Multiple sequence alignment - TraesCS1D01G445800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G445800 chr1D 100.000 4631 0 0 1 4631 488581803 488577173 0.000000e+00 8552.0
1 TraesCS1D01G445800 chrUn 93.008 3776 177 29 876 4631 2217431 2221139 0.000000e+00 5430.0
2 TraesCS1D01G445800 chrUn 81.651 2725 410 62 1021 3701 2240040 2237362 0.000000e+00 2180.0
3 TraesCS1D01G445800 chrUn 79.745 864 137 24 1021 1875 317659456 317660290 3.990000e-165 592.0
4 TraesCS1D01G445800 chrUn 79.745 864 137 24 1021 1875 318824850 318824016 3.990000e-165 592.0
5 TraesCS1D01G445800 chrUn 86.614 381 40 7 1 372 2216752 2217130 1.200000e-110 411.0
6 TraesCS1D01G445800 chrUn 89.552 201 16 3 610 806 2217161 2217360 2.770000e-62 250.0
7 TraesCS1D01G445800 chrUn 86.957 69 9 0 538 606 471726826 471726894 1.380000e-10 78.7
8 TraesCS1D01G445800 chr1B 82.776 2723 373 58 1020 3683 681683042 681685727 0.000000e+00 2342.0
9 TraesCS1D01G445800 chr1B 91.111 810 51 11 3839 4631 681685844 681686649 0.000000e+00 1077.0
10 TraesCS1D01G445800 chr1B 77.985 913 155 32 1236 2143 681718642 681717771 8.820000e-147 531.0
11 TraesCS1D01G445800 chr1A 90.817 1089 85 11 3143 4223 587810568 587809487 0.000000e+00 1443.0
12 TraesCS1D01G445800 chr1A 80.420 429 72 10 1738 2164 587813031 587812613 2.690000e-82 316.0
13 TraesCS1D01G445800 chr2D 86.335 322 33 9 5 322 309059824 309060138 1.600000e-89 340.0
14 TraesCS1D01G445800 chr2B 84.211 323 39 10 5 322 359177383 359177068 2.090000e-78 303.0
15 TraesCS1D01G445800 chr5D 85.207 169 16 6 150 312 150865962 150866127 1.030000e-36 165.0
16 TraesCS1D01G445800 chr4D 78.926 242 40 10 372 605 426517480 426517718 2.230000e-33 154.0
17 TraesCS1D01G445800 chr3B 77.857 140 24 6 1 138 66960547 66960413 3.840000e-11 80.5
18 TraesCS1D01G445800 chr6B 85.135 74 9 1 1063 1136 39331748 39331819 1.790000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G445800 chr1D 488577173 488581803 4630 True 8552.000000 8552 100.000000 1 4631 1 chr1D.!!$R1 4630
1 TraesCS1D01G445800 chrUn 2237362 2240040 2678 True 2180.000000 2180 81.651000 1021 3701 1 chrUn.!!$R1 2680
2 TraesCS1D01G445800 chrUn 2216752 2221139 4387 False 2030.333333 5430 89.724667 1 4631 3 chrUn.!!$F3 4630
3 TraesCS1D01G445800 chrUn 317659456 317660290 834 False 592.000000 592 79.745000 1021 1875 1 chrUn.!!$F1 854
4 TraesCS1D01G445800 chrUn 318824016 318824850 834 True 592.000000 592 79.745000 1021 1875 1 chrUn.!!$R2 854
5 TraesCS1D01G445800 chr1B 681683042 681686649 3607 False 1709.500000 2342 86.943500 1020 4631 2 chr1B.!!$F1 3611
6 TraesCS1D01G445800 chr1B 681717771 681718642 871 True 531.000000 531 77.985000 1236 2143 1 chr1B.!!$R1 907
7 TraesCS1D01G445800 chr1A 587809487 587813031 3544 True 879.500000 1443 85.618500 1738 4223 2 chr1A.!!$R1 2485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 383 0.108756 GCTGACCCTGGTTACGAGTC 60.109 60.0 0.00 0.0 0.00 3.36 F
376 385 0.178955 TGACCCTGGTTACGAGTCCA 60.179 55.0 0.00 0.0 0.00 4.02 F
428 437 0.526662 ACACTTTCCCTCGCGTCTAG 59.473 55.0 5.77 0.0 0.00 2.43 F
429 438 0.526662 CACTTTCCCTCGCGTCTAGT 59.473 55.0 5.77 0.0 0.00 2.57 F
2344 4019 0.457851 GACACCCGAGATCTGGTCTG 59.542 60.0 0.00 0.0 37.29 3.51 F
3247 4942 0.823460 ATTGTTATGCCTTTGCGGGG 59.177 50.0 0.00 0.0 41.78 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 1754 0.247736 GTCTTCAGTGGCCATCGAGT 59.752 55.000 9.72 0.0 0.0 4.18 R
2170 3845 0.322975 ATGCTGCTCGTATCCATCCC 59.677 55.000 0.00 0.0 0.0 3.85 R
2344 4019 0.737219 GACAGGTGCCATGATCTTGC 59.263 55.000 3.07 0.0 0.0 4.01 R
2435 4110 1.334869 CCGCTTAAATGGCTCATCACC 59.665 52.381 0.00 0.0 0.0 4.02 R
3271 4966 1.471684 CAGCTGAGGAGGCAAATCAAC 59.528 52.381 8.42 0.0 0.0 3.18 R
4561 6308 1.304547 CACAGACGAGGAGAGGGGT 60.305 63.158 0.00 0.0 0.0 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.533085 TTCATGTTCCCACGACGCAA 60.533 50.000 0.00 0.00 0.00 4.85
61 62 4.340381 GGATATGATGACAAAAGGCTTGCT 59.660 41.667 0.00 0.00 0.00 3.91
63 64 2.585330 TGATGACAAAAGGCTTGCTGA 58.415 42.857 14.59 0.00 0.00 4.26
83 84 3.146847 GACGTCCACCTTTGAGGATTTT 58.853 45.455 3.51 0.00 37.67 1.82
84 85 3.146847 ACGTCCACCTTTGAGGATTTTC 58.853 45.455 0.07 0.00 37.67 2.29
88 89 2.488153 CCACCTTTGAGGATTTTCGGTC 59.512 50.000 0.07 0.00 37.67 4.79
91 92 3.153919 CCTTTGAGGATTTTCGGTCCAA 58.846 45.455 0.00 0.00 37.67 3.53
102 103 5.651387 TTTTCGGTCCAATATTTGCATCA 57.349 34.783 0.00 0.00 0.00 3.07
105 106 2.687425 CGGTCCAATATTTGCATCACCA 59.313 45.455 0.00 0.00 0.00 4.17
147 153 4.771745 GGTGGGGGAGGGGGCTTA 62.772 72.222 0.00 0.00 0.00 3.09
156 162 3.596500 GGGGAGGGGGCTTAAATATATGT 59.403 47.826 0.00 0.00 0.00 2.29
164 170 6.404293 GGGGGCTTAAATATATGTATTGCGTG 60.404 42.308 0.00 0.00 31.03 5.34
185 191 6.238374 GCGTGTACATTAGGCATGTTAGAATT 60.238 38.462 0.00 0.00 44.40 2.17
190 196 9.503427 GTACATTAGGCATGTTAGAATTTGTTC 57.497 33.333 0.00 0.00 44.40 3.18
209 215 4.094294 TGTTCATATTGTTTCCTAGCACGC 59.906 41.667 0.00 0.00 0.00 5.34
214 220 3.275617 TTGTTTCCTAGCACGCCATAT 57.724 42.857 0.00 0.00 0.00 1.78
218 224 1.257743 TCCTAGCACGCCATATCTCC 58.742 55.000 0.00 0.00 0.00 3.71
221 227 1.532604 TAGCACGCCATATCTCCCGG 61.533 60.000 0.00 0.00 0.00 5.73
224 230 2.207924 ACGCCATATCTCCCGGTCC 61.208 63.158 0.00 0.00 0.00 4.46
228 234 1.435256 CCATATCTCCCGGTCCCTTT 58.565 55.000 0.00 0.00 0.00 3.11
258 264 4.883083 TGAGGATACGGTTGAGATATTGC 58.117 43.478 0.00 0.00 46.39 3.56
260 266 2.993899 GGATACGGTTGAGATATTGCCG 59.006 50.000 0.00 0.00 46.83 5.69
261 267 1.860676 TACGGTTGAGATATTGCCGC 58.139 50.000 0.00 0.00 45.53 6.53
264 270 1.230324 GGTTGAGATATTGCCGCCTC 58.770 55.000 0.00 0.00 0.00 4.70
265 271 1.202698 GGTTGAGATATTGCCGCCTCT 60.203 52.381 0.00 0.00 0.00 3.69
267 273 3.494398 GGTTGAGATATTGCCGCCTCTTA 60.494 47.826 0.00 0.00 0.00 2.10
268 274 4.319177 GTTGAGATATTGCCGCCTCTTAT 58.681 43.478 0.00 0.00 0.00 1.73
269 275 5.479306 GTTGAGATATTGCCGCCTCTTATA 58.521 41.667 0.00 0.00 0.00 0.98
270 276 5.073311 TGAGATATTGCCGCCTCTTATAC 57.927 43.478 0.00 0.00 0.00 1.47
271 277 4.106197 GAGATATTGCCGCCTCTTATACG 58.894 47.826 0.00 0.00 0.00 3.06
275 281 3.456317 CCGCCTCTTATACGGCCT 58.544 61.111 0.00 0.00 43.38 5.19
277 283 1.179814 CCGCCTCTTATACGGCCTCT 61.180 60.000 0.00 0.00 43.38 3.69
281 287 3.693085 CGCCTCTTATACGGCCTCTTATA 59.307 47.826 0.00 0.00 43.38 0.98
283 289 4.438472 GCCTCTTATACGGCCTCTTATACG 60.438 50.000 0.00 0.00 40.43 3.06
285 291 4.655963 TCTTATACGGCCTCTTATACGGT 58.344 43.478 0.00 0.00 0.00 4.83
312 321 6.446318 ACGATTAATCAAAGTGTGTTGCATT 58.554 32.000 15.57 0.00 0.00 3.56
324 333 7.467557 AGTGTGTTGCATTCTATTGTTTTTG 57.532 32.000 0.00 0.00 0.00 2.44
329 338 8.812329 GTGTTGCATTCTATTGTTTTTGTACAA 58.188 29.630 3.59 3.59 41.81 2.41
342 351 2.291209 TGTACAACTAGGTCCGGTCA 57.709 50.000 0.00 0.00 0.00 4.02
343 352 2.811410 TGTACAACTAGGTCCGGTCAT 58.189 47.619 0.00 0.00 0.00 3.06
344 353 2.494471 TGTACAACTAGGTCCGGTCATG 59.506 50.000 0.00 0.00 0.00 3.07
347 356 0.902531 AACTAGGTCCGGTCATGGTG 59.097 55.000 2.89 0.00 0.00 4.17
352 361 4.028490 TCCGGTCATGGTGGGTGC 62.028 66.667 0.00 0.00 0.00 5.01
372 381 1.153823 CGCTGACCCTGGTTACGAG 60.154 63.158 0.00 0.00 0.00 4.18
373 382 1.874345 CGCTGACCCTGGTTACGAGT 61.874 60.000 0.00 0.00 0.00 4.18
374 383 0.108756 GCTGACCCTGGTTACGAGTC 60.109 60.000 0.00 0.00 0.00 3.36
376 385 0.178955 TGACCCTGGTTACGAGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
