Multiple sequence alignment - TraesCS1D01G443800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G443800 chr1D 100.000 2158 0 0 1 2158 487356510 487354353 0.000000e+00 3986.0
1 TraesCS1D01G443800 chr1D 88.291 316 27 6 25 330 35936074 35935759 1.120000e-98 370.0
2 TraesCS1D01G443800 chr1D 80.300 467 60 17 1253 1710 487439481 487439038 8.870000e-85 324.0
3 TraesCS1D01G443800 chr1D 100.000 161 0 0 2411 2571 487354100 487353940 5.380000e-77 298.0
4 TraesCS1D01G443800 chr1D 83.183 333 23 13 406 710 467900774 467901101 9.060000e-70 274.0
5 TraesCS1D01G443800 chr1D 83.521 267 30 9 853 1107 487439760 487439496 1.190000e-58 237.0
6 TraesCS1D01G443800 chr1D 93.333 75 0 3 1113 1182 10183790 10183716 3.500000e-19 106.0
7 TraesCS1D01G443800 chr1D 93.151 73 0 3 1114 1181 88315259 88315331 4.530000e-18 102.0
8 TraesCS1D01G443800 chr1B 93.164 1141 47 10 1 1115 641214426 641213291 0.000000e+00 1646.0
9 TraesCS1D01G443800 chr1B 95.484 465 15 2 1250 1710 678907903 678908365 0.000000e+00 737.0
10 TraesCS1D01G443800 chr1B 92.647 476 18 4 1249 1710 641213290 641212818 0.000000e+00 669.0
11 TraesCS1D01G443800 chr1B 95.122 287 12 2 831 1116 678907619 678907904 3.900000e-123 451.0
12 TraesCS1D01G443800 chr1B 92.035 226 7 5 619 834 678907050 678907274 8.940000e-80 307.0
13 TraesCS1D01G443800 chr1B 93.789 161 4 2 2411 2571 641212209 641212055 1.190000e-58 237.0
14 TraesCS1D01G443800 chr1B 80.938 320 36 19 805 1107 678867610 678867921 1.990000e-56 230.0
15 TraesCS1D01G443800 chr1B 93.636 110 7 0 2411 2520 678908652 678908761 5.690000e-37 165.0
16 TraesCS1D01G443800 chr1B 92.500 80 1 3 1108 1182 429603133 429603054 2.700000e-20 110.0
17 TraesCS1D01G443800 chr1B 100.000 35 0 0 2537 2571 678908762 678908796 5.940000e-07 65.8
18 TraesCS1D01G443800 chrUn 83.784 333 20 13 408 710 282890935 282890607 4.190000e-73 285.0
19 TraesCS1D01G443800 chrUn 83.784 333 20 13 408 710 295720606 295720934 4.190000e-73 285.0
20 TraesCS1D01G443800 chrUn 83.784 333 20 13 408 710 311088376 311088048 4.190000e-73 285.0
21 TraesCS1D01G443800 chrUn 73.529 204 37 12 125 314 23393198 23393398 7.680000e-06 62.1
22 TraesCS1D01G443800 chrUn 73.529 204 37 12 125 314 267107205 267107405 7.680000e-06 62.1
23 TraesCS1D01G443800 chrUn 73.529 204 37 12 125 314 267124798 267124998 7.680000e-06 62.1
24 TraesCS1D01G443800 chr6A 83.434 332 22 12 408 710 63094056 63094383 7.010000e-71 278.0
25 TraesCS1D01G443800 chr2B 83.384 331 23 14 409 710 793814642 793814315 7.010000e-71 278.0
26 TraesCS1D01G443800 chr6B 82.883 333 23 12 406 710 34163954 34164280 4.220000e-68 268.0
27 TraesCS1D01G443800 chr6B 81.962 316 23 12 406 693 477192214 477192523 1.190000e-58 237.0
28 TraesCS1D01G443800 chr6B 95.349 43 1 1 1210 1251 634979897 634979855 1.650000e-07 67.6
29 TraesCS1D01G443800 chr1A 83.456 272 32 8 847 1107 585452511 585452780 9.190000e-60 241.0
30 TraesCS1D01G443800 chr1A 85.577 208 19 7 914 1111 585391596 585391390 9.320000e-50 207.0
31 TraesCS1D01G443800 chr7A 83.577 274 22 11 409 664 731885695 731885427 4.280000e-58 235.0
32 TraesCS1D01G443800 chr7A 81.022 274 25 16 406 655 484715700 484715970 2.610000e-45 193.0
33 TraesCS1D01G443800 chr5A 83.274 281 21 12 406 664 10619632 10619908 4.280000e-58 235.0
34 TraesCS1D01G443800 chr3B 82.474 291 23 12 409 675 20066482 20066196 1.990000e-56 230.0
35 TraesCS1D01G443800 chr2A 87.437 199 17 5 406 599 104785808 104786003 3.330000e-54 222.0
36 TraesCS1D01G443800 chr2A 95.349 43 1 1 1210 1251 56519300 56519342 1.650000e-07 67.6
37 TraesCS1D01G443800 chr6D 94.231 104 5 1 600 703 70210 70312 9.520000e-35 158.0
38 TraesCS1D01G443800 chr6D 93.151 73 0 3 1115 1182 68334471 68334399 4.530000e-18 102.0
39 TraesCS1D01G443800 chr5B 92.405 79 1 3 1109 1182 590463825 590463747 9.730000e-20 108.0
40 TraesCS1D01G443800 chr5B 93.478 46 3 0 1213 1258 533571406 533571451 4.590000e-08 69.4
41 TraesCS1D01G443800 chr7B 90.244 82 7 1 722 802 583083401 583083482 3.500000e-19 106.0
42 TraesCS1D01G443800 chr7B 93.243 74 0 3 1114 1182 433174863 433174790 1.260000e-18 104.0
43 TraesCS1D01G443800 chr5D 91.358 81 2 3 1107 1182 496216249 496216329 3.500000e-19 106.0
44 TraesCS1D01G443800 chr5D 93.151 73 0 3 1115 1182 276292433 276292505 4.530000e-18 102.0
45 TraesCS1D01G443800 chr5D 93.151 73 0 3 1114 1181 436789906 436789978 4.530000e-18 102.0
46 TraesCS1D01G443800 chr5D 100.000 28 0 0 341 368 302353609 302353582 5.000000e-03 52.8
47 TraesCS1D01G443800 chr7D 89.024 82 8 1 722 802 539997398 539997479 1.630000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G443800 chr1D 487353940 487356510 2570 True 2142.000000 3986 100.0000 1 2571 2 chr1D.!!$R3 2570
1 TraesCS1D01G443800 chr1D 487439038 487439760 722 True 280.500000 324 81.9105 853 1710 2 chr1D.!!$R4 857
2 TraesCS1D01G443800 chr1B 641212055 641214426 2371 True 850.666667 1646 93.2000 1 2571 3 chr1B.!!$R2 2570
3 TraesCS1D01G443800 chr1B 678907050 678908796 1746 False 345.160000 737 95.2554 619 2571 5 chr1B.!!$F2 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
466 483 0.040157 TCAACAACGCATGCAGCTTC 60.04 50.0 19.57 0.0 42.61 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 2305 0.037512 CATGGGCCTCTATGAGAGCG 60.038 60.0 4.53 0.0 40.98 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 35 1.531748 CCGGATTGGGTATGCCACT 59.468 57.895 0.00 0.00 36.17 4.00
38 41 1.917872 TTGGGTATGCCACTGGAAAC 58.082 50.000 1.04 0.00 36.17 2.78
68 71 1.078918 CGAGGAGCCACAGATGCAA 60.079 57.895 0.00 0.00 0.00 4.08
97 100 0.535102 CGTGGTCCTGTTTTCCTGCT 60.535 55.000 0.00 0.00 0.00 4.24
140 143 1.578206 GCTCCCAGTCAAACTTCCGC 61.578 60.000 0.00 0.00 0.00 5.54
142 145 2.325082 CCCAGTCAAACTTCCGCCG 61.325 63.158 0.00 0.00 0.00 6.46
194 197 0.815734 GCAGCAACATCAGCCTTCAT 59.184 50.000 0.00 0.00 0.00 2.57
419 436 3.759086 GACCAAGGTCCTTGAGAATTTCC 59.241 47.826 29.91 8.07 43.42 3.13
466 483 0.040157 TCAACAACGCATGCAGCTTC 60.040 50.000 19.57 0.00 42.61 3.86
490 507 8.552083 TCGTACAAACTACACTACAGATTCTA 57.448 34.615 0.00 0.00 0.00 2.10
592 609 7.615403 TGTCATTAGTAATCTTCTGTCAGCTT 58.385 34.615 0.00 0.00 0.00 3.74
693 710 4.795278 GGTACGTCTACGGTGATACAAAAG 59.205 45.833 7.50 0.00 44.95 2.27
697 714 5.159209 CGTCTACGGTGATACAAAAGTTCT 58.841 41.667 0.00 0.00 35.37 3.01
705 722 4.676924 GTGATACAAAAGTTCTGCAGCAAC 59.323 41.667 9.47 14.06 0.00 4.17
747 774 8.641498 AGTCTTTGTAAATTGTCATCAGGAAT 57.359 30.769 0.00 0.00 0.00 3.01
1013 1400 1.406614 GGTCCTCATGGCAGTCTTCAG 60.407 57.143 0.00 0.00 0.00 3.02
1071 1458 2.967270 GCTCATGGCAACCCTTTCT 58.033 52.632 0.00 0.00 41.35 2.52
1095 1482 1.499007 TCAGAAGGAAACCCAGCCTTT 59.501 47.619 0.00 0.00 44.23 3.11
1116 1503 7.232994 CCTTTAGTACGTACGCTATCTCATAC 58.767 42.308 19.49 7.70 0.00 2.39
1117 1504 7.117523 CCTTTAGTACGTACGCTATCTCATACT 59.882 40.741 19.49 14.56 0.00 2.12
1118 1505 7.573916 TTAGTACGTACGCTATCTCATACTC 57.426 40.000 19.49 0.00 0.00 2.59
1119 1506 4.928615 AGTACGTACGCTATCTCATACTCC 59.071 45.833 19.49 0.00 0.00 3.85
1120 1507 3.072944 ACGTACGCTATCTCATACTCCC 58.927 50.000 16.72 0.00 0.00 4.30
1121 1508 3.244491 ACGTACGCTATCTCATACTCCCT 60.244 47.826 16.72 0.00 0.00 4.20
1122 1509 3.371591 CGTACGCTATCTCATACTCCCTC 59.628 52.174 0.52 0.00 0.00 4.30
1123 1510 2.797786 ACGCTATCTCATACTCCCTCC 58.202 52.381 0.00 0.00 0.00 4.30
1124 1511 1.740585 CGCTATCTCATACTCCCTCCG 59.259 57.143 0.00 0.00 0.00 4.63
1125 1512 2.797786 GCTATCTCATACTCCCTCCGT 58.202 52.381 0.00 0.00 0.00 4.69
1126 1513 3.158676 GCTATCTCATACTCCCTCCGTT 58.841 50.000 0.00 0.00 0.00 4.44
1127 1514 3.191791 GCTATCTCATACTCCCTCCGTTC 59.808 52.174 0.00 0.00 0.00 3.95
1128 1515 2.068834 TCTCATACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
1129 1516 1.286849 TCTCATACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1130 1517 2.091278 TCTCATACTCCCTCCGTTCCAT 60.091 50.000 0.00 0.00 0.00 3.41
1131 1518 3.139584 TCTCATACTCCCTCCGTTCCATA 59.860 47.826 0.00 0.00 0.00 2.74
1132 1519 4.090090 CTCATACTCCCTCCGTTCCATAT 58.910 47.826 0.00 0.00 0.00 1.78
1133 1520 4.489737 TCATACTCCCTCCGTTCCATATT 58.510 43.478 0.00 0.00 0.00 1.28
1134 1521 5.647230 TCATACTCCCTCCGTTCCATATTA 58.353 41.667 0.00 0.00 0.00 0.98
1135 1522 5.479375 TCATACTCCCTCCGTTCCATATTAC 59.521 44.000 0.00 0.00 0.00 1.89
1136 1523 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
