Multiple sequence alignment - TraesCS1D01G445400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G445400 chr1D 100.000 3951 0 0 1 3951 488483410 488487360 0.000000e+00 7297.0
1 TraesCS1D01G445400 chr1D 81.989 2232 347 34 547 2740 487896188 487893974 0.000000e+00 1844.0
2 TraesCS1D01G445400 chr1D 84.375 256 38 2 1 255 487896805 487896551 2.360000e-62 250.0
3 TraesCS1D01G445400 chrUn 96.358 3789 107 14 1 3769 8845487 8841710 0.000000e+00 6204.0
4 TraesCS1D01G445400 chrUn 96.454 141 5 0 3811 3951 8841711 8841571 2.370000e-57 233.0
5 TraesCS1D01G445400 chr1A 83.931 2203 306 28 547 2740 586924714 586922551 0.000000e+00 2063.0
6 TraesCS1D01G445400 chr1A 81.162 2134 344 40 652 2744 586518619 586516503 0.000000e+00 1661.0
7 TraesCS1D01G445400 chr1A 80.307 2021 351 36 755 2744 586332537 586330533 0.000000e+00 1483.0
8 TraesCS1D01G445400 chr1A 78.953 1986 336 58 804 2752 586410119 586408179 0.000000e+00 1277.0
9 TraesCS1D01G445400 chr1A 79.761 1843 294 49 673 2466 586712569 586710757 0.000000e+00 1264.0
10 TraesCS1D01G445400 chr1A 77.442 2119 392 59 671 2737 586316321 586314237 0.000000e+00 1186.0
11 TraesCS1D01G445400 chr1A 80.425 1599 251 42 755 2325 586362287 586360723 0.000000e+00 1162.0
12 TraesCS1D01G445400 chr1A 78.176 1732 323 35 1043 2746 586381336 586379632 0.000000e+00 1053.0
13 TraesCS1D01G445400 chr1A 81.059 491 69 14 2 473 586713601 586713116 1.730000e-98 370.0
14 TraesCS1D01G445400 chr1A 80.691 492 70 8 1 479 586925355 586924876 3.750000e-95 359.0
15 TraesCS1D01G445400 chr1A 78.862 492 74 23 1 479 586519320 586518846 4.960000e-79 305.0
16 TraesCS1D01G445400 chr1A 81.609 348 55 6 1 347 586317234 586316895 3.010000e-71 279.0
17 TraesCS1D01G445400 chr1A 81.322 348 56 6 1 347 586347621 586347282 1.400000e-69 274.0
18 TraesCS1D01G445400 chr1B 81.206 2123 353 29 652 2740 679709296 679707186 0.000000e+00 1668.0
19 TraesCS1D01G445400 chr1B 79.338 1965 366 30 804 2746 679700326 679698380 0.000000e+00 1343.0
20 TraesCS1D01G445400 chr1B 77.573 2118 396 57 671 2738 679654737 679652649 0.000000e+00 1206.0
21 TraesCS1D01G445400 chr1B 80.420 429 68 9 1 416 679710021 679709596 2.960000e-81 313.0
22 TraesCS1D01G445400 chr1B 81.322 348 56 6 1 347 679655904 679655565 1.400000e-69 274.0
23 TraesCS1D01G445400 chr4A 74.854 1881 393 52 817 2658 729746129 729747968 0.000000e+00 780.0
24 TraesCS1D01G445400 chr4A 74.303 1794 381 60 818 2564 728831397 728833157 0.000000e+00 686.0