377 386 0.971386 GACCCTGGTTACGAGTCCAA 59.029 55.000 0.00 0.00 33.06 3.53
378 387 1.345415 GACCCTGGTTACGAGTCCAAA 59.655 52.381 0.00 0.00 33.06 3.28
379 388 1.071228 ACCCTGGTTACGAGTCCAAAC 59.929 52.381 0.00 0.00 33.06 2.93
380 389 1.346722 CCCTGGTTACGAGTCCAAACT 59.653 52.381 0.00 0.00 38.88 2.66
381 390 2.413837 CCTGGTTACGAGTCCAAACTG 58.586 52.381 0.00 0.00 35.28 3.16
382 391 2.036733 CCTGGTTACGAGTCCAAACTGA 59.963 50.000 0.00 0.00 35.28 3.41
384 393 3.659786 TGGTTACGAGTCCAAACTGATG 58.340 45.455 0.00 0.00 35.28 3.07
385 394 3.000727 GGTTACGAGTCCAAACTGATGG 58.999 50.000 0.00 0.00 42.12 3.51
393 402 1.556911 TCCAAACTGATGGAGAGAGGC 59.443 52.381 3.42 0.00 44.52 4.70
394 403 1.280133 CCAAACTGATGGAGAGAGGCA 59.720 52.381 0.00 0.00 43.54 4.75
395 404 2.290514 CCAAACTGATGGAGAGAGGCAA 60.291 50.000 0.00 0.00 43.54 4.52
396 405 3.415212 CAAACTGATGGAGAGAGGCAAA 58.585 45.455 0.00 0.00 0.00 3.68
397 406 2.777832 ACTGATGGAGAGAGGCAAAC 57.222 50.000 0.00 0.00 0.00 2.93
399 408 2.373169 ACTGATGGAGAGAGGCAAACAA 59.627 45.455 0.00 0.00 0.00 2.83
400 409 3.009916 ACTGATGGAGAGAGGCAAACAAT 59.990 43.478 0.00 0.00 0.00 2.71
401 410 4.225942 ACTGATGGAGAGAGGCAAACAATA 59.774 41.667 0.00 0.00 0.00 1.90
402 411 5.104193 ACTGATGGAGAGAGGCAAACAATAT 60.104 40.000 0.00 0.00 0.00 1.28
404 413 7.083062 TGATGGAGAGAGGCAAACAATATAT 57.917 36.000 0.00 0.00 0.00 0.86
405 414 7.520798 TGATGGAGAGAGGCAAACAATATATT 58.479 34.615 0.00 0.00 0.00 1.28
406 415 7.663081 TGATGGAGAGAGGCAAACAATATATTC 59.337 37.037 0.00 0.00 0.00 1.75
407 416 6.299141 TGGAGAGAGGCAAACAATATATTCC 58.701 40.000 0.00 0.00 0.00 3.01
409 418 6.772716 GGAGAGAGGCAAACAATATATTCCAA 59.227 38.462 0.00 0.00 0.00 3.53
410 419 7.255277 GGAGAGAGGCAAACAATATATTCCAAC 60.255 40.741 0.00 0.00 0.00 3.77
411 420 7.118723 AGAGAGGCAAACAATATATTCCAACA 58.881 34.615 0.00 0.00 0.00 3.33
412 421 7.067494 AGAGAGGCAAACAATATATTCCAACAC 59.933 37.037 0.00 0.00 0.00 3.32
413 422 6.891908 AGAGGCAAACAATATATTCCAACACT 59.108 34.615 0.00 0.00 0.00 3.55
414 423 7.397192 AGAGGCAAACAATATATTCCAACACTT 59.603 33.333 0.00 0.00 0.00 3.16
415 424 7.906327 AGGCAAACAATATATTCCAACACTTT 58.094 30.769 0.00 0.00 0.00 2.66
416 425 8.034804 AGGCAAACAATATATTCCAACACTTTC 58.965 33.333 0.00 0.00 0.00 2.62
417 426 7.277760 GGCAAACAATATATTCCAACACTTTCC 59.722 37.037 0.00 0.00 0.00 3.13
418 427 7.277760 GCAAACAATATATTCCAACACTTTCCC 59.722 37.037 0.00 0.00 0.00 3.97
419 428 8.531146 CAAACAATATATTCCAACACTTTCCCT 58.469 33.333 0.00 0.00 0.00 4.20
420 429 7.881775 ACAATATATTCCAACACTTTCCCTC 57.118 36.000 0.00 0.00 0.00 4.30
421 430 6.542370 ACAATATATTCCAACACTTTCCCTCG 59.458 38.462 0.00 0.00 0.00 4.63
422 431 1.534729 ATTCCAACACTTTCCCTCGC 58.465 50.000 0.00 0.00 0.00 5.03
423 432 0.882927 TTCCAACACTTTCCCTCGCG 60.883 55.000 0.00 0.00 0.00 5.87
424 433 1.597027 CCAACACTTTCCCTCGCGT 60.597 57.895 5.77 0.00 0.00 6.01
425 434 1.566018 CCAACACTTTCCCTCGCGTC 61.566 60.000 5.77 0.00 0.00 5.19
426 435 0.600255 CAACACTTTCCCTCGCGTCT 60.600 55.000 5.77 0.00 0.00 4.18
427 436 0.963962 AACACTTTCCCTCGCGTCTA 59.036 50.000 5.77 0.00 0.00 2.59
428 437 0.526662 ACACTTTCCCTCGCGTCTAG 59.473 55.000 5.77 0.00 0.00 2.43
429 438 0.526662 CACTTTCCCTCGCGTCTAGT 59.473 55.000 5.77 0.00 0.00 2.57
430 439 0.810016 ACTTTCCCTCGCGTCTAGTC 59.190 55.000 5.77 0.00 0.00 2.59
431 440 1.096416 CTTTCCCTCGCGTCTAGTCT 58.904 55.000 5.77 0.00 0.00 3.24
432 441 1.473278 CTTTCCCTCGCGTCTAGTCTT 59.527 52.381 5.77 0.00 0.00 3.01
433 442 2.408271 TTCCCTCGCGTCTAGTCTTA 57.592 50.000 5.77 0.00 0.00 2.10
434 443 2.634815 TCCCTCGCGTCTAGTCTTAT 57.365 50.000 5.77 0.00 0.00 1.73
435 444 2.928334 TCCCTCGCGTCTAGTCTTATT 58.072 47.619 5.77 0.00 0.00 1.40
436 445 3.285484 TCCCTCGCGTCTAGTCTTATTT 58.715 45.455 5.77 0.00 0.00 1.40
437 446 4.454678 TCCCTCGCGTCTAGTCTTATTTA 58.545 43.478 5.77 0.00 0.00 1.40
438 447 4.514441 TCCCTCGCGTCTAGTCTTATTTAG 59.486 45.833 5.77 0.00 0.00 1.85
439 448 4.275443 CCCTCGCGTCTAGTCTTATTTAGT 59.725 45.833 5.77 0.00 0.00 2.24
440 449 5.221009 CCCTCGCGTCTAGTCTTATTTAGTT 60.221 44.000 5.77 0.00 0.00 2.24
441 450 5.908499 CCTCGCGTCTAGTCTTATTTAGTTC 59.092 44.000 5.77 0.00 0.00 3.01
442 451 6.238429 CCTCGCGTCTAGTCTTATTTAGTTCT 60.238 42.308 5.77 0.00 0.00 3.01
443 452 7.081526 TCGCGTCTAGTCTTATTTAGTTCTT 57.918 36.000 5.77 0.00 0.00 2.52
444 453 8.201554 TCGCGTCTAGTCTTATTTAGTTCTTA 57.798 34.615 5.77 0.00 0.00 2.10
445 454 8.834465 TCGCGTCTAGTCTTATTTAGTTCTTAT 58.166 33.333 5.77 0.00 0.00 1.73
453 462 9.193806 AGTCTTATTTAGTTCTTATACGTGGGA 57.806 33.333 0.00 0.00 0.00 4.37
454 463 9.978044 GTCTTATTTAGTTCTTATACGTGGGAT 57.022 33.333 0.00 0.00 0.00 3.85
456 465 9.976511 CTTATTTAGTTCTTATACGTGGGATCA 57.023 33.333 0.00 0.00 0.00 2.92
457 466 9.976511 TTATTTAGTTCTTATACGTGGGATCAG 57.023 33.333 0.00 0.00 0.00 2.90
458 467 7.414222 TTTAGTTCTTATACGTGGGATCAGT 57.586 36.000 0.00 0.00 0.00 3.41
459 468 5.263968 AGTTCTTATACGTGGGATCAGTG 57.736 43.478 0.00 0.00 0.00 3.66
460 469 4.710375 AGTTCTTATACGTGGGATCAGTGT 59.290 41.667 0.00 0.00 0.00 3.55
461 470 5.889853 AGTTCTTATACGTGGGATCAGTGTA 59.110 40.000 0.00 0.00 0.00 2.90
462 471 6.379133 AGTTCTTATACGTGGGATCAGTGTAA 59.621 38.462 0.00 0.00 0.00 2.41
463 472 6.387041 TCTTATACGTGGGATCAGTGTAAG 57.613 41.667 0.00 14.27 39.39 2.34
464 473 5.889853 TCTTATACGTGGGATCAGTGTAAGT 59.110 40.000 17.15 4.18 39.21 2.24
465 474 6.379133 TCTTATACGTGGGATCAGTGTAAGTT 59.621 38.462 17.15 0.00 39.21 2.66
466 475 3.040147 ACGTGGGATCAGTGTAAGTTG 57.960 47.619 0.00 0.00 0.00 3.16
467 476 1.732259 CGTGGGATCAGTGTAAGTTGC 59.268 52.381 0.00 0.00 0.00 4.17
468 477 2.778299 GTGGGATCAGTGTAAGTTGCA 58.222 47.619 0.00 0.00 0.00 4.08
469 478 2.744202 GTGGGATCAGTGTAAGTTGCAG 59.256 50.000 0.00 0.00 0.00 4.41
470 479 2.637382 TGGGATCAGTGTAAGTTGCAGA 59.363 45.455 0.00 0.00 0.00 4.26
471 480 3.072330 TGGGATCAGTGTAAGTTGCAGAA 59.928 43.478 0.00 0.00 0.00 3.02
472 481 4.263462 TGGGATCAGTGTAAGTTGCAGAAT 60.263 41.667 0.00 0.00 0.00 2.40
473 482 4.333926 GGGATCAGTGTAAGTTGCAGAATC 59.666 45.833 0.00 0.00 0.00 2.52
474 483 4.333926 GGATCAGTGTAAGTTGCAGAATCC 59.666 45.833 11.09 11.09 0.00 3.01
475 484 4.623932 TCAGTGTAAGTTGCAGAATCCT 57.376 40.909 0.00 0.00 0.00 3.24
476 485 4.973168 TCAGTGTAAGTTGCAGAATCCTT 58.027 39.130 0.00 0.00 0.00 3.36
477 486 5.376625 TCAGTGTAAGTTGCAGAATCCTTT 58.623 37.500 0.00 0.00 0.00 3.11
478 487 5.827797 TCAGTGTAAGTTGCAGAATCCTTTT 59.172 36.000 0.00 0.00 0.00 2.27
479 488 6.321181 TCAGTGTAAGTTGCAGAATCCTTTTT 59.679 34.615 0.00 0.00 0.00 1.94
480 489 7.500892 TCAGTGTAAGTTGCAGAATCCTTTTTA 59.499 33.333 0.00 0.00 0.00 1.52
481 490 8.134895 CAGTGTAAGTTGCAGAATCCTTTTTAA 58.865 33.333 0.00 0.00 0.00 1.52
482 491 8.860088 AGTGTAAGTTGCAGAATCCTTTTTAAT 58.140 29.630 0.00 0.00 0.00 1.40
487 496 8.409358 AGTTGCAGAATCCTTTTTAATACTGT 57.591 30.769 0.00 0.00 0.00 3.55
488 497 8.299570 AGTTGCAGAATCCTTTTTAATACTGTG 58.700 33.333 0.00 0.00 0.00 3.66
489 498 7.759489 TGCAGAATCCTTTTTAATACTGTGT 57.241 32.000 0.00 0.00 0.00 3.72
490 499 8.177119 TGCAGAATCCTTTTTAATACTGTGTT 57.823 30.769 0.00 0.00 0.00 3.32
491 500 8.081633 TGCAGAATCCTTTTTAATACTGTGTTG 58.918 33.333 0.00 0.00 0.00 3.33
492 501 7.542130 GCAGAATCCTTTTTAATACTGTGTTGG 59.458 37.037 0.00 0.00 0.00 3.77
493 502 8.576442 CAGAATCCTTTTTAATACTGTGTTGGT 58.424 33.333 0.00 0.00 0.00 3.67
494 503 9.802039 AGAATCCTTTTTAATACTGTGTTGGTA 57.198 29.630 0.00 0.00 0.00 3.25
496 505 7.989416 TCCTTTTTAATACTGTGTTGGTAGG 57.011 36.000 0.00 2.60 0.00 3.18