1137 1524 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
1138 1525 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
1139 1526 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
1140 1527 3.305199 CCCTCCGTTCCATATTACTCGTC 60.305 52.174 0.00 0.00 0.00 4.20
1141 1528 3.552541 CTCCGTTCCATATTACTCGTCG 58.447 50.000 0.00 0.00 0.00 5.12
1142 1529 2.049228 CCGTTCCATATTACTCGTCGC 58.951 52.381 0.00 0.00 0.00 5.19
1143 1530 2.287427 CCGTTCCATATTACTCGTCGCT 60.287 50.000 0.00 0.00 0.00 4.93
1144 1531 2.719556 CGTTCCATATTACTCGTCGCTG 59.280 50.000 0.00 0.00 0.00 5.18
1145 1532 3.547413 CGTTCCATATTACTCGTCGCTGA 60.547 47.826 0.00 0.00 0.00 4.26
1146 1533 4.547532 GTTCCATATTACTCGTCGCTGAT 58.452 43.478 0.00 0.00 0.00 2.90
1147 1534 4.848562 TCCATATTACTCGTCGCTGATT 57.151 40.909 0.00 0.00 0.00 2.57
1148 1535 5.196341 TCCATATTACTCGTCGCTGATTT 57.804 39.130 0.00 0.00 0.00 2.17
1149 1536 6.321848 TCCATATTACTCGTCGCTGATTTA 57.678 37.500 0.00 0.00 0.00 1.40
1150 1537 6.379386 TCCATATTACTCGTCGCTGATTTAG 58.621 40.000 0.00 0.00 0.00 1.85
1151 1538 6.016527 TCCATATTACTCGTCGCTGATTTAGT 60.017 38.462 0.00 0.00 0.00 2.24
1152 1539 7.173735 TCCATATTACTCGTCGCTGATTTAGTA 59.826 37.037 0.00 0.00 0.00 1.82
1153 1540 7.270793 CCATATTACTCGTCGCTGATTTAGTAC 59.729 40.741 0.00 0.00 0.00 2.73
1154 1541 5.550232 TTACTCGTCGCTGATTTAGTACA 57.450 39.130 0.00 0.00 0.00 2.90
1155 1542 4.430137 ACTCGTCGCTGATTTAGTACAA 57.570 40.909 0.00 0.00 0.00 2.41
1156 1543 4.801891 ACTCGTCGCTGATTTAGTACAAA 58.198 39.130 0.00 0.00 0.00 2.83
1157 1544 4.857588 ACTCGTCGCTGATTTAGTACAAAG 59.142 41.667 0.00 0.00 0.00 2.77
1158 1545 4.801891 TCGTCGCTGATTTAGTACAAAGT 58.198 39.130 0.00 0.00 0.00 2.66
1159 1546 5.224888 TCGTCGCTGATTTAGTACAAAGTT 58.775 37.500 0.00 0.00 0.00 2.66
1160 1547 5.693104 TCGTCGCTGATTTAGTACAAAGTTT 59.307 36.000 0.00 0.00 0.00 2.66
1161 1548 6.201425 TCGTCGCTGATTTAGTACAAAGTTTT 59.799 34.615 0.00 0.00 0.00 2.43
1162 1549 7.381948 TCGTCGCTGATTTAGTACAAAGTTTTA 59.618 33.333 0.00 0.00 0.00 1.52
1163 1550 8.166706 CGTCGCTGATTTAGTACAAAGTTTTAT 58.833 33.333 0.00 0.00 0.00 1.40
1164 1551 9.474249 GTCGCTGATTTAGTACAAAGTTTTATC 57.526 33.333 0.00 0.00 0.00 1.75
1165 1552 9.210329 TCGCTGATTTAGTACAAAGTTTTATCA 57.790 29.630 0.00 0.00 0.00 2.15
1166 1553 9.478019 CGCTGATTTAGTACAAAGTTTTATCAG 57.522 33.333 0.00 0.00 39.43 2.90
1168 1555 9.478019 CTGATTTAGTACAAAGTTTTATCAGCG 57.522 33.333 0.00 0.00 32.78 5.18
1169 1556 9.210329 TGATTTAGTACAAAGTTTTATCAGCGA 57.790 29.630 0.00 0.00 0.00 4.93
1170 1557 9.474249 GATTTAGTACAAAGTTTTATCAGCGAC 57.526 33.333 0.00 0.00 0.00 5.19
1171 1558 5.511088 AGTACAAAGTTTTATCAGCGACG 57.489 39.130 0.00 0.00 0.00 5.12
1172 1559 5.224888 AGTACAAAGTTTTATCAGCGACGA 58.775 37.500 0.00 0.00 0.00 4.20
1173 1560 4.647291 ACAAAGTTTTATCAGCGACGAG 57.353 40.909 0.00 0.00 0.00 4.18
1174 1561 4.056050 ACAAAGTTTTATCAGCGACGAGT 58.944 39.130 0.00 0.00 0.00 4.18
1175 1562 5.224888 ACAAAGTTTTATCAGCGACGAGTA 58.775 37.500 0.00 0.00 0.00 2.59
1176 1563 5.693104 ACAAAGTTTTATCAGCGACGAGTAA 59.307 36.000 0.00 0.00 0.00 2.24
1177 1564 6.367969 ACAAAGTTTTATCAGCGACGAGTAAT 59.632 34.615 0.00 0.00 0.00 1.89
1178 1565 7.543172 ACAAAGTTTTATCAGCGACGAGTAATA 59.457 33.333 0.00 0.00 0.00 0.98
1179 1566 8.540492 CAAAGTTTTATCAGCGACGAGTAATAT 58.460 33.333 0.00 0.00 0.00 1.28
1180 1567 7.624706 AGTTTTATCAGCGACGAGTAATATG 57.375 36.000 0.00 0.00 0.00 1.78
1181 1568 6.641314 AGTTTTATCAGCGACGAGTAATATGG 59.359 38.462 0.00 0.00 0.00 2.74
1182 1569 5.700722 TTATCAGCGACGAGTAATATGGT 57.299 39.130 0.00 0.00 0.00 3.55
1183 1570 4.585955 ATCAGCGACGAGTAATATGGTT 57.414 40.909 0.00 0.00 0.00 3.67
1184 1571 4.380841 TCAGCGACGAGTAATATGGTTT 57.619 40.909 0.00 0.00 0.00 3.27
1185 1572 5.503662 TCAGCGACGAGTAATATGGTTTA 57.496 39.130 0.00 0.00 0.00 2.01
1186 1573 5.276270 TCAGCGACGAGTAATATGGTTTAC 58.724 41.667 0.00 0.00 33.20 2.01
1187 1574 5.066893 TCAGCGACGAGTAATATGGTTTACT 59.933 40.000 0.00 0.00 43.39 2.24
1188 1575 6.260714 TCAGCGACGAGTAATATGGTTTACTA 59.739 38.462 0.00 0.00 41.36 1.82
1189 1576 6.914215 CAGCGACGAGTAATATGGTTTACTAA 59.086 38.462 0.00 0.00 41.36 2.24
1190 1577 7.433131 CAGCGACGAGTAATATGGTTTACTAAA 59.567 37.037 0.00 0.00 41.36 1.85
1191 1578 8.139989 AGCGACGAGTAATATGGTTTACTAAAT 58.860 33.333 0.00 0.00 41.36 1.40
1192 1579 8.423215 GCGACGAGTAATATGGTTTACTAAATC 58.577 37.037 0.00 0.00 41.36 2.17
1193 1580 9.454585 CGACGAGTAATATGGTTTACTAAATCA 57.545 33.333 0.00 0.00 41.36 2.57
1195 1582 9.257651 ACGAGTAATATGGTTTACTAAATCAGC 57.742 33.333 1.15 0.00 41.36 4.26
1196 1583 8.425491 CGAGTAATATGGTTTACTAAATCAGCG 58.575 37.037 1.15 0.00 41.36 5.18
1197 1584 9.472361 GAGTAATATGGTTTACTAAATCAGCGA 57.528 33.333 1.15 0.00 41.36 4.93
1198 1585 9.257651 AGTAATATGGTTTACTAAATCAGCGAC 57.742 33.333 1.15 0.00 39.92 5.19
1199 1586 6.764877 ATATGGTTTACTAAATCAGCGACG 57.235 37.500 1.15 0.00 34.49 5.12
1200 1587 4.177165 TGGTTTACTAAATCAGCGACGA 57.823 40.909 0.00 0.00 0.00 4.20
1201 1588 4.171005 TGGTTTACTAAATCAGCGACGAG 58.829 43.478 0.00 0.00 0.00 4.18
1202 1589 4.171754 GGTTTACTAAATCAGCGACGAGT 58.828 43.478 0.00 0.00 0.00 4.18
1203 1590 5.106197 TGGTTTACTAAATCAGCGACGAGTA 60.106 40.000 0.00 0.00 0.00 2.59
1204 1591 5.801947 GGTTTACTAAATCAGCGACGAGTAA 59.198 40.000 0.00 0.00 0.00 2.24
1205 1592 6.474751 GGTTTACTAAATCAGCGACGAGTAAT 59.525 38.462 0.00 0.00 31.44 1.89
1206 1593 7.645340 GGTTTACTAAATCAGCGACGAGTAATA 59.355 37.037 0.00 0.00 31.44 0.98
1207 1594 9.178427 GTTTACTAAATCAGCGACGAGTAATAT 57.822 33.333 0.00 0.00 31.44 1.28
1208 1595 8.723777 TTACTAAATCAGCGACGAGTAATATG 57.276 34.615 0.00 0.00 0.00 1.78
1209 1596 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
1210 1597 4.585955 AATCAGCGACGAGTAATATGGT 57.414 40.909 0.00 0.00 0.00 3.55
1211 1598 4.585955 ATCAGCGACGAGTAATATGGTT 57.414 40.909 0.00 0.00 0.00 3.67
1212 1599 4.380841 TCAGCGACGAGTAATATGGTTT 57.619 40.909 0.00 0.00 0.00 3.27
1213 1600 5.503662 TCAGCGACGAGTAATATGGTTTA 57.496 39.130 0.00 0.00 0.00 2.01
1214 1601 5.276270 TCAGCGACGAGTAATATGGTTTAC 58.724 41.667 0.00 0.00 33.20 2.01
1215 1602 5.066893 TCAGCGACGAGTAATATGGTTTACT 59.933 40.000 0.00 0.00 43.39 2.24
1216 1603 6.260714 TCAGCGACGAGTAATATGGTTTACTA 59.739 38.462 0.00 0.00 41.36 1.82
1217 1604 6.914215 CAGCGACGAGTAATATGGTTTACTAA 59.086 38.462 0.00 0.00 41.36 2.24
1218 1605 7.433131 CAGCGACGAGTAATATGGTTTACTAAA 59.567 37.037 0.00 0.00 41.36 1.85
1219 1606 8.139989 AGCGACGAGTAATATGGTTTACTAAAT 58.860 33.333 0.00 0.00 41.36 1.40
1220 1607 8.423215 GCGACGAGTAATATGGTTTACTAAATC 58.577 37.037 0.00 0.00 41.36 2.17
1221 1608 9.454585 CGACGAGTAATATGGTTTACTAAATCA 57.545 33.333 0.00 0.00 41.36 2.57
1223 1610 9.257651 ACGAGTAATATGGTTTACTAAATCAGC 57.742 33.333 1.15 0.00 41.36 4.26
1224 1611 8.425491 CGAGTAATATGGTTTACTAAATCAGCG 58.575 37.037 1.15 0.00 41.36 5.18
1225 1612 9.472361 GAGTAATATGGTTTACTAAATCAGCGA 57.528 33.333 1.15 0.00 41.36 4.93
1226 1613 9.257651 AGTAATATGGTTTACTAAATCAGCGAC 57.742 33.333 1.15 0.00 39.92 5.19
1227 1614 6.764877 ATATGGTTTACTAAATCAGCGACG 57.235 37.500 1.15 0.00 34.49 5.12
1228 1615 4.177165 TGGTTTACTAAATCAGCGACGA 57.823 40.909 0.00 0.00 0.00 4.20
1229 1616 4.171005 TGGTTTACTAAATCAGCGACGAG 58.829 43.478 0.00 0.00 0.00 4.18
1230 1617 4.171754 GGTTTACTAAATCAGCGACGAGT 58.828 43.478 0.00 0.00 0.00 4.18
1231 1618 5.106197 TGGTTTACTAAATCAGCGACGAGTA 60.106 40.000 0.00 0.00 0.00 2.59
1232 1619 5.801947 GGTTTACTAAATCAGCGACGAGTAA 59.198 40.000 0.00 0.00 0.00 2.24
1233 1620 6.474751 GGTTTACTAAATCAGCGACGAGTAAT 59.525 38.462 0.00 0.00 31.44 1.89
1234 1621 7.645340 GGTTTACTAAATCAGCGACGAGTAATA 59.355 37.037 0.00 0.00 31.44 0.98
1235 1622 8.467574 GTTTACTAAATCAGCGACGAGTAATAC 58.532 37.037 0.00 0.80 31.44 1.89
1236 1623 5.203370 ACTAAATCAGCGACGAGTAATACG 58.797 41.667 0.00 0.00 0.00 3.06
1237 1624 2.682952 ATCAGCGACGAGTAATACGG 57.317 50.000 0.00 0.00 34.93 4.02
1238 1625 1.655484 TCAGCGACGAGTAATACGGA 58.345 50.000 0.00 0.00 34.93 4.69
1239 1626 2.009051 TCAGCGACGAGTAATACGGAA 58.991 47.619 0.00 0.00 34.93 4.30
1240 1627 2.107178 CAGCGACGAGTAATACGGAAC 58.893 52.381 0.00 0.00 34.93 3.62
1299 1689 9.710900 AAGATGTATATATCTTGCGATGTTTCA 57.289 29.630 20.30 0.00 43.75 2.69
1370 1765 5.552870 AACTGACTGGAGTAACAAGTGAT 57.447 39.130 0.00 0.00 0.00 3.06
1371 1766 4.887748 ACTGACTGGAGTAACAAGTGATG 58.112 43.478 0.00 0.00 0.00 3.07