25 TraesCS1D01G445400 chr4A 79.167 120 20 2 1865 1980 729650904 729651022 1.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G445400 chr1D 488483410 488487360 3950 False 7297.0 7297 100.0000 1 3951 1 chr1D.!!$F1 3950
1 TraesCS1D01G445400 chr1D 487893974 487896805 2831 True 1047.0 1844 83.1820 1 2740 2 chr1D.!!$R1 2739
2 TraesCS1D01G445400 chrUn 8841571 8845487 3916 True 3218.5 6204 96.4060 1 3951 2 chrUn.!!$R1 3950
3 TraesCS1D01G445400 chr1A 586330533 586332537 2004 True 1483.0 1483 80.3070 755 2744 1 chr1A.!!$R1 1989
4 TraesCS1D01G445400 chr1A 586408179 586410119 1940 True 1277.0 1277 78.9530 804 2752 1 chr1A.!!$R5 1948
5 TraesCS1D01G445400 chr1A 586922551 586925355 2804 True 1211.0 2063 82.3110 1 2740 2 chr1A.!!$R9 2739
6 TraesCS1D01G445400 chr1A 586360723 586362287 1564 True 1162.0 1162 80.4250 755 2325 1 chr1A.!!$R3 1570
7 TraesCS1D01G445400 chr1A 586379632 586381336 1704 True 1053.0 1053 78.1760 1043 2746 1 chr1A.!!$R4 1703
8 TraesCS1D01G445400 chr1A 586516503 586519320 2817 True 983.0 1661 80.0120 1 2744 2 chr1A.!!$R7 2743
9 TraesCS1D01G445400 chr1A 586710757 586713601 2844 True 817.0 1264 80.4100 2 2466 2 chr1A.!!$R8 2464
10 TraesCS1D01G445400 chr1A 586314237 586317234 2997 True 732.5 1186 79.5255 1 2737 2 chr1A.!!$R6 2736
11 TraesCS1D01G445400 chr1B 679698380 679700326 1946 True 1343.0 1343 79.3380 804 2746 1 chr1B.!!$R1 1942
12 TraesCS1D01G445400 chr1B 679707186 679710021 2835 True 990.5 1668 80.8130 1 2740 2 chr1B.!!$R3 2739
13 TraesCS1D01G445400 chr1B 679652649 679655904 3255 True 740.0 1206 79.4475 1 2738 2 chr1B.!!$R2 2737
14 TraesCS1D01G445400 chr4A 729746129 729747968 1839 False 780.0 780 74.8540 817 2658 1 chr4A.!!$F3 1841
15 TraesCS1D01G445400 chr4A 728831397 728833157 1760 False 686.0 686 74.3030 818 2564 1 chr4A.!!$F1 1746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 1.100510 AGCTCGCAATTCACATGCAT 58.899 45.000 0.0 0.0 44.01 3.96 F
1190 1917 1.302907 AGATCATTGAAGGGCTGGGT 58.697 50.000 0.0 0.0 0.00 4.51 F
2140 2922 1.070445 CTGATGATCGAGGTGGGGC 59.930 63.158 0.0 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 2382 0.557238 TGGGCCATATGTTGCTCCAT 59.443 50.0 0.0 0.0 0.00 3.41 R
2720 3533 1.167781 TTCAACGGAAGGGCGGTTTC 61.168 55.0 0.0 0.0 37.88 2.78 R
3492 4306 0.173481 TCTCATCAAGCCGAAGACCG 59.827 55.0 0.0 0.0 38.18 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.426983 TGGTGTCCATTGTGGGATTCA 59.573 47.619 0.00 0.00 39.62 2.57