497 506 6.943718 TCCTTTTTAATACTGTGTTGGTAGGG 59.056 38.462 0.00 0.00 0.00 3.53
498 507 6.717997 CCTTTTTAATACTGTGTTGGTAGGGT 59.282 38.462 0.00 0.00 0.00 4.34
499 508 7.094506 CCTTTTTAATACTGTGTTGGTAGGGTC 60.095 40.741 0.00 0.00 0.00 4.46
500 509 6.691255 TTTAATACTGTGTTGGTAGGGTCT 57.309 37.500 0.00 0.00 0.00 3.85
501 510 4.820894 AATACTGTGTTGGTAGGGTCTC 57.179 45.455 0.00 0.00 0.00 3.36
502 511 0.966920 ACTGTGTTGGTAGGGTCTCG 59.033 55.000 0.00 0.00 0.00 4.04
503 512 1.254026 CTGTGTTGGTAGGGTCTCGA 58.746 55.000 0.00 0.00 0.00 4.04
504 513 1.616865 CTGTGTTGGTAGGGTCTCGAA 59.383 52.381 0.00 0.00 0.00 3.71
505 514 1.342174 TGTGTTGGTAGGGTCTCGAAC 59.658 52.381 0.00 0.00 0.00 3.95
506 515 1.617357 GTGTTGGTAGGGTCTCGAACT 59.383 52.381 0.00 0.00 0.00 3.01
507 516 1.891150 TGTTGGTAGGGTCTCGAACTC 59.109 52.381 0.00 0.00 0.00 3.01
508 517 1.891150 GTTGGTAGGGTCTCGAACTCA 59.109 52.381 0.00 0.00 0.00 3.41
509 518 2.297698 TGGTAGGGTCTCGAACTCAA 57.702 50.000 0.00 0.00 0.00 3.02
510 519 2.816411 TGGTAGGGTCTCGAACTCAAT 58.184 47.619 0.00 0.00 0.00 2.57
511 520 3.972133 TGGTAGGGTCTCGAACTCAATA 58.028 45.455 0.00 0.00 0.00 1.90
512 521 3.698040 TGGTAGGGTCTCGAACTCAATAC 59.302 47.826 0.00 0.00 0.00 1.89
513 522 3.952967 GGTAGGGTCTCGAACTCAATACT 59.047 47.826 0.00 0.00 0.00 2.12
514 523 4.401837 GGTAGGGTCTCGAACTCAATACTT 59.598 45.833 0.00 0.00 0.00 2.24
515 524 5.105432 GGTAGGGTCTCGAACTCAATACTTT 60.105 44.000 0.00 0.00 0.00 2.66
516 525 5.485209 AGGGTCTCGAACTCAATACTTTT 57.515 39.130 0.00 0.00 0.00 2.27
517 526 5.866207 AGGGTCTCGAACTCAATACTTTTT 58.134 37.500 0.00 0.00 0.00 1.94
518 527 5.701290 AGGGTCTCGAACTCAATACTTTTTG 59.299 40.000 0.00 0.00 0.00 2.44
519 528 5.106673 GGGTCTCGAACTCAATACTTTTTGG 60.107 44.000 0.00 0.00 0.00 3.28
520 529 5.383130 GTCTCGAACTCAATACTTTTTGGC 58.617 41.667 0.00 0.00 0.00 4.52
521 530 5.179555 GTCTCGAACTCAATACTTTTTGGCT 59.820 40.000 0.00 0.00 0.00 4.75
522 531 5.408604 TCTCGAACTCAATACTTTTTGGCTC 59.591 40.000 0.00 0.00 0.00 4.70
523 532 5.305585 TCGAACTCAATACTTTTTGGCTCT 58.694 37.500 0.00 0.00 0.00 4.09
524 533 5.179368 TCGAACTCAATACTTTTTGGCTCTG 59.821 40.000 0.00 0.00 0.00 3.35
525 534 5.179368 CGAACTCAATACTTTTTGGCTCTGA 59.821 40.000 0.00 0.00 0.00 3.27
526 535 6.128172 CGAACTCAATACTTTTTGGCTCTGAT 60.128 38.462 0.00 0.00 0.00 2.90
527 536 7.064609 CGAACTCAATACTTTTTGGCTCTGATA 59.935 37.037 0.00 0.00 0.00 2.15
528 537 7.617041 ACTCAATACTTTTTGGCTCTGATAC 57.383 36.000 0.00 0.00 0.00 2.24
529 538 7.398024 ACTCAATACTTTTTGGCTCTGATACT 58.602 34.615 0.00 0.00 0.00 2.12
530 539 8.540388 ACTCAATACTTTTTGGCTCTGATACTA 58.460 33.333 0.00 0.00 0.00 1.82
531 540 9.553064 CTCAATACTTTTTGGCTCTGATACTAT 57.447 33.333 0.00 0.00 0.00 2.12
557 566 7.593875 TTAAATTCATGCACCAACTAATTGC 57.406 32.000 0.00 0.00 34.17 3.56
558 567 5.410355 AATTCATGCACCAACTAATTGCT 57.590 34.783 0.00 0.00 37.16 3.91
559 568 4.439305 TTCATGCACCAACTAATTGCTC 57.561 40.909 0.00 0.00 37.16 4.26
560 569 2.754552 TCATGCACCAACTAATTGCTCC 59.245 45.455 0.00 0.00 37.16 4.70
561 570 2.284754 TGCACCAACTAATTGCTCCA 57.715 45.000 0.00 0.00 37.16 3.86
562 571 2.591923 TGCACCAACTAATTGCTCCAA 58.408 42.857 0.00 0.00 37.16 3.53
563 572 2.961741 TGCACCAACTAATTGCTCCAAA 59.038 40.909 0.00 0.00 37.16 3.28
564 573 3.386078 TGCACCAACTAATTGCTCCAAAA 59.614 39.130 0.00 0.00 37.16 2.44
565 574 3.989817 GCACCAACTAATTGCTCCAAAAG 59.010 43.478 0.00 0.00 34.17 2.27
566 575 4.501400 GCACCAACTAATTGCTCCAAAAGT 60.501 41.667 0.00 0.00 34.17 2.66
567 576 5.600696 CACCAACTAATTGCTCCAAAAGTT 58.399 37.500 0.00 4.30 35.51 2.66
568 577 6.048509 CACCAACTAATTGCTCCAAAAGTTT 58.951 36.000 6.42 0.00 34.05 2.66
569 578 6.018832 CACCAACTAATTGCTCCAAAAGTTTG 60.019 38.462 0.00 0.00 34.05 2.93
570 579 6.127196 ACCAACTAATTGCTCCAAAAGTTTGA 60.127 34.615 5.34 0.00 36.03 2.69
571 580 6.760770 CCAACTAATTGCTCCAAAAGTTTGAA 59.239 34.615 5.34 0.00 36.03 2.69
572 581 7.254421 CCAACTAATTGCTCCAAAAGTTTGAAC 60.254 37.037 5.34 0.00 36.03 3.18
573 582 7.112452 ACTAATTGCTCCAAAAGTTTGAACT 57.888 32.000 5.34 0.00 40.55 3.01
574 583 6.980397 ACTAATTGCTCCAAAAGTTTGAACTG 59.020 34.615 5.34 0.00 40.55 3.16
575 584 4.799564 TTGCTCCAAAAGTTTGAACTGT 57.200 36.364 5.34 0.00 40.55 3.55
576 585 4.799564 TGCTCCAAAAGTTTGAACTGTT 57.200 36.364 5.34 0.00 40.55 3.16
577 586 5.906113 TGCTCCAAAAGTTTGAACTGTTA 57.094 34.783 5.34 0.00 40.55 2.41
578 587 5.890334 TGCTCCAAAAGTTTGAACTGTTAG 58.110 37.500 5.34 0.00 40.55 2.34
579 588 5.650266 TGCTCCAAAAGTTTGAACTGTTAGA 59.350 36.000 5.34 0.00 40.55 2.10
580 589 6.183360 TGCTCCAAAAGTTTGAACTGTTAGAG 60.183 38.462 14.22 14.22 41.79 2.43
581 590 6.038271 GCTCCAAAAGTTTGAACTGTTAGAGA 59.962 38.462 19.70 8.72 41.57 3.10
582 591 7.553881 TCCAAAAGTTTGAACTGTTAGAGAG 57.446 36.000 5.34 0.00 40.55 3.20
583 592 7.335627 TCCAAAAGTTTGAACTGTTAGAGAGA 58.664 34.615 5.34 0.00 40.55 3.10
584 593 7.827236 TCCAAAAGTTTGAACTGTTAGAGAGAA 59.173 33.333 5.34 0.00 40.55 2.87
585 594 8.125448 CCAAAAGTTTGAACTGTTAGAGAGAAG 58.875 37.037 5.34 0.00 40.55 2.85
586 595 6.852858 AAGTTTGAACTGTTAGAGAGAAGC 57.147 37.500 0.00 0.00 39.66 3.86
587 596 5.918608 AGTTTGAACTGTTAGAGAGAAGCA 58.081 37.500 0.00 0.00 37.98 3.91
588 597 5.988561 AGTTTGAACTGTTAGAGAGAAGCAG 59.011 40.000 0.00 0.00 37.98 4.24
589 598 5.791336 TTGAACTGTTAGAGAGAAGCAGA 57.209 39.130 0.00 0.00 0.00 4.26
590 599 5.127693 TGAACTGTTAGAGAGAAGCAGAC 57.872 43.478 0.00 0.00 0.00 3.51
591 600 4.584743 TGAACTGTTAGAGAGAAGCAGACA 59.415 41.667 0.00 0.00 0.00 3.41
592 601 5.069119 TGAACTGTTAGAGAGAAGCAGACAA 59.931 40.000 0.00 0.00 0.00 3.18
593 602 5.736951 ACTGTTAGAGAGAAGCAGACAAT 57.263 39.130 0.00 0.00 0.00 2.71
594 603 6.842437 ACTGTTAGAGAGAAGCAGACAATA 57.158 37.500 0.00 0.00 0.00 1.90
595 604 7.416964 ACTGTTAGAGAGAAGCAGACAATAT 57.583 36.000 0.00 0.00 0.00 1.28
596 605 8.526667 ACTGTTAGAGAGAAGCAGACAATATA 57.473 34.615 0.00 0.00 0.00 0.86
597 606 9.142014 ACTGTTAGAGAGAAGCAGACAATATAT 57.858 33.333 0.00 0.00 0.00 0.86
598 607 9.979578 CTGTTAGAGAGAAGCAGACAATATATT 57.020 33.333 0.00 0.00 0.00 1.28
603 612 9.323985 AGAGAGAAGCAGACAATATATTTCAAC 57.676 33.333 0.00 0.00 0.00 3.18
604 613 9.102757 GAGAGAAGCAGACAATATATTTCAACA 57.897 33.333 0.00 0.00 0.00 3.33
605 614 8.887717 AGAGAAGCAGACAATATATTTCAACAC 58.112 33.333 0.00 0.00 0.00 3.32
606 615 8.565896 AGAAGCAGACAATATATTTCAACACA 57.434 30.769 0.00 0.00 0.00 3.72
607 616 9.013229 AGAAGCAGACAATATATTTCAACACAA 57.987 29.630 0.00 0.00 0.00 3.33
608 617 8.970691 AAGCAGACAATATATTTCAACACAAC 57.029 30.769 0.00 0.00 0.00 3.32
609 618 7.243487 AGCAGACAATATATTTCAACACAACG 58.757 34.615 0.00 0.00 0.00 4.10
610 619 7.119116 AGCAGACAATATATTTCAACACAACGA 59.881 33.333 0.00 0.00 0.00 3.85
611 620 7.216317 GCAGACAATATATTTCAACACAACGAC 59.784 37.037 0.00 0.00 0.00 4.34
612 621 7.692291 CAGACAATATATTTCAACACAACGACC 59.308 37.037 0.00 0.00 0.00 4.79
613 622 7.389330 AGACAATATATTTCAACACAACGACCA 59.611 33.333 0.00 0.00 0.00 4.02
614 623 7.877003 ACAATATATTTCAACACAACGACCAA 58.123 30.769 0.00 0.00 0.00 3.67
615 624 8.353684 ACAATATATTTCAACACAACGACCAAA 58.646 29.630 0.00 0.00 0.00 3.28
616 625 8.635124 CAATATATTTCAACACAACGACCAAAC 58.365 33.333 0.00 0.00 0.00 2.93
617 626 2.529136 TTCAACACAACGACCAAACG 57.471 45.000 0.00 0.00 39.31 3.60
626 635 2.144482 ACGACCAAACGTAGTGGAAG 57.856 50.000 21.69 16.44 45.00 3.46
633 642 4.529377 ACCAAACGTAGTGGAAGAAGGATA 59.471 41.667 21.69 0.00 45.00 2.59