1411 1806 4.199432 TGTGTTTGCAGTTGGATGTTTT 57.801 36.364 0.00 0.00 0.00 2.43
1435 1830 0.768221 TCCACCAGAACTGCTTCCCT 60.768 55.000 0.00 0.00 0.00 4.20
1493 1888 5.957796 GGAAAAGATACGTTAAGTGAATGCG 59.042 40.000 0.00 0.00 0.00 4.73
1545 1940 1.944024 CGGGCTTCAGTGTTGTTGTTA 59.056 47.619 0.00 0.00 0.00 2.41
1652 2063 3.056821 TCTGTTCGATCCACCTGTTGTAG 60.057 47.826 0.00 0.00 0.00 2.74
1725 2235 5.699915 GCATTAGCTCTTGCATTGAGAGATA 59.300 40.000 16.44 12.00 42.57 1.98
1729 2239 6.621316 AGCTCTTGCATTGAGAGATAATTG 57.379 37.500 16.44 0.00 42.57 2.32
1730 2240 6.120905 AGCTCTTGCATTGAGAGATAATTGT 58.879 36.000 16.44 0.00 42.57 2.71
1732 2242 7.772292 AGCTCTTGCATTGAGAGATAATTGTAA 59.228 33.333 16.44 0.00 42.57 2.41
1733 2243 8.068977 GCTCTTGCATTGAGAGATAATTGTAAG 58.931 37.037 16.44 0.00 42.57 2.34
1734 2244 9.322773 CTCTTGCATTGAGAGATAATTGTAAGA 57.677 33.333 7.99 0.00 42.57 2.10
1735 2245 9.842775 TCTTGCATTGAGAGATAATTGTAAGAT 57.157 29.630 0.00 0.00 0.00 2.40
1751 2261 9.864034 AATTGTAAGATATATTTTTGACGCTCG 57.136 29.630 0.00 0.00 0.00 5.03
1752 2262 7.997107 TGTAAGATATATTTTTGACGCTCGT 57.003 32.000 0.00 0.00 0.00 4.18
1753 2263 7.837505 TGTAAGATATATTTTTGACGCTCGTG 58.162 34.615 0.00 0.00 0.00 4.35
1754 2264 5.907197 AGATATATTTTTGACGCTCGTGG 57.093 39.130 0.00 0.00 0.00 4.94
1756 2266 5.462398 AGATATATTTTTGACGCTCGTGGAC 59.538 40.000 0.00 0.00 0.00 4.02
1757 2267 0.511221 ATTTTTGACGCTCGTGGACG 59.489 50.000 0.00 0.00 41.45 4.79
1758 2268 2.096481 TTTTTGACGCTCGTGGACGC 62.096 55.000 0.00 0.00 39.60 5.19
1759 2269 3.776659 TTTGACGCTCGTGGACGCA 62.777 57.895 0.00 0.00 39.60 5.24
1760 2270 4.700365 TGACGCTCGTGGACGCAG 62.700 66.667 0.00 0.00 39.60 5.18
1761 2271 4.400109 GACGCTCGTGGACGCAGA 62.400 66.667 0.00 0.00 39.60 4.26
1762 2272 3.685214 GACGCTCGTGGACGCAGAT 62.685 63.158 0.00 0.00 39.60 2.90
1763 2273 2.951745 CGCTCGTGGACGCAGATC 60.952 66.667 0.00 0.00 39.60 2.75
1775 2285 1.272781 CGCAGATCGTCTCAAAGACC 58.727 55.000 1.69 0.00 42.12 3.85
1776 2286 1.135257 CGCAGATCGTCTCAAAGACCT 60.135 52.381 1.69 0.00 42.12 3.85
1777 2287 2.097629 CGCAGATCGTCTCAAAGACCTA 59.902 50.000 1.69 0.00 42.12 3.08
1778 2288 3.701241 GCAGATCGTCTCAAAGACCTAG 58.299 50.000 1.69 0.00 42.12 3.02
1779 2289 3.490078 GCAGATCGTCTCAAAGACCTAGG 60.490 52.174 7.41 7.41 42.12 3.02
1780 2290 3.067461 CAGATCGTCTCAAAGACCTAGGG 59.933 52.174 14.81 0.00 42.12 3.53
1781 2291 2.893215 TCGTCTCAAAGACCTAGGGA 57.107 50.000 14.81 0.00 42.12 4.20
1782 2292 3.383698 TCGTCTCAAAGACCTAGGGAT 57.616 47.619 14.81 0.00 42.12 3.85
1783 2293 3.288964 TCGTCTCAAAGACCTAGGGATC 58.711 50.000 14.81 2.05 42.12 3.36
1784 2294 3.024547 CGTCTCAAAGACCTAGGGATCA 58.975 50.000 14.81 0.00 42.12 2.92
1785 2295 3.181485 CGTCTCAAAGACCTAGGGATCAC 60.181 52.174 14.81 0.00 42.12 3.06
1786 2296 3.024547 TCTCAAAGACCTAGGGATCACG 58.975 50.000 14.81 0.00 0.00 4.35
1787 2297 2.101582 CTCAAAGACCTAGGGATCACGG 59.898 54.545 14.81 0.00 0.00 4.94
1788 2298 0.831307 AAAGACCTAGGGATCACGGC 59.169 55.000 14.81 0.00 0.00 5.68
1789 2299 1.049289 AAGACCTAGGGATCACGGCC 61.049 60.000 14.81 0.00 0.00 6.13
1790 2300 2.838225 ACCTAGGGATCACGGCCG 60.838 66.667 26.86 26.86 0.00 6.13
1791 2301 2.838225 CCTAGGGATCACGGCCGT 60.838 66.667 28.70 28.70 0.00 5.68
1792 2302 2.432300 CCTAGGGATCACGGCCGTT 61.432 63.158 32.11 16.90 0.00 4.44
1793 2303 1.520666 CTAGGGATCACGGCCGTTT 59.479 57.895 32.11 20.13 0.00 3.60
1794 2304 0.810031 CTAGGGATCACGGCCGTTTG 60.810 60.000 32.11 19.71 0.00 2.93
1795 2305 2.862674 TAGGGATCACGGCCGTTTGC 62.863 60.000 32.11 23.66 40.16 3.68
1796 2306 4.160635 GGATCACGGCCGTTTGCG 62.161 66.667 32.11 18.37 42.61 4.85
1797 2307 4.811761 GATCACGGCCGTTTGCGC 62.812 66.667 32.11 12.88 42.61 6.09
1803 2313 3.127533 GGCCGTTTGCGCTCTCAT 61.128 61.111 9.73 0.00 42.61 2.90
1804 2314 1.813753 GGCCGTTTGCGCTCTCATA 60.814 57.895 9.73 0.00 42.61 2.15
1805 2315 1.638467 GCCGTTTGCGCTCTCATAG 59.362 57.895 9.73 0.00 36.67 2.23
1807 2317 1.203928 CCGTTTGCGCTCTCATAGAG 58.796 55.000 9.73 0.00 45.04 2.43
1810 2320 0.179073 TTTGCGCTCTCATAGAGGCC 60.179 55.000 9.73 0.00 42.54 5.19
1811 2321 2.032860 TTGCGCTCTCATAGAGGCCC 62.033 60.000 9.73 0.00 42.54 5.80
1813 2323 1.825281 GCGCTCTCATAGAGGCCCAT 61.825 60.000 0.00 0.00 42.54 4.00
1814 2324 0.037512 CGCTCTCATAGAGGCCCATG 60.038 60.000 0.00 0.42 42.54 3.66
1816 2326 1.270732 GCTCTCATAGAGGCCCATGTG 60.271 57.143 0.00 2.14 42.54 3.21
1827 2337 2.985957 GCCCATGTGCCAATTAACAT 57.014 45.000 0.00 0.00 37.50 2.71
1832 2342 4.588106 CCCATGTGCCAATTAACATCCATA 59.412 41.667 0.00 0.00 34.81 2.74
1834 2344 5.535783 CCATGTGCCAATTAACATCCATAGA 59.464 40.000 0.00 0.00 34.81 1.98
1836 2346 7.394077 CCATGTGCCAATTAACATCCATAGATA 59.606 37.037 0.00 0.00 34.81 1.98
1882 2392 7.100458 ACTTGAAGTTATTTTGTGTGCTTCT 57.900 32.000 0.00 0.00 34.96 2.85
1883 2393 8.220755 ACTTGAAGTTATTTTGTGTGCTTCTA 57.779 30.769 0.00 0.00 34.96 2.10
1885 2395 9.683069 CTTGAAGTTATTTTGTGTGCTTCTAAT 57.317 29.630 0.00 0.00 34.96 1.73
1926 2436 9.554395 TTTTCTATATCCGCTGATAATTTGTCA 57.446 29.630 1.70 0.00 37.04 3.58
1927 2437 9.554395 TTTCTATATCCGCTGATAATTTGTCAA 57.446 29.630 1.70 0.00 37.04 3.18
1928 2438 9.725019 TTCTATATCCGCTGATAATTTGTCAAT 57.275 29.630 1.70 0.00 37.04 2.57
1932 2442 6.801539 TCCGCTGATAATTTGTCAATATCC 57.198 37.500 0.00 0.00 0.00 2.59
1933 2443 6.295249 TCCGCTGATAATTTGTCAATATCCA 58.705 36.000 0.00 0.00 0.00 3.41
1934 2444 6.204688 TCCGCTGATAATTTGTCAATATCCAC 59.795 38.462 0.00 0.00 0.00 4.02
1935 2445 6.205464 CCGCTGATAATTTGTCAATATCCACT 59.795 38.462 0.00 0.00 0.00 4.00
1936 2446 7.255242 CCGCTGATAATTTGTCAATATCCACTT 60.255 37.037 0.00 0.00 0.00 3.16
1937 2447 7.800380 CGCTGATAATTTGTCAATATCCACTTC 59.200 37.037 0.00 0.00 0.00 3.01
1938 2448 7.800380 GCTGATAATTTGTCAATATCCACTTCG 59.200 37.037 0.00 0.00 0.00 3.79
1939 2449 8.731275 TGATAATTTGTCAATATCCACTTCGT 57.269 30.769 4.47 0.00 0.00 3.85
1940 2450 8.826710 TGATAATTTGTCAATATCCACTTCGTC 58.173 33.333 4.47 0.00 0.00 4.20
1941 2451 5.718649 ATTTGTCAATATCCACTTCGTCG 57.281 39.130 0.00 0.00 0.00 5.12
1942 2452 3.861276 TGTCAATATCCACTTCGTCGT 57.139 42.857 0.00 0.00 0.00 4.34
1943 2453 4.182693 TGTCAATATCCACTTCGTCGTT 57.817 40.909 0.00 0.00 0.00 3.85
1944 2454 4.171005 TGTCAATATCCACTTCGTCGTTC 58.829 43.478 0.00 0.00 0.00 3.95
1945 2455 3.239941 GTCAATATCCACTTCGTCGTTCG 59.760 47.826 0.00 0.00 41.41 3.95
1946 2456 3.119743 TCAATATCCACTTCGTCGTTCGT 60.120 43.478 0.00 0.00 40.80 3.85
1947 2457 2.995466 TATCCACTTCGTCGTTCGTT 57.005 45.000 0.00 0.00 40.80 3.85
1948 2458 1.415374 ATCCACTTCGTCGTTCGTTG 58.585 50.000 0.00 1.41 40.80 4.10
1949 2459 0.101040 TCCACTTCGTCGTTCGTTGT 59.899 50.000 0.00 1.89 40.80 3.32
1950 2460 0.228742 CCACTTCGTCGTTCGTTGTG 59.771 55.000 15.63 15.63 40.32 3.33
1951 2461 0.228742 CACTTCGTCGTTCGTTGTGG 59.771 55.000 15.21 0.00 38.71 4.17
1952 2462 0.179129 ACTTCGTCGTTCGTTGTGGT 60.179 50.000 0.00 0.00 40.80 4.16
1953 2463 0.501435 CTTCGTCGTTCGTTGTGGTC 59.499 55.000 0.00 0.00 40.80 4.02
1954 2464 0.101040 TTCGTCGTTCGTTGTGGTCT 59.899 50.000 0.00 0.00 40.80 3.85
1955 2465 0.101040 TCGTCGTTCGTTGTGGTCTT 59.899 50.000 0.00 0.00 40.80 3.01
1956 2466 1.333308 TCGTCGTTCGTTGTGGTCTTA 59.667 47.619 0.00 0.00 40.80 2.10
1957 2467 1.449418 CGTCGTTCGTTGTGGTCTTAC 59.551 52.381 0.00 0.00 34.52 2.34
1958 2468 2.735823 GTCGTTCGTTGTGGTCTTACT 58.264 47.619 0.00 0.00 0.00 2.24
1959 2469 2.723143 GTCGTTCGTTGTGGTCTTACTC 59.277 50.000 0.00 0.00 0.00 2.59
1960 2470 2.620115 TCGTTCGTTGTGGTCTTACTCT 59.380 45.455 0.00 0.00 0.00 3.24
1961 2471 2.978489 CGTTCGTTGTGGTCTTACTCTC 59.022 50.000 0.00 0.00 0.00 3.20
1962 2472 3.304525 CGTTCGTTGTGGTCTTACTCTCT 60.305 47.826 0.00 0.00 0.00 3.10
1963 2473 4.618965 GTTCGTTGTGGTCTTACTCTCTT 58.381 43.478 0.00 0.00 0.00 2.85
1964 2474 4.238761 TCGTTGTGGTCTTACTCTCTTG 57.761 45.455 0.00 0.00 0.00 3.02
1965 2475 3.635373 TCGTTGTGGTCTTACTCTCTTGT 59.365 43.478 0.00 0.00 0.00 3.16
1966 2476 4.098960 TCGTTGTGGTCTTACTCTCTTGTT 59.901 41.667 0.00 0.00 0.00 2.83
1967 2477 4.809426 CGTTGTGGTCTTACTCTCTTGTTT 59.191 41.667 0.00 0.00 0.00 2.83
1968 2478 5.981315 CGTTGTGGTCTTACTCTCTTGTTTA 59.019 40.000 0.00 0.00 0.00 2.01
1969 2479 6.144080 CGTTGTGGTCTTACTCTCTTGTTTAG 59.856 42.308 0.00 0.00 0.00 1.85
1970 2480 6.726490 TGTGGTCTTACTCTCTTGTTTAGT 57.274 37.500 0.00 0.00 0.00 2.24