94 95 1.100510 AGCTCGCAATTCACATGCAT 58.899 45.000 0.00 0.00 44.01 3.96
98 99 1.476235 CGCAATTCACATGCATGGCG 61.476 55.000 29.41 26.48 44.01 5.69
662 910 3.689161 TCTTCTGGGCATTGTGATAAACG 59.311 43.478 0.00 0.00 0.00 3.60
687 1391 7.376866 CGTGAACAATCATATGCTTTGGTATTC 59.623 37.037 17.30 13.40 38.01 1.75
696 1400 8.250332 TCATATGCTTTGGTATTCCTTTTTCAC 58.750 33.333 0.00 0.00 34.23 3.18
1124 1851 9.044150 TGAAATTTTGAAAAAGTGTCATGGATC 57.956 29.630 0.00 0.00 0.00 3.36
1190 1917 1.302907 AGATCATTGAAGGGCTGGGT 58.697 50.000 0.00 0.00 0.00 4.51
1646 2382 4.916183 TGTATGACATCCATTGTTGGTGA 58.084 39.130 0.00 0.00 44.06 4.02
1695 2441 4.188247 TGCTAGCTTATCACAAGTTCGT 57.812 40.909 17.23 0.00 0.00 3.85
1842 2594 6.873605 GCCAATTGTTTCAGCTAAGGTATTTT 59.126 34.615 4.43 0.00 0.00 1.82
2080 2862 2.089980 GGGTGATCCATCATAGCATGC 58.910 52.381 10.51 10.51 39.30 4.06
2140 2922 1.070445 CTGATGATCGAGGTGGGGC 59.930 63.158 0.00 0.00 0.00 5.80
2402 3209 6.043243 TCAACTGAGGAGGTTTATCTTCTTGT 59.957 38.462 0.00 0.00 0.00 3.16
2518 3325 4.762251 AGTACCTTGAATTTTGGTCTCAGC 59.238 41.667 1.99 0.00 35.48 4.26
2720 3533 1.331756 GAATGCCTTATCAGCACACCG 59.668 52.381 0.00 0.00 44.40 4.94
2859 3672 8.470805 TGCTTCAGTAGTTTTGGAAAAACATAA 58.529 29.630 15.72 1.29 32.81 1.90
2945 3758 1.451067 ACGTGAGGAGGTAGTTCGAG 58.549 55.000 0.00 0.00 0.00 4.04
2961 3774 2.032681 AGTTTGACTGCCGCCTCC 59.967 61.111 0.00 0.00 0.00 4.30
3149 3962 7.119116 ACTCGTTAAACAACTGCATCAATCATA 59.881 33.333 0.00 0.00 0.00 2.15
3153 3966 8.800972 GTTAAACAACTGCATCAATCATATGTG 58.199 33.333 1.90 0.00 0.00 3.21
3255 4068 1.701704 CGTCCCAGAATTTTTGCTGC 58.298 50.000 0.00 0.00 0.00 5.25
3259 4072 1.066645 CCCAGAATTTTTGCTGCCTCC 60.067 52.381 0.00 0.00 0.00 4.30
3295 4108 6.472163 GAAACAGTTTTCAGAAGAATTCGCAA 59.528 34.615 0.00 0.00 40.00 4.85
3367 4180 6.109359 GCATGAGACCTGTACAATCTAGTTT 58.891 40.000 8.86 0.00 0.00 2.66
3369 4182 7.928706 GCATGAGACCTGTACAATCTAGTTTAT 59.071 37.037 8.86 0.00 0.00 1.40
3395 4208 5.915758 GTGGTAGACTAAATAGCATCTGACG 59.084 44.000 0.00 0.00 33.60 4.35
3398 4211 6.206243 GGTAGACTAAATAGCATCTGACGGTA 59.794 42.308 0.00 0.00 0.00 4.02
3416 4230 5.285798 CGGTACCGTGTTTGTATTTGATT 57.714 39.130 26.39 0.00 34.35 2.57
3451 4265 1.933853 GCGGTTGGTATAGCAGTTGAG 59.066 52.381 4.57 0.00 0.00 3.02