655 664 9.547753 GGATAGTCAATGAAACTAGCAGATAAA 57.452 33.333 0.00 0.00 0.00 1.40
658 667 7.743104 AGTCAATGAAACTAGCAGATAAAACG 58.257 34.615 0.00 0.00 0.00 3.60
662 671 6.236017 TGAAACTAGCAGATAAAACGTTGG 57.764 37.500 0.00 0.00 0.00 3.77
749 761 6.288941 TGAAACGAGAGGTTGTCCATATAA 57.711 37.500 0.00 0.00 44.23 0.98
826 867 4.022603 CTCACTCATCTCCTCTCCTTTCA 58.977 47.826 0.00 0.00 0.00 2.69
843 884 1.534729 TCACGAGAAGCTAGCAGTCA 58.465 50.000 18.83 0.00 0.00 3.41
846 887 1.470890 ACGAGAAGCTAGCAGTCAGAC 59.529 52.381 18.83 8.42 0.00 3.51
850 891 0.814457 AAGCTAGCAGTCAGACCGAG 59.186 55.000 18.83 0.00 0.00 4.63
851 892 1.034838 AGCTAGCAGTCAGACCGAGG 61.035 60.000 18.83 0.00 0.00 4.63
852 893 2.010582 GCTAGCAGTCAGACCGAGGG 62.011 65.000 10.63 0.00 0.00 4.30
853 894 2.010582 CTAGCAGTCAGACCGAGGGC 62.011 65.000 0.00 0.00 0.00 5.19
854 895 4.803426 GCAGTCAGACCGAGGGCG 62.803 72.222 0.00 0.00 37.24 6.13
864 905 2.815647 CGAGGGCGGCTTCACTTC 60.816 66.667 20.92 0.00 0.00 3.01
865 906 2.665603 GAGGGCGGCTTCACTTCT 59.334 61.111 16.54 0.00 0.00 2.85
866 907 1.003233 GAGGGCGGCTTCACTTCTT 60.003 57.895 16.54 0.00 0.00 2.52
867 908 1.301677 GAGGGCGGCTTCACTTCTTG 61.302 60.000 16.54 0.00 0.00 3.02
868 909 2.563427 GGCGGCTTCACTTCTTGC 59.437 61.111 0.00 0.00 0.00 4.01
869 910 2.260869 GGCGGCTTCACTTCTTGCA 61.261 57.895 0.00 0.00 0.00 4.08
870 911 1.208614 GCGGCTTCACTTCTTGCAG 59.791 57.895 0.00 0.00 0.00 4.41
871 912 1.871772 CGGCTTCACTTCTTGCAGG 59.128 57.895 0.00 0.00 0.00 4.85
872 913 0.886490 CGGCTTCACTTCTTGCAGGT 60.886 55.000 0.00 0.00 0.00 4.00
873 914 0.595095 GGCTTCACTTCTTGCAGGTG 59.405 55.000 0.00 0.56 0.00 4.00
874 915 1.597742 GCTTCACTTCTTGCAGGTGA 58.402 50.000 8.91 8.91 38.07 4.02
875 916 1.534595 GCTTCACTTCTTGCAGGTGAG 59.465 52.381 11.54 7.05 40.38 3.51
876 917 2.808202 GCTTCACTTCTTGCAGGTGAGA 60.808 50.000 8.47 0.00 40.38 3.27
877 918 3.672808 CTTCACTTCTTGCAGGTGAGAT 58.327 45.455 8.47 0.00 40.38 2.75
878 919 3.325293 TCACTTCTTGCAGGTGAGATC 57.675 47.619 8.47 0.00 35.44 2.75
879 920 2.634453 TCACTTCTTGCAGGTGAGATCA 59.366 45.455 8.47 0.00 35.44 2.92
880 921 3.071457 TCACTTCTTGCAGGTGAGATCAA 59.929 43.478 8.47 0.00 35.44 2.57
881 922 4.008330 CACTTCTTGCAGGTGAGATCAAT 58.992 43.478 8.47 0.00 33.32 2.57
882 923 4.094590 CACTTCTTGCAGGTGAGATCAATC 59.905 45.833 8.47 0.00 33.32 2.67
883 924 2.897436 TCTTGCAGGTGAGATCAATCG 58.103 47.619 0.00 0.00 0.00 3.34
888 929 2.897436 CAGGTGAGATCAATCGCTTGA 58.103 47.619 3.88 3.88 45.15 3.02
897 938 4.451435 AGATCAATCGCTTGACTGCATATG 59.549 41.667 3.42 0.00 43.92 1.78
926 967 8.455903 TCATCATCTTCTTGTTCTGTTTTTCT 57.544 30.769 0.00 0.00 0.00 2.52
927 968 8.562892 TCATCATCTTCTTGTTCTGTTTTTCTC 58.437 33.333 0.00 0.00 0.00 2.87
928 969 6.948353 TCATCTTCTTGTTCTGTTTTTCTCG 58.052 36.000 0.00 0.00 0.00 4.04
929 970 6.538742 TCATCTTCTTGTTCTGTTTTTCTCGT 59.461 34.615 0.00 0.00 0.00 4.18
930 971 7.709182 TCATCTTCTTGTTCTGTTTTTCTCGTA 59.291 33.333 0.00 0.00 0.00 3.43
931 972 7.230466 TCTTCTTGTTCTGTTTTTCTCGTAC 57.770 36.000 0.00 0.00 0.00 3.67
932 973 7.039882 TCTTCTTGTTCTGTTTTTCTCGTACT 58.960 34.615 0.00 0.00 0.00 2.73
933 974 8.192774 TCTTCTTGTTCTGTTTTTCTCGTACTA 58.807 33.333 0.00 0.00 0.00 1.82
934 975 7.925703 TCTTGTTCTGTTTTTCTCGTACTAG 57.074 36.000 0.00 0.00 0.00 2.57
935 976 6.420008 TCTTGTTCTGTTTTTCTCGTACTAGC 59.580 38.462 0.00 0.00 0.00 3.42
936 977 5.593968 TGTTCTGTTTTTCTCGTACTAGCA 58.406 37.500 0.00 0.00 0.00 3.49
937 978 5.461078 TGTTCTGTTTTTCTCGTACTAGCAC 59.539 40.000 0.00 0.00 0.00 4.40
977 1018 1.134367 GTCGGATTGACCTGATCGACA 59.866 52.381 8.49 0.00 42.04 4.35
979 1020 5.035394 GTCGGATTGACCTGATCGACAGA 62.035 52.174 14.19 0.00 45.43 3.41
1192 1233 3.252458 CCTTGTACAAACAGCTGGGTTAC 59.748 47.826 19.93 13.31 36.83 2.50
1204 1245 3.011934 AGCTGGGTTACTACTCCTCTCTT 59.988 47.826 0.00 0.00 0.00 2.85
1206 1247 5.103430 AGCTGGGTTACTACTCCTCTCTTAT 60.103 44.000 0.00 0.00 0.00 1.73
1254 1296 8.201554 TGTACATATCTGACTCAAAAAGATGC 57.798 34.615 0.00 0.00 32.92 3.91
1337 1379 1.531739 GGTTCTTGGCGGCCATTTCA 61.532 55.000 24.49 6.76 31.53 2.69
1358 1400 1.745232 TTGGCATTGTACCCGATGAC 58.255 50.000 0.00 3.31 40.51 3.06
1406 1470 9.230932 CAAGATTTGTTGTCTTTTCTTCTCTTC 57.769 33.333 0.00 0.00 33.82 2.87
1516 1580 2.363359 TCATGTCCGGAGTGATCTCATG 59.637 50.000 18.22 18.22 42.05 3.07
1584 1648 2.372264 CATCAAACCTAGCACCAGCAT 58.628 47.619 0.00 0.00 45.49 3.79
1641 1705 2.739379 GTGCTCTTCTGCTACAGGTTTC 59.261 50.000 0.00 0.00 31.51 2.78
1686 1750 5.848406 AGTTTTCTAAGACTCTGGTCACTG 58.152 41.667 0.00 0.00 44.36 3.66
1687 1751 5.598830 AGTTTTCTAAGACTCTGGTCACTGA 59.401 40.000 0.00 0.00 44.36 3.41
1688 1752 6.098409 AGTTTTCTAAGACTCTGGTCACTGAA 59.902 38.462 0.00 0.00 44.36 3.02
1689 1753 5.713792 TTCTAAGACTCTGGTCACTGAAG 57.286 43.478 0.00 0.00 44.36 3.02
1690 1754 4.986783 TCTAAGACTCTGGTCACTGAAGA 58.013 43.478 0.00 0.00 44.36 2.87
1691 1755 4.762765 TCTAAGACTCTGGTCACTGAAGAC 59.237 45.833 0.00 0.00 44.36 3.01
1692 1756 3.237268 AGACTCTGGTCACTGAAGACT 57.763 47.619 0.00 0.00 44.36 3.24
1693 1757 3.153919 AGACTCTGGTCACTGAAGACTC 58.846 50.000 0.00 0.00 44.36 3.36
1694 1758 1.883275 ACTCTGGTCACTGAAGACTCG 59.117 52.381 0.00 0.00 38.57 4.18
1695 1759 2.155279 CTCTGGTCACTGAAGACTCGA 58.845 52.381 0.00 0.00 38.57 4.04
1696 1760 2.752354 CTCTGGTCACTGAAGACTCGAT 59.248 50.000 0.00 0.00 38.57 3.59
1806 1870 0.680061 AGGAAGGAACCTCGTCACAC 59.320 55.000 0.00 0.00 34.98 3.82
2168 3843 1.269958 CCGAGCCATATCCCAGATCA 58.730 55.000 0.00 0.00 0.00 2.92
2170 3845 2.354503 CCGAGCCATATCCCAGATCAAG 60.355 54.545 0.00 0.00 0.00 3.02
2216 3891 2.202570 CAGGTTACTCGTCGGCGG 60.203 66.667 10.62 2.38 38.89 6.13
2344 4019 0.457851 GACACCCGAGATCTGGTCTG 59.542 60.000 0.00 0.00 37.29 3.51
2435 4110 1.469308 GTAGTAGGCCGATCGATGGAG 59.531 57.143 18.66 0.00 0.00 3.86
2525 4200 1.804151 GCAGAAACAATCGGCACACTA 59.196 47.619 0.00 0.00 46.93 2.74
2527 4202 3.067106 CAGAAACAATCGGCACACTACT 58.933 45.455 0.00 0.00 0.00 2.57
2528 4203 4.242475 CAGAAACAATCGGCACACTACTA 58.758 43.478 0.00 0.00 0.00 1.82
2589 4264 3.733077 GCAAAGAGCCATTTGGATTCTCG 60.733 47.826 11.86 0.11 39.94 4.04
2595 4270 1.062587 CCATTTGGATTCTCGCACGAC 59.937 52.381 0.00 0.00 37.39 4.34
2602 4277 3.568430 TGGATTCTCGCACGACTATACAT 59.432 43.478 0.00 0.00 0.00 2.29
2651 4326 6.927381 CAGCTGGTTTTCATCTTCTCAAAAAT 59.073 34.615 5.57 0.00 0.00 1.82
2682 4357 2.354510 TGTTGCGGAGAAGACTTTGTTG 59.645 45.455 0.00 0.00 0.00 3.33
2707 4382 3.838120 TGCTAGTCAACATCTTCACTCG 58.162 45.455 0.00 0.00 0.00 4.18
2797 4472 2.477863 GCGGAATTAGTGATGCCACAAC 60.478 50.000 0.00 0.00 45.54 3.32
3028 4722 6.964464 TCAAATACACTTGATTTAGGGCCTA 58.036 36.000 9.81 9.81 30.31 3.93
3029 4723 7.582719 TCAAATACACTTGATTTAGGGCCTAT 58.417 34.615 15.37 0.09 30.31 2.57
3089 4784 5.572896 CGCAGGTGATTGGAAAAATACTTTC 59.427 40.000 0.00 0.00 0.00 2.62
3247 4942 0.823460 ATTGTTATGCCTTTGCGGGG 59.177 50.000 0.00 0.00 41.78 5.73
3262 4957 3.116531 GGGCGGTCTACAACACGC 61.117 66.667 0.00 0.00 42.88 5.34
3438 5136 1.679153 GGCGGGTTCTTCAAACAAGAA 59.321 47.619 0.00 0.00 34.20 2.52
3651 5352 6.211587 TGATTTGCCATCAAGGTTTAGATG 57.788 37.500 0.00 0.00 40.94 2.90
3697 5408 9.304731 GTTGGTTGTGTAACGTATGAAGATATA 57.695 33.333 0.00 0.00 42.39 0.86
3723 5434 8.203485 ACATTGTCAATTTTATTCACTGGTGTT 58.797 29.630 0.00 0.00 0.00 3.32
3744 5455 9.132521 GGTGTTTGAAGATTATATATGCATTGC 57.867 33.333 3.54 0.46 0.00 3.56