1971 2481 6.746120 TGTGGTCTTACTCTCTTGTTTAGTC 58.254 40.000 0.00 0.00 0.00 2.59
1972 2482 6.157904 GTGGTCTTACTCTCTTGTTTAGTCC 58.842 44.000 0.00 0.00 0.00 3.85
1973 2483 6.015265 GTGGTCTTACTCTCTTGTTTAGTCCT 60.015 42.308 0.00 0.00 0.00 3.85
1974 2484 6.208994 TGGTCTTACTCTCTTGTTTAGTCCTC 59.791 42.308 0.00 0.00 0.00 3.71
1975 2485 6.208994 GGTCTTACTCTCTTGTTTAGTCCTCA 59.791 42.308 0.00 0.00 0.00 3.86
1976 2486 7.093684 GGTCTTACTCTCTTGTTTAGTCCTCAT 60.094 40.741 0.00 0.00 0.00 2.90
1977 2487 7.757624 GTCTTACTCTCTTGTTTAGTCCTCATG 59.242 40.741 0.00 0.00 0.00 3.07
1978 2488 5.413309 ACTCTCTTGTTTAGTCCTCATGG 57.587 43.478 0.00 0.00 0.00 3.66
1979 2489 4.841246 ACTCTCTTGTTTAGTCCTCATGGT 59.159 41.667 0.00 0.00 34.23 3.55
1980 2490 5.046950 ACTCTCTTGTTTAGTCCTCATGGTC 60.047 44.000 0.00 0.00 34.23 4.02
1981 2491 4.838423 TCTCTTGTTTAGTCCTCATGGTCA 59.162 41.667 0.00 0.00 34.23 4.02
1982 2492 5.485353 TCTCTTGTTTAGTCCTCATGGTCAT 59.515 40.000 0.00 0.00 34.23 3.06
1983 2493 5.734720 TCTTGTTTAGTCCTCATGGTCATC 58.265 41.667 0.00 0.00 34.23 2.92
1984 2494 5.248248 TCTTGTTTAGTCCTCATGGTCATCA 59.752 40.000 0.00 0.00 34.23 3.07
1985 2495 5.698741 TGTTTAGTCCTCATGGTCATCAT 57.301 39.130 0.00 0.00 36.31 2.45
1986 2496 5.674525 TGTTTAGTCCTCATGGTCATCATC 58.325 41.667 0.00 0.00 32.92 2.92
1987 2497 5.426509 TGTTTAGTCCTCATGGTCATCATCT 59.573 40.000 0.00 0.00 32.92 2.90
1988 2498 6.070021 TGTTTAGTCCTCATGGTCATCATCTT 60.070 38.462 0.00 0.00 32.92 2.40
1989 2499 4.686191 AGTCCTCATGGTCATCATCTTC 57.314 45.455 0.00 0.00 32.92 2.87
1993 2503 5.296283 GTCCTCATGGTCATCATCTTCTTTG 59.704 44.000 0.00 0.00 32.92 2.77
1998 2508 5.964958 TGGTCATCATCTTCTTTGGTTTC 57.035 39.130 0.00 0.00 0.00 2.78
2004 2514 6.600822 TCATCATCTTCTTTGGTTTCAGATCC 59.399 38.462 0.00 0.00 0.00 3.36
2005 2515 5.256474 TCATCTTCTTTGGTTTCAGATCCC 58.744 41.667 0.00 0.00 0.00 3.85
2006 2516 4.722526 TCTTCTTTGGTTTCAGATCCCA 57.277 40.909 0.00 0.00 0.00 4.37
2007 2517 4.655963 TCTTCTTTGGTTTCAGATCCCAG 58.344 43.478 0.00 0.00 0.00 4.45
2010 2520 0.776810 TTGGTTTCAGATCCCAGCCA 59.223 50.000 0.00 0.00 0.00 4.75
2011 2521 0.329261 TGGTTTCAGATCCCAGCCAG 59.671 55.000 0.00 0.00 0.00 4.85
2013 2523 1.004745 GGTTTCAGATCCCAGCCAGAA 59.995 52.381 0.00 0.00 0.00 3.02
2014 2524 2.555227 GGTTTCAGATCCCAGCCAGAAA 60.555 50.000 0.00 0.00 0.00 2.52
2015 2525 3.157087 GTTTCAGATCCCAGCCAGAAAA 58.843 45.455 0.00 0.00 0.00 2.29
2016 2526 2.795231 TCAGATCCCAGCCAGAAAAG 57.205 50.000 0.00 0.00 0.00 2.27
2017 2527 1.283029 TCAGATCCCAGCCAGAAAAGG 59.717 52.381 0.00 0.00 0.00 3.11
2019 2529 1.563410 AGATCCCAGCCAGAAAAGGAG 59.437 52.381 0.00 0.00 0.00 3.69
2021 2531 1.444933 TCCCAGCCAGAAAAGGAGAA 58.555 50.000 0.00 0.00 0.00 2.87
2023 2533 1.074566 CCCAGCCAGAAAAGGAGAACT 59.925 52.381 0.00 0.00 0.00 3.01
2024 2534 2.305927 CCCAGCCAGAAAAGGAGAACTA 59.694 50.000 0.00 0.00 0.00 2.24
2025 2535 3.604582 CCAGCCAGAAAAGGAGAACTAG 58.395 50.000 0.00 0.00 0.00 2.57
2026 2536 3.604582 CAGCCAGAAAAGGAGAACTAGG 58.395 50.000 0.00 0.00 0.00 3.02
2027 2537 3.008485 CAGCCAGAAAAGGAGAACTAGGT 59.992 47.826 0.00 0.00 0.00 3.08
2028 2538 4.223032 CAGCCAGAAAAGGAGAACTAGGTA 59.777 45.833 0.00 0.00 0.00 3.08
2029 2539 5.033522 AGCCAGAAAAGGAGAACTAGGTAT 58.966 41.667 0.00 0.00 0.00 2.73
2030 2540 5.104735 AGCCAGAAAAGGAGAACTAGGTATG 60.105 44.000 0.00 0.00 0.00 2.39
2031 2541 5.119694 CCAGAAAAGGAGAACTAGGTATGC 58.880 45.833 0.00 0.00 0.00 3.14
2032 2542 5.338381 CCAGAAAAGGAGAACTAGGTATGCA 60.338 44.000 0.00 0.00 0.00 3.96
2033 2543 6.173339 CAGAAAAGGAGAACTAGGTATGCAA 58.827 40.000 0.00 0.00 0.00 4.08
2034 2544 6.655003 CAGAAAAGGAGAACTAGGTATGCAAA 59.345 38.462 0.00 0.00 0.00 3.68
2035 2545 7.174946 CAGAAAAGGAGAACTAGGTATGCAAAA 59.825 37.037 0.00 0.00 0.00 2.44
2036 2546 7.391833 AGAAAAGGAGAACTAGGTATGCAAAAG 59.608 37.037 0.00 0.00 0.00 2.27
2037 2547 5.763876 AGGAGAACTAGGTATGCAAAAGT 57.236 39.130 0.00 0.00 0.00 2.66
2038 2548 5.491982 AGGAGAACTAGGTATGCAAAAGTG 58.508 41.667 0.00 0.00 0.00 3.16
2039 2549 5.248477 AGGAGAACTAGGTATGCAAAAGTGA 59.752 40.000 0.00 0.00 0.00 3.41
2040 2550 5.582665 GGAGAACTAGGTATGCAAAAGTGAG 59.417 44.000 0.00 0.00 0.00 3.51
2041 2551 5.491982 AGAACTAGGTATGCAAAAGTGAGG 58.508 41.667 0.00 0.00 0.00 3.86
2042 2552 4.910458 ACTAGGTATGCAAAAGTGAGGT 57.090 40.909 0.00 0.00 0.00 3.85
2043 2553 6.212791 AGAACTAGGTATGCAAAAGTGAGGTA 59.787 38.462 0.00 0.00 0.00 3.08
2044 2554 5.731591 ACTAGGTATGCAAAAGTGAGGTAC 58.268 41.667 0.00 0.00 0.00 3.34
2045 2555 4.634012 AGGTATGCAAAAGTGAGGTACA 57.366 40.909 0.00 0.00 0.00 2.90
2062 2572 7.676004 TGAGGTACACAGAGACAAAATATTCA 58.324 34.615 0.00 0.00 0.00 2.57
2063 2573 7.602644 TGAGGTACACAGAGACAAAATATTCAC 59.397 37.037 0.00 0.00 0.00 3.18
2064 2574 7.680730 AGGTACACAGAGACAAAATATTCACT 58.319 34.615 0.00 0.00 0.00 3.41
2065 2575 8.157476 AGGTACACAGAGACAAAATATTCACTT 58.843 33.333 0.00 0.00 0.00 3.16
2066 2576 8.443937 GGTACACAGAGACAAAATATTCACTTC 58.556 37.037 0.00 0.00 0.00 3.01
2067 2577 7.121974 ACACAGAGACAAAATATTCACTTCG 57.878 36.000 0.00 0.00 0.00 3.79
2068 2578 6.706270 ACACAGAGACAAAATATTCACTTCGT 59.294 34.615 0.00 0.00 0.00 3.85
2069 2579 7.095607 ACACAGAGACAAAATATTCACTTCGTC 60.096 37.037 0.00 0.00 0.00 4.20
2070 2580 6.369065 ACAGAGACAAAATATTCACTTCGTCC 59.631 38.462 0.00 0.00 0.00 4.79
2071 2581 6.368791 CAGAGACAAAATATTCACTTCGTCCA 59.631 38.462 0.00 0.00 0.00 4.02
2072 2582 6.934645 AGAGACAAAATATTCACTTCGTCCAA 59.065 34.615 0.00 0.00 0.00 3.53
2073 2583 7.444183 AGAGACAAAATATTCACTTCGTCCAAA 59.556 33.333 0.00 0.00 0.00 3.28
2074 2584 8.110860 AGACAAAATATTCACTTCGTCCAAAT 57.889 30.769 0.00 0.00 0.00 2.32
2075 2585 8.237267 AGACAAAATATTCACTTCGTCCAAATC 58.763 33.333 0.00 0.00 0.00 2.17
2076 2586 7.021196 ACAAAATATTCACTTCGTCCAAATCG 58.979 34.615 0.00 0.00 0.00 3.34
2077 2587 6.737254 AAATATTCACTTCGTCCAAATCGT 57.263 33.333 0.00 0.00 0.00 3.73
2078 2588 5.968387 ATATTCACTTCGTCCAAATCGTC 57.032 39.130 0.00 0.00 0.00 4.20
2079 2589 1.693467 TCACTTCGTCCAAATCGTCG 58.307 50.000 0.00 0.00 0.00 5.12
2080 2590 0.713883 CACTTCGTCCAAATCGTCGG 59.286 55.000 0.00 0.00 0.00 4.79
2081 2591 0.316204 ACTTCGTCCAAATCGTCGGT 59.684 50.000 0.00 0.00 0.00 4.69
2082 2592 1.541147 ACTTCGTCCAAATCGTCGGTA 59.459 47.619 0.00 0.00 0.00 4.02
2083 2593 2.182825 CTTCGTCCAAATCGTCGGTAG 58.817 52.381 0.00 0.00 0.00 3.18
2084 2594 0.179156 TCGTCCAAATCGTCGGTAGC 60.179 55.000 0.00 0.00 0.00 3.58
2085 2595 0.179145 CGTCCAAATCGTCGGTAGCT 60.179 55.000 0.00 0.00 0.00 3.32
2086 2596 1.064505 CGTCCAAATCGTCGGTAGCTA 59.935 52.381 0.00 0.00 0.00 3.32
2087 2597 2.478370 CGTCCAAATCGTCGGTAGCTAA 60.478 50.000 0.00 0.00 0.00 3.09
2088 2598 3.514645 GTCCAAATCGTCGGTAGCTAAA 58.485 45.455 0.00 0.00 0.00 1.85
2089 2599 3.305361 GTCCAAATCGTCGGTAGCTAAAC 59.695 47.826 0.00 0.00 0.00 2.01
2090 2600 2.606272 CCAAATCGTCGGTAGCTAAACC 59.394 50.000 0.00 0.00 36.08 3.27
2091 2601 3.518590 CAAATCGTCGGTAGCTAAACCT 58.481 45.455 4.18 0.00 37.39 3.50
2092 2602 2.865343 ATCGTCGGTAGCTAAACCTG 57.135 50.000 4.18 0.00 37.39 4.00
2093 2603 1.825090 TCGTCGGTAGCTAAACCTGA 58.175 50.000 4.18 1.00 37.39 3.86
2094 2604 2.161855 TCGTCGGTAGCTAAACCTGAA 58.838 47.619 4.18 0.00 37.39 3.02
2095 2605 2.756760 TCGTCGGTAGCTAAACCTGAAT 59.243 45.455 4.18 0.00 37.39 2.57
2096 2606 2.858344 CGTCGGTAGCTAAACCTGAATG 59.142 50.000 4.18 0.00 37.39 2.67
2097 2607 2.608090 GTCGGTAGCTAAACCTGAATGC 59.392 50.000 4.18 0.00 37.39 3.56
2098 2608 2.235155 TCGGTAGCTAAACCTGAATGCA 59.765 45.455 4.18 0.00 37.39 3.96
2099 2609 3.118408 TCGGTAGCTAAACCTGAATGCAT 60.118 43.478 4.18 0.00 37.39 3.96
2100 2610 3.002656 CGGTAGCTAAACCTGAATGCATG 59.997 47.826 0.00 0.00 37.39 4.06
2101 2611 3.243201 GGTAGCTAAACCTGAATGCATGC 60.243 47.826 11.82 11.82 36.53 4.06
2102 2612 2.449464 AGCTAAACCTGAATGCATGCA 58.551 42.857 25.04 25.04 0.00 3.96
2103 2613 2.827322 AGCTAAACCTGAATGCATGCAA 59.173 40.909 26.68 7.52 0.00 4.08
2104 2614 3.258872 AGCTAAACCTGAATGCATGCAAA 59.741 39.130 26.68 12.54 0.00 3.68
2105 2615 4.081309 AGCTAAACCTGAATGCATGCAAAT 60.081 37.500 26.68 17.01 0.00 2.32
2106 2616 4.269363 GCTAAACCTGAATGCATGCAAATC 59.731 41.667 26.68 24.43 0.00 2.17
2107 2617 2.572191 ACCTGAATGCATGCAAATCG 57.428 45.000 26.68 19.08 0.00 3.34
2108 2618 2.093890 ACCTGAATGCATGCAAATCGA 58.906 42.857 26.68 14.48 0.00 3.59