3456 4270 5.354234 CGGTTGGTATAGCAGTTGAGATTTT 59.646 40.000 4.57 0.00 0.00 1.82
3487 4301 2.158682 TGGAGCTGCCAAGTCTTTGTTA 60.159 45.455 1.53 0.00 45.87 2.41
3492 4306 3.366374 GCTGCCAAGTCTTTGTTATGGTC 60.366 47.826 0.00 0.00 33.63 4.02
3517 4331 3.055891 TCTTCGGCTTGATGAGATTGTGA 60.056 43.478 0.00 0.00 0.00 3.58
3552 4366 0.107800 TGCAGGCTCAGAGCTCAATC 60.108 55.000 21.99 4.95 41.99 2.67
3565 4379 2.159128 AGCTCAATCAGAGTGGATGTCG 60.159 50.000 0.00 0.00 46.47 4.35
3574 4388 1.203523 GAGTGGATGTCGAAGCTGAGT 59.796 52.381 0.00 0.00 0.00 3.41
3579 4393 2.094182 GGATGTCGAAGCTGAGTGGTAA 60.094 50.000 0.00 0.00 0.00 2.85
3681 4498 5.159209 CAAAAGAAGGTTGAAGCTGCATAG 58.841 41.667 5.02 0.00 0.00 2.23
3726 4549 0.908198 AGAAGGTAGCAGCTGAAGGG 59.092 55.000 20.43 0.00 0.00 3.95
3767 4590 4.569162 TGTACAGAGTCAAACTTTTCGTGG 59.431 41.667 0.00 0.00 0.00 4.94
3768 4591 3.869065 ACAGAGTCAAACTTTTCGTGGA 58.131 40.909 0.00 0.00 0.00 4.02
3769 4592 4.258543 ACAGAGTCAAACTTTTCGTGGAA 58.741 39.130 0.00 0.00 0.00 3.53
3770 4593 4.094442 ACAGAGTCAAACTTTTCGTGGAAC 59.906 41.667 0.00 0.00 0.00 3.62
3771 4594 4.332819 CAGAGTCAAACTTTTCGTGGAACT 59.667 41.667 0.00 0.00 31.75 3.01
3772 4595 4.332819 AGAGTCAAACTTTTCGTGGAACTG 59.667 41.667 0.00 0.00 31.75 3.16
3773 4596 3.377172 AGTCAAACTTTTCGTGGAACTGG 59.623 43.478 0.00 0.00 31.75 4.00
3774 4597 2.098443 TCAAACTTTTCGTGGAACTGGC 59.902 45.455 0.00 0.00 31.75 4.85
3775 4598 1.757682 AACTTTTCGTGGAACTGGCA 58.242 45.000 0.00 0.00 31.75 4.92
3776 4599 1.981256 ACTTTTCGTGGAACTGGCAT 58.019 45.000 0.00 0.00 31.75 4.40
3777 4600 1.608590 ACTTTTCGTGGAACTGGCATG 59.391 47.619 0.00 0.00 31.75 4.06
3778 4601 1.879380 CTTTTCGTGGAACTGGCATGA 59.121 47.619 0.00 0.00 31.75 3.07
3779 4602 1.522668 TTTCGTGGAACTGGCATGAG 58.477 50.000 0.00 0.00 31.75 2.90
3780 4603 0.396435 TTCGTGGAACTGGCATGAGT 59.604 50.000 0.00 0.00 31.75 3.41
3781 4604 0.037326 TCGTGGAACTGGCATGAGTC 60.037 55.000 0.00 0.00 31.75 3.36
3782 4605 0.036952 CGTGGAACTGGCATGAGTCT 60.037 55.000 0.00 0.00 31.75 3.24
3783 4606 1.609061 CGTGGAACTGGCATGAGTCTT 60.609 52.381 0.00 0.00 31.75 3.01
3784 4607 2.079925 GTGGAACTGGCATGAGTCTTC 58.920 52.381 0.00 0.00 0.00 2.87
3785 4608 1.003580 TGGAACTGGCATGAGTCTTCC 59.996 52.381 0.00 1.29 0.00 3.46
3786 4609 1.280421 GGAACTGGCATGAGTCTTCCT 59.720 52.381 0.00 0.00 0.00 3.36
3787 4610 2.354259 GAACTGGCATGAGTCTTCCTG 58.646 52.381 0.00 0.00 0.00 3.86