3781 5492 6.716173 TCATTGTCCTTGTCATGAGAAAATGA 59.284 34.615 19.02 19.02 34.16 2.57
3785 5496 6.072342 TGTCCTTGTCATGAGAAAATGATGTG 60.072 38.462 6.75 0.00 38.76 3.21
3794 5505 7.823799 TCATGAGAAAATGATGTGCAAGTACTA 59.176 33.333 0.00 0.00 31.58 1.82
3807 5522 7.847487 TGTGCAAGTACTATTCGTATTTATGC 58.153 34.615 0.00 0.00 0.00 3.14
3818 5533 5.657470 TCGTATTTATGCTTGTGATCAGC 57.343 39.130 0.00 0.00 0.00 4.26
3842 5569 4.925068 AGACAAAATGTTCTGTGCTGTTC 58.075 39.130 0.00 0.00 0.00 3.18
3846 5573 3.976793 AATGTTCTGTGCTGTTCTGTG 57.023 42.857 0.00 0.00 0.00 3.66
3847 5574 2.401583 TGTTCTGTGCTGTTCTGTGT 57.598 45.000 0.00 0.00 0.00 3.72
3860 5587 5.346281 GCTGTTCTGTGTCAGTGTATCTTAC 59.654 44.000 0.00 0.00 34.57 2.34
3869 5596 7.145985 GTGTCAGTGTATCTTACTCAGAAACA 58.854 38.462 0.00 0.00 34.16 2.83
3901 5628 0.179092 GCTTTGCATTCCCAGATGGC 60.179 55.000 0.00 0.00 0.00 4.40
3917 5646 2.282701 TGGCTATCACCGTTTACGTC 57.717 50.000 0.00 0.00 37.74 4.34
3996 5740 7.413438 CCACTAAAATTCTACATCAGCACAGAC 60.413 40.741 0.00 0.00 0.00 3.51
4030 5776 9.443283 CACTCTTATCAAAGTCAAAAACAGAAG 57.557 33.333 0.00 0.00 34.13 2.85
4061 5807 2.224314 GCTACAAACACTTGCAGAGGAC 59.776 50.000 0.00 0.00 35.84 3.85
4179 5926 2.429930 CTCCACCCGCTTGGACAA 59.570 61.111 0.00 0.00 41.00 3.18
4186 5933 1.376037 CCGCTTGGACAACTCCTCC 60.376 63.158 0.00 0.00 37.48 4.30
4261 6008 0.809385 GGAACGACTCGATGAGGTCA 59.191 55.000 5.20 0.00 33.35 4.02
4285 6032 2.930562 AGGAAGTTGCGGGCCTCT 60.931 61.111 0.84 0.00 0.00 3.69
4309 6056 2.800544 CGTCTTCTTGTCGTTGTGGAAT 59.199 45.455 0.00 0.00 0.00 3.01
4432 6179 1.451504 GATGATGCCGATGACCCCA 59.548 57.895 0.00 0.00 0.00 4.96
4480 6227 2.038813 TGGCCCATCTCCGAGTCA 59.961 61.111 0.00 0.00 0.00 3.41
4561 6308 2.363795 CCGACCACCTCCAGCCTA 60.364 66.667 0.00 0.00 0.00 3.93
4609 6356 2.475187 GCTATTCTTGCGCACAGTGAAG 60.475 50.000 11.12 3.27 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.816018 ATTGTTGCGTCGTGGGAACA 60.816 50.000 10.34 10.34 44.84 3.18
29 30 7.389803 TTTTGTCATCATATCCGTGAATTGT 57.610 32.000 0.00 0.00 0.00 2.71
61 62 1.348064 ATCCTCAAAGGTGGACGTCA 58.652 50.000 18.91 0.27 39.36 4.35
63 64 2.951229 AAATCCTCAAAGGTGGACGT 57.049 45.000 0.00 0.00 39.36 4.34
83 84 2.948979 GGTGATGCAAATATTGGACCGA 59.051 45.455 0.00 0.00 32.41 4.69
84 85 2.687425 TGGTGATGCAAATATTGGACCG 59.313 45.455 0.00 0.00 32.41 4.79
88 89 4.260907 CGAGTCTGGTGATGCAAATATTGG 60.261 45.833 0.00 0.00 0.00 3.16
91 92 4.122776 GTCGAGTCTGGTGATGCAAATAT 58.877 43.478 0.00 0.00 0.00 1.28
164 170 9.503427 GAACAAATTCTAACATGCCTAATGTAC 57.497 33.333 0.00 0.00 38.99 2.90
185 191 5.391523 GCGTGCTAGGAAACAATATGAACAA 60.392 40.000 0.00 0.00 0.00 2.83
190 196 2.942376 TGGCGTGCTAGGAAACAATATG 59.058 45.455 0.00 0.00 0.00 1.78
196 202 3.060602 GAGATATGGCGTGCTAGGAAAC 58.939 50.000 0.00 0.00 0.00 2.78
209 215 1.348036 GAAAGGGACCGGGAGATATGG 59.652 57.143 6.32 0.00 0.00 2.74
214 220 0.473117 ACAAGAAAGGGACCGGGAGA 60.473 55.000 6.32 0.00 0.00 3.71
218 224 3.270877 CTCAATACAAGAAAGGGACCGG 58.729 50.000 0.00 0.00 0.00 5.28
221 227 5.753921 CGTATCCTCAATACAAGAAAGGGAC 59.246 44.000 0.00 0.00 40.34 4.46
224 230 5.671493 ACCGTATCCTCAATACAAGAAAGG 58.329 41.667 0.00 0.00 40.34 3.11
228 234 5.655090 TCTCAACCGTATCCTCAATACAAGA 59.345 40.000 0.00 0.00 40.34 3.02
261 267 4.096081 CCGTATAAGAGGCCGTATAAGAGG 59.904 50.000 14.27 10.40 0.00 3.69
264 270 6.690194 ATACCGTATAAGAGGCCGTATAAG 57.310 41.667 0.00 3.85 0.00 1.73
265 271 6.257849 CGTATACCGTATAAGAGGCCGTATAA 59.742 42.308 0.00 0.00 0.00 0.98
267 273 4.572389 CGTATACCGTATAAGAGGCCGTAT 59.428 45.833 0.00 0.00 0.00 3.06
268 274 3.932710 CGTATACCGTATAAGAGGCCGTA 59.067 47.826 0.00 0.00 0.00 4.02
269 275 2.744202 CGTATACCGTATAAGAGGCCGT 59.256 50.000 0.00 0.00 0.00 5.68
270 276 3.002791 TCGTATACCGTATAAGAGGCCG 58.997 50.000 9.38 4.52 37.94 6.13
271 277 5.573337 AATCGTATACCGTATAAGAGGCC 57.427 43.478 16.18 0.00 33.74 5.19
272 278 8.400947 TGATTAATCGTATACCGTATAAGAGGC 58.599 37.037 16.18 7.25 33.74 4.70
281 287 7.037438 ACACACTTTGATTAATCGTATACCGT 58.963 34.615 10.80 1.26 37.94 4.83
283 289 7.638683 GCAACACACTTTGATTAATCGTATACC 59.361 37.037 10.80 0.00 0.00 2.73
285 291 8.257830 TGCAACACACTTTGATTAATCGTATA 57.742 30.769 10.80 0.00 0.00 1.47
312 321 7.385752 CGGACCTAGTTGTACAAAAACAATAGA 59.614 37.037 10.51 0.00 41.18 1.98
324 333 2.159142 CCATGACCGGACCTAGTTGTAC 60.159 54.545 9.46 0.00 0.00 2.90
329 338 0.976073 CCACCATGACCGGACCTAGT 60.976 60.000 9.46 0.00 0.00 2.57
352 361 2.267961 GTAACCAGGGTCAGCGGG 59.732 66.667 0.00 0.00 0.00 6.13
359 368 1.071228 GTTTGGACTCGTAACCAGGGT 59.929 52.381 0.00 0.00 37.48 4.34
372 381 2.679349 GCCTCTCTCCATCAGTTTGGAC 60.679 54.545 0.00 0.00 40.90 4.02
373 382 1.556911 GCCTCTCTCCATCAGTTTGGA 59.443 52.381 0.00 0.00 43.56 3.53
374 383 1.280133 TGCCTCTCTCCATCAGTTTGG 59.720 52.381 0.00 0.00 38.18 3.28
376 385 3.181440 TGTTTGCCTCTCTCCATCAGTTT 60.181 43.478 0.00 0.00 0.00 2.66
377 386 2.373169 TGTTTGCCTCTCTCCATCAGTT 59.627 45.455 0.00 0.00 0.00 3.16
378 387 1.980765 TGTTTGCCTCTCTCCATCAGT 59.019 47.619 0.00 0.00 0.00 3.41
379 388 2.775911 TGTTTGCCTCTCTCCATCAG 57.224 50.000 0.00 0.00 0.00 2.90
380 389 3.726557 ATTGTTTGCCTCTCTCCATCA 57.273 42.857 0.00 0.00 0.00 3.07
381 390 7.120432 GGAATATATTGTTTGCCTCTCTCCATC 59.880 40.741 1.78 0.00 0.00 3.51
382 391 6.944862 GGAATATATTGTTTGCCTCTCTCCAT 59.055 38.462 1.78 0.00 0.00 3.41
384 393 6.299141 TGGAATATATTGTTTGCCTCTCTCC 58.701 40.000 1.78 0.00 0.00 3.71
385 394 7.283127 TGTTGGAATATATTGTTTGCCTCTCTC 59.717 37.037 1.78 0.00 0.00 3.20
388 397 6.891908 AGTGTTGGAATATATTGTTTGCCTCT 59.108 34.615 1.78 0.00 0.00 3.69
389 398 7.100458 AGTGTTGGAATATATTGTTTGCCTC 57.900 36.000 1.78 0.00 0.00 4.70
390 399 7.480760 AAGTGTTGGAATATATTGTTTGCCT 57.519 32.000 1.78 0.00 0.00 4.75
391 400 7.277760 GGAAAGTGTTGGAATATATTGTTTGCC 59.722 37.037 1.78 0.00 0.00 4.52
392 401 7.277760 GGGAAAGTGTTGGAATATATTGTTTGC 59.722 37.037 1.78 0.00 0.00 3.68
393 402 8.531146 AGGGAAAGTGTTGGAATATATTGTTTG 58.469 33.333 1.78 0.00 0.00 2.93
394 403 8.664669 AGGGAAAGTGTTGGAATATATTGTTT 57.335 30.769 1.78 0.00 0.00 2.83
395 404 7.067008 CGAGGGAAAGTGTTGGAATATATTGTT 59.933 37.037 1.78 0.00 0.00 2.83
396 405 6.542370 CGAGGGAAAGTGTTGGAATATATTGT 59.458 38.462 1.78 0.00 0.00 2.71
397 406 6.513393 GCGAGGGAAAGTGTTGGAATATATTG 60.513 42.308 1.78 0.00 0.00 1.90
399 408 5.063880 GCGAGGGAAAGTGTTGGAATATAT 58.936 41.667 0.00 0.00 0.00 0.86
400 409 4.448210 GCGAGGGAAAGTGTTGGAATATA 58.552 43.478 0.00 0.00 0.00 0.86
401 410 3.279434 GCGAGGGAAAGTGTTGGAATAT 58.721 45.455 0.00 0.00 0.00 1.28
402 411 2.706890 GCGAGGGAAAGTGTTGGAATA 58.293 47.619 0.00 0.00 0.00 1.75
404 413 0.882927 CGCGAGGGAAAGTGTTGGAA 60.883 55.000 0.00 0.00 0.00 3.53
405 414 1.301401 CGCGAGGGAAAGTGTTGGA 60.301 57.895 0.00 0.00 0.00 3.53
406 415 1.566018 GACGCGAGGGAAAGTGTTGG 61.566 60.000 15.93 0.00 0.00 3.77
407 416 0.600255 AGACGCGAGGGAAAGTGTTG 60.600 55.000 15.93 0.00 0.00 3.33
409 418 0.526662 CTAGACGCGAGGGAAAGTGT 59.473 55.000 15.93 0.00 0.00 3.55
410 419 0.526662 ACTAGACGCGAGGGAAAGTG 59.473 55.000 15.93 0.00 0.00 3.16
411 420 0.810016 GACTAGACGCGAGGGAAAGT 59.190 55.000 15.93 7.07 0.00 2.66
412 421 1.096416 AGACTAGACGCGAGGGAAAG 58.904 55.000 15.93 3.54 0.00 2.62
413 422 1.542492 AAGACTAGACGCGAGGGAAA 58.458 50.000 15.93 0.00 0.00 3.13
414 423 2.408271 TAAGACTAGACGCGAGGGAA 57.592 50.000 15.93 0.00 0.00 3.97
415 424 2.634815 ATAAGACTAGACGCGAGGGA 57.365 50.000 15.93 0.00 0.00 4.20
