00 42.02 5.19
3264 3438 4.512914 GGCCATGGAGGTGGAGCC 62.513 72.222 18.40 2.22 42.02 4.70
3265 3439 2.786512 TTTGGCCATGGAGGTGGAGC 62.787 60.000 18.40 0.00 42.02 4.70
3266 3440 0.251742 TTTTGGCCATGGAGGTGGAG 60.252 55.000 18.40 0.00 42.02 3.86
3267 3441 0.189574 TTTTTGGCCATGGAGGTGGA 59.810 50.000 18.40 0.00 42.02 4.02
3268 3442 2.757313 TTTTTGGCCATGGAGGTGG 58.243 52.632 18.40 0.00 42.35 4.61
3283 3457 6.140968 ACTATTCTTCCTACTGCCCTTTTT 57.859 37.500 0.00 0.00 0.00 1.94
3284 3458 5.339282 GGACTATTCTTCCTACTGCCCTTTT 60.339 44.000 0.00 0.00 0.00 2.27
3285 3459 4.164413 GGACTATTCTTCCTACTGCCCTTT 59.836 45.833 0.00 0.00 0.00 3.11
3286 3460 3.712218 GGACTATTCTTCCTACTGCCCTT 59.288 47.826 0.00 0.00 0.00 3.95
3287 3461 3.051727 AGGACTATTCTTCCTACTGCCCT 60.052 47.826 0.00 0.00 42.06 5.19
3288 3462 3.310193 AGGACTATTCTTCCTACTGCCC 58.690 50.000 0.00 0.00 42.06 5.36
3289 3463 4.406003 TGAAGGACTATTCTTCCTACTGCC 59.594 45.833 0.00 0.00 43.14 4.85
3290 3464 5.599999 TGAAGGACTATTCTTCCTACTGC 57.400 43.478 0.00 0.00 43.14 4.40
3291 3465 6.381420 TCCTTGAAGGACTATTCTTCCTACTG 59.619 42.308 10.46 0.00 43.14 2.74
3292 3466 6.503944 TCCTTGAAGGACTATTCTTCCTACT 58.496 40.000 10.46 0.00 43.14 2.57
3293 3467 6.793505 TCCTTGAAGGACTATTCTTCCTAC 57.206 41.667 10.46 0.00 43.14 3.18
3307 3481 3.440173 ACGCATTACACAATCCTTGAAGG 59.560 43.478 4.45 4.45 36.46 3.46
3308 3482 4.406069 CACGCATTACACAATCCTTGAAG 58.594 43.478 0.00 0.00 0.00 3.02
3309 3483 3.190327 CCACGCATTACACAATCCTTGAA 59.810 43.478 0.00 0.00 0.00 2.69
3310 3484 2.746904 CCACGCATTACACAATCCTTGA 59.253 45.455 0.00 0.00 0.00 3.02
3311 3485 2.746904 TCCACGCATTACACAATCCTTG 59.253 45.455 0.00 0.00 0.00 3.61
3312 3486 3.066291 TCCACGCATTACACAATCCTT 57.934 42.857 0.00 0.00 0.00 3.36
3313 3487 2.779755 TCCACGCATTACACAATCCT 57.220 45.000 0.00 0.00 0.00 3.24
3314 3488 2.942376 TCATCCACGCATTACACAATCC 59.058 45.455 0.00 0.00 0.00 3.01
3315 3489 4.094887 AGTTCATCCACGCATTACACAATC 59.905 41.667 0.00 0.00 0.00 2.67
3316 3490 4.009675 AGTTCATCCACGCATTACACAAT 58.990 39.130 0.00 0.00 0.00 2.71
3317 3491 3.407698 AGTTCATCCACGCATTACACAA 58.592 40.909 0.00 0.00 0.00 3.33
3318 3492 3.052455 AGTTCATCCACGCATTACACA 57.948 42.857 0.00 0.00 0.00 3.72
3319 3493 3.435327 TCAAGTTCATCCACGCATTACAC 59.565 43.478 0.00 0.00 0.00 2.90
3320 3494 3.669536 TCAAGTTCATCCACGCATTACA 58.330 40.909 0.00 0.00 0.00 2.41
3321 3495 4.678509 TTCAAGTTCATCCACGCATTAC 57.321 40.909 0.00 0.00 0.00 1.89
3327 3501 2.878406 ACCTGTTTCAAGTTCATCCACG 59.122 45.455 0.00 0.00 0.00 4.94