3788 4611 1.649321 ACTGGCATGAGTCTTCCTGA 58.351 50.000 0.00 0.00 0.00 3.86
3789 4612 1.980765 ACTGGCATGAGTCTTCCTGAA 59.019 47.619 0.00 0.00 0.00 3.02
3790 4613 2.027377 ACTGGCATGAGTCTTCCTGAAG 60.027 50.000 0.00 0.31 39.71 3.02
3791 4614 2.235650 CTGGCATGAGTCTTCCTGAAGA 59.764 50.000 5.50 5.50 44.47 2.87
3803 4626 5.541845 TCTTCCTGAAGATATGTTATGCGG 58.458 41.667 5.50 0.00 42.06 5.69
3804 4627 3.664107 TCCTGAAGATATGTTATGCGGC 58.336 45.455 0.00 0.00 0.00 6.53
3805 4628 3.070878 TCCTGAAGATATGTTATGCGGCA 59.929 43.478 4.58 4.58 0.00 5.69
3806 4629 3.814842 CCTGAAGATATGTTATGCGGCAA 59.185 43.478 6.82 0.00 0.00 4.52
3807 4630 4.319766 CCTGAAGATATGTTATGCGGCAAC 60.320 45.833 6.82 1.66 0.00 4.17
3808 4631 3.563808 TGAAGATATGTTATGCGGCAACC 59.436 43.478 6.82 0.00 0.00 3.77
3809 4632 3.492102 AGATATGTTATGCGGCAACCT 57.508 42.857 6.82 0.00 0.00 3.50
3886 4709 2.128035 GAGTCGACAGTTGTCCACTTG 58.872 52.381 19.50 0.00 44.48 3.16
3932 4755 3.710209 AGGCTGTTACTGAGCTCAATT 57.290 42.857 18.85 10.23 36.63 2.32
3934 4757 4.401925 AGGCTGTTACTGAGCTCAATTTT 58.598 39.130 18.85 5.01 36.63 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.595986 AGTGTTGTTTTACCAAGACCACT 58.404 39.130 0.00 0.00 38.88 4.00
114 115 4.423913 AGCTCAATCATATCAGGCCTCTA 58.576 43.478 0.00 0.00 0.00 2.43
164 165 4.202357 CGGGATGAATTGGACTCCTTCATA 60.202 45.833 10.98 0.00 39.16 2.15
639 881 4.201851 CGTTTATCACAATGCCCAGAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
650 898 9.720667 CATATGATTGTTCACGTTTATCACAAT 57.279 29.630 0.00 7.09 40.07 2.71
662 910 7.649306 GGAATACCAAAGCATATGATTGTTCAC 59.351 37.037 7.03 0.00 33.44 3.18
984 1710 5.672194 AGGTTCCATTTGTAGATACCCTCAT 59.328 40.000 0.00 0.00 0.00 2.90
1190 1917 6.303839 GCACCCAAATAATCCCTTATACTCA 58.696 40.000 0.00 0.00 0.00 3.41
1563 2296 4.262121 GCCATGCCTTCATAATTGTATGCA 60.262 41.667 0.00 0.00 37.59 3.96
1646 2382 0.557238 TGGGCCATATGTTGCTCCAT 59.443 50.000 0.00 0.00 0.00 3.41
1695 2441 5.245075 GGAGTTCCCCAACATTGTAAATGAA 59.755 40.000 6.96 0.00 34.60 2.57
1842 2594 1.063266 GGATATGGCCCCAAAACCTGA 60.063 52.381 0.00 0.00 0.00 3.86
2080 2862 2.037251 CACCGAGACCCATAATACCCTG 59.963 54.545 0.00 0.00 0.00 4.45
2140 2922 2.555757 CAAGTTCTGGCTTCTCCAAAGG 59.444 50.000 0.00 0.00 46.01 3.11
2518 3325 3.435026 CCCAGGTACCCCATAACATCTTG 60.435 52.174 8.74 0.00 0.00 3.02
2720 3533 1.167781 TTCAACGGAAGGGCGGTTTC 61.168 55.000 0.00 0.00 37.88 2.78