416 425 3.712091 AAATAAGACTAGACGCGAGGG 57.288 47.619 15.93 2.01 0.00 4.30
417 426 5.421212 ACTAAATAAGACTAGACGCGAGG 57.579 43.478 15.93 1.61 0.00 4.63
418 427 6.717413 AGAACTAAATAAGACTAGACGCGAG 58.283 40.000 15.93 1.31 0.00 5.03
419 428 6.674694 AGAACTAAATAAGACTAGACGCGA 57.325 37.500 15.93 0.00 0.00 5.87
427 436 9.193806 TCCCACGTATAAGAACTAAATAAGACT 57.806 33.333 0.00 0.00 0.00 3.24
428 437 9.978044 ATCCCACGTATAAGAACTAAATAAGAC 57.022 33.333 0.00 0.00 0.00 3.01
430 439 9.976511 TGATCCCACGTATAAGAACTAAATAAG 57.023 33.333 0.00 0.00 0.00 1.73
431 440 9.976511 CTGATCCCACGTATAAGAACTAAATAA 57.023 33.333 0.00 0.00 0.00 1.40
432 441 9.139734 ACTGATCCCACGTATAAGAACTAAATA 57.860 33.333 0.00 0.00 0.00 1.40
433 442 7.926555 CACTGATCCCACGTATAAGAACTAAAT 59.073 37.037 0.00 0.00 0.00 1.40
434 443 7.093640 ACACTGATCCCACGTATAAGAACTAAA 60.094 37.037 0.00 0.00 0.00 1.85
435 444 6.379133 ACACTGATCCCACGTATAAGAACTAA 59.621 38.462 0.00 0.00 0.00 2.24
436 445 5.889853 ACACTGATCCCACGTATAAGAACTA 59.110 40.000 0.00 0.00 0.00 2.24
437 446 4.710375 ACACTGATCCCACGTATAAGAACT 59.290 41.667 0.00 0.00 0.00 3.01
438 447 5.007385 ACACTGATCCCACGTATAAGAAC 57.993 43.478 0.00 0.00 0.00 3.01
439 448 6.379133 ACTTACACTGATCCCACGTATAAGAA 59.621 38.462 0.00 0.00 0.00 2.52
440 449 5.889853 ACTTACACTGATCCCACGTATAAGA 59.110 40.000 0.00 0.00 0.00 2.10
441 450 6.145338 ACTTACACTGATCCCACGTATAAG 57.855 41.667 0.00 0.00 0.00 1.73
442 451 6.334989 CAACTTACACTGATCCCACGTATAA 58.665 40.000 0.00 0.00 0.00 0.98
443 452 5.680408 GCAACTTACACTGATCCCACGTATA 60.680 44.000 0.00 0.00 0.00 1.47
444 453 4.755411 CAACTTACACTGATCCCACGTAT 58.245 43.478 0.00 0.00 0.00 3.06
445 454 3.615592 GCAACTTACACTGATCCCACGTA 60.616 47.826 0.00 0.00 0.00 3.57
446 455 2.870435 GCAACTTACACTGATCCCACGT 60.870 50.000 0.00 0.00 0.00 4.49
447 456 1.732259 GCAACTTACACTGATCCCACG 59.268 52.381 0.00 0.00 0.00 4.94
448 457 2.744202 CTGCAACTTACACTGATCCCAC 59.256 50.000 0.00 0.00 0.00 4.61
449 458 2.637382 TCTGCAACTTACACTGATCCCA 59.363 45.455 0.00 0.00 0.00 4.37
450 459 3.334583 TCTGCAACTTACACTGATCCC 57.665 47.619 0.00 0.00 0.00 3.85
451 460 4.333926 GGATTCTGCAACTTACACTGATCC 59.666 45.833 0.00 0.00 0.00 3.36
452 461 5.181748 AGGATTCTGCAACTTACACTGATC 58.818 41.667 0.00 0.00 0.00 2.92
453 462 5.171339 AGGATTCTGCAACTTACACTGAT 57.829 39.130 0.00 0.00 0.00 2.90
454 463 4.623932 AGGATTCTGCAACTTACACTGA 57.376 40.909 0.00 0.00 0.00 3.41
455 464 5.695851 AAAGGATTCTGCAACTTACACTG 57.304 39.130 0.00 0.00 0.00 3.66
456 465 6.715347 AAAAAGGATTCTGCAACTTACACT 57.285 33.333 0.00 0.00 0.00 3.55
461 470 8.860088 ACAGTATTAAAAAGGATTCTGCAACTT 58.140 29.630 0.00 0.00 0.00 2.66
462 471 8.299570 CACAGTATTAAAAAGGATTCTGCAACT 58.700 33.333 0.00 0.00 0.00 3.16
463 472 8.082242 ACACAGTATTAAAAAGGATTCTGCAAC 58.918 33.333 0.00 0.00 0.00 4.17
464 473 8.177119 ACACAGTATTAAAAAGGATTCTGCAA 57.823 30.769 0.00 0.00 0.00 4.08
465 474 7.759489 ACACAGTATTAAAAAGGATTCTGCA 57.241 32.000 0.00 0.00 0.00 4.41
466 475 7.542130 CCAACACAGTATTAAAAAGGATTCTGC 59.458 37.037 0.00 0.00 0.00 4.26
467 476 8.576442 ACCAACACAGTATTAAAAAGGATTCTG 58.424 33.333 0.00 0.00 0.00 3.02
468 477 8.706322 ACCAACACAGTATTAAAAAGGATTCT 57.294 30.769 0.00 0.00 0.00 2.40
470 479 9.020731 CCTACCAACACAGTATTAAAAAGGATT 57.979 33.333 0.00 0.00 0.00 3.01
471 480 7.614192 CCCTACCAACACAGTATTAAAAAGGAT 59.386 37.037 0.00 0.00 0.00 3.24
472 481 6.943718 CCCTACCAACACAGTATTAAAAAGGA 59.056 38.462 0.00 0.00 0.00 3.36
473 482 6.717997 ACCCTACCAACACAGTATTAAAAAGG 59.282 38.462 0.00 0.00 0.00 3.11
474 483 7.664318 AGACCCTACCAACACAGTATTAAAAAG 59.336 37.037 0.00 0.00 0.00 2.27
475 484 7.519927 AGACCCTACCAACACAGTATTAAAAA 58.480 34.615 0.00 0.00 0.00 1.94
476 485 7.081857 AGACCCTACCAACACAGTATTAAAA 57.918 36.000 0.00 0.00 0.00 1.52
477 486 6.572898 CGAGACCCTACCAACACAGTATTAAA 60.573 42.308 0.00 0.00 0.00 1.52
478 487 5.105635 CGAGACCCTACCAACACAGTATTAA 60.106 44.000 0.00 0.00 0.00 1.40
479 488 4.400251 CGAGACCCTACCAACACAGTATTA 59.600 45.833 0.00 0.00 0.00 0.98
480 489 3.194968 CGAGACCCTACCAACACAGTATT 59.805 47.826 0.00 0.00 0.00 1.89
481 490 2.758979 CGAGACCCTACCAACACAGTAT 59.241 50.000 0.00 0.00 0.00 2.12
482 491 2.165167 CGAGACCCTACCAACACAGTA 58.835 52.381 0.00 0.00 0.00 2.74
483 492 0.966920 CGAGACCCTACCAACACAGT 59.033 55.000 0.00 0.00 0.00 3.55
484 493 1.254026 TCGAGACCCTACCAACACAG 58.746 55.000 0.00 0.00 0.00 3.66
485 494 1.342174 GTTCGAGACCCTACCAACACA 59.658 52.381 0.00 0.00 0.00 3.72
486 495 1.617357 AGTTCGAGACCCTACCAACAC 59.383 52.381 0.00 0.00 0.00 3.32
487 496 1.891150 GAGTTCGAGACCCTACCAACA 59.109 52.381 0.00 0.00 0.00 3.33
488 497 1.891150 TGAGTTCGAGACCCTACCAAC 59.109 52.381 0.00 0.00 0.00 3.77
489 498 2.297698 TGAGTTCGAGACCCTACCAA 57.702 50.000 0.00 0.00 0.00 3.67
490 499 2.297698 TTGAGTTCGAGACCCTACCA 57.702 50.000 0.00 0.00 0.00 3.25
491 500 3.952967 AGTATTGAGTTCGAGACCCTACC 59.047 47.826 0.00 0.00 0.00 3.18
492 501 5.579564 AAGTATTGAGTTCGAGACCCTAC 57.420 43.478 0.00 0.00 0.00 3.18
493 502 6.600882 AAAAGTATTGAGTTCGAGACCCTA 57.399 37.500 0.00 0.00 0.00 3.53
494 503 5.485209 AAAAGTATTGAGTTCGAGACCCT 57.515 39.130 0.00 0.00 0.00 4.34
495 504 5.106673 CCAAAAAGTATTGAGTTCGAGACCC 60.107 44.000 0.00 0.00 31.84 4.46
496 505 5.617087 GCCAAAAAGTATTGAGTTCGAGACC 60.617 44.000 0.00 0.00 31.84 3.85
497 506 5.179555 AGCCAAAAAGTATTGAGTTCGAGAC 59.820 40.000 0.00 0.00 31.84 3.36
498 507 5.305585 AGCCAAAAAGTATTGAGTTCGAGA 58.694 37.500 0.00 0.00 31.84 4.04
499 508 5.409826 AGAGCCAAAAAGTATTGAGTTCGAG 59.590 40.000 0.00 0.00 31.84 4.04
500 509 5.179368 CAGAGCCAAAAAGTATTGAGTTCGA 59.821 40.000 0.00 0.00 31.84 3.71
501 510 5.179368 TCAGAGCCAAAAAGTATTGAGTTCG 59.821 40.000 0.00 0.00 31.84 3.95
502 511 6.560253 TCAGAGCCAAAAAGTATTGAGTTC 57.440 37.500 0.00 0.00 31.84 3.01
503 512 7.885399 AGTATCAGAGCCAAAAAGTATTGAGTT 59.115 33.333 0.00 0.00 31.84 3.01
504 513 7.398024 AGTATCAGAGCCAAAAAGTATTGAGT 58.602 34.615 0.00 0.00 31.84 3.41
505 514 7.856145 AGTATCAGAGCCAAAAAGTATTGAG 57.144 36.000 0.00 0.00 31.84 3.02
531 540 9.311916 GCAATTAGTTGGTGCATGAATTTAATA 57.688 29.630 0.00 0.00 38.19 0.98
532 541 8.042515 AGCAATTAGTTGGTGCATGAATTTAAT 58.957 29.630 1.47 0.00 43.90 1.40
533 542 7.385267 AGCAATTAGTTGGTGCATGAATTTAA 58.615 30.769 1.47 0.00 43.90 1.52
534 543 6.934056 AGCAATTAGTTGGTGCATGAATTTA 58.066 32.000 1.47 0.00 43.90 1.40
535 544 5.797051 AGCAATTAGTTGGTGCATGAATTT 58.203 33.333 1.47 0.00 43.90 1.82
536 545 5.410355 AGCAATTAGTTGGTGCATGAATT 57.590 34.783 1.47 0.00 43.90 2.17
537 546 5.002464 GAGCAATTAGTTGGTGCATGAAT 57.998 39.130 7.45 0.00 45.43 2.57
538 547 4.439305 GAGCAATTAGTTGGTGCATGAA 57.561 40.909 7.45 0.00 45.43 2.57
544 553 5.200368 ACTTTTGGAGCAATTAGTTGGTG 57.800 39.130 7.45 0.00 45.43 4.17
545 554 6.127196 TCAAACTTTTGGAGCAATTAGTTGGT 60.127 34.615 1.93 1.93 41.33 3.67
546 555 6.279882 TCAAACTTTTGGAGCAATTAGTTGG 58.720 36.000 0.00 0.00 38.66 3.77
547 556 7.492344 AGTTCAAACTTTTGGAGCAATTAGTTG 59.508 33.333 1.94 0.00 38.66 3.16
548 557 7.492344 CAGTTCAAACTTTTGGAGCAATTAGTT 59.508 33.333 1.94 0.00 37.08 2.24
549 558 6.980397 CAGTTCAAACTTTTGGAGCAATTAGT 59.020 34.615 1.94 0.00 37.08 2.24
550 559 6.980397 ACAGTTCAAACTTTTGGAGCAATTAG 59.020 34.615 1.94 0.00 37.08 1.73
551 560 6.872920 ACAGTTCAAACTTTTGGAGCAATTA 58.127 32.000 1.94 0.00 37.08 1.40
552 561 5.733676 ACAGTTCAAACTTTTGGAGCAATT 58.266 33.333 1.94 0.00 37.08 2.32