3351 3525 1.826487 GACCAACAACGTTGCCCCT 60.826 57.895 27.61 8.46 0.00 4.79
3352 3526 1.668101 TTGACCAACAACGTTGCCCC 61.668 55.000 27.61 12.88 33.18 5.80
3353 3527 0.248866 CTTGACCAACAACGTTGCCC 60.249 55.000 27.61 12.54 34.56 5.36
3354 3528 0.248866 CCTTGACCAACAACGTTGCC 60.249 55.000 27.61 12.22 34.56 4.52
3355 3529 0.736053 TCCTTGACCAACAACGTTGC 59.264 50.000 27.61 11.74 34.56 4.17
3356 3530 1.333619 CCTCCTTGACCAACAACGTTG 59.666 52.381 26.20 26.20 34.56 4.10
3357 3531 1.210967 TCCTCCTTGACCAACAACGTT 59.789 47.619 0.00 0.00 34.56 3.99
3358 3532 0.834612 TCCTCCTTGACCAACAACGT 59.165 50.000 0.00 0.00 34.56 3.99
3359 3533 1.512926 CTCCTCCTTGACCAACAACG 58.487 55.000 0.00 0.00 34.56 4.10
3360 3534 1.202818 AGCTCCTCCTTGACCAACAAC 60.203 52.381 0.00 0.00 34.56 3.32
3361 3535 1.140312 AGCTCCTCCTTGACCAACAA 58.860 50.000 0.00 0.00 36.97 2.83
3403 3577 7.584987 CAAAAGAGGTGGACACACTAAAATAG 58.415 38.462 4.69 0.00 46.85 1.73
3480 3654 3.876914 TGCAAAACTATCGGTCATCCATC 59.123 43.478 0.00 0.00 0.00 3.51
3491 3665 8.758633 TCACTACTTCTACTTGCAAAACTATC 57.241 34.615 0.00 0.00 0.00 2.08
3560 3734 1.089920 CGCTCTGCTGTGGCTATTTT 58.910 50.000 8.79 0.00 39.59 1.82
3562 3736 1.817099 GCGCTCTGCTGTGGCTATT 60.817 57.895 0.00 0.00 41.73 1.73
3564 3738 1.675720 TATGCGCTCTGCTGTGGCTA 61.676 55.000 9.73 0.00 46.63 3.93
3571 3745 1.815613 ACTATCGATATGCGCTCTGCT 59.184 47.619 9.73 0.00 46.63 4.24
3574 3748 6.049790 TGATACTACTATCGATATGCGCTCT 58.950 40.000 9.73 0.00 40.61 4.09
3579 3753 9.907576 GCAAAATTGATACTACTATCGATATGC 57.092 33.333 5.40 4.02 38.07 3.14
3599 3773 5.979993 TGCCAATGATATGAAGTGCAAAAT 58.020 33.333 0.00 0.00 0.00 1.82
3628 3802 4.523943 AGCTGCAACCATTTTCAGAATGTA 59.476 37.500 1.02 0.00 37.40 2.29
3635 3809 2.309613 ACTGAGCTGCAACCATTTTCA 58.690 42.857 1.02 0.00 0.00 2.69
3653 3827 3.130693 GTCCGGTTGTAGATGCTCTAACT 59.869 47.826 0.00 0.00 29.58 2.24
3659 3833 1.066143 CCAAGTCCGGTTGTAGATGCT 60.066 52.381 0.00 0.00 0.00 3.79
3660 3834 1.369625 CCAAGTCCGGTTGTAGATGC 58.630 55.000 0.00 0.00 0.00 3.91
3661 3835 1.338674 TGCCAAGTCCGGTTGTAGATG 60.339 52.381 0.00 0.00 0.00 2.90
3662 3836 0.981183 TGCCAAGTCCGGTTGTAGAT 59.019 50.000 0.00 0.00 0.00 1.98
3663 3837 0.759959 TTGCCAAGTCCGGTTGTAGA 59.240 50.000 0.00 0.00 0.00 2.59
3664 3838 1.600023 TTTGCCAAGTCCGGTTGTAG 58.400 50.000 0.00 0.00 0.00 2.74
3665 3839 2.156098 GATTTGCCAAGTCCGGTTGTA 58.844 47.619 0.00 0.00 0.00 2.41
3666 3840 0.958822 GATTTGCCAAGTCCGGTTGT 59.041 50.000 0.00 0.00 0.00 3.32