2109 2619 2.159338 ACCTGAATGCATGCAAATCGAC 60.159 45.455 26.68 12.43 0.00 4.20
2110 2620 2.456989 CTGAATGCATGCAAATCGACC 58.543 47.619 26.68 9.10 0.00 4.79
2111 2621 1.817447 TGAATGCATGCAAATCGACCA 59.183 42.857 26.68 11.52 0.00 4.02
2112 2622 2.159352 TGAATGCATGCAAATCGACCAG 60.159 45.455 26.68 0.00 0.00 4.00
2113 2623 1.466856 ATGCATGCAAATCGACCAGT 58.533 45.000 26.68 0.00 0.00 4.00
2114 2624 2.106477 TGCATGCAAATCGACCAGTA 57.894 45.000 20.30 0.00 0.00 2.74
2115 2625 2.009051 TGCATGCAAATCGACCAGTAG 58.991 47.619 20.30 0.00 0.00 2.57
2116 2626 2.009774 GCATGCAAATCGACCAGTAGT 58.990 47.619 14.21 0.00 0.00 2.73
2117 2627 3.194861 GCATGCAAATCGACCAGTAGTA 58.805 45.455 14.21 0.00 0.00 1.82
2118 2628 3.809832 GCATGCAAATCGACCAGTAGTAT 59.190 43.478 14.21 0.00 0.00 2.12
2119 2629 4.319046 GCATGCAAATCGACCAGTAGTATG 60.319 45.833 14.21 0.00 0.00 2.39
2120 2630 3.194861 TGCAAATCGACCAGTAGTATGC 58.805 45.455 0.00 0.00 0.00 3.14
2121 2631 3.194861 GCAAATCGACCAGTAGTATGCA 58.805 45.455 0.00 0.00 0.00 3.96
2122 2632 3.809832 GCAAATCGACCAGTAGTATGCAT 59.190 43.478 3.79 3.79 0.00 3.96
2123 2633 4.319046 GCAAATCGACCAGTAGTATGCATG 60.319 45.833 10.16 0.00 0.00 4.06
2124 2634 4.672587 AATCGACCAGTAGTATGCATGT 57.327 40.909 10.16 0.00 0.00 3.21
2125 2635 3.436700 TCGACCAGTAGTATGCATGTG 57.563 47.619 10.16 0.00 0.00 3.21
2126 2636 1.860950 CGACCAGTAGTATGCATGTGC 59.139 52.381 10.16 0.00 42.50 4.57
2139 2649 3.982576 GCATGTGCATGAGATGAATGA 57.017 42.857 15.53 0.00 41.20 2.57
2481 2991 1.204704 CTGCACTTCCACGGACAGATA 59.795 52.381 0.00 0.00 0.00 1.98
2525 3035 1.515521 GCTGGTCCTGAACAAACCGG 61.516 60.000 0.00 0.00 41.53 5.28
2527 3037 0.107831 TGGTCCTGAACAAACCGGAG 59.892 55.000 9.46 0.00 35.76 4.63
2528 3038 0.108019 GGTCCTGAACAAACCGGAGT 59.892 55.000 9.46 0.00 0.00 3.85
2529 3039 1.345415 GGTCCTGAACAAACCGGAGTA 59.655 52.381 9.46 0.00 0.00 2.59
2530 3040 2.027469 GGTCCTGAACAAACCGGAGTAT 60.027 50.000 9.46 0.00 0.00 2.12
2531 3041 3.196254 GGTCCTGAACAAACCGGAGTATA 59.804 47.826 9.46 0.00 0.00 1.47
2532 3042 4.179298 GTCCTGAACAAACCGGAGTATAC 58.821 47.826 9.46 0.00 0.00 1.47
2533 3043 4.081807 GTCCTGAACAAACCGGAGTATACT 60.082 45.833 9.46 4.68 0.00 2.12
2534 3044 4.529377 TCCTGAACAAACCGGAGTATACTT 59.471 41.667 9.46 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 35 3.517602 CTCGTATGATCGGTTGTTTCCA 58.482 45.455 0.00 0.00 0.00 3.53
38 41 1.603172 GGCTCCTCGTATGATCGGTTG 60.603 57.143 0.00 0.00 0.00 3.77
129 132 1.078708 GGATCCGGCGGAAGTTTGA 60.079 57.895 34.58 8.47 34.34 2.69
354 369 3.974757 CTATCCCCCGCGTCGTCC 61.975 72.222 4.92 0.00 0.00 4.79
419 436 4.640789 AGCAGTTAGGTCGTCTCATAAG 57.359 45.455 0.00 0.00 0.00 1.73
466 483 7.695618 GGTAGAATCTGTAGTGTAGTTTGTACG 59.304 40.741 0.00 0.00 30.46 3.67
568 585 7.978975 AGAAGCTGACAGAAGATTACTAATGAC 59.021 37.037 6.65 0.00 0.00 3.06
592 609 9.159254 AGGAACAATATGTCATGGATAAGTAGA 57.841 33.333 0.00 0.00 0.00 2.59
693 710 4.312231 TGCGCGTTGCTGCAGAAC 62.312 61.111 20.43 17.00 46.63 3.01
705 722 3.008240 CTCAGCTCTTGTGTGCGCG 62.008 63.158 0.00 0.00 37.71 6.86
1013 1400 3.199764 GCAACAGCCACATTGTTCC 57.800 52.632 0.00 0.00 36.67 3.62
1069 1456 0.693049 GGGTTTCCTTCTGAGGCAGA 59.307 55.000 0.00 0.00 43.21 4.26
1071 1458 0.401738 CTGGGTTTCCTTCTGAGGCA 59.598 55.000 0.00 0.00 43.21 4.75
1095 1482 6.096036 GGAGTATGAGATAGCGTACGTACTA 58.904 44.000 22.55 10.90 35.91 1.82
1116 1503 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
1117 1504 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
1118 1505 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
1119 1506 3.608707 CGACGAGTAATATGGAACGGAGG 60.609 52.174 0.00 0.00 0.00 4.30
1120 1507 3.552541 CGACGAGTAATATGGAACGGAG 58.447 50.000 0.00 0.00 0.00 4.63
1121 1508 2.287188 GCGACGAGTAATATGGAACGGA 60.287 50.000 0.00 0.00 0.00 4.69
1122 1509 2.049228 GCGACGAGTAATATGGAACGG 58.951 52.381 0.00 0.00 0.00 4.44
1123 1510 2.719556 CAGCGACGAGTAATATGGAACG 59.280 50.000 0.00 0.00 0.00 3.95
1124 1511 3.961182 TCAGCGACGAGTAATATGGAAC 58.039 45.455 0.00 0.00 0.00 3.62
1125 1512 4.848562 ATCAGCGACGAGTAATATGGAA 57.151 40.909 0.00 0.00 0.00 3.53
1126 1513 4.848562 AATCAGCGACGAGTAATATGGA 57.151 40.909 0.00 0.00 0.00 3.41
1127 1514 6.150318 ACTAAATCAGCGACGAGTAATATGG 58.850 40.000 0.00 0.00 0.00 2.74
1128 1515 7.801783 TGTACTAAATCAGCGACGAGTAATATG 59.198 37.037 0.00 0.00 0.00 1.78
1129 1516 7.868775 TGTACTAAATCAGCGACGAGTAATAT 58.131 34.615 0.00 0.00 0.00 1.28
1130 1517 7.250445 TGTACTAAATCAGCGACGAGTAATA 57.750 36.000 0.00 0.00 0.00 0.98
1131 1518 6.127810 TGTACTAAATCAGCGACGAGTAAT 57.872 37.500 0.00 0.00 0.00 1.89
1132 1519 5.550232 TGTACTAAATCAGCGACGAGTAA 57.450 39.130 0.00 0.00 0.00 2.24
1133 1520 5.550232 TTGTACTAAATCAGCGACGAGTA 57.450 39.130 0.00 0.00 0.00 2.59
1134 1521 4.430137 TTGTACTAAATCAGCGACGAGT 57.570 40.909 0.00 0.00 0.00 4.18
1135 1522 4.857588 ACTTTGTACTAAATCAGCGACGAG 59.142 41.667 0.00 0.00 0.00 4.18
1136 1523 4.801891 ACTTTGTACTAAATCAGCGACGA 58.198 39.130 0.00 0.00 0.00 4.20
1137 1524 5.511088 AACTTTGTACTAAATCAGCGACG 57.489 39.130 0.00 0.00 0.00 5.12
1138 1525 9.474249 GATAAAACTTTGTACTAAATCAGCGAC 57.526 33.333 0.00 0.00 0.00 5.19
1139 1526 9.210329 TGATAAAACTTTGTACTAAATCAGCGA 57.790 29.630 0.00 0.00 0.00 4.93
1140 1527 9.478019 CTGATAAAACTTTGTACTAAATCAGCG 57.522 33.333 12.52 0.00 33.63 5.18
1142 1529 9.478019 CGCTGATAAAACTTTGTACTAAATCAG 57.522 33.333 17.25 17.25 40.33 2.90
1143 1530 9.210329 TCGCTGATAAAACTTTGTACTAAATCA 57.790 29.630 0.00 0.00 0.00 2.57
1144 1531 9.474249 GTCGCTGATAAAACTTTGTACTAAATC 57.526 33.333 0.00 0.00 0.00 2.17
1145 1532 8.166706 CGTCGCTGATAAAACTTTGTACTAAAT 58.833 33.333 0.00 0.00 0.00 1.40
1146 1533 7.381948 TCGTCGCTGATAAAACTTTGTACTAAA 59.618 33.333 0.00 0.00 0.00 1.85
1147 1534 6.862608 TCGTCGCTGATAAAACTTTGTACTAA 59.137 34.615 0.00 0.00 0.00 2.24
1148 1535 6.380995 TCGTCGCTGATAAAACTTTGTACTA 58.619 36.000 0.00 0.00 0.00 1.82
1149 1536 5.224888 TCGTCGCTGATAAAACTTTGTACT 58.775 37.500 0.00 0.00 0.00 2.73
1150 1537 5.118203 ACTCGTCGCTGATAAAACTTTGTAC 59.882 40.000 0.00 0.00 0.00 2.90
1151 1538 5.224888 ACTCGTCGCTGATAAAACTTTGTA 58.775 37.500 0.00 0.00 0.00 2.41
1152 1539 4.056050 ACTCGTCGCTGATAAAACTTTGT 58.944 39.130 0.00 0.00 0.00 2.83
1153 1540 4.647291 ACTCGTCGCTGATAAAACTTTG 57.353 40.909 0.00 0.00 0.00 2.77
1154 1541 6.963049 ATTACTCGTCGCTGATAAAACTTT 57.037 33.333 0.00 0.00 0.00 2.66
1155 1542 7.169308 CCATATTACTCGTCGCTGATAAAACTT 59.831 37.037 0.00 0.00 0.00 2.66
1156 1543 6.641314 CCATATTACTCGTCGCTGATAAAACT 59.359 38.462 0.00 0.00 0.00 2.66
1157 1544 6.420008 ACCATATTACTCGTCGCTGATAAAAC 59.580 38.462 0.00 0.00 0.00 2.43
1158 1545 6.509656 ACCATATTACTCGTCGCTGATAAAA 58.490 36.000 0.00 0.00 0.00 1.52
1159 1546 6.080648 ACCATATTACTCGTCGCTGATAAA 57.919 37.500 0.00 0.00 0.00 1.40
1160 1547 5.700722 ACCATATTACTCGTCGCTGATAA 57.299 39.130 0.00 0.00 0.00 1.75
1161 1548 5.700722 AACCATATTACTCGTCGCTGATA 57.299 39.130 0.00 0.00 0.00 2.15
1162 1549 4.585955 AACCATATTACTCGTCGCTGAT 57.414 40.909 0.00 0.00 0.00 2.90
1163 1550 4.380841 AAACCATATTACTCGTCGCTGA 57.619 40.909 0.00 0.00 0.00 4.26
1164 1551 5.279384 AGTAAACCATATTACTCGTCGCTG 58.721 41.667 0.00 0.00 41.14 5.18
1165 1552 5.511234 AGTAAACCATATTACTCGTCGCT 57.489 39.130 0.00 0.00 41.14 4.93
1166 1553 7.684062 TTTAGTAAACCATATTACTCGTCGC 57.316 36.000 3.19 0.00 43.30 5.19
1167 1554 9.454585 TGATTTAGTAAACCATATTACTCGTCG 57.545 33.333 0.00 0.00 43.30 5.12
1169 1556 9.257651 GCTGATTTAGTAAACCATATTACTCGT 57.742 33.333 0.00 0.00 43.30 4.18
1170 1557 8.425491 CGCTGATTTAGTAAACCATATTACTCG 58.575 37.037 0.00 0.00 43.30 4.18
1171 1558 9.472361 TCGCTGATTTAGTAAACCATATTACTC 57.528 33.333 0.00 0.00 43.30 2.59
1172 1559 9.257651 GTCGCTGATTTAGTAAACCATATTACT 57.742 33.333 0.00 5.21 45.55 2.24
1173 1560 8.212495 CGTCGCTGATTTAGTAAACCATATTAC 58.788 37.037 0.00 0.00 36.28 1.89
1174 1561 8.136800 TCGTCGCTGATTTAGTAAACCATATTA 58.863 33.333 0.00 0.00 0.00 0.98
1175 1562 6.982141 TCGTCGCTGATTTAGTAAACCATATT 59.018 34.615 0.00 0.00 0.00 1.28
1176 1563 6.509656 TCGTCGCTGATTTAGTAAACCATAT 58.490 36.000 0.00 0.00 0.00 1.78
1177 1564 5.893687 TCGTCGCTGATTTAGTAAACCATA 58.106 37.500 0.00 0.00 0.00 2.74
1178 1565 4.751060 TCGTCGCTGATTTAGTAAACCAT 58.249 39.130 0.00 0.00 0.00 3.55
1179 1566 4.171005 CTCGTCGCTGATTTAGTAAACCA 58.829 43.478 0.00 0.00 0.00 3.67