553 562 5.343307 ACAGTTCAAACTTTTGGAGCAAT 57.657 34.783 1.94 0.00 37.08 3.56
554 563 4.799564 ACAGTTCAAACTTTTGGAGCAA 57.200 36.364 1.94 0.00 37.08 3.91
555 564 4.799564 AACAGTTCAAACTTTTGGAGCA 57.200 36.364 1.94 0.00 37.08 4.26
556 565 6.038271 TCTCTAACAGTTCAAACTTTTGGAGC 59.962 38.462 21.11 0.00 45.77 4.70
557 566 7.495934 TCTCTCTAACAGTTCAAACTTTTGGAG 59.504 37.037 20.40 20.40 46.67 3.86
558 567 7.335627 TCTCTCTAACAGTTCAAACTTTTGGA 58.664 34.615 7.37 7.37 37.08 3.53
559 568 7.553881 TCTCTCTAACAGTTCAAACTTTTGG 57.446 36.000 4.88 2.54 37.08 3.28
560 569 7.641802 GCTTCTCTCTAACAGTTCAAACTTTTG 59.358 37.037 4.88 0.00 37.08 2.44
561 570 7.336931 TGCTTCTCTCTAACAGTTCAAACTTTT 59.663 33.333 0.00 0.00 37.08 2.27
562 571 6.823689 TGCTTCTCTCTAACAGTTCAAACTTT 59.176 34.615 0.00 0.00 37.08 2.66
563 572 6.349300 TGCTTCTCTCTAACAGTTCAAACTT 58.651 36.000 0.00 0.00 37.08 2.66
564 573 5.918608 TGCTTCTCTCTAACAGTTCAAACT 58.081 37.500 0.00 0.00 40.60 2.66
565 574 5.986135 TCTGCTTCTCTCTAACAGTTCAAAC 59.014 40.000 0.00 0.00 0.00 2.93
566 575 5.986135 GTCTGCTTCTCTCTAACAGTTCAAA 59.014 40.000 0.00 0.00 0.00 2.69
567 576 5.069119 TGTCTGCTTCTCTCTAACAGTTCAA 59.931 40.000 0.00 0.00 0.00 2.69
568 577 4.584743 TGTCTGCTTCTCTCTAACAGTTCA 59.415 41.667 0.00 0.00 0.00 3.18
569 578 5.127693 TGTCTGCTTCTCTCTAACAGTTC 57.872 43.478 0.00 0.00 0.00 3.01
570 579 5.537300 TTGTCTGCTTCTCTCTAACAGTT 57.463 39.130 0.00 0.00 0.00 3.16
571 580 5.736951 ATTGTCTGCTTCTCTCTAACAGT 57.263 39.130 0.00 0.00 0.00 3.55
572 581 9.979578 AATATATTGTCTGCTTCTCTCTAACAG 57.020 33.333 0.00 0.00 0.00 3.16
577 586 9.323985 GTTGAAATATATTGTCTGCTTCTCTCT 57.676 33.333 0.00 0.00 0.00 3.10
578 587 9.102757 TGTTGAAATATATTGTCTGCTTCTCTC 57.897 33.333 0.00 0.00 0.00 3.20
579 588 8.887717 GTGTTGAAATATATTGTCTGCTTCTCT 58.112 33.333 0.00 0.00 0.00 3.10
580 589 8.668353 TGTGTTGAAATATATTGTCTGCTTCTC 58.332 33.333 0.00 0.00 0.00 2.87
581 590 8.565896 TGTGTTGAAATATATTGTCTGCTTCT 57.434 30.769 0.00 0.00 0.00 2.85
582 591 9.065871 GTTGTGTTGAAATATATTGTCTGCTTC 57.934 33.333 0.00 0.00 0.00 3.86
583 592 7.750458 CGTTGTGTTGAAATATATTGTCTGCTT 59.250 33.333 0.00 0.00 0.00 3.91
584 593 7.119116 TCGTTGTGTTGAAATATATTGTCTGCT 59.881 33.333 0.00 0.00 0.00 4.24
585 594 7.216317 GTCGTTGTGTTGAAATATATTGTCTGC 59.784 37.037 0.00 0.00 0.00 4.26
586 595 7.692291 GGTCGTTGTGTTGAAATATATTGTCTG 59.308 37.037 0.00 0.00 0.00 3.51
587 596 7.389330 TGGTCGTTGTGTTGAAATATATTGTCT 59.611 33.333 0.00 0.00 0.00 3.41
588 597 7.523219 TGGTCGTTGTGTTGAAATATATTGTC 58.477 34.615 0.00 0.49 0.00 3.18
589 598 7.441890 TGGTCGTTGTGTTGAAATATATTGT 57.558 32.000 0.00 0.00 0.00 2.71
590 599 8.635124 GTTTGGTCGTTGTGTTGAAATATATTG 58.365 33.333 0.00 0.00 0.00 1.90
591 600 7.535940 CGTTTGGTCGTTGTGTTGAAATATATT 59.464 33.333 0.00 0.00 0.00 1.28
592 601 7.018826 CGTTTGGTCGTTGTGTTGAAATATAT 58.981 34.615 0.00 0.00 0.00 0.86
593 602 6.018098 ACGTTTGGTCGTTGTGTTGAAATATA 60.018 34.615 0.00 0.00 41.37 0.86
594 603 5.209240 CGTTTGGTCGTTGTGTTGAAATAT 58.791 37.500 0.00 0.00 0.00 1.28
595 604 4.094590 ACGTTTGGTCGTTGTGTTGAAATA 59.905 37.500 0.00 0.00 41.37 1.40
596 605 3.119779 ACGTTTGGTCGTTGTGTTGAAAT 60.120 39.130 0.00 0.00 41.37 2.17
597 606 2.225963 ACGTTTGGTCGTTGTGTTGAAA 59.774 40.909 0.00 0.00 41.37 2.69
598 607 1.805345 ACGTTTGGTCGTTGTGTTGAA 59.195 42.857 0.00 0.00 41.37 2.69
599 608 1.440708 ACGTTTGGTCGTTGTGTTGA 58.559 45.000 0.00 0.00 41.37 3.18
600 609 2.349275 ACTACGTTTGGTCGTTGTGTTG 59.651 45.455 0.00 0.00 44.56 3.33
601 610 2.620242 ACTACGTTTGGTCGTTGTGTT 58.380 42.857 0.00 0.00 44.56 3.32
602 611 2.298411 ACTACGTTTGGTCGTTGTGT 57.702 45.000 0.00 0.00 44.56 3.72
604 613 1.136695 TCCACTACGTTTGGTCGTTGT 59.863 47.619 13.90 0.00 46.33 3.32
605 614 1.855513 TCCACTACGTTTGGTCGTTG 58.144 50.000 13.90 0.00 43.80 4.10
606 615 2.101249 TCTTCCACTACGTTTGGTCGTT 59.899 45.455 13.90 0.00 43.80 3.85
607 616 1.682854 TCTTCCACTACGTTTGGTCGT 59.317 47.619 13.90 0.00 45.97 4.34
608 617 2.427232 TCTTCCACTACGTTTGGTCG 57.573 50.000 13.90 7.84 35.42 4.79
609 618 3.064931 CCTTCTTCCACTACGTTTGGTC 58.935 50.000 13.90 0.00 35.42 4.02
610 619 2.701951 TCCTTCTTCCACTACGTTTGGT 59.298 45.455 13.90 0.03 35.42 3.67
611 620 3.396260 TCCTTCTTCCACTACGTTTGG 57.604 47.619 9.18 9.18 35.18 3.28
612 621 5.721232 ACTATCCTTCTTCCACTACGTTTG 58.279 41.667 0.00 0.00 0.00 2.93
613 622 5.479375 TGACTATCCTTCTTCCACTACGTTT 59.521 40.000 0.00 0.00 0.00 3.60
614 623 5.014858 TGACTATCCTTCTTCCACTACGTT 58.985 41.667 0.00 0.00 0.00 3.99
615 624 4.597004 TGACTATCCTTCTTCCACTACGT 58.403 43.478 0.00 0.00 0.00 3.57
616 625 5.578005 TTGACTATCCTTCTTCCACTACG 57.422 43.478 0.00 0.00 0.00 3.51
617 626 7.113658 TCATTGACTATCCTTCTTCCACTAC 57.886 40.000 0.00 0.00 0.00 2.73
618 627 7.733773 TTCATTGACTATCCTTCTTCCACTA 57.266 36.000 0.00 0.00 0.00 2.74
626 635 7.268586 TCTGCTAGTTTCATTGACTATCCTTC 58.731 38.462 0.00 0.00 0.00 3.46
633 642 7.387948 ACGTTTTATCTGCTAGTTTCATTGACT 59.612 33.333 0.00 0.00 0.00 3.41
655 664 2.248835 CGGACGGCTTTCCAACGTT 61.249 57.895 0.00 0.00 41.40 3.99
657 666 1.740296 ATCGGACGGCTTTCCAACG 60.740 57.895 0.00 0.00 35.04 4.10
658 667 1.644786 CCATCGGACGGCTTTCCAAC 61.645 60.000 0.00 0.00 35.04 3.77
662 671 1.521681 CTCCCATCGGACGGCTTTC 60.522 63.158 0.00 0.00 33.32 2.62
707 719 1.227793 GCTGGCTGATGGCTACTCC 60.228 63.158 0.00 0.00 41.46 3.85
734 746 8.697507 AGGATTGATTTTATATGGACAACCTC 57.302 34.615 0.00 0.00 37.04 3.85
749 761 8.877808 GTGAAACAAAAGAAGAGGATTGATTT 57.122 30.769 0.00 0.00 36.32 2.17
805 846 3.766591 GTGAAAGGAGAGGAGATGAGTGA 59.233 47.826 0.00 0.00 0.00 3.41
826 867 1.470890 GTCTGACTGCTAGCTTCTCGT 59.529 52.381 17.23 5.17 0.00 4.18
850 891 2.982744 GCAAGAAGTGAAGCCGCCC 61.983 63.158 0.00 0.00 0.00 6.13
851 892 2.192608 CTGCAAGAAGTGAAGCCGCC 62.193 60.000 0.00 0.00 34.07 6.13
852 893 1.208614 CTGCAAGAAGTGAAGCCGC 59.791 57.895 0.00 0.00 34.07 6.53
853 894 0.886490 ACCTGCAAGAAGTGAAGCCG 60.886 55.000 0.00 0.00 34.07 5.52
854 895 0.595095 CACCTGCAAGAAGTGAAGCC 59.405 55.000 0.00 0.00 34.07 4.35
855 896 1.534595 CTCACCTGCAAGAAGTGAAGC 59.465 52.381 9.11 0.00 39.86 3.86
857 898 3.071457 TGATCTCACCTGCAAGAAGTGAA 59.929 43.478 9.11 3.21 39.86 3.18
858 899 2.634453 TGATCTCACCTGCAAGAAGTGA 59.366 45.455 7.91 7.91 38.17 3.41
859 900 3.049708 TGATCTCACCTGCAAGAAGTG 57.950 47.619 0.00 0.00 34.07 3.16
860 901 3.777106 TTGATCTCACCTGCAAGAAGT 57.223 42.857 0.00 0.00 34.07 3.01
861 902 3.309138 CGATTGATCTCACCTGCAAGAAG 59.691 47.826 0.00 0.00 34.07 2.85
862 903 3.264947 CGATTGATCTCACCTGCAAGAA 58.735 45.455 0.00 0.00 34.07 2.52
863 904 2.897436 CGATTGATCTCACCTGCAAGA 58.103 47.619 0.00 0.00 34.07 3.02
864 905 1.329906 GCGATTGATCTCACCTGCAAG 59.670 52.381 0.00 0.00 0.00 4.01
865 906 1.065926 AGCGATTGATCTCACCTGCAA 60.066 47.619 0.00 0.00 0.00 4.08
866 907 0.538584 AGCGATTGATCTCACCTGCA 59.461 50.000 0.00 0.00 0.00 4.41
867 908 1.329906 CAAGCGATTGATCTCACCTGC 59.670 52.381 7.87 0.00 0.00 4.85
868 909 2.606725 GTCAAGCGATTGATCTCACCTG 59.393 50.000 20.26 0.00 33.02 4.00
869 910 2.499289 AGTCAAGCGATTGATCTCACCT 59.501 45.455 20.26 7.75 33.02 4.00
870 911 2.606725 CAGTCAAGCGATTGATCTCACC 59.393 50.000 20.26 5.34 30.66 4.02
871 912 2.030213 GCAGTCAAGCGATTGATCTCAC 59.970 50.000 20.26 6.73 30.66 3.51
872 913 2.274437 GCAGTCAAGCGATTGATCTCA 58.726 47.619 20.26 0.00 30.66 3.27
873 914 2.274437 TGCAGTCAAGCGATTGATCTC 58.726 47.619 20.26 11.40 37.31 2.75