2859 3672 7.070571 TGGTTAACTTGGGTGAAAATCTGAATT 59.929 33.333 5.42 0.00 0.00 2.17
2945 3758 3.056328 GGGAGGCGGCAGTCAAAC 61.056 66.667 13.08 0.00 0.00 2.93
2969 3782 1.453155 AACATCGACAAGGATGCCAC 58.547 50.000 2.65 0.00 46.11 5.01
3149 3962 8.864087 TCATTAGACTAGATTACAGATGCACAT 58.136 33.333 0.00 0.00 0.00 3.21
3187 4000 7.727591 GGTGTACTGTGACCATAGTTGGAAAC 61.728 46.154 4.79 0.00 46.92 2.78
3226 4039 4.689612 AATTCTGGGACGCACTGTATAT 57.310 40.909 0.00 0.00 0.00 0.86
3227 4040 4.481368 AAATTCTGGGACGCACTGTATA 57.519 40.909 0.00 0.00 0.00 1.47
3228 4041 3.350219 AAATTCTGGGACGCACTGTAT 57.650 42.857 0.00 0.00 0.00 2.29
3255 4068 4.377897 ACTGTTTCAGAAAGTTACGGAGG 58.622 43.478 0.00 0.00 35.18 4.30
3285 4098 3.648339 ACAAATGTGCTTGCGAATTCT 57.352 38.095 3.52 0.00 0.00 2.40
3295 4108 4.589216 ATGTTGTAGCAACAAATGTGCT 57.411 36.364 16.95 4.14 46.84 4.40
3369 4182 7.041303 CGTCAGATGCTATTTAGTCTACCACTA 60.041 40.741 0.00 0.00 36.43 2.74
3395 4208 8.452534 TCAATAATCAAATACAAACACGGTACC 58.547 33.333 0.16 0.16 0.00 3.34
3398 4211 9.751542 TTTTCAATAATCAAATACAAACACGGT 57.248 25.926 0.00 0.00 0.00 4.83
3416 4230 3.057596 CCAACCGCTCTTGCTTTTCAATA 60.058 43.478 0.00 0.00 36.97 1.90
3456 4270 3.084536 TGGCAGCTCCATGTATGAAAA 57.915 42.857 1.25 0.00 40.72 2.29
3474 4288 3.408634 ACCGACCATAACAAAGACTTGG 58.591 45.455 0.00 0.00 36.82 3.61
3487 4301 1.079127 CAAGCCGAAGACCGACCAT 60.079 57.895 0.00 0.00 41.76 3.55
3492 4306 0.173481 TCTCATCAAGCCGAAGACCG 59.827 55.000 0.00 0.00 38.18 4.79
3552 4366 1.203287 TCAGCTTCGACATCCACTCTG 59.797 52.381 0.00 0.00 0.00 3.35
3565 4379 1.807142 GGCACTTTACCACTCAGCTTC 59.193 52.381 0.00 0.00 0.00 3.86
3574 4388 2.034878 TGCATTGTTGGCACTTTACCA 58.965 42.857 0.00 0.00 36.11 3.25
3579 4393 2.295349 CTCTTCTGCATTGTTGGCACTT 59.705 45.455 0.00 0.00 36.11 3.16
3611 4428 3.557898 CCTCAAGTGCAGCTTCCTTCTTA 60.558 47.826 0.00 0.00 34.69 2.10
3681 4498 3.269178 CTCATCTTGTCCTGCTTCCTTC 58.731 50.000 0.00 0.00 0.00 3.46
3767 4590 2.027745 TCAGGAAGACTCATGCCAGTTC 60.028 50.000 0.00 0.00 33.29 3.01
3768 4591 1.980765 TCAGGAAGACTCATGCCAGTT 59.019 47.619 0.00 0.00 33.29 3.16
3769 4592 1.649321 TCAGGAAGACTCATGCCAGT 58.351 50.000 0.00 0.00 33.29 4.00
3770 4593 2.235650 TCTTCAGGAAGACTCATGCCAG 59.764 50.000 7.62 0.00 42.06 4.85
3771 4594 2.259917 TCTTCAGGAAGACTCATGCCA 58.740 47.619 7.62 0.00 42.06 4.92
3781 4604 4.153117 GCCGCATAACATATCTTCAGGAAG 59.847 45.833 2.60 2.60 39.71 3.46