1180 1567 4.171754 ACTCGTCGCTGATTTAGTAAACC 58.828 43.478 0.00 0.00 0.00 3.27
1181 1568 6.859715 TTACTCGTCGCTGATTTAGTAAAC 57.140 37.500 0.00 0.00 0.00 2.01
1182 1569 9.177304 CATATTACTCGTCGCTGATTTAGTAAA 57.823 33.333 0.00 0.00 34.25 2.01
1183 1570 7.806487 CCATATTACTCGTCGCTGATTTAGTAA 59.194 37.037 0.00 0.00 34.84 2.24
1184 1571 7.040892 ACCATATTACTCGTCGCTGATTTAGTA 60.041 37.037 0.00 0.00 0.00 1.82
1185 1572 6.150318 CCATATTACTCGTCGCTGATTTAGT 58.850 40.000 0.00 0.00 0.00 2.24
1186 1573 6.150318 ACCATATTACTCGTCGCTGATTTAG 58.850 40.000 0.00 0.00 0.00 1.85
1187 1574 6.080648 ACCATATTACTCGTCGCTGATTTA 57.919 37.500 0.00 0.00 0.00 1.40
1188 1575 4.945246 ACCATATTACTCGTCGCTGATTT 58.055 39.130 0.00 0.00 0.00 2.17
1189 1576 4.585955 ACCATATTACTCGTCGCTGATT 57.414 40.909 0.00 0.00 0.00 2.57
1190 1577 4.585955 AACCATATTACTCGTCGCTGAT 57.414 40.909 0.00 0.00 0.00 2.90
1191 1578 4.380841 AAACCATATTACTCGTCGCTGA 57.619 40.909 0.00 0.00 0.00 4.26
1192 1579 5.279384 AGTAAACCATATTACTCGTCGCTG 58.721 41.667 0.00 0.00 41.14 5.18
1193 1580 5.511234 AGTAAACCATATTACTCGTCGCT 57.489 39.130 0.00 0.00 41.14 4.93
1194 1581 7.684062 TTTAGTAAACCATATTACTCGTCGC 57.316 36.000 3.19 0.00 43.30 5.19
1195 1582 9.454585 TGATTTAGTAAACCATATTACTCGTCG 57.545 33.333 0.00 0.00 43.30 5.12
1197 1584 9.257651 GCTGATTTAGTAAACCATATTACTCGT 57.742 33.333 0.00 0.00 43.30 4.18
1198 1585 8.425491 CGCTGATTTAGTAAACCATATTACTCG 58.575 37.037 0.00 0.00 43.30 4.18
1199 1586 9.472361 TCGCTGATTTAGTAAACCATATTACTC 57.528 33.333 0.00 0.00 43.30 2.59
1200 1587 9.257651 GTCGCTGATTTAGTAAACCATATTACT 57.742 33.333 0.00 5.21 45.55 2.24
1201 1588 8.212495 CGTCGCTGATTTAGTAAACCATATTAC 58.788 37.037 0.00 0.00 36.28 1.89
1202 1589 8.136800 TCGTCGCTGATTTAGTAAACCATATTA 58.863 33.333 0.00 0.00 0.00 0.98
1203 1590 6.982141 TCGTCGCTGATTTAGTAAACCATATT 59.018 34.615 0.00 0.00 0.00 1.28
1204 1591 6.509656 TCGTCGCTGATTTAGTAAACCATAT 58.490 36.000 0.00 0.00 0.00 1.78
1205 1592 5.893687 TCGTCGCTGATTTAGTAAACCATA 58.106 37.500 0.00 0.00 0.00 2.74
1206 1593 4.751060 TCGTCGCTGATTTAGTAAACCAT 58.249 39.130 0.00 0.00 0.00 3.55
1207 1594 4.171005 CTCGTCGCTGATTTAGTAAACCA 58.829 43.478 0.00 0.00 0.00 3.67
1208 1595 4.171754 ACTCGTCGCTGATTTAGTAAACC 58.828 43.478 0.00 0.00 0.00 3.27
1209 1596 6.859715 TTACTCGTCGCTGATTTAGTAAAC 57.140 37.500 0.00 0.00 0.00 2.01
1210 1597 7.374228 CGTATTACTCGTCGCTGATTTAGTAAA 59.626 37.037 0.00 0.00 34.25 2.01
1211 1598 6.847792 CGTATTACTCGTCGCTGATTTAGTAA 59.152 38.462 0.00 0.00 34.84 2.24
1212 1599 6.357980 CGTATTACTCGTCGCTGATTTAGTA 58.642 40.000 0.00 0.00 0.00 1.82
1213 1600 5.203370 CGTATTACTCGTCGCTGATTTAGT 58.797 41.667 0.00 0.00 0.00 2.24
1214 1601 4.611782 CCGTATTACTCGTCGCTGATTTAG 59.388 45.833 0.00 0.00 0.00 1.85
1215 1602 4.273235 TCCGTATTACTCGTCGCTGATTTA 59.727 41.667 0.00 0.00 0.00 1.40
1216 1603 3.065786 TCCGTATTACTCGTCGCTGATTT 59.934 43.478 0.00 0.00 0.00 2.17
1217 1604 2.615447 TCCGTATTACTCGTCGCTGATT 59.385 45.455 0.00 0.00 0.00 2.57
1218 1605 2.216046 TCCGTATTACTCGTCGCTGAT 58.784 47.619 0.00 0.00 0.00 2.90
1219 1606 1.655484 TCCGTATTACTCGTCGCTGA 58.345 50.000 0.00 0.00 0.00 4.26
1220 1607 2.107178 GTTCCGTATTACTCGTCGCTG 58.893 52.381 0.00 0.00 0.00 5.18
1221 1608 1.267732 CGTTCCGTATTACTCGTCGCT 60.268 52.381 0.00 0.00 0.00 4.93
1222 1609 1.107720 CGTTCCGTATTACTCGTCGC 58.892 55.000 0.00 0.00 0.00 5.19
1223 1610 1.327460 TCCGTTCCGTATTACTCGTCG 59.673 52.381 0.00 0.00 0.00 5.12
1224 1611 2.609459 TCTCCGTTCCGTATTACTCGTC 59.391 50.000 0.00 0.00 0.00 4.20
1225 1612 2.611292 CTCTCCGTTCCGTATTACTCGT 59.389 50.000 0.00 0.00 0.00 4.18
1226 1613 2.868583 TCTCTCCGTTCCGTATTACTCG 59.131 50.000 0.00 0.00 0.00 4.18
1227 1614 3.876320 ACTCTCTCCGTTCCGTATTACTC 59.124 47.826 0.00 0.00 0.00 2.59
1228 1615 3.883669 ACTCTCTCCGTTCCGTATTACT 58.116 45.455 0.00 0.00 0.00 2.24
1229 1616 4.813697 ACTACTCTCTCCGTTCCGTATTAC 59.186 45.833 0.00 0.00 0.00 1.89
1230 1617 5.028549 ACTACTCTCTCCGTTCCGTATTA 57.971 43.478 0.00 0.00 0.00 0.98
1231 1618 3.883669 ACTACTCTCTCCGTTCCGTATT 58.116 45.455 0.00 0.00 0.00 1.89
1232 1619 3.557228 ACTACTCTCTCCGTTCCGTAT 57.443 47.619 0.00 0.00 0.00 3.06
1233 1620 3.340814 AACTACTCTCTCCGTTCCGTA 57.659 47.619 0.00 0.00 0.00 4.02
1234 1621 2.197283 AACTACTCTCTCCGTTCCGT 57.803 50.000 0.00 0.00 0.00 4.69
1235 1622 2.031930 GCTAACTACTCTCTCCGTTCCG 59.968 54.545 0.00 0.00 0.00 4.30
1236 1623 3.015327 TGCTAACTACTCTCTCCGTTCC 58.985 50.000 0.00 0.00 0.00 3.62
1237 1624 4.553156 CGATGCTAACTACTCTCTCCGTTC 60.553 50.000 0.00 0.00 0.00 3.95
1238 1625 3.312973 CGATGCTAACTACTCTCTCCGTT 59.687 47.826 0.00 0.00 0.00 4.44
1239 1626 2.873472 CGATGCTAACTACTCTCTCCGT 59.127 50.000 0.00 0.00 0.00 4.69
1240 1627 3.059461 GTCGATGCTAACTACTCTCTCCG 60.059 52.174 0.00 0.00 0.00 4.63
1241 1628 3.251487 GGTCGATGCTAACTACTCTCTCC 59.749 52.174 0.00 0.00 0.00 3.71
1242 1629 3.878103 TGGTCGATGCTAACTACTCTCTC 59.122 47.826 0.00 0.00 0.00 3.20
1243 1630 3.887352 TGGTCGATGCTAACTACTCTCT 58.113 45.455 0.00 0.00 0.00 3.10
1244 1631 4.839668 ATGGTCGATGCTAACTACTCTC 57.160 45.455 0.00 0.00 0.00 3.20
1245 1632 5.599999 AAATGGTCGATGCTAACTACTCT 57.400 39.130 0.00 0.00 0.00 3.24
1246 1633 6.312918 TGAAAAATGGTCGATGCTAACTACTC 59.687 38.462 0.00 0.00 0.00 2.59
1247 1634 6.170506 TGAAAAATGGTCGATGCTAACTACT 58.829 36.000 0.00 0.00 0.00 2.57
1297 1687 7.338196 ACAAAAATACCAATATCCATCGTGTGA 59.662 33.333 0.00 0.00 0.00 3.58
1298 1688 7.479980 ACAAAAATACCAATATCCATCGTGTG 58.520 34.615 0.00 0.00 0.00 3.82
1299 1689 7.639113 ACAAAAATACCAATATCCATCGTGT 57.361 32.000 0.00 0.00 0.00 4.49
1370 1765 6.634805 ACACATGAAACAAAACCAATACACA 58.365 32.000 0.00 0.00 0.00 3.72
1371 1766 7.532682 AACACATGAAACAAAACCAATACAC 57.467 32.000 0.00 0.00 0.00 2.90
1411 1806 0.764369 AGCAGTTCTGGTGGACCTCA 60.764 55.000 3.67 0.00 36.82 3.86
1435 1830 3.428589 CGCATCTCTTCTGACAGTCATCA 60.429 47.826 2.97 0.00 0.00 3.07
1493 1888 1.664965 GTACGCCATGATCCCGCTC 60.665 63.158 0.00 0.00 0.00 5.03
1725 2235 9.864034 CGAGCGTCAAAAATATATCTTACAATT 57.136 29.630 0.00 0.00 0.00 2.32
1727 2237 8.325282 CACGAGCGTCAAAAATATATCTTACAA 58.675 33.333 0.00 0.00 0.00 2.41
1729 2239 7.168637 TCCACGAGCGTCAAAAATATATCTTAC 59.831 37.037 0.00 0.00 0.00 2.34
1730 2240 7.168637 GTCCACGAGCGTCAAAAATATATCTTA 59.831 37.037 0.00 0.00 0.00 2.10
1732 2242 5.462398 GTCCACGAGCGTCAAAAATATATCT 59.538 40.000 0.00 0.00 0.00 1.98
1733 2243 5.609696 CGTCCACGAGCGTCAAAAATATATC 60.610 44.000 0.00 0.00 43.02 1.63
1734 2244 4.208460 CGTCCACGAGCGTCAAAAATATAT 59.792 41.667 0.00 0.00 43.02 0.86
1735 2245 3.548668 CGTCCACGAGCGTCAAAAATATA 59.451 43.478 0.00 0.00 43.02 0.86
1736 2246 2.347452 CGTCCACGAGCGTCAAAAATAT 59.653 45.455 0.00 0.00 43.02 1.28
1737 2247 1.722464 CGTCCACGAGCGTCAAAAATA 59.278 47.619 0.00 0.00 43.02 1.40
1738 2248 0.511221 CGTCCACGAGCGTCAAAAAT 59.489 50.000 0.00 0.00 43.02 1.82
1740 2250 2.591311 GCGTCCACGAGCGTCAAAA 61.591 57.895 2.58 0.00 43.02 2.44
1741 2251 3.033764 GCGTCCACGAGCGTCAAA 61.034 61.111 2.58 0.00 43.02 2.69
1742 2252 4.273257 TGCGTCCACGAGCGTCAA 62.273 61.111 2.58 0.00 43.02 3.18
1743 2253 4.700365 CTGCGTCCACGAGCGTCA 62.700 66.667 2.58 0.00 43.02 4.35
1744 2254 3.685214 ATCTGCGTCCACGAGCGTC 62.685 63.158 2.58 0.00 43.02 5.19
1745 2255 3.685214 GATCTGCGTCCACGAGCGT 62.685 63.158 2.58 0.00 43.02 5.07
1746 2256 2.951745 GATCTGCGTCCACGAGCG 60.952 66.667 2.58 0.00 43.02 5.03
1747 2257 2.951745 CGATCTGCGTCCACGAGC 60.952 66.667 2.58 0.00 43.02 5.03
1756 2266 1.135257 AGGTCTTTGAGACGATCTGCG 60.135 52.381 0.00 0.00 45.96 5.18
1757 2267 2.663826 AGGTCTTTGAGACGATCTGC 57.336 50.000 0.00 0.00 45.96 4.26
1758 2268 3.067461 CCCTAGGTCTTTGAGACGATCTG 59.933 52.174 8.29 0.00 45.96 2.90
1759 2269 3.053544 TCCCTAGGTCTTTGAGACGATCT 60.054 47.826 8.29 0.00 45.96 2.75
1760 2270 3.288964 TCCCTAGGTCTTTGAGACGATC 58.711 50.000 8.29 0.00 45.96 3.69
1761 2271 3.383698 TCCCTAGGTCTTTGAGACGAT 57.616 47.619 8.29 0.00 45.96 3.73
1762 2272 2.893215 TCCCTAGGTCTTTGAGACGA 57.107 50.000 8.29 0.00 45.96 4.20
1763 2273 3.024547 TGATCCCTAGGTCTTTGAGACG 58.975 50.000 8.29 0.00 45.96 4.18
1767 2277 2.108168 CCGTGATCCCTAGGTCTTTGA 58.892 52.381 8.29 0.00 0.00 2.69
1768 2278 1.473434 GCCGTGATCCCTAGGTCTTTG 60.473 57.143 8.29 0.00 0.00 2.77
1769 2279 0.831307 GCCGTGATCCCTAGGTCTTT 59.169 55.000 8.29 0.00 0.00 2.52
1770 2280 1.049289 GGCCGTGATCCCTAGGTCTT 61.049 60.000 8.29 0.00 0.00 3.01