874 915 2.391616 TGCAGTCAAGCGATTGATCT 57.608 45.000 20.26 14.87 37.31 2.75
875 916 4.450080 TCATATGCAGTCAAGCGATTGATC 59.550 41.667 20.26 12.88 37.31 2.92
876 917 4.383173 TCATATGCAGTCAAGCGATTGAT 58.617 39.130 20.26 5.50 37.31 2.57
877 918 3.795877 TCATATGCAGTCAAGCGATTGA 58.204 40.909 12.91 12.91 37.31 2.57
878 919 4.451435 AGATCATATGCAGTCAAGCGATTG 59.549 41.667 7.17 7.17 37.31 2.67
879 920 4.639334 AGATCATATGCAGTCAAGCGATT 58.361 39.130 0.00 0.00 37.31 3.34
880 921 4.244066 GAGATCATATGCAGTCAAGCGAT 58.756 43.478 0.00 0.00 37.31 4.58
881 922 3.068590 TGAGATCATATGCAGTCAAGCGA 59.931 43.478 0.00 0.00 37.31 4.93
882 923 3.387397 TGAGATCATATGCAGTCAAGCG 58.613 45.455 0.00 0.00 37.31 4.68
883 924 4.995487 TGATGAGATCATATGCAGTCAAGC 59.005 41.667 0.00 0.00 36.57 4.01
897 938 7.846644 AACAGAACAAGAAGATGATGAGATC 57.153 36.000 0.00 0.00 0.00 2.75
926 967 1.131883 GCGAAGAAGGTGCTAGTACGA 59.868 52.381 4.80 0.00 0.00 3.43
927 968 1.546834 GCGAAGAAGGTGCTAGTACG 58.453 55.000 4.80 0.00 0.00 3.67
928 969 1.477295 AGGCGAAGAAGGTGCTAGTAC 59.523 52.381 1.77 1.77 0.00 2.73
929 970 1.476891 CAGGCGAAGAAGGTGCTAGTA 59.523 52.381 0.00 0.00 0.00 1.82
930 971 0.247736 CAGGCGAAGAAGGTGCTAGT 59.752 55.000 0.00 0.00 0.00 2.57
931 972 0.532573 TCAGGCGAAGAAGGTGCTAG 59.467 55.000 0.00 0.00 0.00 3.42
932 973 0.973632 TTCAGGCGAAGAAGGTGCTA 59.026 50.000 0.00 0.00 0.00 3.49
933 974 0.108585 TTTCAGGCGAAGAAGGTGCT 59.891 50.000 0.00 0.00 31.28 4.40
934 975 0.519077 CTTTCAGGCGAAGAAGGTGC 59.481 55.000 0.00 0.00 31.28 5.01
935 976 0.519077 GCTTTCAGGCGAAGAAGGTG 59.481 55.000 0.00 0.00 31.28 4.00
936 977 0.606673 GGCTTTCAGGCGAAGAAGGT 60.607 55.000 0.00 0.00 31.28 3.50
937 978 1.308783 GGGCTTTCAGGCGAAGAAGG 61.309 60.000 0.00 0.13 42.43 3.46
999 1040 4.989875 AAGATATTCCTGGTCTCCCATG 57.010 45.455 0.00 0.00 40.90 3.66
1192 1233 8.852135 AGGACGAAATAAATAAGAGAGGAGTAG 58.148 37.037 0.00 0.00 0.00 2.57
1204 1245 9.214957 CATATAAGTGGCAGGACGAAATAAATA 57.785 33.333 0.00 0.00 0.00 1.40
1206 1247 7.051623 ACATATAAGTGGCAGGACGAAATAAA 58.948 34.615 0.00 0.00 0.00 1.40
1254 1296 7.592533 CAGAGTAACATCAAAAATCCTGTTGTG 59.407 37.037 0.00 0.00 34.02 3.33
1337 1379 2.687935 GTCATCGGGTACAATGCCAAAT 59.312 45.455 0.00 0.00 0.00 2.32
1358 1400 4.139420 CAACTCTTGCTCGGCGCG 62.139 66.667 0.00 0.00 43.27 6.86
1377 1419 4.948847 AGAAAAGACAACAAATCTTGGGC 58.051 39.130 0.00 0.00 36.52 5.36
1406 1470 7.172703 ACCAACACTAAAAGAATTACCGAGAAG 59.827 37.037 0.00 0.00 0.00 2.85
1516 1580 0.528684 GTGCTCTATCAGACGCCACC 60.529 60.000 0.00 0.00 0.00 4.61
1584 1648 4.020218 AGCAAGGTAGTACAAGATCTGCAA 60.020 41.667 0.00 0.00 0.00 4.08
1641 1705 2.554462 TCTTCTCCGTGAGAGTCAACAG 59.446 50.000 4.21 0.00 43.71 3.16
1686 1750 0.532573 TCAGTGGCCATCGAGTCTTC 59.467 55.000 9.72 0.00 0.00 2.87
1687 1751 0.976641 TTCAGTGGCCATCGAGTCTT 59.023 50.000 9.72 0.00 0.00 3.01
1688 1752 0.534412 CTTCAGTGGCCATCGAGTCT 59.466 55.000 9.72 0.00 0.00 3.24
1689 1753 0.532573 TCTTCAGTGGCCATCGAGTC 59.467 55.000 9.72 0.00 0.00 3.36
1690 1754 0.247736 GTCTTCAGTGGCCATCGAGT 59.752 55.000 9.72 0.00 0.00 4.18
1691 1755 0.534412 AGTCTTCAGTGGCCATCGAG 59.466 55.000 9.72 5.32 0.00 4.04
1692 1756 0.532573 GAGTCTTCAGTGGCCATCGA 59.467 55.000 9.72 5.70 0.00 3.59
1693 1757 0.803768 CGAGTCTTCAGTGGCCATCG 60.804 60.000 9.72 7.87 0.00 3.84
1694 1758 0.460987 CCGAGTCTTCAGTGGCCATC 60.461 60.000 9.72 2.38 0.00 3.51
1695 1759 0.904865 TCCGAGTCTTCAGTGGCCAT 60.905 55.000 9.72 0.00 0.00 4.40
1696 1760 1.118965 TTCCGAGTCTTCAGTGGCCA 61.119 55.000 0.00 0.00 0.00 5.36
1806 1870 4.095483 GGAACCAATCTTGTCTACAGCATG 59.905 45.833 0.00 0.00 46.00 4.06
1895 1960 5.085920 TGGACATTGGACCAATCATTCTTT 58.914 37.500 17.16 0.00 35.89 2.52
2168 3843 0.394565 GCTGCTCGTATCCATCCCTT 59.605 55.000 0.00 0.00 0.00 3.95
2170 3845 0.322975 ATGCTGCTCGTATCCATCCC 59.677 55.000 0.00 0.00 0.00 3.85
2297 3972 5.437289 TGATTCTGCAATTGTTTTCGTCT 57.563 34.783 7.40 0.00 0.00 4.18
2344 4019 0.737219 GACAGGTGCCATGATCTTGC 59.263 55.000 3.07 0.00 0.00 4.01
2435 4110 1.334869 CCGCTTAAATGGCTCATCACC 59.665 52.381 0.00 0.00 0.00 4.02
2527 4202 9.019656 TGCAATTTTTACAGCTAAGAATCCTTA 57.980 29.630 0.00 0.00 33.94 2.69
2528 4203 7.895759 TGCAATTTTTACAGCTAAGAATCCTT 58.104 30.769 0.00 0.00 36.43 3.36
2589 4264 4.514781 TGGTATCCATGTATAGTCGTGC 57.485 45.455 0.00 0.00 0.00 5.34
2595 4270 6.697395 TGATTCCGTTGGTATCCATGTATAG 58.303 40.000 0.00 0.00 31.53 1.31
2602 4277 3.262151 TCTGTTGATTCCGTTGGTATCCA 59.738 43.478 0.77 0.00 30.00 3.41
2651 4326 5.049680 GTCTTCTCCGCAACAACTATTTTCA 60.050 40.000 0.00 0.00 0.00 2.69
2682 4357 3.873952 GTGAAGATGTTGACTAGCATCCC 59.126 47.826 4.90 0.23 43.25 3.85
2707 4382 4.467795 TGGAGCTGCTATACTCATTATCCC 59.532 45.833 6.82 0.00 34.48 3.85
2797 4472 7.615582 ACATCACCACTTGTTTGTATGATAG 57.384 36.000 0.00 0.00 0.00 2.08
3089 4784 2.169832 ATGTGTTCCGTCTCCACAAG 57.830 50.000 0.00 0.00 41.91 3.16
3247 4942 3.475774 CGGCGTGTTGTAGACCGC 61.476 66.667 0.00 0.00 42.99 5.68
3271 4966 1.471684 CAGCTGAGGAGGCAAATCAAC 59.528 52.381 8.42 0.00 0.00 3.18
3438 5136 3.054802 CCTCTATCAAGCTCCCAAAGTGT 60.055 47.826 0.00 0.00 0.00 3.55
3439 5137 3.539604 CCTCTATCAAGCTCCCAAAGTG 58.460 50.000 0.00 0.00 0.00 3.16
3535 5233 1.471684 CCTGTCAAGCTTTGATCTGGC 59.528 52.381 0.00 0.00 42.47 4.85
3585 5283 1.668751 GCCATGGCATGCAATTCTTTG 59.331 47.619 32.08 2.49 41.49 2.77
3651 5352 5.639082 CCAACCCAGTGAATGAATAAAAAGC 59.361 40.000 0.00 0.00 0.00 3.51
3697 5408 7.725251 ACACCAGTGAATAAAATTGACAATGT 58.275 30.769 4.48 0.00 0.00 2.71
3752 5463 4.756642 TCTCATGACAAGGACAATGACAAC 59.243 41.667 0.00 0.00 0.00 3.32
3759 5470 6.491062 ACATCATTTTCTCATGACAAGGACAA 59.509 34.615 0.00 0.00 35.97 3.18
3781 5492 8.495949 GCATAAATACGAATAGTACTTGCACAT 58.504 33.333 0.00 0.00 38.29 3.21
3785 5496 8.548721 ACAAGCATAAATACGAATAGTACTTGC 58.451 33.333 0.00 0.00 36.35 4.01
3794 5505 6.564686 CGCTGATCACAAGCATAAATACGAAT 60.565 38.462 6.28 0.00 0.00 3.34
3807 5522 4.083643 ACATTTTGTCTCGCTGATCACAAG 60.084 41.667 0.00 0.00 30.66 3.16
3818 5533 3.002656 ACAGCACAGAACATTTTGTCTCG 59.997 43.478 0.00 0.00 0.00 4.04
3842 5569 6.502136 TCTGAGTAAGATACACTGACACAG 57.498 41.667 0.00 0.00 44.59 3.66
3846 5573 8.247562 AGATGTTTCTGAGTAAGATACACTGAC 58.752 37.037 3.11 0.00 45.78 3.51
3847 5574 8.354711 AGATGTTTCTGAGTAAGATACACTGA 57.645 34.615 3.11 0.00 45.78 3.41
3869 5596 7.039082 TGGGAATGCAAAGCTTTAAACTTAGAT 60.039 33.333 12.25 0.00 0.00 1.98
3901 5628 2.165030 AGGTGGACGTAAACGGTGATAG 59.835 50.000 7.50 0.00 44.95 2.08
3917 5646 8.695456 AGAAAGTTTGGCATAATTATTAGGTGG 58.305 33.333 0.00 0.00 0.00 4.61
4030 5776 3.412386 AGTGTTTGTAGCAACATCCCTC 58.588 45.455 0.00 0.00 34.97 4.30
4061 5807 2.125147 TTGGCGGCTCGAGAATGG 60.125 61.111 18.75 2.20 0.00 3.16
4240 5987 1.473278 GACCTCATCGAGTCGTTCCTT 59.527 52.381 13.12 0.00 0.00 3.36
4261 6008 2.030562 CGCAACTTCCTGGACGGT 59.969 61.111 5.11 0.00 0.00 4.83
4309 6056 4.662961 CACGAGCAGTGGCGGTCA 62.663 66.667 4.63 0.00 46.77 4.02
4432 6179 2.762327 GGTCATCTTTGGCACCATCAAT 59.238 45.455 0.00 0.00 0.00 2.57
4474 6221 3.781770 GATGCGCCTCCCTGACTCG 62.782 68.421 4.18 0.00 0.00 4.18
4480 6227 3.790437 CTGGTGATGCGCCTCCCT 61.790 66.667 4.18 0.00 34.70 4.20
4561 6308 1.304547 CACAGACGAGGAGAGGGGT 60.305 63.158 0.00 0.00 0.00 4.95
4591 6338 1.802960 CTCTTCACTGTGCGCAAGAAT 59.197 47.619 14.00 0.00 43.02 2.40
4609 6356 2.289072 TGCAGAGAACAGCTACAACCTC 60.289 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.