3782 4605 4.065088 GCCGCATAACATATCTTCAGGAA 58.935 43.478 0.00 0.00 0.00 3.36
3783 4606 3.070878 TGCCGCATAACATATCTTCAGGA 59.929 43.478 0.00 0.00 0.00 3.86
3784 4607 3.402110 TGCCGCATAACATATCTTCAGG 58.598 45.455 0.00 0.00 0.00 3.86
3785 4608 4.319766 GGTTGCCGCATAACATATCTTCAG 60.320 45.833 0.00 0.00 0.00 3.02
3786 4609 3.563808 GGTTGCCGCATAACATATCTTCA 59.436 43.478 0.00 0.00 0.00 3.02
3787 4610 3.815401 AGGTTGCCGCATAACATATCTTC 59.185 43.478 0.00 0.00 0.00 2.87
3788 4611 3.565482 CAGGTTGCCGCATAACATATCTT 59.435 43.478 0.00 0.00 0.00 2.40
3789 4612 3.141398 CAGGTTGCCGCATAACATATCT 58.859 45.455 0.00 0.00 0.00 1.98
3790 4613 3.138304 TCAGGTTGCCGCATAACATATC 58.862 45.455 0.00 0.00 0.00 1.63
3791 4614 3.207265 TCAGGTTGCCGCATAACATAT 57.793 42.857 0.00 0.00 0.00 1.78
3792 4615 2.700722 TCAGGTTGCCGCATAACATA 57.299 45.000 0.00 0.00 0.00 2.29
3793 4616 2.057137 ATCAGGTTGCCGCATAACAT 57.943 45.000 0.00 0.00 0.00 2.71
3794 4617 2.700722 TATCAGGTTGCCGCATAACA 57.299 45.000 0.00 0.00 0.00 2.41
3795 4618 4.935205 TCATATATCAGGTTGCCGCATAAC 59.065 41.667 0.00 0.00 0.00 1.89
3796 4619 5.159273 TCATATATCAGGTTGCCGCATAA 57.841 39.130 0.00 0.00 0.00 1.90
3797 4620 4.817318 TCATATATCAGGTTGCCGCATA 57.183 40.909 0.00 0.00 0.00 3.14
3798 4621 3.701205 TCATATATCAGGTTGCCGCAT 57.299 42.857 0.00 0.00 0.00 4.73
3799 4622 3.701205 ATCATATATCAGGTTGCCGCA 57.299 42.857 0.00 0.00 0.00 5.69
3800 4623 5.178797 ACTAATCATATATCAGGTTGCCGC 58.821 41.667 0.00 0.00 0.00 6.53
3801 4624 6.533012 CAGACTAATCATATATCAGGTTGCCG 59.467 42.308 0.00 0.00 0.00 5.69
3802 4625 6.314896 GCAGACTAATCATATATCAGGTTGCC 59.685 42.308 0.00 0.00 0.00 4.52
3803 4626 6.875726 TGCAGACTAATCATATATCAGGTTGC 59.124 38.462 0.00 0.00 0.00 4.17
3804 4627 9.096160 GATGCAGACTAATCATATATCAGGTTG 57.904 37.037 0.00 0.00 0.00 3.77
3805 4628 8.819845 TGATGCAGACTAATCATATATCAGGTT 58.180 33.333 0.00 0.00 0.00 3.50
3806 4629 8.371571 TGATGCAGACTAATCATATATCAGGT 57.628 34.615 0.00 0.00 0.00 4.00
3807 4630 8.476447 ACTGATGCAGACTAATCATATATCAGG 58.524 37.037 0.00 0.00 41.82 3.86
3808 4631 9.872721 AACTGATGCAGACTAATCATATATCAG 57.127 33.333 0.00 0.00 42.68 2.90
3849 4672 5.066634 GTCGACTCTGAACATATCTTCAGGA 59.933 44.000 17.51 6.98 45.04 3.86
3886 4709 2.422231 TTGGTGGGTGTGCTTGTGC 61.422 57.895 0.00 0.00 40.20 4.57
3918 4741 5.243507 TGGCAATGAAAATTGAGCTCAGTAA 59.756 36.000 17.43 2.24 33.55 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.