1771 2281 1.457831 GGCCGTGATCCCTAGGTCT 60.458 63.158 8.29 0.00 0.00 3.85
1773 2283 2.838225 CGGCCGTGATCCCTAGGT 60.838 66.667 19.50 0.00 0.00 3.08
1774 2284 1.968050 AAACGGCCGTGATCCCTAGG 61.968 60.000 34.95 0.06 0.00 3.02
1775 2285 0.810031 CAAACGGCCGTGATCCCTAG 60.810 60.000 34.95 11.61 0.00 3.02
1776 2286 1.219664 CAAACGGCCGTGATCCCTA 59.780 57.895 34.95 0.00 0.00 3.53
1777 2287 2.046314 CAAACGGCCGTGATCCCT 60.046 61.111 34.95 12.75 0.00 4.20
1778 2288 3.810896 GCAAACGGCCGTGATCCC 61.811 66.667 34.95 14.98 36.11 3.85
1779 2289 4.160635 CGCAAACGGCCGTGATCC 62.161 66.667 34.95 19.06 40.31 3.36
1780 2290 4.811761 GCGCAAACGGCCGTGATC 62.812 66.667 34.95 21.51 40.31 2.92
1786 2296 1.766143 CTATGAGAGCGCAAACGGCC 61.766 60.000 11.47 0.00 40.31 6.13
1787 2297 0.806102 TCTATGAGAGCGCAAACGGC 60.806 55.000 11.47 0.00 40.57 5.68
1788 2298 1.203928 CTCTATGAGAGCGCAAACGG 58.796 55.000 11.47 0.00 35.30 4.44
1789 2299 1.203928 CCTCTATGAGAGCGCAAACG 58.796 55.000 11.47 0.00 40.98 3.60
1790 2300 0.933796 GCCTCTATGAGAGCGCAAAC 59.066 55.000 11.47 0.00 40.98 2.93
1791 2301 0.179073 GGCCTCTATGAGAGCGCAAA 60.179 55.000 11.47 0.00 40.98 3.68
1792 2302 1.443407 GGCCTCTATGAGAGCGCAA 59.557 57.895 11.47 0.00 40.98 4.85
1793 2303 2.502492 GGGCCTCTATGAGAGCGCA 61.502 63.158 11.47 0.00 40.98 6.09
1794 2304 1.825281 ATGGGCCTCTATGAGAGCGC 61.825 60.000 4.53 0.00 40.98 5.92
1795 2305 0.037512 CATGGGCCTCTATGAGAGCG 60.038 60.000 4.53 0.00 40.98 5.03
1796 2306 1.055040 ACATGGGCCTCTATGAGAGC 58.945 55.000 17.90 0.00 40.98 4.09
1797 2307 1.270732 GCACATGGGCCTCTATGAGAG 60.271 57.143 9.41 10.36 41.96 3.20
1798 2308 0.761187 GCACATGGGCCTCTATGAGA 59.239 55.000 9.41 0.00 35.70 3.27
1799 2309 3.319135 GCACATGGGCCTCTATGAG 57.681 57.895 9.41 12.70 35.70 2.90
1810 2320 4.675976 ATGGATGTTAATTGGCACATGG 57.324 40.909 0.00 0.00 39.30 3.66
1811 2321 6.638096 TCTATGGATGTTAATTGGCACATG 57.362 37.500 4.88 0.00 39.30 3.21
1856 2366 8.850156 AGAAGCACACAAAATAACTTCAAGTAT 58.150 29.630 0.00 0.00 36.77 2.12
1857 2367 8.220755 AGAAGCACACAAAATAACTTCAAGTA 57.779 30.769 0.00 0.00 36.77 2.24
1858 2368 7.100458 AGAAGCACACAAAATAACTTCAAGT 57.900 32.000 0.00 0.00 36.77 3.16
1859 2369 9.683069 ATTAGAAGCACACAAAATAACTTCAAG 57.317 29.630 0.00 0.00 36.77 3.02
1900 2410 9.554395 TGACAAATTATCAGCGGATATAGAAAA 57.446 29.630 7.41 0.00 35.96 2.29
1901 2411 9.554395 TTGACAAATTATCAGCGGATATAGAAA 57.446 29.630 7.41 0.00 35.96 2.52
1902 2412 9.725019 ATTGACAAATTATCAGCGGATATAGAA 57.275 29.630 7.41 0.00 35.96 2.10
1906 2416 9.113838 GGATATTGACAAATTATCAGCGGATAT 57.886 33.333 7.41 0.00 35.96 1.63
1907 2417 8.100164 TGGATATTGACAAATTATCAGCGGATA 58.900 33.333 2.11 2.11 34.89 2.59
1908 2418 6.942005 TGGATATTGACAAATTATCAGCGGAT 59.058 34.615 4.37 4.37 37.55 4.18
1909 2419 6.204688 GTGGATATTGACAAATTATCAGCGGA 59.795 38.462 9.81 0.00 0.00 5.54
1910 2420 6.205464 AGTGGATATTGACAAATTATCAGCGG 59.795 38.462 9.81 0.00 0.00 5.52
1911 2421 7.194607 AGTGGATATTGACAAATTATCAGCG 57.805 36.000 9.81 0.00 0.00 5.18
1912 2422 7.800380 CGAAGTGGATATTGACAAATTATCAGC 59.200 37.037 9.81 3.83 0.00 4.26
1913 2423 8.830580 ACGAAGTGGATATTGACAAATTATCAG 58.169 33.333 9.81 0.21 42.51 2.90
1914 2424 8.731275 ACGAAGTGGATATTGACAAATTATCA 57.269 30.769 9.81 0.00 42.51 2.15
1934 2444 0.501435 GACCACAACGAACGACGAAG 59.499 55.000 0.00 7.42 45.77 3.79
1935 2445 0.101040 AGACCACAACGAACGACGAA 59.899 50.000 0.00 0.00 45.77 3.85
1936 2446 0.101040 AAGACCACAACGAACGACGA 59.899 50.000 0.00 0.00 45.77 4.20
1938 2448 2.723143 GAGTAAGACCACAACGAACGAC 59.277 50.000 0.14 0.00 0.00 4.34
1939 2449 2.620115 AGAGTAAGACCACAACGAACGA 59.380 45.455 0.14 0.00 0.00 3.85
1940 2450 2.978489 GAGAGTAAGACCACAACGAACG 59.022 50.000 0.00 0.00 0.00 3.95
1941 2451 4.240175 AGAGAGTAAGACCACAACGAAC 57.760 45.455 0.00 0.00 0.00 3.95
1942 2452 4.098960 ACAAGAGAGTAAGACCACAACGAA 59.901 41.667 0.00 0.00 0.00 3.85
1943 2453 3.635373 ACAAGAGAGTAAGACCACAACGA 59.365 43.478 0.00 0.00 0.00 3.85
1944 2454 3.978687 ACAAGAGAGTAAGACCACAACG 58.021 45.455 0.00 0.00 0.00 4.10
1945 2455 6.985059 ACTAAACAAGAGAGTAAGACCACAAC 59.015 38.462 0.00 0.00 0.00 3.32
1946 2456 7.120923 ACTAAACAAGAGAGTAAGACCACAA 57.879 36.000 0.00 0.00 0.00 3.33
1947 2457 6.239232 GGACTAAACAAGAGAGTAAGACCACA 60.239 42.308 0.00 0.00 0.00 4.17
1948 2458 6.015265 AGGACTAAACAAGAGAGTAAGACCAC 60.015 42.308 0.00 0.00 0.00 4.16
1949 2459 6.075984 AGGACTAAACAAGAGAGTAAGACCA 58.924 40.000 0.00 0.00 0.00 4.02
1950 2460 6.208994 TGAGGACTAAACAAGAGAGTAAGACC 59.791 42.308 0.00 0.00 0.00 3.85
1951 2461 7.216973 TGAGGACTAAACAAGAGAGTAAGAC 57.783 40.000 0.00 0.00 0.00 3.01
1952 2462 7.093727 CCATGAGGACTAAACAAGAGAGTAAGA 60.094 40.741 0.00 0.00 36.89 2.10
1953 2463 7.038659 CCATGAGGACTAAACAAGAGAGTAAG 58.961 42.308 0.00 0.00 36.89 2.34
1954 2464 6.497259 ACCATGAGGACTAAACAAGAGAGTAA 59.503 38.462 0.00 0.00 38.69 2.24
1955 2465 6.017192 ACCATGAGGACTAAACAAGAGAGTA 58.983 40.000 0.00 0.00 38.69 2.59
1956 2466 4.841246 ACCATGAGGACTAAACAAGAGAGT 59.159 41.667 0.00 0.00 38.69 3.24
1957 2467 5.047021 TGACCATGAGGACTAAACAAGAGAG 60.047 44.000 0.00 0.00 38.69 3.20
1958 2468 4.838423 TGACCATGAGGACTAAACAAGAGA 59.162 41.667 0.00 0.00 38.69 3.10
1959 2469 5.152623 TGACCATGAGGACTAAACAAGAG 57.847 43.478 0.00 0.00 38.69 2.85
1960 2470 5.248248 TGATGACCATGAGGACTAAACAAGA 59.752 40.000 0.00 0.00 38.69 3.02
1961 2471 5.491070 TGATGACCATGAGGACTAAACAAG 58.509 41.667 0.00 0.00 38.69 3.16
1962 2472 5.497464 TGATGACCATGAGGACTAAACAA 57.503 39.130 0.00 0.00 38.69 2.83
1963 2473 5.426509 AGATGATGACCATGAGGACTAAACA 59.573 40.000 0.00 0.00 38.69 2.83
1964 2474 5.923204 AGATGATGACCATGAGGACTAAAC 58.077 41.667 0.00 0.00 38.69 2.01
1965 2475 6.385176 AGAAGATGATGACCATGAGGACTAAA 59.615 38.462 0.00 0.00 38.69 1.85
1966 2476 5.901853 AGAAGATGATGACCATGAGGACTAA 59.098 40.000 0.00 0.00 38.69 2.24
1967 2477 5.462240 AGAAGATGATGACCATGAGGACTA 58.538 41.667 0.00 0.00 38.69 2.59
1968 2478 4.296912 AGAAGATGATGACCATGAGGACT 58.703 43.478 0.00 0.00 38.69 3.85
1969 2479 4.686191 AGAAGATGATGACCATGAGGAC 57.314 45.455 0.00 0.00 38.69 3.85
1970 2480 5.434408 CAAAGAAGATGATGACCATGAGGA 58.566 41.667 0.00 0.00 38.69 3.71
1971 2481 4.579340 CCAAAGAAGATGATGACCATGAGG 59.421 45.833 0.00 0.00 42.21 3.86
1972 2482 5.191426 ACCAAAGAAGATGATGACCATGAG 58.809 41.667 0.00 0.00 35.17 2.90
1973 2483 5.183530 ACCAAAGAAGATGATGACCATGA 57.816 39.130 0.00 0.00 35.17 3.07
1974 2484 5.909621 AACCAAAGAAGATGATGACCATG 57.090 39.130 0.00 0.00 35.17 3.66
1975 2485 6.012113 TGAAACCAAAGAAGATGATGACCAT 58.988 36.000 0.00 0.00 38.43 3.55
1976 2486 5.384336 TGAAACCAAAGAAGATGATGACCA 58.616 37.500 0.00 0.00 0.00 4.02
1977 2487 5.707298 TCTGAAACCAAAGAAGATGATGACC 59.293 40.000 0.00 0.00 0.00 4.02
1978 2488 6.808008 TCTGAAACCAAAGAAGATGATGAC 57.192 37.500 0.00 0.00 0.00 3.06
1979 2489 6.600822 GGATCTGAAACCAAAGAAGATGATGA 59.399 38.462 0.00 0.00 0.00 2.92
1980 2490 6.183360 GGGATCTGAAACCAAAGAAGATGATG 60.183 42.308 0.00 0.00 0.00 3.07
1981 2491 5.890419 GGGATCTGAAACCAAAGAAGATGAT 59.110 40.000 0.00 0.00 0.00 2.45
1982 2492 5.222109 TGGGATCTGAAACCAAAGAAGATGA 60.222 40.000 1.70 0.00 0.00 2.92
1983 2493 5.012239 TGGGATCTGAAACCAAAGAAGATG 58.988 41.667 1.70 0.00 0.00 2.90
1984 2494 5.259632 CTGGGATCTGAAACCAAAGAAGAT 58.740 41.667 5.39 0.00 33.13 2.40
1985 2495 4.655963 CTGGGATCTGAAACCAAAGAAGA 58.344 43.478 5.39 0.00 33.13 2.87
1986 2496 3.192212 GCTGGGATCTGAAACCAAAGAAG 59.808 47.826 5.39 0.00 33.13 2.85
1987 2497 3.157087 GCTGGGATCTGAAACCAAAGAA 58.843 45.455 5.39 0.00 33.13 2.52
1988 2498 2.555227 GGCTGGGATCTGAAACCAAAGA 60.555 50.000 5.39 0.00 33.13 2.52
1989 2499 1.821136 GGCTGGGATCTGAAACCAAAG 59.179 52.381 5.39 4.36 33.13 2.77
1993 2503 0.620556 TCTGGCTGGGATCTGAAACC 59.379 55.000 0.00 0.00 0.00 3.27
1998 2508 1.283029 TCCTTTTCTGGCTGGGATCTG 59.717 52.381 0.00 0.00 0.00 2.90
2004 2514 2.575805 AGTTCTCCTTTTCTGGCTGG 57.424 50.000 0.00 0.00 0.00 4.85
2005 2515 3.008485 ACCTAGTTCTCCTTTTCTGGCTG 59.992 47.826 0.00 0.00 0.00 4.85
2006 2516 3.252351 ACCTAGTTCTCCTTTTCTGGCT 58.748 45.455 0.00 0.00 0.00 4.75
2007 2517 3.704800 ACCTAGTTCTCCTTTTCTGGC 57.295 47.619 0.00 0.00 0.00 4.85
2010 2520 6.374417 TTGCATACCTAGTTCTCCTTTTCT 57.626 37.500 0.00 0.00 0.00 2.52
2011 2521 7.175119 ACTTTTGCATACCTAGTTCTCCTTTTC 59.825 37.037 0.00 0.00 0.00 2.29