3667 3841 0.243636 GGATTTGCCAAGTCCGGTTG 59.756 55.000 2.98 0.00 36.34 3.77
3668 3842 2.653557 GGATTTGCCAAGTCCGGTT 58.346 52.632 2.98 0.00 36.34 4.44
3669 3843 4.415783 GGATTTGCCAAGTCCGGT 57.584 55.556 2.98 0.00 36.34 5.28
3672 3846 2.885113 GCCGGATTTGCCAAGTCC 59.115 61.111 5.05 8.84 35.94 3.85
3679 3853 1.981853 TTTGAGGGGCCGGATTTGC 60.982 57.895 5.05 0.00 0.00 3.68
3680 3854 1.890174 GTTTGAGGGGCCGGATTTG 59.110 57.895 5.05 0.00 0.00 2.32
3681 3855 1.677633 CGTTTGAGGGGCCGGATTT 60.678 57.895 5.05 0.00 0.00 2.17
3682 3856 2.045340 CGTTTGAGGGGCCGGATT 60.045 61.111 5.05 0.00 0.00 3.01
3683 3857 4.796495 GCGTTTGAGGGGCCGGAT 62.796 66.667 5.05 0.00 0.00 4.18
3686 3860 4.697756 TGAGCGTTTGAGGGGCCG 62.698 66.667 0.00 0.00 0.00 6.13
3687 3861 3.056328 GTGAGCGTTTGAGGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
3688 3862 3.423154 CGTGAGCGTTTGAGGGGC 61.423 66.667 0.00 0.00 0.00 5.80
3689 3863 2.725203 TTCCGTGAGCGTTTGAGGGG 62.725 60.000 0.00 0.00 36.15 4.79
3690 3864 1.291877 CTTCCGTGAGCGTTTGAGGG 61.292 60.000 0.00 0.00 36.15 4.30
3691 3865 1.901650 GCTTCCGTGAGCGTTTGAGG 61.902 60.000 0.00 0.00 36.15 3.86
3692 3866 1.493311 GCTTCCGTGAGCGTTTGAG 59.507 57.895 0.00 0.00 36.15 3.02
3693 3867 3.637714 GCTTCCGTGAGCGTTTGA 58.362 55.556 0.00 0.00 36.15 2.69
3705 3879 3.567797 GCATGCTCGGACGCTTCC 61.568 66.667 11.37 0.00 38.77 3.46
3706 3880 3.567797 GGCATGCTCGGACGCTTC 61.568 66.667 18.92 0.00 0.00 3.86
3733 3907 2.748641 ATATGAGGGCCCGTCCGGAT 62.749 60.000 18.44 3.45 37.50 4.18
3734 3908 2.957902 AATATGAGGGCCCGTCCGGA 62.958 60.000 18.44 0.00 37.50 5.14
3735 3909 2.052047 AAATATGAGGGCCCGTCCGG 62.052 60.000 18.44 0.00 34.94 5.14
3736 3910 0.602905 GAAATATGAGGGCCCGTCCG 60.603 60.000 18.44 0.00 34.94 4.79
3737 3911 0.602905 CGAAATATGAGGGCCCGTCC 60.603 60.000 18.44 10.69 0.00 4.79
3738 3912 1.228657 GCGAAATATGAGGGCCCGTC 61.229 60.000 18.44 15.04 0.00 4.79
3739 3913 1.227853 GCGAAATATGAGGGCCCGT 60.228 57.895 18.44 9.55 0.00 5.28
3740 3914 0.951040 GAGCGAAATATGAGGGCCCG 60.951 60.000 18.44 1.31 0.00 6.13
3741 3915 0.398318 AGAGCGAAATATGAGGGCCC 59.602 55.000 16.46 16.46 0.00 5.80
3742 3916 1.517242 CAGAGCGAAATATGAGGGCC 58.483 55.000 0.00 0.00 0.00 5.80
3743 3917 1.517242 CCAGAGCGAAATATGAGGGC 58.483 55.000 0.00 0.00 0.00 5.19
3744 3918 1.879796 GCCCAGAGCGAAATATGAGGG 60.880 57.143 0.00 0.00 38.10 4.30
3745 3919 1.517242 GCCCAGAGCGAAATATGAGG 58.483 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.