2013 2523 6.431234 CACTTTTGCATACCTAGTTCTCCTTT 59.569 38.462 0.00 0.00 0.00 3.11
2014 2524 5.940470 CACTTTTGCATACCTAGTTCTCCTT 59.060 40.000 0.00 0.00 0.00 3.36
2015 2525 5.248477 TCACTTTTGCATACCTAGTTCTCCT 59.752 40.000 0.00 0.00 0.00 3.69
2016 2526 5.488341 TCACTTTTGCATACCTAGTTCTCC 58.512 41.667 0.00 0.00 0.00 3.71
2017 2527 5.582665 CCTCACTTTTGCATACCTAGTTCTC 59.417 44.000 0.00 0.00 0.00 2.87
2019 2529 5.246307 ACCTCACTTTTGCATACCTAGTTC 58.754 41.667 0.00 0.00 0.00 3.01
2021 2531 4.910458 ACCTCACTTTTGCATACCTAGT 57.090 40.909 0.00 0.00 0.00 2.57
2023 2533 5.012251 TGTGTACCTCACTTTTGCATACCTA 59.988 40.000 0.00 0.00 46.27 3.08
2024 2534 4.202419 TGTGTACCTCACTTTTGCATACCT 60.202 41.667 0.00 0.00 46.27 3.08
2025 2535 4.069304 TGTGTACCTCACTTTTGCATACC 58.931 43.478 0.00 0.00 46.27 2.73
2026 2536 4.994852 TCTGTGTACCTCACTTTTGCATAC 59.005 41.667 0.00 0.00 46.27 2.39
2027 2537 5.011635 TCTCTGTGTACCTCACTTTTGCATA 59.988 40.000 0.00 0.00 46.27 3.14
2028 2538 4.067896 CTCTGTGTACCTCACTTTTGCAT 58.932 43.478 0.00 0.00 46.27 3.96
2029 2539 3.133901 TCTCTGTGTACCTCACTTTTGCA 59.866 43.478 0.00 0.00 46.27 4.08
2030 2540 3.495001 GTCTCTGTGTACCTCACTTTTGC 59.505 47.826 0.00 0.00 46.27 3.68
2031 2541 4.693283 TGTCTCTGTGTACCTCACTTTTG 58.307 43.478 0.00 0.00 46.27 2.44
2032 2542 5.353394 TTGTCTCTGTGTACCTCACTTTT 57.647 39.130 0.00 0.00 46.27 2.27
2033 2543 5.353394 TTTGTCTCTGTGTACCTCACTTT 57.647 39.130 0.00 0.00 46.27 2.66
2034 2544 5.353394 TTTTGTCTCTGTGTACCTCACTT 57.647 39.130 0.00 0.00 46.27 3.16
2035 2545 5.552870 ATTTTGTCTCTGTGTACCTCACT 57.447 39.130 0.00 0.00 46.27 3.41
2036 2546 7.602644 TGAATATTTTGTCTCTGTGTACCTCAC 59.397 37.037 0.00 0.00 46.31 3.51
2037 2547 7.602644 GTGAATATTTTGTCTCTGTGTACCTCA 59.397 37.037 0.00 0.00 0.00 3.86
2038 2548 7.819900 AGTGAATATTTTGTCTCTGTGTACCTC 59.180 37.037 0.00 0.00 0.00 3.85
2039 2549 7.680730 AGTGAATATTTTGTCTCTGTGTACCT 58.319 34.615 0.00 0.00 0.00 3.08
2040 2550 7.907214 AGTGAATATTTTGTCTCTGTGTACC 57.093 36.000 0.00 0.00 0.00 3.34
2041 2551 8.162880 CGAAGTGAATATTTTGTCTCTGTGTAC 58.837 37.037 0.00 0.00 0.00 2.90
2042 2552 7.870954 ACGAAGTGAATATTTTGTCTCTGTGTA 59.129 33.333 0.00 0.00 42.51 2.90
2043 2553 6.706270 ACGAAGTGAATATTTTGTCTCTGTGT 59.294 34.615 0.00 0.00 42.51 3.72
2044 2554 7.121974 ACGAAGTGAATATTTTGTCTCTGTG 57.878 36.000 0.00 0.00 42.51 3.66
2063 2573 2.182825 CTACCGACGATTTGGACGAAG 58.817 52.381 0.00 0.00 34.70 3.79
2064 2574 1.733389 GCTACCGACGATTTGGACGAA 60.733 52.381 0.00 0.00 34.70 3.85
2065 2575 0.179156 GCTACCGACGATTTGGACGA 60.179 55.000 0.00 0.00 34.70 4.20
2066 2576 0.179145 AGCTACCGACGATTTGGACG 60.179 55.000 0.00 0.00 0.00 4.79
2067 2577 2.857592 TAGCTACCGACGATTTGGAC 57.142 50.000 0.00 0.00 0.00 4.02
2068 2578 3.514645 GTTTAGCTACCGACGATTTGGA 58.485 45.455 0.00 0.00 0.00 3.53
2069 2579 2.606272 GGTTTAGCTACCGACGATTTGG 59.394 50.000 0.00 0.00 0.00 3.28
2070 2580 3.306166 CAGGTTTAGCTACCGACGATTTG 59.694 47.826 0.00 0.00 43.21 2.32
2071 2581 3.194116 TCAGGTTTAGCTACCGACGATTT 59.806 43.478 0.00 0.00 43.21 2.17
2072 2582 2.756760 TCAGGTTTAGCTACCGACGATT 59.243 45.455 0.00 0.00 43.21 3.34
2073 2583 2.372264 TCAGGTTTAGCTACCGACGAT 58.628 47.619 0.00 0.00 43.21 3.73
2074 2584 1.825090 TCAGGTTTAGCTACCGACGA 58.175 50.000 0.00 0.00 43.21 4.20
2075 2585 2.642139 TTCAGGTTTAGCTACCGACG 57.358 50.000 0.00 0.00 43.21 5.12
2076 2586 2.608090 GCATTCAGGTTTAGCTACCGAC 59.392 50.000 0.00 0.00 43.21 4.79
2077 2587 2.235155 TGCATTCAGGTTTAGCTACCGA 59.765 45.455 0.00 0.00 43.21 4.69
2078 2588 2.627945 TGCATTCAGGTTTAGCTACCG 58.372 47.619 0.00 0.00 43.21 4.02
2079 2589 3.243201 GCATGCATTCAGGTTTAGCTACC 60.243 47.826 14.21 0.00 38.53 3.18
2080 2590 3.378112 TGCATGCATTCAGGTTTAGCTAC 59.622 43.478 18.46 0.00 0.00 3.58
2081 2591 3.619419 TGCATGCATTCAGGTTTAGCTA 58.381 40.909 18.46 0.00 0.00 3.32
2082 2592 2.449464 TGCATGCATTCAGGTTTAGCT 58.551 42.857 18.46 0.00 0.00 3.32
2083 2593 2.945447 TGCATGCATTCAGGTTTAGC 57.055 45.000 18.46 0.00 0.00 3.09
2084 2594 4.501559 CGATTTGCATGCATTCAGGTTTAG 59.498 41.667 23.37 3.76 0.00 1.85
2085 2595 4.157472 TCGATTTGCATGCATTCAGGTTTA 59.843 37.500 23.37 0.00 0.00 2.01
2086 2596 3.056678 TCGATTTGCATGCATTCAGGTTT 60.057 39.130 23.37 0.06 0.00 3.27
2087 2597 2.492881 TCGATTTGCATGCATTCAGGTT 59.507 40.909 23.37 1.19 0.00 3.50
2088 2598 2.093890 TCGATTTGCATGCATTCAGGT 58.906 42.857 23.37 3.96 0.00 4.00
2089 2599 2.456989 GTCGATTTGCATGCATTCAGG 58.543 47.619 23.37 10.35 0.00 3.86
2090 2600 2.159352 TGGTCGATTTGCATGCATTCAG 60.159 45.455 23.37 13.73 0.00 3.02
2091 2601 1.817447 TGGTCGATTTGCATGCATTCA 59.183 42.857 23.37 9.29 0.00 2.57
2092 2602 2.159338 ACTGGTCGATTTGCATGCATTC 60.159 45.455 23.37 19.52 0.00 2.67
2093 2603 1.820519 ACTGGTCGATTTGCATGCATT 59.179 42.857 23.37 12.55 0.00 3.56
2094 2604 1.466856 ACTGGTCGATTTGCATGCAT 58.533 45.000 23.37 7.51 0.00 3.96
2095 2605 2.009051 CTACTGGTCGATTTGCATGCA 58.991 47.619 18.46 18.46 0.00 3.96
2096 2606 2.009774 ACTACTGGTCGATTTGCATGC 58.990 47.619 11.82 11.82 0.00 4.06
2097 2607 4.319046 GCATACTACTGGTCGATTTGCATG 60.319 45.833 0.00 0.00 0.00 4.06
2098 2608 3.809832 GCATACTACTGGTCGATTTGCAT 59.190 43.478 0.00 0.00 0.00 3.96
2099 2609 3.194861 GCATACTACTGGTCGATTTGCA 58.805 45.455 0.00 0.00 0.00 4.08
2100 2610 3.194861 TGCATACTACTGGTCGATTTGC 58.805 45.455 0.00 0.00 0.00 3.68
2101 2611 4.811024 ACATGCATACTACTGGTCGATTTG 59.189 41.667 0.00 0.00 0.00 2.32
2102 2612 4.811024 CACATGCATACTACTGGTCGATTT 59.189 41.667 0.00 0.00 0.00 2.17
2103 2613 4.371786 CACATGCATACTACTGGTCGATT 58.628 43.478 0.00 0.00 0.00 3.34
2104 2614 3.800261 GCACATGCATACTACTGGTCGAT 60.800 47.826 0.00 0.00 41.59 3.59
2105 2615 2.481276 GCACATGCATACTACTGGTCGA 60.481 50.000 0.00 0.00 41.59 4.20
2106 2616 1.860950 GCACATGCATACTACTGGTCG 59.139 52.381 0.00 0.00 41.59 4.79
2119 2629 3.982576 TCATTCATCTCATGCACATGC 57.017 42.857 5.73 0.00 38.65 4.06
2120 2630 6.417930 GTGATTTCATTCATCTCATGCACATG 59.582 38.462 4.18 4.18 40.09 3.21
2121 2631 6.461092 GGTGATTTCATTCATCTCATGCACAT 60.461 38.462 0.00 0.00 0.00 3.21
2122 2632 5.163591 GGTGATTTCATTCATCTCATGCACA 60.164 40.000 0.00 0.00 0.00 4.57
2123 2633 5.163591 TGGTGATTTCATTCATCTCATGCAC 60.164 40.000 0.00 0.00 0.00 4.57
2124 2634 4.951094 TGGTGATTTCATTCATCTCATGCA 59.049 37.500 0.00 0.00 0.00 3.96
2125 2635 5.509716 TGGTGATTTCATTCATCTCATGC 57.490 39.130 0.00 0.00 0.00 4.06
2126 2636 6.264518 TCCATGGTGATTTCATTCATCTCATG 59.735 38.462 12.58 0.00 35.35 3.07
2127 2637 6.264744 GTCCATGGTGATTTCATTCATCTCAT 59.735 38.462 12.58 0.00 0.00 2.90
2128 2638 5.591472 GTCCATGGTGATTTCATTCATCTCA 59.409 40.000 12.58 0.00 0.00 3.27
2129 2639 5.277683 CGTCCATGGTGATTTCATTCATCTC 60.278 44.000 12.58 0.00 0.00 2.75
2130 2640 4.577693 CGTCCATGGTGATTTCATTCATCT 59.422 41.667 12.58 0.00 0.00 2.90
2131 2641 4.790766 GCGTCCATGGTGATTTCATTCATC 60.791 45.833 12.58 0.00 0.00 2.92
2132 2642 3.067180 GCGTCCATGGTGATTTCATTCAT 59.933 43.478 12.58 0.00 0.00 2.57
2133 2643 2.423185 GCGTCCATGGTGATTTCATTCA 59.577 45.455 12.58 0.00 0.00 2.57
2134 2644 2.423185 TGCGTCCATGGTGATTTCATTC 59.577 45.455 12.58 0.00 0.00 2.67
2135 2645 2.424601 CTGCGTCCATGGTGATTTCATT 59.575 45.455 12.58 0.00 0.00 2.57
2136 2646 2.019249 CTGCGTCCATGGTGATTTCAT 58.981 47.619 12.58 0.00 0.00 2.57
2137 2647 1.271325 ACTGCGTCCATGGTGATTTCA 60.271 47.619 12.58 2.10 0.00 2.69
2138 2648 1.453155 ACTGCGTCCATGGTGATTTC 58.547 50.000 12.58 0.00 0.00 2.17
2139 2649 3.650647 ACTGCGTCCATGGTGATTT 57.349 47.368 12.58 0.00 0.00 2.17
2481 2991 3.367703 CCAAAATTTGCGCCTCAGATCTT 60.368 43.478 4.18 0.00 0.00 2.40
2525 3035 6.473758 AGGTGGAGGAAAAACAAGTATACTC 58.526 40.000 5.70 0.00 0.00 2.59
2527 3037 5.350640 CGAGGTGGAGGAAAAACAAGTATAC 59.649 44.000 0.00 0.00 0.00 1.47
2528 3038 5.484715 CGAGGTGGAGGAAAAACAAGTATA 58.515 41.667 0.00 0.00 0.00 1.47
2529 3039 4.324267 CGAGGTGGAGGAAAAACAAGTAT 58.676 43.478 0.00 0.00 0.00 2.12
2530 3040 3.495453 CCGAGGTGGAGGAAAAACAAGTA 60.495 47.826 0.00 0.00 42.00 2.24
2531 3041 2.572290 CGAGGTGGAGGAAAAACAAGT 58.428 47.619 0.00 0.00 0.00 3.16
2532 3042 1.880027 CCGAGGTGGAGGAAAAACAAG 59.120 52.381 0.00 0.00 42.00 3.16
2533 3043 1.975660 CCGAGGTGGAGGAAAAACAA 58.024 50.000 0.00 0.00 42.00 2.83
2534 3044 0.536460 GCCGAGGTGGAGGAAAAACA 60.536 55.000 0.00 0.00 42.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.